RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 030580
         (175 letters)



>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 127

 Score =  102 bits (257), Expect = 2e-29
 Identities = 34/101 (33%), Positives = 55/101 (54%)

Query: 74  NNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLI 133
             + +   +    A A+Y+ MS  KVR V+D IRG+S ++   +L  +P  A  P+ K++
Sbjct: 6   QRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVL 65

Query: 134 YSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
            SA AN +HN    E  L + +A V+   + KR  P+A+G 
Sbjct: 66  NSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGS 106


>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli
           [TaxId: 562]}
          Length = 106

 Score =  101 bits (254), Expect = 3e-29
 Identities = 35/88 (39%), Positives = 47/88 (53%)

Query: 87  ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
           A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G 
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGA 60

Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGR 174
           +   L + K  V+E  S KR  P+A+GR
Sbjct: 61  DIDDLKVTKIFVDEGPSMKRIMPRAKGR 88


>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
           subsp. Thermus thermophilus [TaxId: 271]}
          Length = 110

 Score = 91.4 bits (227), Expect = 4e-25
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
               E  L +  A V+E  +     P+A+GR
Sbjct: 62  HDALEDRLYVKAAYVDEGPAVL---PRARGR 89


>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 75.4 bits (185), Expect = 2e-18
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 31/127 (24%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------ 119
           + +      A  R   MS    + +  +I+G++  E +  LE                  
Sbjct: 7   EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV 66

Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
                         P +A      L+ +A  N   + GF+  ++ I     ++    +  
Sbjct: 67  GHKSKVDGWDAGRYPEKASKAFLDLLENAVGNA-DHQGFDGEAMTIKHVAAHKVGEQQGR 125

Query: 168 RPKAQGR 174
           +P+A GR
Sbjct: 126 KPRAMGR 132


>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage
           looper(Trichoplusia ni), H chain [TaxId: 7111]}
          Length = 191

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 82  KAEVSASARYLHMSAHKVRRVID------QIRGRSYEETLMILELMPYR 124
           + EV AS +YL M AH  + V++           + EE    ++L+ Y 
Sbjct: 30  QMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYL 78


>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
           [TaxId: 197]}
          Length = 165

 Score = 23.8 bits (51), Expect = 9.8
 Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 82  KAEVSASARYLHMSAH----KVRRVIDQIRGRSYEE---TLMILELMPYRACYPIFKLIY 134
             E+ A+  YL MS+      +      +   + EE      ++  +     +   + + 
Sbjct: 15  NKEMYAANLYLSMSSWCYENSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVELQEVK 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 588,771
Number of extensions: 24044
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 8
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)