Query 030581
Match_columns 175
No_of_seqs 179 out of 1124
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 15:54:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03006 carbonate dehydratase 100.0 9E-40 1.9E-44 286.1 7.5 160 1-172 2-162 (301)
2 PLN03014 carbonic anhydrase 100.0 4.5E-35 9.7E-40 260.3 10.5 140 28-172 67-210 (347)
3 PLN03019 carbonic anhydrase 100.0 9.3E-35 2E-39 257.0 9.8 129 39-172 77-205 (330)
4 PLN00416 carbonate dehydratase 100.0 1.7E-31 3.7E-36 229.6 9.8 126 39-172 5-130 (258)
5 PRK15219 carbonic anhydrase; P 99.9 1.5E-24 3.2E-29 185.4 5.9 84 84-168 51-137 (245)
6 PLN02154 carbonic anhydrase 99.9 6.7E-24 1.5E-28 185.4 8.4 99 68-172 58-156 (290)
7 COG0288 CynT Carbonic anhydras 99.9 1E-23 2.2E-28 176.2 6.4 73 88-160 2-75 (207)
8 cd00884 beta_CA_cladeB Carboni 99.9 1.9E-23 4.2E-28 172.2 5.6 77 96-172 1-77 (190)
9 PRK10437 carbonic anhydrase; P 99.9 3.8E-23 8.2E-28 174.5 7.0 72 89-160 3-74 (220)
10 cd00883 beta_CA_cladeA Carboni 99.9 3.5E-23 7.5E-28 168.9 4.2 64 97-160 1-64 (182)
11 cd03378 beta_CA_cladeC Carboni 99.9 5.5E-23 1.2E-27 165.2 4.5 81 86-166 1-84 (154)
12 KOG1578 Predicted carbonic anh 99.8 1.5E-20 3.2E-25 163.0 3.5 109 40-165 30-138 (276)
13 cd00382 beta_CA Carbonic anhyd 99.6 1.1E-16 2.3E-21 122.9 4.4 41 119-159 1-41 (119)
14 cd03379 beta_CA_cladeD Carboni 99.6 6.8E-16 1.5E-20 121.4 1.3 45 119-163 1-45 (142)
15 PF00484 Pro_CA: Carbonic anhy 99.5 5.6E-15 1.2E-19 115.4 3.2 37 123-159 1-37 (153)
16 KOG1578 Predicted carbonic anh 94.7 0.0012 2.5E-08 58.3 -5.3 67 93-162 3-85 (276)
17 PF01986 DUF123: Domain of unk 21.0 51 0.0011 25.0 1.1 16 123-139 81-96 (99)
No 1
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=9e-40 Score=286.09 Aligned_cols=160 Identities=48% Similarity=0.811 Sum_probs=135.6
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCcceeeCCCccchhhHHHHHHHHHHhhhc-ccccccccccchhhhhhhcccccch
Q 030581 1 MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKS-SGFKLKGWRHSEGITQEFQVDKLET 79 (175)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~A~~~~~~~t~eL~~~~~~~ 79 (175)
+|+|+++|||+|||+|+|+. ++..+.++++..+ ...|++||...+|++ .++..+|++|+++||+||+....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 74 (301)
T PLN03006 2 AATPTHFSVSHDPFSSTSLL---NLQTQAIFGPNHS---LKTTQLRIPASFRRKATNLQVMASGKTPGLTQEANGVAID- 74 (301)
T ss_pred CCCCCCcccccCCcchhhhh---ccCcceeecCCcc---cceeEecccccccccccchhhhhhhchHHHHHHHhhccCC-
Confidence 47899999999999999996 2222445555543 444669998888775 488899999999999999865422
Q ss_pred hhccCCHHHHHHHHHHHHHHhhhhhcccChHHHHhhhcCCCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCC
Q 030581 80 AAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPC 159 (175)
Q Consensus 80 ~~~~~~~~~~l~~Ll~GN~rF~~~~~~~~~~~~~~la~gQ~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~ 159 (175)
..++.+++++|++||.+|+..++.+++++|+.+++||+|+++||+||||||+|+.|||++|||+||||||||+|+|+
T Consensus 75 ---~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~ 151 (301)
T PLN03006 75 ---RQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPY 151 (301)
T ss_pred ---CCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCc
Confidence 23478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCccc
Q 030581 160 EGNYYFDELDPSI 172 (175)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (175)
+.+. ||+.++|
T Consensus 152 d~~~--~~~~aSL 162 (301)
T PLN03006 152 ESGP--TETKAAL 162 (301)
T ss_pred cccc--cchhhhH
Confidence 8743 6666654
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=4.5e-35 Score=260.30 Aligned_cols=140 Identities=36% Similarity=0.624 Sum_probs=121.0
Q ss_pred ceeeCCCccch----hhHHHHHHHHHHhhhcccccccccccchhhhhhhcccccchhhccCCHHHHHHHHHHHHHHhhhh
Q 030581 28 TQIFGPKFKFR----QIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQ 103 (175)
Q Consensus 28 ~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~l~~~A~~~~~~~t~eL~~~~~~~~~~~~~~~~~l~~Ll~GN~rF~~~ 103 (175)
+.||-+..+-+ -++++|.+|+|||++|++|+.+|++|++++|+||+....+ ...+++++++|++||++|+..
T Consensus 67 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~lerL~~GN~rF~~~ 142 (347)
T PLN03014 67 APIIAPYWSEEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSS----DKKAFDPVETIKQGFIKFKKE 142 (347)
T ss_pred CcccCchhHhhhchhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCC----CCCCcCHHHHHHHHHHHHHhh
Confidence 45565554222 3899999999999999999999999999999999964211 135688999999999999999
Q ss_pred hcccChHHHHhhhcCCCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCCCCCccccCCccc
Q 030581 104 KFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCEGNYYFDELDPSI 172 (175)
Q Consensus 104 ~~~~~~~~~~~la~gQ~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~~~~~~~~~~~~~ 172 (175)
.+.+++++|+.+++||+|+++||+||||||+|+.|||++|||+|||||+||+|++++.. .++++..+|
T Consensus 143 ~~~~~~~~~~~La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~-~~~~v~asL 210 (347)
T PLN03014 143 KYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKV-KYGGVGAAI 210 (347)
T ss_pred ccccCHHHHHhhccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCccccc-ccccchhHH
Confidence 88899999999999999999999999999999999999999999999999999998853 556665554
No 3
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=9.3e-35 Score=256.98 Aligned_cols=129 Identities=37% Similarity=0.643 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHhhhcccccccccccchhhhhhhcccccchhhccCCHHHHHHHHHHHHHHhhhhhcccChHHHHhhhcC
Q 030581 39 QIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADG 118 (175)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~l~~~A~~~~~~~t~eL~~~~~~~~~~~~~~~~~l~~Ll~GN~rF~~~~~~~~~~~~~~la~g 118 (175)
-+++||.+|+|||++|++|+.+|++|++++|+||++.... ...+++++++|++||++|+...+.+++++|..++.|
T Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La~g 152 (330)
T PLN03019 77 SYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSS----DSKSFDPVERIKEGFVTFKKEKYETNPALYGELAKG 152 (330)
T ss_pred hHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCC----CCchhHHHHHHHHHHHHHHhccccccHHHHHhhccC
Confidence 3899999999999999999999999999999999974321 245799999999999999999888899999999999
Q ss_pred CCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCCCCCccccCCccc
Q 030581 119 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCEGNYYFDELDPSI 172 (175)
Q Consensus 119 Q~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~~~~~~~~~~~~~ 172 (175)
|+|+++||+||||||+|+.|||++|||+||||||||+|++++. ..+|++..+|
T Consensus 153 Q~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~-~~~~~v~aSI 205 (330)
T PLN03019 153 QSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDK-VKYAGVGAAI 205 (330)
T ss_pred CCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCccc-ccccccchhH
Confidence 9999999999999999999999999999999999999999885 4677776655
No 4
>PLN00416 carbonate dehydratase
Probab=99.97 E-value=1.7e-31 Score=229.59 Aligned_cols=126 Identities=35% Similarity=0.632 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHhhhcccccccccccchhhhhhhcccccchhhccCCHHHHHHHHHHHHHHhhhhhcccChHHHHhhhcC
Q 030581 39 QIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADG 118 (175)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~l~~~A~~~~~~~t~eL~~~~~~~~~~~~~~~~~l~~Ll~GN~rF~~~~~~~~~~~~~~la~g 118 (175)
-+++++.+|.++|+.++.++.+++.++.-++++|++.. .+|.+++++|++||+||+..++.+++++|+.++.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~g 77 (258)
T PLN00416 5 SYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-------SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKT 77 (258)
T ss_pred cHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccC
Confidence 37899999999999999999999999999999999873 57999999999999999999888889999999999
Q ss_pred CCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCCCCCccccCCccc
Q 030581 119 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCEGNYYFDELDPSI 172 (175)
Q Consensus 119 Q~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~~~~~~~~~~~~~ 172 (175)
|+|+++||+||||||+|+.|||.+|||+|||||+||+|++++.. .+|++..+|
T Consensus 78 Q~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~-~~~~~~asL 130 (258)
T PLN00416 78 QTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQK-RHSGVGAAV 130 (258)
T ss_pred CCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCcccc-ccccchhHH
Confidence 99999999999999999999999999999999999999998763 356655543
No 5
>PRK15219 carbonic anhydrase; Provisional
Probab=99.90 E-value=1.5e-24 Score=185.44 Aligned_cols=84 Identities=21% Similarity=0.192 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHhhhhhcccChHHH---HhhhcCCCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCC
Q 030581 84 ENECDFFDKMKHRFLSFKKQKFMENLEHY---QNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCE 160 (175)
Q Consensus 84 ~~~~~~l~~Ll~GN~rF~~~~~~~~~~~~---~~la~gQ~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~ 160 (175)
.+|++++++|++||++|+++.+. .++++ ..+++||+|+++||+||||||+||.|||.+|||+||+||+||+|+++.
T Consensus 51 ~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~~~ 129 (245)
T PRK15219 51 MTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISNDDL 129 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCcch
Confidence 57999999999999999998764 34433 235789999999999999999999999999999999999999999876
Q ss_pred CCCccccC
Q 030581 161 GNYYFDEL 168 (175)
Q Consensus 161 ~~~~~~~~ 168 (175)
.++.+|++
T Consensus 130 ~~slEyAv 137 (245)
T PRK15219 130 LGSMEFAC 137 (245)
T ss_pred hhHHHHHH
Confidence 66666654
No 6
>PLN02154 carbonic anhydrase
Probab=99.90 E-value=6.7e-24 Score=185.42 Aligned_cols=99 Identities=53% Similarity=0.926 Sum_probs=83.4
Q ss_pred hhhhhcccccchhhccCCHHHHHHHHHHHHHHhhhhhcccChHHHHhhhcCCCCceEEEeecCCCCCcccccCCCCCceE
Q 030581 68 ITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAF 147 (175)
Q Consensus 68 ~t~eL~~~~~~~~~~~~~~~~~l~~Ll~GN~rF~~~~~~~~~~~~~~la~gQ~P~alVItCSDSRV~Pe~Ifg~~pGDlF 147 (175)
.+.+|..... +.....+.+++|++||++|+..++..++++|+.++.||+|+++||+|+||||+|+.|||.+|||+|
T Consensus 58 ~~~~~~~~~~----~~~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlF 133 (290)
T PLN02154 58 IREEFMDLNR----ETETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAF 133 (290)
T ss_pred hhHHHHhccc----CcchhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEE
Confidence 4445554432 235566889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcCCCCCCCCccccCCccc
Q 030581 148 IVRNVANMVPPCEGNYYFDELDPSI 172 (175)
Q Consensus 148 VVRNaGNvV~p~~~~~~~~~~~~~~ 172 (175)
|+||+||+|++++.+. |++..+|
T Consensus 134 vvRN~GNiv~~~~~g~--~~~~asl 156 (290)
T PLN02154 134 TIRNVANLVTPVQNGP--TETNSAL 156 (290)
T ss_pred EEeccCCccCCccCCc--cchhhHH
Confidence 9999999999987642 5554443
No 7
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1e-23 Score=176.20 Aligned_cols=73 Identities=36% Similarity=0.638 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhhhhcccChHHHHhhh-cCCCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCC
Q 030581 88 DFFDKMKHRFLSFKKQKFMENLEHYQNLA-DGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCE 160 (175)
Q Consensus 88 ~~l~~Ll~GN~rF~~~~~~~~~~~~~~la-~gQ~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~ 160 (175)
..++.|++||++|.+..+...+.+|+.+. .+|+|+++||+||||||+||.|||.+|||+||+||+||+|++++
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~ 75 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD 75 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc
Confidence 47889999999999998888899999876 56999999999999999999999999999999999999999865
No 8
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.88 E-value=1.9e-23 Score=172.20 Aligned_cols=77 Identities=48% Similarity=0.768 Sum_probs=69.5
Q ss_pred HHHHhhhhhcccChHHHHhhhcCCCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCCCCCccccCCccc
Q 030581 96 RFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCEGNYYFDELDPSI 172 (175)
Q Consensus 96 GN~rF~~~~~~~~~~~~~~la~gQ~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~~~~~~~~~~~~~ 172 (175)
||++|+...+.+++++|++++.||+|+++||+||||||+|+.|||.+|||+||+||+||+|++++.....+++.++|
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asl 77 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAI 77 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhH
Confidence 78999998888899999999999999999999999999999999999999999999999999987655556665554
No 9
>PRK10437 carbonic anhydrase; Provisional
Probab=99.88 E-value=3.8e-23 Score=174.51 Aligned_cols=72 Identities=35% Similarity=0.577 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhhhhhcccChHHHHhhhcCCCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCC
Q 030581 89 FFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCE 160 (175)
Q Consensus 89 ~l~~Ll~GN~rF~~~~~~~~~~~~~~la~gQ~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~ 160 (175)
.+++|++||++|+...+..++++|+.++.+|+|+++||+||||||+|+.|||.+|||+||+||+||+|++++
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~ 74 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTD 74 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCC
Confidence 578999999999998887899999999999999999999999999999999999999999999999998765
No 10
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.87 E-value=3.5e-23 Score=168.91 Aligned_cols=64 Identities=39% Similarity=0.760 Sum_probs=61.3
Q ss_pred HHHhhhhhcccChHHHHhhhcCCCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCC
Q 030581 97 FLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCE 160 (175)
Q Consensus 97 N~rF~~~~~~~~~~~~~~la~gQ~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~ 160 (175)
|++|....+.+.+++|+.+..||+|+++||+||||||+|+.|||.+|||+||+||+||+|++++
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~ 64 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTD 64 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCC
Confidence 6889998888999999999999999999999999999999999999999999999999999874
No 11
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.87 E-value=5.5e-23 Score=165.21 Aligned_cols=81 Identities=27% Similarity=0.371 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhhhhhccc---ChHHHHhhhcCCCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCCCC
Q 030581 86 ECDFFDKMKHRFLSFKKQKFME---NLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCEGN 162 (175)
Q Consensus 86 ~~~~l~~Ll~GN~rF~~~~~~~---~~~~~~~la~gQ~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~~~ 162 (175)
|++++++|++||++|.+.+... .++.|..++++|+|+++||+||||||+|+.+||.+|||+||+||+||+|++...+
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~~~~~ 80 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDDDVLG 80 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccChhHHH
Confidence 4689999999999999875421 2567889999999999999999999999999999999999999999999876544
Q ss_pred Cccc
Q 030581 163 YYFD 166 (175)
Q Consensus 163 ~~~~ 166 (175)
+-++
T Consensus 81 sl~y 84 (154)
T cd03378 81 SLEY 84 (154)
T ss_pred HHHH
Confidence 4333
No 12
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.5e-20 Score=162.98 Aligned_cols=109 Identities=28% Similarity=0.418 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhhhcccccccccccchhhhhhhcccccchhhccCCHHHHHHHHHHHHHHhhhhhcccChHHHHhhhcCC
Q 030581 40 IGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQ 119 (175)
Q Consensus 40 ~~~~~~~l~~~~~~~~~l~~~A~~~~~~~t~eL~~~~~~~~~~~~~~~~~l~~Ll~GN~rF~~~~~~~~~~~~~~la~gQ 119 (175)
++.++..+.++|-++.++ +|++++.++|++ .+.+++++++|..|.++.+..+|..|..++++|
T Consensus 30 ~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------------~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~q 92 (276)
T KOG1578|consen 30 AVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------------FDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQ 92 (276)
T ss_pred HHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------------cchHHHHHhhHhhhccccCCCChhhhHHHhccC
Confidence 566777888889888888 899999999993 247889999999999999999999999999999
Q ss_pred CCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCCCCCcc
Q 030581 120 APKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCEGNYYF 165 (175)
Q Consensus 120 ~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~~~~~~ 165 (175)
+|+.+||+|+||||+|++|++++|||+|++||++|+|+|.+..++.
T Consensus 93 sp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~ 138 (276)
T KOG1578|consen 93 SPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPT 138 (276)
T ss_pred CCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcc
Confidence 9999999999999999999999999999999999999998775543
No 13
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.65 E-value=1.1e-16 Score=122.91 Aligned_cols=41 Identities=54% Similarity=1.032 Sum_probs=39.9
Q ss_pred CCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCC
Q 030581 119 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPC 159 (175)
Q Consensus 119 Q~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~ 159 (175)
|+|+++||+|||||++|+.+||.+|||+||+||+||+|++.
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~ 41 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPY 41 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCC
Confidence 79999999999999999999999999999999999999985
No 14
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.56 E-value=6.8e-16 Score=121.36 Aligned_cols=45 Identities=29% Similarity=0.504 Sum_probs=40.7
Q ss_pred CCCceEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCCCCCC
Q 030581 119 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCEGNY 163 (175)
Q Consensus 119 Q~P~alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~~~~~ 163 (175)
++++++||+||||||+|+.+||.+|||+||+||+||+|+++..++
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~~~~~s 45 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTDDAIRS 45 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCHhHHHH
Confidence 468999999999999999999999999999999999999754443
No 15
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=99.52 E-value=5.6e-15 Score=115.38 Aligned_cols=37 Identities=51% Similarity=1.021 Sum_probs=31.7
Q ss_pred eEEEeecCCCCCcccccCCCCCceEEEeccCCcCCCC
Q 030581 123 FMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPC 159 (175)
Q Consensus 123 alVItCSDSRV~Pe~Ifg~~pGDlFVVRNaGNvV~p~ 159 (175)
++||+|||||++|+.+||.+|||+||+||+||+|++.
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~ 37 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPP 37 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCcc
Confidence 5899999999999999999999999999999999776
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=94.74 E-value=0.0012 Score=58.29 Aligned_cols=67 Identities=22% Similarity=0.390 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhhcccChHHHHhhhcCCCCceEEEeecCCCCCcccc----------------cCCCCCceEEEeccCCcC
Q 030581 93 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNI----------------LGFQPGEAFIVRNVANMV 156 (175)
Q Consensus 93 Ll~GN~rF~~~~~~~~~~~~~~la~gQ~P~alVItCSDSRV~Pe~I----------------fg~~pGDlFVVRNaGNvV 156 (175)
|+.|..+|+.+...+ +-.++..-++|.+..++|+|||.-|..- +..+.||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 667788888775432 2255566689999999999999999876 667889999999999999
Q ss_pred CCCCCC
Q 030581 157 PPCEGN 162 (175)
Q Consensus 157 ~p~~~~ 162 (175)
+.....
T Consensus 80 ~~p~~f 85 (276)
T KOG1578|consen 80 PNPTLF 85 (276)
T ss_pred CChhhh
Confidence 876543
No 17
>PF01986 DUF123: Domain of unknown function DUF123; InterPro: IPR002837 This archaebacterial domain has no known function. In Methanocaldococcus jannaschii (Methanococcus jannaschii) it occurs with an endonuclease domain IPR003265 from INTERPRO.
Probab=20.99 E-value=51 Score=25.01 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=12.6
Q ss_pred eEEEeecCCCCCccccc
Q 030581 123 FMVIACADSRVCPSNIL 139 (175)
Q Consensus 123 alVItCSDSRV~Pe~If 139 (175)
+--++|||.+ +++++|
T Consensus 81 i~gFGaSDc~-c~SHLf 96 (99)
T PF01986_consen 81 IPGFGASDCR-CKSHLF 96 (99)
T ss_pred CCCCCCcCCC-CCcceE
Confidence 5568999999 667766
Done!