BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030582
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16594|TAF9_HUMAN Transcription initiation factor TFIID subunit 9 OS=Homo sapiens
GN=TAF9 PE=1 SV=1
Length = 264
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 102/162 (62%)
Query: 6 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCD 65
+ +P+DA+++ +LK MG+ EYEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69
Query: 66 DIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL 125
D++LA+Q + + SF+ PP R+ LL++A+ RN+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129
Query: 126 SIPKKQSAQEAEEMEEDEESTELSASQEQATDLPQQTPQRVS 167
+K+++ A + S S+ L TPQ +S
Sbjct: 130 KSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMS 171
>sp|Q8VI33|TAF9_MOUSE Transcription initiation factor TFIID subunit 9 OS=Mus musculus
GN=Taf9 PE=2 SV=1
Length = 264
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 102/162 (62%)
Query: 6 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCD 65
+ +P+DA+++ +LK MG+ EYEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69
Query: 66 DIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL 125
D++LA+Q + + SF+ PP R+ LL++A+ RN+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129
Query: 126 SIPKKQSAQEAEEMEEDEESTELSASQEQATDLPQQTPQRVS 167
+K++ A + S +S+ L TPQ +S
Sbjct: 130 KSLQKKAPAPAGRITVPRLSVGSVSSRPSTPTLGTPTPQTMS 171
>sp|Q17QQ4|TAF9_BOVIN Transcription initiation factor TFIID subunit 9 OS=Bos taurus
GN=TAF9 PE=2 SV=1
Length = 264
Score = 136 bits (342), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 92/133 (69%), Gaps = 1/133 (0%)
Query: 6 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCD 65
+ +P+DA+++ +LK MG+ EYEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69
Query: 66 DIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL 125
D++LA+Q + + SF+ PP R+ LL++A+ RN+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129
Query: 126 -SIPKKQSAQEAE 137
S+ KK SA
Sbjct: 130 KSLQKKASASAGR 142
>sp|Q5BKE0|TAF9_RAT Transcription initiation factor TFIID subunit 9 OS=Rattus
norvegicus GN=Taf9 PE=2 SV=1
Length = 264
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 102/162 (62%)
Query: 6 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCD 65
+ +P+DA+++ +LK MG+ EYEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69
Query: 66 DIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL 125
D++LA+Q + + SF+ PP R+ LL++A+ RN+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129
Query: 126 SIPKKQSAQEAEEMEEDEESTELSASQEQATDLPQQTPQRVS 167
+K++ A + S +S+ L TPQ +S
Sbjct: 130 KSLQKKAPTPAGRITVPRLSVGSVSSRPSTPTLGTPTPQAMS 171
>sp|Q6NZA9|TAF9B_MOUSE Transcription initiation factor TFIID subunit 9B OS=Mus musculus
GN=Taf9b PE=1 SV=2
Length = 249
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 6/164 (3%)
Query: 6 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCD 65
++ PRDA ++ +LK MG+ EYEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69
Query: 66 DIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL 125
D++LA+Q + + SF+ PP R+ LL++A+ +N+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129
Query: 126 SIPKKQSAQEAEEMEEDEESTELSASQEQATDLPQQTPQRVSFP 169
K+ + + LSA + T P PQ VS P
Sbjct: 130 KSLVKKGPNQGRLVP------RLSAVSSRPTTPPVAPPQAVSGP 167
>sp|Q62880|TAF9B_RAT Transcription initiation factor TFIID subunit 9B OS=Rattus
norvegicus GN=Taf9b PE=2 SV=2
Length = 258
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 85/120 (70%)
Query: 6 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCD 65
++ PRDA ++ +LK MG+ +YEPRVI+Q LE +RYV +L DA++YS HA K T+D D
Sbjct: 10 KNAPRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69
Query: 66 DIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL 125
D++LA+Q + + SF+ PP R+ LL++A+ +N+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129
>sp|Q5R7P7|TAF9B_PONAB Transcription initiation factor TFIID subunit 9B OS=Pongo abelii
GN=TAF9B PE=2 SV=1
Length = 251
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 6 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCD 65
++ PRDA ++ +LK MG+ EYEPRVI+Q LE +RYV +L DA++YS HA K +D D
Sbjct: 10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDAD 69
Query: 66 DIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL 125
D++LA+Q + + SF+ PP R+ LL++A+ +N+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129
Query: 126 SIPKKQSAQEAEEMEEDEESTELSASQEQATDLPQQTPQRVSFP 169
K+ + + + A + T TPQ VS P
Sbjct: 130 KSLIKKGPNQGRLVPR----LSVGAVSSKPTTPTIATPQTVSVP 169
>sp|Q9HBM6|TAF9B_HUMAN Transcription initiation factor TFIID subunit 9B OS=Homo sapiens
GN=TAF9B PE=1 SV=1
Length = 251
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 6 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCD 65
++ PRDA ++ +LK MG+ EYEPRVI+Q LE +RYV +L DA++YS HA K +D D
Sbjct: 10 KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDAD 69
Query: 66 DIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQL 125
D++LA+Q + + SF+ PP R+ LL++A+ +N+ PLP G LPP++ L +PNY+L
Sbjct: 70 DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129
Query: 126 SIPKKQSAQEAEEMEEDEESTELSASQEQATDLPQQTPQRVSFP 169
K+ + + + A + T TPQ VS P
Sbjct: 130 KSLIKKGPNQGRLVPR----LSVGAVSSKPTTPTIATPQTVSVP 169
>sp|Q27272|TAF9_DROME Transcription initiation factor TFIID subunit 9 OS=Drosophila
melanogaster GN=e(y)1 PE=1 SV=1
Length = 278
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 86/133 (64%), Gaps = 3/133 (2%)
Query: 8 LPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDI 67
+P+DA+++ S+LK + V+EYEPRV++Q LE +RYV +L DA+VY+ HA K TID DD+
Sbjct: 18 VPKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYANHARKKTIDLDDV 77
Query: 68 KLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNYQLSI 127
+LA + ++ SF+ P R VL ++A RN +PLP G+ LPP++ L NY+L
Sbjct: 78 RLATEVTLDKSFTGPLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRA 137
Query: 128 ---PKKQSAQEAE 137
PKK + E
Sbjct: 138 TNQPKKMTKSAVE 150
>sp|Q8SSI9|TAF9_ENCCU Transcription initiation factor TFIID subunit 9 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=TAF9 PE=1 SV=1
Length = 137
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 78/125 (62%)
Query: 1 MAEGDEDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKT 60
MA G+ PRDAK++ +L+S+G+EE EP+VI Q LE YRY DVL DA ++++H G+T
Sbjct: 1 MASGENLAPRDAKVISVILRSLGIEECEPKVIIQLLEFAYRYTTDVLEDALLFAKHTGRT 60
Query: 61 TIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLIS 120
I D+KLA+Q+KV F PP R+ L E++ N PL I +PP L++
Sbjct: 61 HITTSDVKLALQTKVGRHFVPPPPRQYLSEISTMVNSKPLTIPDGENLIRVPPSSSALLN 120
Query: 121 PNYQL 125
+Y++
Sbjct: 121 LDYEV 125
>sp|Q09869|TAF9_SCHPO Transcription initiation factor TFIID subunit 9
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf9 PE=1 SV=1
Length = 163
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 89/143 (62%), Gaps = 9/143 (6%)
Query: 9 PRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHA-GKTT-IDCDD 66
P+D +++ +L S+GV Y V Q L +RY ++ D+QVY+EH+ G+ I +D
Sbjct: 14 PKDVRLIHLILSSLGVPSYSQTVPLQLLTFAHRYTQQLIQDSQVYAEHSRGQNAPISVED 73
Query: 67 IKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLISPNY--- 123
++LAV S++N SF+ PP +E LLELA RN+ PLP+ + G LPPE+ L PN+
Sbjct: 74 VRLAVASQINHSFTGPPPKEFLLELAMERNRKPLPQIQPSYGFRLPPEKYCLTQPNWIVS 133
Query: 124 ---QLSIPKKQSAQEAEEMEEDE 143
Q + PK++++ ++ MEED+
Sbjct: 134 NETQQNQPKEENSSDS-RMEEDK 155
>sp|Q05027|TAF9_YEAST Transcription initiation factor TFIID subunit 9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF9 PE=1
SV=1
Length = 157
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 6 EDLPRDAKIVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAG-----KT 60
E+ PRD +++ LL S + +YE +V Q ++ +RY VL DA VY+++AG +
Sbjct: 27 EETPRDVRLLHLLLASQSIHQYEDQVPLQLMDFAHRYTQGVLKDALVYNDYAGSGNSAGS 86
Query: 61 TIDCDDIKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSISAPGIPLPPEQDTLIS 120
+ +DI+LA+ ++ F +E++L+LA RNK LP+ + G+ LPPE+ L +
Sbjct: 87 GLGVEDIRLAIAARTQYQFKPTAPKELMLQLAAERNKKALPQVMGTWGVRLPPEKYCLTA 146
Query: 121 PNYQLSIPK 129
+ L PK
Sbjct: 147 KEWDLEDPK 155
>sp|P61882|HARA_PYRFU Archaeal histone A OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=PF1831 PE=3 SV=1
Length = 67
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMGVE---EYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71
V L++ G E E +V+ ++LE Y ++V A ++ HAG+ T+ +DIKLA+
Sbjct: 9 VDRLIRKAGAERVSEQAAKVLAEYLE---EYAIEVAKKAVEFARHAGRKTVKVEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|P61881|HARA_PYRAB Archaeal histone A OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB03470 PE=3 SV=1
Length = 67
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMGVE---EYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71
V L++ G E E +V+ ++LE Y ++V A ++ HAG+ T+ +DIKLA+
Sbjct: 9 VDRLIRKAGAERVSEQAAKVLAEYLE---EYAIEVAKKAVEFARHAGRKTVKVEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|O74098|HARA_PYRHO Archaeal histone A OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1782.1
PE=1 SV=2
Length = 67
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMGVE---EYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71
V L++ G E E +V+ ++LE Y +++ A ++ HAG+ T+ +DIKLA+
Sbjct: 9 VDRLIRKAGAERVSEQAAKVLAEYLE---EYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|P50485|HARA_PYRSG Archaeal histone A OS=Pyrococcus sp. (strain GB-3a) GN=hpyA1 PE=3
SV=1
Length = 67
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMGVE---EYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71
V L++ G E E +++ ++LE Y ++V A ++ HAG+ T+ +DIKLA+
Sbjct: 9 VDRLIRKAGAERVSEEAAKILAEYLE---EYAIEVSKKAVEFARHAGRKTVKAEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|O28779|HAF2_ARCFU Probable archaeal histone A1-2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-2 PE=3 SV=1
Length = 67
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 15 VKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71
V L++ G E + + +EV Y + V A ++H+G+ T+ DDIKLA+
Sbjct: 9 VDRLIRKAGAERVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADDIKLAL 65
>sp|Q3E835|YO086_YEAST Uncharacterized protein YOL086W-A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YOL086W-A PE=1 SV=1
Length = 90
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 26 EYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQSK 74
+Y PR I+ LE+ Y + ++ +D Q ++ HAG+ ++ D+ L ++ +
Sbjct: 32 KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80
>sp|Q6QIY3|SCNAA_MOUSE Sodium channel protein type 10 subunit alpha OS=Mus musculus
GN=Scn10a PE=1 SV=2
Length = 1958
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 103 SISAPGIPLPPEQ--DTLISPNYQLSIPKKQSAQEAEEMEEDEESTELSASQEQATDLPQ 160
+++ P + P E D + PN +S+P + + +E+EED E S+ QE++ Q
Sbjct: 972 NLAKPALGGPKENHGDFITDPNVWVSVPIAEGESDLDELEEDVEHASQSSWQEESPKGQQ 1031
Query: 161 QTPQRV 166
+ Q+V
Sbjct: 1032 ELLQQV 1037
>sp|Q62968|SCNAA_RAT Sodium channel protein type 10 subunit alpha OS=Rattus norvegicus
GN=Scn10a PE=1 SV=1
Length = 1956
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 103 SISAPGIPLPPEQ--DTLISPNYQLSIPKKQSAQEAEEMEEDEESTELSASQE-----QA 155
+++ P + P E D + PN +S+P + + +E+EED E S+ QE Q
Sbjct: 972 NLTKPALSSPKENHGDFITDPNVWVSVPIAEGESDLDELEEDMEQASQSSWQEEDPKGQQ 1031
Query: 156 TDLPQ 160
LPQ
Sbjct: 1032 EQLPQ 1036
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMGVE---EYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71
V L++ G E E +V+ ++LE Y +++ A ++ HAG+ T+ +DIKLA+
Sbjct: 9 VDRLIRKAGAERVSEDAAKVLAEYLE---EYAIELSKKAVDFARHAGRKTVKAEDIKLAI 65
Query: 72 QS 73
++
Sbjct: 66 KA 67
>sp|P95669|HANA_THEZI Archaeal histone HAN1 subunit A OS=Thermococcus zilligii GN=han1A
PE=1 SV=3
Length = 67
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 15 VKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73
+ L++ G E E Y ++V A ++ HAG+ T+ +D++LAV++
Sbjct: 9 IDRLIRKAGAERVSEDAAKALAEYLEEYAIEVGKKATEFARHAGRKTVKAEDVRLAVKA 67
>sp|P11461|FATA_VIBA7 Ferric anguibactin receptor OS=Vibrio anguillarum (strain ATCC
68554 / 775) GN=fatA PE=3 SV=1
Length = 726
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 109 IPLPPEQDTLISPNYQLSIPKKQSAQEAEEMEEDEESTELSASQEQATDLPQQTPQRV 166
+P PP DTL+SP++ + + + E++ T A TD PQRV
Sbjct: 289 VPSPPSSDTLLSPSWAYNDSEDKGMMIRAELDLSNSVTAYGAVGASRTDFDSNVPQRV 346
>sp|Q6NRI8|CENPS_XENLA Centromere protein S OS=Xenopus laevis GN=apitd1 PE=2 SV=1
Length = 135
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 1 MAEG-DEDLPRDAK-------IVKSLLKSMGVE---EYEPRVIHQFLEVWYRYVVDVLTD 49
MAEG +E R + +V SL + + + ++ + I E+ +R D
Sbjct: 1 MAEGQEEHFSRTQRLKAAVHYVVGSLCQEVADDKEIDFSKQAIAAISEITFRQCESFAKD 60
Query: 50 AQVYSEHAGKTTIDCDDIKL 69
++++ HA +TTI+ DD+KL
Sbjct: 61 LEIFARHAKRTTINMDDVKL 80
>sp|Q9Y8I2|HARB_PYRKO Archaeal histone B OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkB PE=3 SV=1
Length = 67
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMG---VEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71
V L++ G V E +V+ + LE +++ A ++HAG+ T+ +DIKLA+
Sbjct: 9 VDRLIRKAGAARVSEEAAKVLAEHLE---EKALEIAKKAVALAQHAGRKTVKAEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|Q9EQH4|TAF8_MOUSE Transcription initiation factor TFIID subunit 8 OS=Mus musculus
GN=Taf8 PE=2 SV=1
Length = 308
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 14 IVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDI 67
+V SLL G E E + E+ Y+ ++ A+ Y EH +T DI
Sbjct: 38 VVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI 91
>sp|A7MAZ4|TAF8_BOVIN Transcription initiation factor TFIID subunit 8 OS=Bos taurus
GN=TAF8 PE=2 SV=1
Length = 310
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 14 IVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDI 67
+V SLL G E E + E+ Y+ ++ A+ Y EH +T DI
Sbjct: 40 VVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI 93
>sp|Q7Z7C8|TAF8_HUMAN Transcription initiation factor TFIID subunit 8 OS=Homo sapiens
GN=TAF8 PE=1 SV=1
Length = 310
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 14 IVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDI 67
+V SLL G E E + E+ Y+ ++ A+ Y EH +T DI
Sbjct: 40 VVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI 93
>sp|F1NPG5|CENPT_CHICK Centromere protein T OS=Gallus gallus GN=CENPT PE=1 SV=2
Length = 639
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 41 RYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQ 72
RY + +D + YS+HAG+ T++ D++L ++
Sbjct: 567 RYFKQISSDLEAYSQHAGRKTVEMADVELLMR 598
>sp|Q8N2Z9|CENPS_HUMAN Centromere protein S OS=Homo sapiens GN=APITD1 PE=1 SV=1
Length = 138
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 26 EYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKL 69
++ + I E+ +R + D ++++ HA +TTI+ +D+KL
Sbjct: 41 QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKL 84
>sp|Q76NW2|H4_DICDI Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1
Length = 108
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 15 VKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQ 72
++ L + GV+ + + V ++ +V+ D+ Y+EHAG+ T+ D+ A++
Sbjct: 40 IRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALK 97
>sp|Q28J24|TAF8_XENTR Transcription initiation factor TFIID subunit 8 OS=Xenopus
tropicalis GN=taf8 PE=2 SV=1
Length = 293
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 14 IVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDI 67
+V SLL G E E + E+ Y+ ++ A+ Y EH +T DI
Sbjct: 30 VVSSLLTEAGFESAEKAAVESLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDI 83
>sp|O59627|HARB_PYRFU Archaeal histone B OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=PF1722 PE=3 SV=2
Length = 67
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 15 VKSLLKSMG---VEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAV 71
V L++ G V E +V+ + LE +++ A ++HAG+ T+ +DIKLA+
Sbjct: 9 VDRLIRKAGAQRVSEQAAKVLAEHLE---EKAIEIAKKAVDLAKHAGRKTVKVEDIKLAI 65
Query: 72 QS 73
+S
Sbjct: 66 KS 67
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 42 YVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQ 72
Y + + A ++HAG+ T+ DDIKLA++
Sbjct: 40 YAMQIGKKAAELAKHAGRKTVKVDDIKLALR 70
>sp|Q9JH68|CAPSD_TASV1 Capsid polyprotein VP90 OS=Turkey astrovirus 1 GN=ORF2 PE=3 SV=1
Length = 671
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 40 YRYVVDVLTDAQVYSEHAGKTTIDCDDIKLA--VQSKVNSSFSQPPAREVLLELAKNRNK 97
Y V D D+++Y +G T+ D+ + Q VN + S A +
Sbjct: 350 YASVEDAAKDSRIYQPVSGTQTLAAGDVYVTQLTQPNVNEAGSTSLGFSPPTPPAPTGSY 409
Query: 98 IPLPKSISAPGIP 110
+PLP++ PGIP
Sbjct: 410 LPLPQAAGVPGIP 422
>sp|Q9V1F5|HARB_PYRAB Archaeal histone B OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB04720 PE=3 SV=1
Length = 67
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 15 VKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73
V L++ G + + E +++ A ++HAG+ T+ +DIKLA++S
Sbjct: 9 VDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIAKKAVDLAKHAGRKTVKVEDIKLAIRS 67
>sp|O74092|HARB_PYRHO Archaeal histone B OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1701.1
PE=3 SV=2
Length = 67
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 15 VKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73
V L++ G + + E +++ A ++HAG+ T+ +DIKLA++S
Sbjct: 9 VDRLIRKAGAQRVSEKAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKVEDIKLAIRS 67
>sp|Q7ZYA2|TAF8_XENLA Transcription initiation factor TFIID subunit 8 OS=Xenopus laevis
GN=taf8 PE=2 SV=1
Length = 293
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 14 IVKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDI 67
+V SLL G + E + E+ Y+ ++ A+ Y EH +T DI
Sbjct: 30 VVSSLLTEAGFDSAEKAAVESLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDI 83
>sp|P50486|HARB_PYRSG Archaeal histone B OS=Pyrococcus sp. (strain GB-3a) GN=hpyA2 PE=3
SV=2
Length = 67
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 15 VKSLLKSMGVEEYEPRVIHQFLEVWYRYVVDVLTDAQVYSEHAGKTTIDCDDIKLAVQS 73
V L++ G + + E +++ A ++HAG+ T+ +DIKLA++S
Sbjct: 9 VDRLIRKAGAQRVSEQAAKLLAEHLEEKALEIARKAVDLAKHAGRKTVKAEDIKLAIRS 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,044,665
Number of Sequences: 539616
Number of extensions: 2481282
Number of successful extensions: 12224
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 11878
Number of HSP's gapped (non-prelim): 411
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)