BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030583
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGS|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|C Chain C, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|D Chain D, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|E Chain E, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL++IKPD ++ N EI+ ++G I+ ++++L ++ A+ FYAEH R FF L
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ +MTSGPV+ VLE ENAI R L+G T+ K+A+ +IRA + N VHGSD
Sbjct: 64 VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAG---TIRADYAQSIDANAVHGSD 120
Query: 149 SPESAQREMSFFFQE 163
SPESA RE+++FF+E
Sbjct: 121 SPESAAREIAYFFEE 135
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|I Chain I, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|J Chain J, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|K Chain K, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|L Chain L, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|M Chain M, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|N Chain N, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|O Chain O, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|P Chain P, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL++IKPD ++ N EI+ ++G I+ ++++L ++ A+ FYAEH R FF L
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ +MTSGPV+ VLE ENAI R L+G T+ K+A+ +IRA + N VHGSD
Sbjct: 64 VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAG---TIRADYAQSIDANAVHGSD 120
Query: 149 SPESAQREMSFFFQE 163
SPESA RE+++FF E
Sbjct: 121 SPESAAREIAYFFAE 135
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|B Chain B, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|C Chain C, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|D Chain D, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|E Chain E, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|F Chain F, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|G Chain G, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|H Chain H, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTO|A Chain A, Orthorhombic Crystal Form C222 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|A Chain A, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|C Chain C, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTR|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTS|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
Length = 142
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 83/133 (62%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL ++KPD + +I ++ GF I ++ R + A FY H R FF L
Sbjct: 4 ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQEL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++M+SGPV+A VLE E+AI R +IGPTD+++A+ P+SIRA G D KN +H SD
Sbjct: 64 VEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASD 123
Query: 149 SPESAQREMSFFF 161
SPESAQ E+ F F
Sbjct: 124 SPESAQYEICFIF 136
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4DUT|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4EK2|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4EK2|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4HR2|A Chain A, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
pdb|4HR2|B Chain B, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
Length = 145
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 88/142 (61%), Gaps = 3/142 (2%)
Query: 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRS 83
GS+ E+TL++IKPD ++ N +I +G I+ R+ L A+ FYA H+ R
Sbjct: 3 GSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERP 62
Query: 84 FFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNC 143
FF L+++M SGPV+ VLE E+AI R L+G TD KKA+ +IRA + N
Sbjct: 63 FFKDLVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKG---TIRADFADSIDANA 119
Query: 144 VHGSDSPESAQREMSFFFQEMS 165
VHGSD+PE+A+ E++FFF EM+
Sbjct: 120 VHGSDAPETARVEIAFFFPEMN 141
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1NDP|B Chain B, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1KDN|A Chain A, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|B Chain B, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|C Chain C, Structure Of Nucleoside Diphosphate Kinase
pdb|2BEF|A Chain A, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|B Chain B, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|C Chain C, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|1BUX|A Chain A, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|B Chain B, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|C Chain C, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|A Chain A, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|B Chain B, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|C Chain C, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|D Chain D, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|E Chain E, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|F Chain F, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1F6T|A Chain A, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|C Chain C, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1HIY|A Chain A, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|B Chain B, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|C Chain C, Binding Of Nucleotides To Ndp Kinase
pdb|1S5Z|A Chain A, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|B Chain B, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|C Chain C, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|D Chain D, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|E Chain E, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|F Chain F, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1NDC|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Complexed
With Dtdp And Mg2+ At 2 A Resolution
Length = 155
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 21 LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80
+S V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHK 60
Query: 81 SRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSE 140
R FF L+ ++TSGPV+AMV E + + R +IG T+ S P SIR G+D
Sbjct: 61 ERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLA---SAPGSIRGDFGVDVG 117
Query: 141 KNCVHGSDSPESAQREMSFFFQ 162
+N +HGSDS ESA RE++ +F+
Sbjct: 118 RNIIHGSDSVESANREIALWFK 139
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q86|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q86|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q89|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q8U|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8V|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8Y|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
Length = 157
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 87/144 (60%), Gaps = 6/144 (4%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPD + N E+ I G ++ +++++ + A+T Y EH + F++ L
Sbjct: 2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
I ++TS PV AMV+E E+A+ R +IG T+ +A P SIR GL +N +HGSD
Sbjct: 62 ISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS---PGSIRGDLGLTVGRNIIHGSD 118
Query: 149 SPESAQREMSFFFQEMSSDEVTRH 172
S ESA+RE++ +F E +E+T +
Sbjct: 119 SLESAEREINLWFNE---NEITSY 139
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside
Diphosphate Kinase At 1,8 Angstroms Resolution
Length = 154
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 3/141 (2%)
Query: 22 SNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81
S V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 1 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 60
Query: 82 RSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEK 141
R FF L+ ++TSGPV+AMV E + + R +IG T+ S P SIR G+D +
Sbjct: 61 RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLA---SAPGSIRGDFGVDVGR 117
Query: 142 NCVHGSDSPESAQREMSFFFQ 162
N +HGSDS ESA RE++ +F+
Sbjct: 118 NIIHGSDSVESANREIALWFK 138
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase
Length = 150
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFF 85
V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH R FF
Sbjct: 1 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFF 60
Query: 86 SSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVH 145
L+ ++TSGPV+AMV E + + R +IG T++ S P SIR G+D +N +H
Sbjct: 61 GGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNSLA---SAPGSIRGDFGVDVGRNIIH 117
Query: 146 GSDSPESAQREMSFFFQ 162
GSDS ESA RE++ +F+
Sbjct: 118 GSDSVESANREIALWFK 134
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|B Chain B, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|C Chain C, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|D Chain D, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|E Chain E, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|F Chain F, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
Length = 136
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL +IKPDG+ EI I G +I ++ + + A YAEH + FF SL
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
++++TSGPV+A ++E AI R L G TD +A + P +IR L+++ N VHGSD
Sbjct: 63 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQA--AAPGTIRGDFALETQFNLVHGSD 120
Query: 149 SPESAQREMSFFF 161
S ESAQRE++ +F
Sbjct: 121 SAESAQREIALWF 133
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis
Length = 148
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
EKT M+KPDG+ + EI + GF ++ +++++ + A YAEH + FF L
Sbjct: 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGEL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ ++TSGPV AMV + E + R ++G T +A P +IR G+ KN +HGSD
Sbjct: 62 VDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA---PGTIRGDFGVTVAKNIIHGSD 118
Query: 149 SPESAQREMSFFFQE 163
S ESA+RE+ FF+E
Sbjct: 119 SLESAEREIGIFFKE 133
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside
Diphosphate Kinase
Length = 155
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 21 LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80
+S V KE+T + PDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 1 MSTNKVNKERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHK 60
Query: 81 SRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSE 140
R FF L+ ++TSGPV+AMV E + + R +IG T+ S P SIR G+D
Sbjct: 61 ERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLA---SAPGSIRGDFGVDVG 117
Query: 141 KNCVHGSDSPESAQREMSFFFQ 162
+N +HGSDS ESA RE++ +F+
Sbjct: 118 RNIIHGSDSVESANREIALWFK 139
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|B Chain B, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|C Chain C, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
Length = 155
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 21 LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80
+S V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHK 60
Query: 81 SRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSE 140
R FF L+ ++TSGPV+AMV E + + R +IG T+ S P SIR G+D
Sbjct: 61 ERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLA---SAPGSIRGDFGVDVG 117
Query: 141 KNCVHGSDSPESAQREMSFFFQ 162
+ +HGSDS ESA RE++ +F+
Sbjct: 118 RAIIHGSDSVESANREIALWFK 139
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|B Chain B, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|C Chain C, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|B Chain B, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|C Chain C, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1MN9|A Chain A, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|B Chain B, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|C Chain C, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|3FKB|A Chain A, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|B Chain B, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|C Chain C, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|D Chain D, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|E Chain E, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|F Chain F, Structure Of Ndpk H122g And Tenofovir-Diphosphate
Length = 155
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 21 LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80
+S V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHK 60
Query: 81 SRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSE 140
R FF L+ ++TSGPV+AMV E + + R +IG T+ S P SIR G+D
Sbjct: 61 ERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLA---SAPGSIRGDFGVDVG 117
Query: 141 KNCVHGSDSPESAQREMSFFFQ 162
+N + GSDS ESA RE++ +F+
Sbjct: 118 RNIIGGSDSVESANREIALWFK 139
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 155
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 21 LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80
+S V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHK 60
Query: 81 SRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSE 140
R FF L+ ++TSGPV+AMV E + + R +IG T+ S P SIR G+D
Sbjct: 61 ERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLA---SAPGSIRGDFGVDVG 117
Query: 141 KNCVHGSDSPESAQREMSFFFQ 162
+N + GSDS ESA RE++ +F+
Sbjct: 118 RNIIXGSDSVESANREIALWFK 139
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside
Diphosphate Kinase
Length = 155
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 21 LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80
+S V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHK 60
Query: 81 SRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSE 140
R FF L+ ++TSGPV+AMV E + + R +IG T+ S P SIR G+D
Sbjct: 61 ERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLA---SAPGSIRGDFGVDVG 117
Query: 141 KNCVHGSDSPESAQREMSFFFQ 162
+N + GSDS ESA RE++ +F+
Sbjct: 118 RNIIAGSDSVESANREIALWFK 139
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|2NCK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
Length = 144
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL++IKPDGL +I E G + R+ L + A+ FYA H +R FF L
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++M SGPV+ MVLE ENA+ R ++G T+ +A +IR +KN VHGSD
Sbjct: 63 VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAA---EGTIRKDFATSIDKNTVHGSD 119
Query: 149 SPESAQREMSFFFQE 163
S E+A+ E+++FF+E
Sbjct: 120 SLENAKIEIAYFFRE 134
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|B Chain B, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|C Chain C, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|D Chain D, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|E Chain E, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|F Chain F, Escherichia Coli Nucleoside Diphosphate Kinase
Length = 142
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T ++IKP+ ++ N I +GF I+ +++ L + A+ FYAEH + FF L
Sbjct: 3 ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++MTSGP++ VLE ENA+ R L+G T+ A ++RA +N HGSD
Sbjct: 63 VEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAG---TLRADYADSLTENGTHGSD 119
Query: 149 SPESAQREMSFFFQE 163
S ESA RE+++FF E
Sbjct: 120 SVESAAREIAYFFGE 134
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase
Length = 155
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 21 LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80
+S V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHK 60
Query: 81 SRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSE 140
R FF L+ ++TSGPV+AMV E + + R +IG T+ S P SIR G+D
Sbjct: 61 ERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLA---SAPGSIRGDFGVDVG 117
Query: 141 KNCVHGSDSPESAQREMSFFFQ 162
+N + GSDS ESA RE++ +F+
Sbjct: 118 RNIICGSDSVESANREIALWFK 139
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKJ|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKK|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKK|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKL|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
pdb|1WKL|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
Length = 137
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPDG+ EI GF I +++++ ++ A+ YAEH + FF L
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
++++TSGPV+AMVLE + + R ++G T K A P +IR ++N +HGS
Sbjct: 62 VRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDAL---PGTIRGDFATTIDENVIHGSA 118
Query: 149 SPESAQREMSFFFQ 162
+ E AQRE++ FF+
Sbjct: 119 TLEDAQREIALFFR 132
>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside,
Diphosphate Kinases
Length = 150
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFF 85
V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH R FF
Sbjct: 1 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFF 60
Query: 86 SSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVH 145
L+ ++TSGPV+AMV E + + R +IG T+ S SIR G+D +N +H
Sbjct: 61 GGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLA---SAGGSIRGDFGVDVGRNIIH 117
Query: 146 GSDSPESAQREMSFFFQ 162
GSDS ESA RE++ +F+
Sbjct: 118 GSDSVESANREIALWFK 134
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
Length = 174
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 8/151 (5%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E E+T M+KPDG+ +I + G ++ + +++D++ A+ Y EH + FF
Sbjct: 23 EHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFD 82
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHG 146
L+ ++TSGPV AMV E ++A R ++G TD + S P +IR GLD +N +HG
Sbjct: 83 GLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAE---SAPGTIRGDYGLDLGRNVIHG 139
Query: 147 SDSPESA--QREMSFFFQEMSSDEVTRHDEL 175
SD + +RE+ FF E DE+ D++
Sbjct: 140 SDHEDEGANEREIELFFDE---DELVDWDQI 167
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F4A|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
Length = 157
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Query: 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRS 83
GS+ E+T +KPDG+ N EI K G+ ++ ++++ E+ AK Y + +S+
Sbjct: 3 GSMPSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKP 62
Query: 84 FFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNC 143
F+S L+ Y +SGP++ MV E + R L+G T+ S P +IR +D +N
Sbjct: 63 FYSGLVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPAD---SLPGTIRGDFAVDVGRNV 119
Query: 144 VHGSDSPESAQREMSFFFQ 162
HGSDS ESA+RE++F+F+
Sbjct: 120 CHGSDSVESAKREIAFWFK 138
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S59|A Chain A, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|B Chain B, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|C Chain C, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|D Chain D, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|E Chain E, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|F Chain F, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
Length = 153
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T M+KPDG+ EI + GF ++ ++ + ++ A+ Y + S++SFF +L
Sbjct: 6 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNL 65
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
I+Y+TSGPV+ M E + R LIG TD +A+ P +IR + + +N VHGSD
Sbjct: 66 IEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVHGSD 122
Query: 149 SPESAQREMSFFFQE 163
SPE+ +RE+ +F+E
Sbjct: 123 SPENGKREIGLWFKE 137
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|B Chain B, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|C Chain C, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|D Chain D, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
Length = 140
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
EKTL++IKPD + +I +G I + V+L ++ A+ FYA H R FF L
Sbjct: 5 EKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDL 64
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++M SGPV+ +LE E A+ R L+G T+ K+AK +IRA + N VHGSD
Sbjct: 65 VEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAG---TIRADFAESIDANAVHGSD 121
Query: 149 SPESAQREMSFFFQ 162
S E+A+ E+ FFF+
Sbjct: 122 SLENAKIEIEFFFK 135
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
Length = 181
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T M+KPDG+ +I + G ++ + +R+DE+ A YAEH + FF L
Sbjct: 26 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 85
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ ++TSGPV AMV E +A R L+G TDA+ A P +IR G D N +HGSD
Sbjct: 86 VSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHNLIHGSD 142
Query: 149 SPESA--QREMSFFFQE 163
+ +RE++ FF +
Sbjct: 143 HEDEGANEREIALFFDD 159
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|G Chain G, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|H Chain H, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|I Chain I, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
Length = 164
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T M+KPDG+ +I + G ++ + +R+DE+ A YAEH + FF L
Sbjct: 9 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 68
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ ++TSGPV AMV E +A R L+G TDA+ A P +IR G D N +HGSD
Sbjct: 69 VSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHNLIHGSD 125
Query: 149 SPESA--QREMSFFFQE 163
+ +RE++ FF +
Sbjct: 126 HEDEGANEREIALFFDD 142
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|B Chain B, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
Length = 151
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + +R ED K Y + R FF+ L
Sbjct: 4 ERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N +HGSD
Sbjct: 64 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 120
Query: 149 SPESAQREMSFFFQ 162
S ESA++E++ +F+
Sbjct: 121 SVESAEKEIALWFR 134
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
pdb|1MN7|B Chain B, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
Length = 155
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 21 LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80
+S V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHK 60
Query: 81 SRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSE 140
R +F L+ ++TSGPV+AMV E + + R +IG T+ S P SIR G+D
Sbjct: 61 ERPWFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLA---SAPGSIRGDFGVDVG 117
Query: 141 KNCVHGSDSPESAQREMSFFFQ 162
++ + GSDS ESA RE++ +F+
Sbjct: 118 RSIIGGSDSVESANREIALWFK 139
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|B Chain B, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|C Chain C, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|D Chain D, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|E Chain E, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|F Chain F, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
Length = 152
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + +R ED K Y + R FF+ L
Sbjct: 5 ERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGL 64
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N +HGSD
Sbjct: 65 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 121
Query: 149 SPESAQREMSFFFQ 162
S ESA++E++ +F
Sbjct: 122 SVESAEKEIALWFH 135
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T +KPDG+ EI + GF ++ ++V+ E+ + YAE R F+ L
Sbjct: 22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRL 81
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV + + + RALIG T+ A P +IR ++ KN +HGSD
Sbjct: 82 VKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP---PGTIRGDFCIEVGKNLIHGSD 138
Query: 149 SPESAQREMSFFFQ 162
S ESA+RE++ +F+
Sbjct: 139 SVESARREIALWFR 152
>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase
Length = 155
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 3/141 (2%)
Query: 22 SNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81
S V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 82 RSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEK 141
R FF L+ ++TSGPV+A V E + + R IG T+ S P SIR G+D +
Sbjct: 62 RPFFGGLVSFITSGPVVAXVFEGKGVVASARLXIGVTNPLA---SAPGSIRGDFGVDVGR 118
Query: 142 NCVHGSDSPESAQREMSFFFQ 162
N + GSDS ESA RE++ +F+
Sbjct: 119 NIIXGSDSVESANREIALWFK 139
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|B Chain B, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|C Chain C, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|D Chain D, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|E Chain E, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|F Chain F, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
Length = 149
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPDG+ E+ + GF++ +++ ++ A+ Y + SS+SFFS L
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ Y+ SGPV+AM+ E +N + R +IG T+ S P +IR +D +N +HGSD
Sbjct: 62 VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAA---SEPGTIRGDFAIDIGRNVIHGSD 118
Query: 149 SPESAQREMSFFFQE 163
S ESA++E++ +F +
Sbjct: 119 SVESARKEIALWFPD 133
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|B Chain B, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|C Chain C, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|D Chain D, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|E Chain E, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|F Chain F, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|3BBB|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBF|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
Length = 151
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + +R E+ K Y + R FF L
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N +HGSD
Sbjct: 64 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 120
Query: 149 SPESAQREMSFFFQ 162
S +SA++E+S +F+
Sbjct: 121 SVKSAEKEISLWFK 134
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|L Chain L, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|T Chain T, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|U Chain U, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|N Chain N, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|O Chain O, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
Length = 152
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + +R E+ K Y + R FF L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 64
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N +HGSD
Sbjct: 65 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 121
Query: 149 SPESAQREMSFFFQ 162
S +SA++E+S +F+
Sbjct: 122 SVKSAEKEISLWFK 135
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKY|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
Length = 161
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T +KPDG+ N EI K G+ ++ ++++ E+ AK Y + +S+ F+S L
Sbjct: 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 71
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ Y +SGP++ MV E + R L+G T+ S P +IR +D +N HGSD
Sbjct: 72 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPAD---SLPGTIRGDFAVDVGRNVCHGSD 128
Query: 149 SPESAQREMSFFFQ 162
S ESA+RE++F+F+
Sbjct: 129 SVESAKREIAFWFK 142
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1
pdb|3L7U|B Chain B, Crystal Structure Of Human Nm23-H1
pdb|3L7U|C Chain C, Crystal Structure Of Human Nm23-H1
Length = 172
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + ++ ED K Y + R FF+ L
Sbjct: 25 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGL 84
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N +HGSD
Sbjct: 85 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 141
Query: 149 SPESAQREMSFFFQ 162
S ESA++E+ +F
Sbjct: 142 SVESAEKEIGLWFH 155
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|B Chain B, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|C Chain C, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|D Chain D, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|E Chain E, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|F Chain F, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|2HVD|A Chain A, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|B Chain B, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|C Chain C, Human Nucleoside Diphosphate Kinase A Complexed With Adp
Length = 152
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + ++ ED K Y + R FF+ L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGL 64
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N +HGSD
Sbjct: 65 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 121
Query: 149 SPESAQREMSFFFQ 162
S ESA++E+ +F
Sbjct: 122 SVESAEKEIGLWFH 135
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2CWK|B Chain B, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2DXD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXE|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXE|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXF|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DXF|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DY9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DY9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DYA|A Chain A, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
pdb|2DYA|B Chain B, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
Length = 160
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E E+TL +IKPD + EI + G I+ +++ +D + A+ Y EH + FF
Sbjct: 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFK 65
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGL---DSEKNC 143
+LI Y+T PV+ MVLE A+ R + G TD K A P +IR GL D+ N
Sbjct: 66 ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAA---PGTIRGDFGLEVSDAICNV 122
Query: 144 VHGSDSPESAQREMSFFFQ 162
+H SDS ESA+RE+S FF+
Sbjct: 123 IHASDSKESAEREISLFFK 141
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T +KPDG+ EI G+ ++ ++++ + A+ Y + S+ FF +L
Sbjct: 4 ERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPAL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KY +SGP++ MV E +N + R L+G T+ S P +IR +D +N HGSD
Sbjct: 64 VKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPAD---SQPGTIRGDFAVDVGRNVCHGSD 120
Query: 149 SPESAQREMSFFFQEMSSDEVT 170
S ESA+RE++F+F+ +DE+
Sbjct: 121 SVESAEREIAFWFK---ADEIA 139
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87
+E+TL +KPDG+ ++ + GF+++ ++++ E Y + + F+ +
Sbjct: 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPA 83
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
LI+YM+SGPV+AMV E N + RA+IG TD+ +A P +IR + +N +H S
Sbjct: 84 LIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAA---PGTIRGDFSVHISRNVIHAS 140
Query: 148 DSPESAQREMSFFFQ 162
DS E AQRE+ +FQ
Sbjct: 141 DSVEGAQREIQLWFQ 155
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|B Chain B, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|C Chain C, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
Length = 152
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + ++ ED K Y + R FF+ L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGL 64
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N +HG D
Sbjct: 65 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGGD 121
Query: 149 SPESAQREMSFFFQ 162
S ESA++E+ +F
Sbjct: 122 SVESAEKEIGLWFH 135
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|B Chain B, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|C Chain C, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|D Chain D, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|E Chain E, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|F Chain F, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
Length = 151
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + +R E+ K Y + R FF L
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + ++G T+ +K P +IR + +N +HGSD
Sbjct: 64 VKYMNSGPVVAMVWEGLNVVKTGAVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 120
Query: 149 SPESAQREMSFFFQ 162
S +SA++E+S +F+
Sbjct: 121 SVKSAEKEISLWFK 134
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Giardia Lamblia Featuring A Disordered Dinucleotide
Binding Site
Length = 155
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRS 83
GS+ +E+T M+KPDG+ EI GF ++ + ++ + Y EH++R
Sbjct: 3 GSMARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARP 62
Query: 84 FFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNC 143
FF+ L K+++SGPV AMV E N ++ R ++G T K S P +IR G+D +N
Sbjct: 63 FFAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVT---KPAESAPGTIRGDFGIDVGRNI 119
Query: 144 VHGSDSPESAQREMSFFFQ 162
+HGS + + A RE++ +F+
Sbjct: 120 IHGSANLDDAAREIALWFK 138
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
pdb|3B54|B Chain B, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
Length = 161
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSF 84
S + E+T +KPDG+ +I + G+ ++ ++V+ D+ + YAEH + F
Sbjct: 10 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPF 69
Query: 85 FSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCV 144
F ++ +M SGP+LA V E ++ + R ++G T+ S P +IR G+D +N
Sbjct: 70 FPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLG---SAPGTIRGDFGIDLGRNVC 126
Query: 145 HGSDSPESAQREMSFFFQE 163
HGSDS +SA+RE++ +F++
Sbjct: 127 HGSDSVDSAEREINLWFKK 145
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization
Length = 182
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E E+T IKPDG+ EI GF ++ +V+ + A+ Y + R FF+
Sbjct: 31 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFN 90
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHG 146
L +++SGPV+AMV E E IT R LIG TD +K S P +IR + +N +HG
Sbjct: 91 GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQK---SAPGTIRGDLAVVVGRNIIHG 147
Query: 147 SDSPESAQREMSFFFQ 162
SD PE+A+ E+ +F+
Sbjct: 148 SDGPETAKDEIKLWFK 163
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSF 84
+ KE+T M+KPDG+ +I + + GF ++ + ++ + YA+ S+R F
Sbjct: 2 AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPF 61
Query: 85 FSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCV 144
F L+ YM SGPV+ MV E N + R ++G T+ S P +IR + +N +
Sbjct: 62 FPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPAD---SLPGTIRGDFCIQVGRNII 118
Query: 145 HGSDSPESAQREMSFFFQE 163
HGSD+ ESA++E++ +F E
Sbjct: 119 HGSDAVESAEKEIALWFNE 137
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|B Chain B, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|C Chain C, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
Length = 152
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + ++ ED K Y + R +F+ L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPWFAGL 64
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N + GSD
Sbjct: 65 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIGGSD 121
Query: 149 SPESAQREMSFFFQ 162
S ESA++E+ +F
Sbjct: 122 SVESAEKEIGLWFH 135
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Bacillus Halodenitrificans
Length = 150
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Query: 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87
KE+T M+KPDG+ N E+ K G + +++ + +DGA YAE FF
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
L+ TSGPV AMV E NA R ++G T+ A P +IR G+ + +N +HGS
Sbjct: 62 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAA---PGTIRGDFGVSAGRNAIHGS 118
Query: 148 DSPESAQREMSFFF 161
DS SA +E+ FF
Sbjct: 119 DSAGSAAKEIGAFF 132
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 153
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSF 84
+ KE+T M+KPDG+ +I + + GF ++ + ++ + YA+ S+R F
Sbjct: 2 AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPF 61
Query: 85 FSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCV 144
F L+ YM SGPV+ MV E N + R ++G T+ S P +IR + +N +
Sbjct: 62 FPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPAD---SLPGTIRGDFCIQVGRNII 118
Query: 145 HGSDSPESAQREMSFFFQE 163
GSD+ ESA++E++ +F E
Sbjct: 119 XGSDAVESAEKEIALWFNE 137
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|G Chain G, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|H Chain H, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|I Chain I, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|J Chain J, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|K Chain K, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|L Chain L, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
Length = 150
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E++ MIKPDG+ +I + GF + + + ++ A+ YA+ S + FF L
Sbjct: 3 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
++Y+ SGPV+AMV E ++ + R +IG T +A P +IRA ++ +N +HGSD
Sbjct: 63 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA---PGTIRADYAVEVGRNVIHGSD 119
Query: 149 SPESAQREMSFFFQE 163
S ++ ++E++ +F E
Sbjct: 120 SVDNGKKEIALWFPE 134
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|B Chain B, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|C Chain C, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|D Chain D, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|E Chain E, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|F Chain F, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
Length = 157
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T +KPDG+ EI + + G+ ++ ++++ + A+ Y + +S+ F+ L
Sbjct: 10 ERTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALKMLQPSAEQAQQHYIDLASKPFYKDL 69
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ Y +SGP++ MV E + + R L+G T+ S P +IR +D +N HGSD
Sbjct: 70 VAYFSSGPIVGMVWEGKGVVKGGRVLLGATNPAD---SLPGTIRGDFAVDVGRNVCHGSD 126
Query: 149 SPESAQREMSFFFQEMSSDEVTRH 172
S +SA+RE++F+F+ T H
Sbjct: 127 SVDSAKREIAFWFKPEELVNWTSH 150
>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|B Chain B, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|C Chain C, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|D Chain D, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|E Chain E, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|F Chain F, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
Length = 157
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
EK+ MIKPDG+ I K + G+ ++ +++ E+ K Y E S + FF +L
Sbjct: 10 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 69
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ Y++ GPV+AMV E + + R LIG T+ S+ +IR L+ KN +HGSD
Sbjct: 70 VAYISKGPVVAMVWEGVDMVKQGRKLIGETN---PLTSNTGTIRGDFCLEVSKNVIHGSD 126
Query: 149 SPESAQREMSFFFQEMSSDEVTR 171
S SA +E++ +F+ ++E+T+
Sbjct: 127 SVASANKEINIWFK---AEELTQ 146
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
pdb|3MPD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
Length = 151
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPD + I + E G + + V + +T Y+ SS FFS +
Sbjct: 6 ERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEM 65
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
++ M SG VLAMV ++A++ R LIG T+ + A + +IR G+ + KN +HGSD
Sbjct: 66 VEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVG---TIRGDYGVSTGKNIIHGSD 122
Query: 149 SPESAQREMSFFF 161
E+A++E+ +
Sbjct: 123 CVENAEKEIKLWI 135
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVV-RLDEDGAKTFYAEHSSRSFFSS 87
++TL +IKPD + EI I + F I+ + + + + Y EHS +S+F+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
L +M SGP++++V E +AI+ R L G T+ S P +IR D +N +H S
Sbjct: 67 LCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLA---SAPGTIRGDLANDIRENLIHAS 123
Query: 148 DSPESAQREMSFFFQE 163
DS +SA E+S +F E
Sbjct: 124 DSEDSAVDEISIWFPE 139
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVV-RLDEDGAKTFYAEHSSRSFFSS 87
++TL +IKPD + EI I + F I+ + + + + Y EHS +S+F+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
L +M SGP++++V E +AI+ R L G T+ S P +IR D +N +H S
Sbjct: 67 LCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLA---SAPGTIRGDLANDIGENLIHAS 123
Query: 148 DSPESAQREMSFFFQE 163
DS +SA E+S +F E
Sbjct: 124 DSEDSAVDEISIWFPE 139
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVV-RLDEDGAKTFYAEHSSRSFFSS 87
++TL +IKPD + EI I + F I+ + + + + Y EHS +S+F+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
L +M SGP++++V E +AI+ R L G I P +IR D +N +H S
Sbjct: 67 LCDFMVSGPIISIVYEGTDAISKIRRLQG-------NILTPGTIRGDLANDIRENLIHAS 119
Query: 148 DSPESAQREMSFFFQE 163
DS +SA E+S +F E
Sbjct: 120 DSEDSAVDEISIWFPE 135
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVV-RLDEDGAKTFYAEHSSRSFFSS 87
++TL +IKPD + EI I + F I+ + + + + Y EHS +S+F+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
+M SGP++++V E +AI+ R L G T+ S P +IR D +N +H S
Sbjct: 67 NCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLA---SAPGTIRGDLANDIRENLIHAS 123
Query: 148 DSPESAQREMSFFFQE 163
DS +SA E+S +F E
Sbjct: 124 DSEDSAVDEISIWFPE 139
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBB|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBC|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
Length = 142
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVV-RLDEDGAKTFYAEHSSRSFFSS 87
++TL +IKPD + EI I + F I+ + + + + Y EHS +S+F+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
L +M SGP++++V E +AI+ R L G I P +IR D +N +H S
Sbjct: 67 LCDFMVSGPIISIVYEGTDAISKIRRLQG-------NILTPGTIRGDLANDIGENLIHAS 119
Query: 148 DSPESAQREMSFFFQE 163
DS +SA E+S +F E
Sbjct: 120 DSEDSAVDEISIWFPE 135
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
pdb|3EMT|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
Length = 146
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVV-RLDEDGAKTFYAEHSSRSFFSS 87
++TL +IKPD + EI I + F I+ + + + + Y EHS +S+F+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
+M SGP++++V E +AI+ R L G T+ S P +IR D +N +H S
Sbjct: 67 NCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLA---SAPGTIRGDLANDIGENLIHAS 123
Query: 148 DSPESAQREMSFFFQE 163
DS +SA E+S +F E
Sbjct: 124 DSEDSAVDEISIWFPE 139
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
Length = 142
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVV-RLDEDGAKTFYAEHSSRSFFSS 87
++TL +IKPD + EI I + F I+ + + + + Y EHS +S+F+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
+M SGP++++V E +AI+ R L G I P +IR D +N +H S
Sbjct: 67 NCDFMVSGPIISIVYEGTDAISKIRRLQG-------NILTPGTIRGDLANDIRENLIHAS 119
Query: 148 DSPESAQREMSFFFQE 163
DS +SA E+S +F E
Sbjct: 120 DSEDSAVDEISIWFPE 135
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVV-RLDEDGAKTFYAEHSSRSFFSS 87
++TL +IKPD + EI I + F I+ + + + + Y EHS +S+F+
Sbjct: 22 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 81
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
+M SGP++++V E +AI+ R L G I P +IR D +N +H S
Sbjct: 82 NCDFMVSGPIISIVYEGTDAISKIRRLQG-------NILTPGTIRGDLANDIRENLIHAS 134
Query: 148 DSPESAQREMSFFFQE 163
DS +SA E+S +F E
Sbjct: 135 DSEDSAVDEISIWFPE 150
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
Length = 156
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T M+KPDG+ EI K G ++ + D Y EH + FF L
Sbjct: 10 ERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDL 69
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++ GPV M+ E AI R L+G T + S +IR G+ N VH S
Sbjct: 70 CDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVE---SAAGTIRGDFGVVKNFNIVHASS 126
Query: 149 SPESAQREMSFFF 161
S E A RE + +F
Sbjct: 127 SAEDAARECALWF 139
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|B Chain B, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|C Chain C, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|D Chain D, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|E Chain E, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|F Chain F, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
Length = 142
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVV-RLDEDGAKTFYAEHSSRSFFSS 87
++TL +IKPD + EI I + F I+ + + + + Y EHS +S+F+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
+M SGP++++V E +AI+ R L G I P +IR D +N +H S
Sbjct: 67 NCDFMVSGPIISIVYEGTDAISKIRRLQG-------NILTPGTIRGDLANDIGENLIHAS 119
Query: 148 DSPESAQREMSFFFQE 163
DS +SA E+S +F E
Sbjct: 120 DSEDSAVDEISIWFPE 135
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|B Chain B, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|C Chain C, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
Length = 195
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 50/180 (27%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS- 87
EKTL ++KPD ++ DEI ++G I+ + V+ + + FY SS + S
Sbjct: 16 EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKASPEEIERFYP--SSEEWLQSA 73
Query: 88 ----------------------------------LIKYMTSGPVLAMVLEKENAITDWRA 113
L+KY TSGP + VL+ A+ R
Sbjct: 74 GQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYXTSGPNVVXVLKGNRAVEIVRK 133
Query: 114 LIGPTDAKKAKISHPHSIRAMCGLDSEK----------NCVHGSDSPESAQREMSFFFQE 163
L+GPT A P +IR +DS N VH SDSP A+RE+ F+F+E
Sbjct: 134 LVGPTSPHSAP---PGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFRE 190
>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|B Chain B, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|C Chain C, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|D Chain D, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|E Chain E, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|F Chain F, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DZ6|A Chain A, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|B Chain B, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|C Chain C, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|D Chain D, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|E Chain E, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|F Chain F, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
Length = 190
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAE-----HSSRS 83
+KTL ++KPDG+ ++ G ++ +++ +DE AK Y S +
Sbjct: 27 QKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEA 86
Query: 84 FFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEK-- 141
++SLIK++++ PV V+E +I R L G T+ K++ P +IR S K
Sbjct: 87 VWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATE---PKLAIPGTIRGDFSYHSFKYS 143
Query: 142 --------NCVHGSDSPESAQREMSFFFQEMSSDEVTRHDE 174
N +H S + A RE+ +F++ R DE
Sbjct: 144 NEKGFSIYNVIHASANEADAMREIPIWFKDNEILNYKRDDE 184
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 31/123 (25%)
Query: 18 CRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIK------KVILESGFSIL-----RERVVR 66
C SNG V T +G+ G Y D+IK KV S ++I+ ++ ++
Sbjct: 161 CALFSNGEVYAWGTFRC--NEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILF 218
Query: 67 LDEDGAKTFYAEHSS------------------RSFFSSLIKYMTSGPVLAMVLEKENAI 108
LDE+G + R F +KY+ SG L K+N +
Sbjct: 219 LDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKL 278
Query: 109 TDW 111
W
Sbjct: 279 VSW 281
>pdb|3O59|X Chain X, Dna Polymerase D Large Subunit Dp2(1-300) From Pyrococcus
Horikoshii
Length = 300
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 17/102 (16%)
Query: 17 PCRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVV------RLDED 70
P S G VE +++ P G++ + I++++ E G I ++V + +
Sbjct: 45 PQASDXAGRVE-----SLVGPPGVA----ERIRELVKEYGKEIAALKIVDEIIDGKFGDL 95
Query: 71 GAKTFYAEHSSRSFFSSLIKYMTSGPV--LAMVLEKENAITD 110
G+K YAE + R+ + L + + S P+ +A V K N +D
Sbjct: 96 GSKEKYAEQAVRTALAILTEGVVSAPIEGIASVKIKRNTWSD 137
>pdb|2V8V|A Chain A, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|B Chain B, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|C Chain C, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|D Chain D, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
Length = 474
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 38 DGLSGNYTDEIKKVILESGFSILRERVVRLD 68
DGLS NY + +E+GF +L + ++ D
Sbjct: 416 DGLSHNYYEYSSPEEIENGFKVLLQAIINYD 446
>pdb|2V8D|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8D|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8H|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|C Chain C, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|D Chain D, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
Length = 474
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 38 DGLSGNYTDEIKKVILESGFSILRERVVRLD 68
DGLS NY + +E+GF +L + ++ D
Sbjct: 416 DGLSHNYYEYSSPEEIENGFKVLLQAIINYD 446
>pdb|2V8G|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2VL1|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
Length = 474
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 38 DGLSGNYTDEIKKVILESGFSILRERVVRLD 68
DGLS NY + +E+GF +L + ++ D
Sbjct: 416 DGLSHNYYEYSSPEEIENGFKVLLQAIINYD 446
>pdb|1R3N|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|E Chain E, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|F Chain F, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|G Chain G, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|H Chain H, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
Length = 462
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 38 DGLSGNYTDEIKKVILESGFSILRERVVRLD 68
DGLS NY + +E+GF +L + ++ D
Sbjct: 416 DGLSHNYYEYSSPEEIENGFKVLLQAIINYD 446
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,823,327
Number of Sequences: 62578
Number of extensions: 174154
Number of successful extensions: 532
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 75
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)