Query 030583
Match_columns 175
No_of_seqs 126 out of 1053
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 15:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02931 nucleoside diphosphat 100.0 1.3E-50 2.8E-55 318.4 17.4 170 6-175 7-177 (177)
2 PLN02619 nucleoside-diphosphat 100.0 7.4E-49 1.6E-53 318.6 13.9 157 5-164 65-221 (238)
3 PRK14542 nucleoside diphosphat 100.0 2.5E-48 5.5E-53 294.9 15.0 134 28-164 1-134 (137)
4 COG0105 Ndk Nucleoside diphosp 100.0 3.6E-48 7.7E-53 287.5 13.0 133 28-163 2-134 (135)
5 PRK14541 nucleoside diphosphat 100.0 1.2E-47 2.5E-52 292.3 15.1 135 28-165 1-135 (140)
6 cd04415 NDPk7A Nucleoside diph 100.0 2.3E-47 5E-52 287.8 14.4 131 29-161 1-131 (131)
7 PRK14545 nucleoside diphosphat 100.0 3.8E-47 8.3E-52 289.2 15.2 135 27-164 2-136 (139)
8 PTZ00093 nucleoside diphosphat 100.0 5.6E-47 1.2E-51 291.3 14.7 136 28-166 2-137 (149)
9 cd04418 NDPk5 Nucleoside dipho 100.0 6.6E-47 1.4E-51 285.7 14.7 132 29-162 1-132 (132)
10 PRK14540 nucleoside diphosphat 100.0 8.6E-47 1.9E-51 285.7 15.1 133 28-163 2-134 (134)
11 cd04414 NDPk6 Nucleoside dipho 100.0 1.3E-46 2.9E-51 285.0 15.1 134 29-162 1-135 (135)
12 cd04412 NDPk7B Nucleoside diph 100.0 1.7E-46 3.7E-51 284.1 15.0 133 29-161 1-134 (134)
13 PRK00668 ndk mulitfunctional n 100.0 2.8E-46 6.1E-51 282.9 14.4 133 28-163 1-133 (134)
14 cd00595 NDPk Nucleoside diphos 100.0 3.5E-46 7.5E-51 281.9 14.7 133 29-161 1-133 (133)
15 cd04416 NDPk_TX NDP kinase dom 100.0 5.9E-46 1.3E-50 280.4 13.9 132 29-161 1-132 (132)
16 PRK14543 nucleoside diphosphat 100.0 1.6E-45 3.4E-50 287.7 14.3 138 26-166 3-155 (169)
17 cd04413 NDPk_I Nucleoside diph 100.0 2.1E-45 4.5E-50 276.8 14.1 130 29-161 1-130 (130)
18 PF00334 NDK: Nucleoside dipho 100.0 4.2E-45 9.2E-50 276.2 12.5 133 29-164 1-133 (135)
19 smart00562 NDK These are enzym 100.0 5.7E-44 1.2E-48 270.1 15.2 133 29-164 1-133 (135)
20 KOG0888 Nucleoside diphosphate 100.0 7.6E-44 1.6E-48 273.6 8.4 144 28-171 5-148 (156)
21 PRK14544 nucleoside diphosphat 100.0 2.8E-42 6E-47 272.2 14.4 135 27-164 2-179 (183)
22 COG1799 Uncharacterized protei 67.6 15 0.00033 28.9 5.2 46 27-76 71-116 (167)
23 TIGR03738 PRTRC_C PRTRC system 52.6 6.9 0.00015 26.0 0.8 28 66-98 22-49 (66)
24 PF14454 Prok_Ub: Prokaryotic 50.7 12 0.00027 24.7 1.8 28 66-98 23-50 (65)
25 PF04472 DUF552: Protein of un 44.4 30 0.00065 22.9 3.0 43 32-78 1-43 (73)
26 PF13673 Acetyltransf_10: Acet 30.6 1.7E+02 0.0037 19.7 5.8 45 30-78 67-114 (117)
27 TIGR00640 acid_CoA_mut_C methy 27.3 2.2E+02 0.0048 21.0 5.6 39 32-72 7-45 (132)
28 COG3473 Maleate cis-trans isom 26.8 91 0.002 25.7 3.6 39 30-70 119-157 (238)
29 PF01408 GFO_IDH_MocA: Oxidore 24.8 1.3E+02 0.0029 20.7 3.9 47 29-79 63-109 (120)
30 PRK14744 leu operon leader pep 24.7 38 0.00082 18.4 0.7 13 2-14 4-16 (28)
31 COG1724 Predicted RNA binding 24.5 1.1E+02 0.0023 20.4 3.0 21 45-65 9-29 (66)
32 PRK09283 delta-aminolevulinic 24.4 79 0.0017 27.5 3.0 45 34-80 161-205 (323)
33 KOG2475 CDC45 (cell division c 24.4 3.8E+02 0.0083 25.1 7.4 102 32-153 29-135 (587)
34 cd06335 PBP1_ABC_ligand_bindin 24.0 4.1E+02 0.0089 22.1 7.4 74 30-115 139-214 (347)
35 cd00384 ALAD_PBGS Porphobilino 23.4 64 0.0014 27.9 2.3 45 34-80 153-197 (314)
36 KOG0328 Predicted ATP-dependen 22.3 4.2E+02 0.0091 23.2 6.9 73 43-115 151-244 (400)
37 KOG3219 Transcription initiati 21.5 95 0.0021 25.0 2.8 68 66-135 96-175 (195)
38 PF04339 DUF482: Protein of un 21.2 2E+02 0.0043 25.4 5.0 53 50-102 193-257 (370)
39 TIGR02990 ectoine_eutA ectoine 21.1 4.7E+02 0.01 21.4 8.2 36 30-67 121-156 (239)
40 PF15323 Ashwin: Developmental 20.9 86 0.0019 25.6 2.4 43 33-80 3-45 (214)
41 cd04903 ACT_LSD C-terminal ACT 20.7 2.1E+02 0.0045 17.2 4.3 32 32-65 2-33 (71)
42 PF06399 GFRP: GTP cyclohydrol 20.0 1.7E+02 0.0036 20.3 3.3 20 46-65 53-72 (83)
No 1
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=1.3e-50 Score=318.44 Aligned_cols=170 Identities=74% Similarity=1.146 Sum_probs=160.5
Q ss_pred hHHHHHHHhhcCcCCCCCCcccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcch
Q 030583 6 VGLFILACISSPCRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFF 85 (175)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~ 85 (175)
--+|.||-++|.-.+.+..++..|+|++|||||++.++++|+|+++|+++||.|+++||++||+++|++||.+|++++||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff 86 (177)
T PLN02931 7 QPLFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFF 86 (177)
T ss_pred HHHHHHHHcccccccCCCCCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccH
Confidence 35899999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCEEEEEEeeCChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCC
Q 030583 86 SSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMS 165 (175)
Q Consensus 86 ~~lv~~mtsGpvial~l~g~naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~ 165 (175)
++|+++|+|||+++|+|.|+|||++||+++||++|..|+...|+|||+.||.+.++|++||||++++|.+|+++||+...
T Consensus 87 ~~Lv~~mtSGP~vam~L~g~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~fF~~~~ 166 (177)
T PLN02931 87 PSLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGDVS 166 (177)
T ss_pred HHHHHHHHhCCeEEEEEecCCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chhhh-hccCC
Q 030583 166 SDEVT-RHDEL 175 (175)
Q Consensus 166 ~~~~~-~~~~~ 175 (175)
.+..- +|++|
T Consensus 167 ~~~~~~~~~~~ 177 (177)
T PLN02931 167 SGDVASQHDEL 177 (177)
T ss_pred ccccccccCcC
Confidence 66433 34654
No 2
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=7.4e-49 Score=318.59 Aligned_cols=157 Identities=33% Similarity=0.539 Sum_probs=152.1
Q ss_pred hhHHHHHHHhhcCcCCCCCCcccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcc
Q 030583 5 VVGLFILACISSPCRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSF 84 (175)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~ 84 (175)
..|.++||++.++.+........+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~a~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpF 144 (238)
T PLN02619 65 ISGALALPAAVYMLQEQEAHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPF 144 (238)
T ss_pred HHHhhcchhhhhhccccccccchhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCEEEEEEeeCChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 85 FSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 85 ~~~lv~~mtsGpvial~l~g~naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
|++|+++|+|||+++|+|+|+|+|++||+++||++|..+. |+|||+.||.+.++|+|||||++++|.+|+++||++.
T Consensus 145 f~~Lv~fMtSGPvvamvL~GenaV~~~R~LiGpTdP~~A~---PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF~~~ 221 (238)
T PLN02619 145 FNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSE---PGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPE 221 (238)
T ss_pred HHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCCccccC---CCcchhhhcccccceeeecCCCHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999764 9999999999999999999999999999999999853
No 3
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.5e-48 Score=294.90 Aligned_cols=134 Identities=43% Similarity=0.736 Sum_probs=130.6
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 48999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
|++||+++||++|..|. |+|||+.||.+.++|++||||++++|.+|+++||++.
T Consensus 81 v~~~R~l~Gpt~p~~A~---p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~ 134 (137)
T PRK14542 81 VLHWREVIGATDPKEAA---AGTIRALYAESKEANAVHGSDSDANAALEISFFFKGN 134 (137)
T ss_pred HHHHHHHhCCCCchhCC---CCCchHHhcCcccceeEECCCCHHHHHHHHHHcCChh
Confidence 99999999999999886 9999999999999999999999999999999999864
No 4
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.6e-48 Score=287.52 Aligned_cols=133 Identities=44% Similarity=0.725 Sum_probs=130.9
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+|+++++++||+|+++||+++++++|++||.+|+++|||++|++||+|||+++++|+|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQE 163 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~ 163 (175)
|+.+|+++|+|||..|. |+|||+.||.+...|.+|||||+++|+||+.+||++
T Consensus 82 i~~~R~l~GaTnp~~A~---pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~~F~~ 134 (135)
T COG0105 82 ISVVRKLMGATNPANAA---PGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK 134 (135)
T ss_pred HHHHHHHHCCCCcccCC---CCeEeeehhcccCcceEEccCCHHHHhHHhhhccCC
Confidence 99999999999999887 999999999999999999999999999999999975
No 5
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.2e-47 Score=292.31 Aligned_cols=135 Identities=39% Similarity=0.673 Sum_probs=131.1
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 47999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMS 165 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~ 165 (175)
|++||+++||++|..|. |+|||+.||.+.++|++||||++++|.+|+++||++..
T Consensus 81 v~~~R~l~Gpt~p~~A~---p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~fF~~~~ 135 (140)
T PRK14541 81 VADFRTLIGATDPAEAA---EGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSAEE 135 (140)
T ss_pred HHHHHHHhCCCCchhCC---CCCchHHhcccccceeEECCCCHHHHHHHHHHcCChhh
Confidence 99999999999999986 99999999999999999999999999999999998753
No 6
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=2.3e-47 Score=287.77 Aligned_cols=131 Identities=47% Similarity=0.868 Sum_probs=128.8
Q ss_pred eeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCChh
Q 030583 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~naV 108 (175)
|+||+|||||++.+ +|+|+++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|||
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 68999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcC
Q 030583 109 TDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFF 161 (175)
Q Consensus 109 ~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF 161 (175)
++||+++||++|..|+...|+|||+.||.+.++|++||||++++|.+|+++||
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~fF 131 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF 131 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999998
No 7
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=3.8e-47 Score=289.19 Aligned_cols=135 Identities=39% Similarity=0.652 Sum_probs=131.1
Q ss_pred cceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCC
Q 030583 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (175)
Q Consensus 27 ~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~n 106 (175)
..|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|
T Consensus 2 ~~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~n 81 (139)
T PRK14545 2 AGNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKEN 81 (139)
T ss_pred CcceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCC
Confidence 35899999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 107 AITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 107 aV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
||++||+++||++|+.|. |+|||+.||.+.++|++||||++++|.+|+++||++.
T Consensus 82 av~~~R~l~Gpt~p~~A~---p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~ 136 (139)
T PRK14545 82 AVEDFRTLIGATNPADAA---EGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHFAGR 136 (139)
T ss_pred HHHHHHHHhCCCCcccCC---CCChhHHhcccccceeEECCCCHHHHHHHHHHhCCcc
Confidence 999999999999999985 9999999999999999999999999999999999864
No 8
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=5.6e-47 Score=291.26 Aligned_cols=136 Identities=35% Similarity=0.639 Sum_probs=131.1
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|++.|+||
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 58999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
|++||+++||++|..+. |+|||+.||.+.++|+|||||++++|.+|+++||++...
T Consensus 82 v~~~R~l~Gpt~p~~a~---p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF~~~~~ 137 (149)
T PTZ00093 82 VKQGRKLLGATNPLESA---PGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEEL 137 (149)
T ss_pred HHHHHHHhCCCCccccC---CCcchhhhccccccceeecCCCHHHHHHHHHHhCChhhc
Confidence 99999999999999774 999999999999999999999999999999999986443
No 9
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=6.6e-47 Score=285.68 Aligned_cols=132 Identities=51% Similarity=0.904 Sum_probs=129.7
Q ss_pred eeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCChh
Q 030583 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~naV 108 (175)
|+|++|||||++.+ +|+||++|+++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 68999999999987 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCC
Q 030583 109 TDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQ 162 (175)
Q Consensus 109 ~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~ 162 (175)
++||+++||++|..|+...|+|||+.||.+.++|++||||++++|.+|+++|||
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF~ 132 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMFP 132 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999997
No 10
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=8.6e-47 Score=285.70 Aligned_cols=133 Identities=40% Similarity=0.694 Sum_probs=129.8
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 58999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQE 163 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~ 163 (175)
|++||+++||++|+.|. |+|||+.||.+.++|++||||++++|.+|+++||++
T Consensus 82 v~~~R~l~Gpt~p~~a~---p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~fF~~ 134 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAE---PGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE 134 (134)
T ss_pred HHHHHHHhCCCCcccCC---CCcchhhhcccccceeEECCCCHHHHHHHHHHhcCC
Confidence 99999999999999884 999999999999999999999999999999999984
No 11
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=1.3e-46 Score=285.00 Aligned_cols=134 Identities=46% Similarity=0.864 Sum_probs=129.4
Q ss_pred eeEEEEEcCCcccCCcH-HHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 29 EKTLAMIKPDGLSGNYT-DEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~-g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
|+||+|||||++.+++. |.|++.|+++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 68999999999998876 56777788999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQ 162 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~ 162 (175)
|++||+++||++|..|+...|+|||++||.+.++|++||||++++|.+|+++|||
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~ 135 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFFP 135 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999997
No 12
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1.7e-46 Score=284.09 Aligned_cols=133 Identities=33% Similarity=0.550 Sum_probs=131.0
Q ss_pred eeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCC-cchHHHHHHhccCCEEEEEEeeCCh
Q 030583 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSR-SFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~-~~~~~lv~~mtsGpvial~l~g~na 107 (175)
++||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|+++ +||++|+++|+|||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFF 161 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF 161 (175)
|++||+++||++|..|+...|+|||+.||.+.++|++||||++++|.+|+++||
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~fF 134 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF 134 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHhhC
Confidence 999999999999999998999999999999999999999999999999999998
No 13
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=2.8e-46 Score=282.85 Aligned_cols=133 Identities=44% Similarity=0.716 Sum_probs=129.1
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
.|+|++|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 47999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQE 163 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~ 163 (175)
|++||+++||++|..+ .|+|||+.||.+.++|++||||++++|.+|+++|||+
T Consensus 81 v~~~r~l~Gp~~p~~a---~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~fF~~ 133 (134)
T PRK00668 81 IAKVRELMGATNPAEA---APGTIRGDFALSIGENVVHGSDSPESAAREIALFFSE 133 (134)
T ss_pred HHHHHHHhCCCCcccc---CCCcchhhhccccccccEECCCCHHHHHHHHHHhCCC
Confidence 9999999999999866 4999999999999999999999999999999999985
No 14
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=3.5e-46 Score=281.87 Aligned_cols=133 Identities=48% Similarity=0.838 Sum_probs=131.0
Q ss_pred eeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCChh
Q 030583 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~naV 108 (175)
|+|++|||||++.++++|+|+++|+++||.|+++||++||+++|++||.+|.+++||++++++|+|||+++|+|.|+|||
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 68999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcC
Q 030583 109 TDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFF 161 (175)
Q Consensus 109 ~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF 161 (175)
++||+++||++|+.|+...|+|||++||.+.++|++||||++++|.+|+++||
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~~F 133 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFFF 133 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999998
No 15
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=5.9e-46 Score=280.38 Aligned_cols=132 Identities=48% Similarity=0.829 Sum_probs=129.5
Q ss_pred eeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCChh
Q 030583 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~naV 108 (175)
|+||+|||||++.+ ++|+|+++|+++||.|+++||++||+++|++||.+|.+++||++++++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 68999999999977 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcC
Q 030583 109 TDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFF 161 (175)
Q Consensus 109 ~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF 161 (175)
++||+++||++|..|+...|+|||+.||.+.++|++||||++++|.+|+++||
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF 132 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF 132 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998
No 16
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.6e-45 Score=287.70 Aligned_cols=138 Identities=28% Similarity=0.458 Sum_probs=130.8
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHH-----HhcCCcchHHHHHHhccCCEEEE
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYA-----EHSSRSFFSSLIKYMTSGPVLAM 100 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~-----~~~~~~~~~~lv~~mtsGpvial 100 (175)
...|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||. +|.+++||++|+++|+|||+++|
T Consensus 3 ~~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~val 82 (169)
T PRK14543 3 TLIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVF 82 (169)
T ss_pred CccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEE
Confidence 3578999999999999999999999999999999999999999999999995 78999999999999999999999
Q ss_pred EEeeCChhHHHHHHhCCCChhhhhhcCCCchhccccCC----------CCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 101 VLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLD----------SEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 101 ~l~g~naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~----------~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
+|.|+|||++||+++||++|..+. |+|||+.||.+ .++|+|||||++++|.||+++|||+...
T Consensus 83 vl~g~naI~~~R~l~Gpt~p~~a~---p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~fF~~~e~ 155 (169)
T PRK14543 83 VVEGVESVEVVRKFCGSTEPKLAI---PGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPIWFKDNEI 155 (169)
T ss_pred EEECCCHHHHHHHHhCCCCccccC---CCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCCcccc
Confidence 999999999999999999998775 99999999986 7899999999999999999999997543
No 17
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=2.1e-45 Score=276.81 Aligned_cols=130 Identities=45% Similarity=0.724 Sum_probs=127.0
Q ss_pred eeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCChh
Q 030583 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~naV 108 (175)
|+|++|||||++.++++|+||++|.++||.|+++||++|++++|++||.+|.+++||++++++|+|||+++|++.|+|||
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcC
Q 030583 109 TDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFF 161 (175)
Q Consensus 109 ~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF 161 (175)
++||+++||++|+.+ .|+|||+.||.+.++|++||||++++|.+|+++||
T Consensus 81 ~~~r~l~Gp~~~~~a---~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~fF 130 (130)
T cd04413 81 KTVRKLMGATNPADA---APGTIRGDFALSIGRNIVHGSDSVESAEREIALWF 130 (130)
T ss_pred HHHHHHhCCCCcccc---CCCCchhhhcccccccceECCCCHHHHHHHHHhhC
Confidence 999999999999976 49999999999999999999999999999999998
No 18
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=4.2e-45 Score=276.22 Aligned_cols=133 Identities=49% Similarity=0.870 Sum_probs=122.2
Q ss_pred eeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCChh
Q 030583 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~naV 108 (175)
|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||..+.++++|+.++++|+|||+++|+++|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 109 TDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 109 ~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
++||+++||+||+.| .|+|||++||.+..+|++||||++++|.||+.+|||+.
T Consensus 81 ~~~r~l~Gp~dp~~a---~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~~F~~~ 133 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEA---APGSLRARYGTDIIRNAVHGSDSPEDAEREIAFFFPEF 133 (135)
T ss_dssp HHHHHHH--SSGGGS---STTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHHHSTGG
T ss_pred HHHHHhcCCcchhhh---ccccchhceeecCCCCeEECCCCHHHHHHHHHHcCCcc
Confidence 999999999999999 59999999999999999999999999999999999864
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=5.7e-44 Score=270.13 Aligned_cols=133 Identities=50% Similarity=0.874 Sum_probs=128.5
Q ss_pred eeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCChh
Q 030583 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~naV 108 (175)
|+|++|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.++++|++++++|++||+++|+|.|+|||
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 109 TDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 109 ~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
++||+++||++|..+ .|+|||++||.+.++|++||||++++|.+|+++|||+.
T Consensus 81 ~~~r~l~Gp~~~~~~---~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~~F~~~ 133 (135)
T smart00562 81 KTWRTLMGPTDPREA---APGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPES 133 (135)
T ss_pred HHHHHHhCCCChhhc---CCcchHHhhcccccceeEECCCCHHHHHHHHHHcCCcc
Confidence 999999999998655 49999999999999999999999999999999999875
No 20
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.6e-44 Score=273.57 Aligned_cols=144 Identities=41% Similarity=0.716 Sum_probs=138.1
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
.|+||++||||++.+|++++||.+++++||+|++.|+++++++.+++||.++++++||+.|+.||+|||++||+++|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCchhhhh
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSSDEVTR 171 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~~~~~~ 171 (175)
|+.||+++||++|..|+...|+|||+.||.+..+|++||||+.++|+|||.+||++.....+.+
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~~F~~~e~~~~~~ 148 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKLWFPEFELVVYES 148 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHHHhcCchhhheeccc
Confidence 9999999999999999999999999999999999999999999999999999999865544333
No 21
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.8e-42 Score=272.20 Aligned_cols=135 Identities=39% Similarity=0.642 Sum_probs=127.6
Q ss_pred cceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHh---------------------------
Q 030583 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH--------------------------- 79 (175)
Q Consensus 27 ~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~--------------------------- 79 (175)
..|+||+|||||++.++++|+||++|++.||.|+++||+++|+++|++||..+
T Consensus 2 ~~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (183)
T PRK14544 2 PIERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLG 81 (183)
T ss_pred CcceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccc
Confidence 36899999999999988999999999999999999999999999999999854
Q ss_pred ------cCCcchHHHHHHhccCCEEEEEEeeCChhHHHHHHhCCCChhhhhhcCCCchhccccCCC----------Ccce
Q 030583 80 ------SSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDS----------EKNC 143 (175)
Q Consensus 80 ------~~~~~~~~lv~~mtsGpvial~l~g~naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~----------~~N~ 143 (175)
.+++||++|+++|+|||+++|++.|+|||++||+++||++|..|. |+|||+.||.+. ++|+
T Consensus 82 ~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~---P~TIR~~fg~~~~~~~~~~~~~~~Na 158 (183)
T PRK14544 82 TDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAP---PGTIRGDYSIDSPDLAAEEGRVVYNL 158 (183)
T ss_pred cccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccC---CCCchhhhcccccccccccccceeeE
Confidence 678999999999999999999999999999999999999998874 999999999873 7999
Q ss_pred eEcCCCHHHHHHHHHhcCCCC
Q 030583 144 VHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 144 vH~Sds~~~a~rEi~~fF~~~ 164 (175)
+||||++++|.+|+++||++.
T Consensus 159 vH~Sds~e~A~rEi~~fF~~~ 179 (183)
T PRK14544 159 VHASDSPEEAEREIKFWFREE 179 (183)
T ss_pred EECCCCHHHHHHHHHHhCChh
Confidence 999999999999999999864
No 22
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.61 E-value=15 Score=28.86 Aligned_cols=46 Identities=11% Similarity=0.272 Sum_probs=38.3
Q ss_pred cceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHH
Q 030583 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFY 76 (175)
Q Consensus 27 ~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y 76 (175)
....++++++|..+.. +.+|.+.|.+....+++++. |++++|++..
T Consensus 71 ~~~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvinl~~--m~~~qArRiv 116 (167)
T COG1799 71 QDSSKIVLLEPRKYED--AQEIADYLKNRKAVVINLQR--MDPAQARRIV 116 (167)
T ss_pred CCceEEEEecCccHHH--HHHHHHHHhcCceEEEEeee--CCHHHHHHHH
Confidence 5578999999999987 77999999988888877765 4788888775
No 23
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=52.57 E-value=6.9 Score=26.04 Aligned_cols=28 Identities=21% Similarity=0.625 Sum_probs=22.3
Q ss_pred eeCHHHHHHHHHHhcCCcchHHHHHHhccCCEE
Q 030583 66 RLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVL 98 (175)
Q Consensus 66 ~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvi 98 (175)
.++++++++||+.. |++|...--+||.+
T Consensus 22 ~~spe~V~dfYs~~-----YPeLttA~v~gP~~ 49 (66)
T TIGR03738 22 AMSPEQVRDFYSAQ-----YPELLNAEVEGPVV 49 (66)
T ss_pred CCCHHHHHHHHhcc-----CchheeeeeeCCeE
Confidence 57899999999774 88887766678865
No 24
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=50.69 E-value=12 Score=24.73 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=22.9
Q ss_pred eeCHHHHHHHHHHhcCCcchHHHHHHhccCCEE
Q 030583 66 RLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVL 98 (175)
Q Consensus 66 ~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvi 98 (175)
.++++++++||+.. |+.|...--.||.+
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE
Confidence 57899999999775 88888777778865
No 25
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=44.42 E-value=30 Score=22.88 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=28.0
Q ss_pred EEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHH
Q 030583 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAE 78 (175)
Q Consensus 32 l~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~ 78 (175)
+++++|..+.. +.+|.+.|.+....|.++. .|+.++++++...
T Consensus 1 I~v~~p~~~~D--~~~i~~~l~~g~~Vivnl~--~l~~~~~~Ri~Df 43 (73)
T PF04472_consen 1 IVVFEPKSFED--AREIVDALREGKIVIVNLE--NLDDEEAQRILDF 43 (73)
T ss_dssp -EEEE-SSGGG--HHHHHHHHHTT--EEEE-T--TS-HHHHHHHHHH
T ss_pred CEEEeeCCHHH--HHHHHHHHHcCCEEEEECC--CCCHHHHHHHHHH
Confidence 36889999976 7899999998877666664 4567777776533
No 26
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=30.58 E-value=1.7e+02 Score=19.66 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=29.9
Q ss_pred eEEEEEcCCcccCCcHHHHHHHHHHc---CCeEEEEEEeeeCHHHHHHHHHH
Q 030583 30 KTLAMIKPDGLSGNYTDEIKKVILES---GFSILRERVVRLDEDGAKTFYAE 78 (175)
Q Consensus 30 ~tl~lIKPda~~~~~~g~Ii~~l~~~---Gf~I~~~k~~~lt~~~a~~~y~~ 78 (175)
-..+.|.|+.-.+|....+++.+.+. |+....+. +...+..||..
T Consensus 67 i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~~~~~l~~~----~~~~a~~~y~~ 114 (117)
T PF13673_consen 67 ISHLYVLPEYRGRGIGRALLDAAEKEAKDGIRRLTVE----ANERARRFYRK 114 (117)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHTTTCEEEEEE----C-HHHHHHHHH
T ss_pred EEEEEEChhhcCCcHHHHHHHHHHHHHHcCCcEEEEE----eCHHHHHHHHh
Confidence 66688999987777544555555443 88777666 67778888865
No 27
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.26 E-value=2.2e+02 Score=21.03 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=25.4
Q ss_pred EEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHH
Q 030583 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGA 72 (175)
Q Consensus 32 l~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a 72 (175)
++-+++|....| ..-+-..|+..||+++...... +++++
T Consensus 7 ~a~~g~D~Hd~g-~~iv~~~l~~~GfeVi~lg~~~-s~e~~ 45 (132)
T TIGR00640 7 VAKMGQDGHDRG-AKVIATAYADLGFDVDVGPLFQ-TPEEI 45 (132)
T ss_pred EEeeCCCccHHH-HHHHHHHHHhCCcEEEECCCCC-CHHHH
Confidence 455667765543 2234456688999999998875 55544
No 28
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.76 E-value=91 Score=25.70 Aligned_cols=39 Identities=10% Similarity=0.219 Sum_probs=31.5
Q ss_pred eEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHH
Q 030583 30 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDED 70 (175)
Q Consensus 30 ~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~ 70 (175)
+.+.++.|-...- -...++.|+.+||.|+..+-+-++.+
T Consensus 119 ~ri~vlTPY~~ev--n~~e~ef~~~~Gfeiv~~~~Lgi~dn 157 (238)
T COG3473 119 QRISVLTPYIDEV--NQREIEFLEANGFEIVDFKGLGITDN 157 (238)
T ss_pred ceEEEeccchhhh--hhHHHHHHHhCCeEEEEeeccCCccc
Confidence 5688899976543 46788999999999999998877765
No 29
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.80 E-value=1.3e+02 Score=20.70 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=38.0
Q ss_pred eeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHh
Q 030583 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH 79 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~ 79 (175)
-..+++..|+.. ..+++....+.|..|.--|-+.++.+++++++...
T Consensus 63 ~D~V~I~tp~~~----h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 63 VDAVIIATPPSS----HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp ESEEEEESSGGG----HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEecCCcc----hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHH
Confidence 345667777754 24788888999999999999999999999998654
No 30
>PRK14744 leu operon leader peptide; Provisional
Probab=24.71 E-value=38 Score=18.43 Aligned_cols=13 Identities=38% Similarity=0.800 Sum_probs=10.4
Q ss_pred chhhhHHHHHHHh
Q 030583 2 ILRVVGLFILACI 14 (175)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (175)
|.|.+||+.|-+.
T Consensus 4 i~Rf~glLLLNA~ 16 (28)
T PRK14744 4 IVRFTGLLLLNAF 16 (28)
T ss_pred eeeehhHHHhhhH
Confidence 6789999988664
No 31
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=24.49 E-value=1.1e+02 Score=20.40 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCeEEEEEEe
Q 030583 45 TDEIKKVILESGFSILRERVV 65 (175)
Q Consensus 45 ~g~Ii~~l~~~Gf~I~~~k~~ 65 (175)
..++|+.|++.||..++.|--
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkGS 29 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKGS 29 (66)
T ss_pred HHHHHHHHHhCCcEEEEeecc
Confidence 468999999999999998753
No 32
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=24.42 E-value=79 Score=27.47 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=37.9
Q ss_pred EEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhc
Q 030583 34 MIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80 (175)
Q Consensus 34 lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~ 80 (175)
+|-|..+-.|+++.|-+.|.++||. ++..+.-+-..+..||...+
T Consensus 161 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFR 205 (323)
T PRK09283 161 IVAPSDMMDGRVGAIREALDEAGFT--DVPIMSYSAKYASAFYGPFR 205 (323)
T ss_pred EEEcccccccHHHHHHHHHHHCCCC--CCceeecHHHHHHhhhHHHH
Confidence 5778877789999999999999994 57777888889999997754
No 33
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=24.36 E-value=3.8e+02 Score=25.09 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=67.6
Q ss_pred EEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCChhHHH
Q 030583 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDW 111 (175)
Q Consensus 32 l~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~naV~~~ 111 (175)
|+=+-+||++. -+|++.|.+..+.--.+.-+. .-.+.++.|.+++ +++.-++|.+-.+...+
T Consensus 29 fVs~DiDALCA---~kiLt~Llk~D~iqysivPVs-G~~elek~~~e~~--------------e~~~~iiLiNcG~~vDL 90 (587)
T KOG2475|consen 29 FVSLDIDALCA---TKILTHLLKCDHIQYSIVPVS-GWSELEKAFLELQ--------------EQIKYIILINCGATVDL 90 (587)
T ss_pred EEecChhHHHH---HHHHHHHHhccccceeEEEec-chHHHHHHHHhhc--------------cCceEEEEecCCcchhH
Confidence 33367888874 699999998876555554442 5567888888875 45777888888888888
Q ss_pred HHHhCCCChhhhh-----hcCCCchhccccCCCCcceeEcCCCHHHH
Q 030583 112 RALIGPTDAKKAK-----ISHPHSIRAMCGLDSEKNCVHGSDSPESA 153 (175)
Q Consensus 112 r~l~Gp~~p~~a~-----~~~p~slR~~fG~~~~~N~vH~Sds~~~a 153 (175)
..++-| |.... .-.|-.|-..|+.+.+.=..|++++.+-.
T Consensus 91 ~~~L~~--P~e~~~fViDSHRP~nl~Niy~~~qi~~l~d~d~ee~i~ 135 (587)
T KOG2475|consen 91 TRLLQP--PSEDVIFVIDSHRPFNLENIYEDNQIHLLDDGDDEEQIP 135 (587)
T ss_pred HHHhCC--cccceEEEEeCCCCcchhhcccCceEEEecCCChhhhcc
Confidence 888875 33321 12477777788766554455565444333
No 34
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.00 E-value=4.1e+02 Score=22.09 Aligned_cols=74 Identities=8% Similarity=0.169 Sum_probs=42.1
Q ss_pred eEEEEEcCCc-ccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCC-EEEEEEeeCCh
Q 030583 30 KTLAMIKPDG-LSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGP-VLAMVLEKENA 107 (175)
Q Consensus 30 ~tl~lIKPda-~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGp-vial~l~g~na 107 (175)
+.++++-+|. +-+.....+.+.+.+.|.+++....+..+..+ |-+.+.....+|| ++.+...+.++
T Consensus 139 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d------------~s~~i~~i~~~~~d~v~~~~~~~~~ 206 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKD------------MTAQLLRAKAAGADAIIIVGNGPEG 206 (347)
T ss_pred CeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCcc------------HHHHHHHHHhCCCCEEEEEecChHH
Confidence 5666666654 33334566777788888888776655433222 2222334455677 44444456677
Q ss_pred hHHHHHHh
Q 030583 108 ITDWRALI 115 (175)
Q Consensus 108 V~~~r~l~ 115 (175)
+.-++++-
T Consensus 207 ~~~~~~~~ 214 (347)
T cd06335 207 AQIANGMA 214 (347)
T ss_pred HHHHHHHH
Confidence 76666543
No 35
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=23.35 E-value=64 Score=27.88 Aligned_cols=45 Identities=18% Similarity=0.388 Sum_probs=37.2
Q ss_pred EEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhc
Q 030583 34 MIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80 (175)
Q Consensus 34 lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~ 80 (175)
+|-|..+-.|+++.|-+.|.++|| .++-.+.-+-..+..||...+
T Consensus 153 iVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImsYsaKyaSafYGPFR 197 (314)
T cd00384 153 IVAPSDMMDGRVAAIREALDEAGF--SDVPIMSYSAKYASAFYGPFR 197 (314)
T ss_pred eeecccccccHHHHHHHHHHHCCC--CCCceeecHHHhhhhccchHH
Confidence 577888778999999999999999 556677778888899987654
No 36
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=22.29 E-value=4.2e+02 Score=23.18 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEEeeeCHHHH-------HHHHHHhcCCc----------chHH----HHHHhccCCEEEEE
Q 030583 43 NYTDEIKKVILESGFSILRERVVRLDEDGA-------KTFYAEHSSRS----------FFSS----LIKYMTSGPVLAMV 101 (175)
Q Consensus 43 ~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a-------~~~y~~~~~~~----------~~~~----lv~~mtsGpvial~ 101 (175)
|--|.|+++|....++-.++||+.|++.+- ++.|.-++.-| .++. +.+.+...|+-.++
T Consensus 151 GtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilv 230 (400)
T KOG0328|consen 151 GTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILV 230 (400)
T ss_pred CCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEE
Confidence 446899999999999999999999998762 44454443211 1222 33444456877666
Q ss_pred EeeCChhHHHHHHh
Q 030583 102 LEKENAITDWRALI 115 (175)
Q Consensus 102 l~g~naV~~~r~l~ 115 (175)
=..+-..+-.+++.
T Consensus 231 krdeltlEgIKqf~ 244 (400)
T KOG0328|consen 231 KRDELTLEGIKQFF 244 (400)
T ss_pred ecCCCchhhhhhhe
Confidence 55444444444443
No 37
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=21.53 E-value=95 Score=25.01 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=35.2
Q ss_pred eeCHHHHHHHHHHhcC---CcchHHHHHHhccC---CEEEEEEeeC------ChhHHHHHHhCCCChhhhhhcCCCchhc
Q 030583 66 RLDEDGAKTFYAEHSS---RSFFSSLIKYMTSG---PVLAMVLEKE------NAITDWRALIGPTDAKKAKISHPHSIRA 133 (175)
Q Consensus 66 ~lt~~~a~~~y~~~~~---~~~~~~lv~~mtsG---pvial~l~g~------naV~~~r~l~Gp~~p~~a~~~~p~slR~ 133 (175)
.||+++..++-..++. |+....|+..++++ +.+++.+.|- ..|+..+.+++-..- ..-..|..||.
T Consensus 96 ~fseEQl~RYEvfRrs~f~Ka~iKkL~~~itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e--~~PLqP~HIRE 173 (195)
T KOG3219|consen 96 NFSEEQLSRYEVFRRSAFPKAQIKKLMSSITGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGE--SGPLQPKHIRE 173 (195)
T ss_pred hcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 3455555554333321 23345677777765 5677777773 245555444432210 11134788887
Q ss_pred cc
Q 030583 134 MC 135 (175)
Q Consensus 134 ~f 135 (175)
.|
T Consensus 174 A~ 175 (195)
T KOG3219|consen 174 AY 175 (195)
T ss_pred HH
Confidence 65
No 38
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=21.19 E-value=2e+02 Score=25.39 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=37.3
Q ss_pred HHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcC------------CcchHHHHHHhccCCEEEEEE
Q 030583 50 KVILESGFSILRERVVRLDEDGAKTFYAEHSS------------RSFFSSLIKYMTSGPVLAMVL 102 (175)
Q Consensus 50 ~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~------------~~~~~~lv~~mtsGpvial~l 102 (175)
+++.+.|++|....--.+++++...||.-+.. +.||..+.+.|...-++++.-
T Consensus 193 r~v~~~Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~ 257 (370)
T PF04339_consen 193 RKVAEQGIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVAR 257 (370)
T ss_pred HHHHHcCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEE
Confidence 45567899999998888999887777654332 357888888777654444443
No 39
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=21.10 E-value=4.7e+02 Score=21.41 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=27.1
Q ss_pred eEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeee
Q 030583 30 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRL 67 (175)
Q Consensus 30 ~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~l 67 (175)
+-++|+.|-.- .....+.+.++++||+++..+-+.+
T Consensus 121 ~RIalvTPY~~--~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 121 RRISLLTPYTP--ETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred CEEEEECCCcH--HHHHHHHHHHHhCCcEEeeeeccCC
Confidence 67899999543 3356788999999999999854433
No 40
>PF15323 Ashwin: Developmental protein
Probab=20.89 E-value=86 Score=25.63 Aligned_cols=43 Identities=19% Similarity=0.392 Sum_probs=34.9
Q ss_pred EEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhc
Q 030583 33 AMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80 (175)
Q Consensus 33 ~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~ 80 (175)
.++-|+.+.. ..++..|.+.++.+.+ ...++.++..++|..|.
T Consensus 3 ~LlhPElLS~---~~Ll~iL~~r~I~~~~--~~~~~kd~L~~Ly~q~~ 45 (214)
T PF15323_consen 3 LLLHPELLSR---EFLLLILRQRNIDVEN--DEKLDKDELTELYVQHA 45 (214)
T ss_pred cccChhhcCH---HHHHHHHHHcCcCccc--hhhcCHHHHHHHHHHHh
Confidence 5688998875 6788889999999888 56778999999997653
No 41
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.74 E-value=2.1e+02 Score=17.22 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=23.5
Q ss_pred EEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEe
Q 030583 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVV 65 (175)
Q Consensus 32 l~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~ 65 (175)
+.+.-+|.- |...+|.+.|.++|..|..+...
T Consensus 2 l~i~~~d~~--g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 2 LIVVHKDKP--GAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred EEEEeCCCC--ChHHHHHHHHHHcCcCeeeeEEE
Confidence 444555543 55789999999999999887653
No 42
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=20.03 E-value=1.7e+02 Score=20.31 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCeEEEEEEe
Q 030583 46 DEIKKVILESGFSILRERVV 65 (175)
Q Consensus 46 g~Ii~~l~~~Gf~I~~~k~~ 65 (175)
..|+++|+..||+++.+.-+
T Consensus 53 r~VLnKLE~~G~kVvsmtgv 72 (83)
T PF06399_consen 53 RVVLNKLEKMGYKVVSMTGV 72 (83)
T ss_dssp HHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHhcCeEEEEEecc
Confidence 57999999999999998654
Done!