Query 030583
Match_columns 175
No_of_seqs 126 out of 1053
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 02:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hr2_A Nucleoside diphosphate 100.0 7.3E-52 2.5E-56 315.4 13.3 139 24-165 3-141 (145)
2 3ztp_A Nucleoside diphosphate 100.0 4.1E-51 1.4E-55 310.8 13.4 137 28-164 3-139 (142)
3 3fkb_A NDP kinase, NDK, nucleo 100.0 2.3E-50 8E-55 310.3 13.2 140 24-166 4-143 (155)
4 3mpd_A Nucleoside diphosphate 100.0 1.7E-50 5.9E-55 310.0 12.1 136 26-164 3-139 (151)
5 3evo_A NDP kinase, NDK, nucleo 100.0 3.6E-50 1.2E-54 306.6 13.6 138 26-166 4-142 (146)
6 3q8u_A Nucleoside diphosphate 100.0 6.9E-50 2.4E-54 308.1 12.7 135 28-165 1-135 (157)
7 1k44_A Nucleoside diphosphate 100.0 1.5E-49 5.2E-54 300.3 13.8 133 28-163 2-135 (136)
8 1wkj_A Nucleoside diphosphate 100.0 1.2E-49 4.1E-54 301.1 13.0 134 28-164 1-134 (137)
9 1nhk_R Nucleoside diphosphate 100.0 1.3E-49 4.5E-54 303.1 13.2 136 28-166 2-137 (144)
10 2hur_A NDK, nucleoside diphosp 100.0 1.9E-49 6.5E-54 301.6 13.5 136 28-166 2-137 (142)
11 3r9l_A Nucleoside diphosphate 100.0 4.5E-50 1.5E-54 308.7 10.0 138 26-166 5-142 (155)
12 4fkx_A NDK B, nucleoside dipho 100.0 1.4E-49 4.9E-54 307.2 12.7 135 27-164 10-144 (161)
13 3l7u_A Nucleoside diphosphate 100.0 2.1E-49 7.2E-54 309.0 12.3 138 26-166 22-159 (172)
14 2vu5_A Nucleoside diphosphate 100.0 3.9E-49 1.3E-53 301.8 13.0 134 28-164 1-134 (148)
15 1s57_A Nucleoside diphosphate 100.0 8.2E-49 2.8E-53 301.4 13.6 137 27-166 4-140 (153)
16 1u8w_A Nucleoside diphosphate 100.0 6.6E-49 2.2E-53 300.8 13.0 133 28-163 1-133 (149)
17 1pku_A Nucleoside diphosphate 100.0 7E-49 2.4E-53 300.9 13.1 133 28-163 2-134 (150)
18 1xiq_A Nucleoside diphosphate 100.0 5.1E-49 1.7E-53 303.4 12.0 136 26-164 7-142 (157)
19 1nb2_A Nucleoside diphosphate 100.0 3.3E-49 1.1E-53 302.7 10.7 136 28-166 2-137 (150)
20 3bbb_A Nucleoside diphosphate 100.0 1E-48 3.5E-53 300.3 13.4 135 27-164 2-136 (151)
21 1zs6_A Nucleoside diphosphate 100.0 1E-48 3.4E-53 305.0 12.8 136 26-164 19-154 (169)
22 1ehw_A NDPK H4, nucleoside dip 100.0 1.9E-48 6.6E-53 301.4 13.8 136 26-164 22-157 (162)
23 3js9_A Nucleoside diphosphate 100.0 1.5E-48 5.1E-53 300.4 12.7 137 26-165 7-143 (156)
24 3b54_A NDK, NDP kinase, nucleo 100.0 9E-49 3.1E-53 303.2 11.4 138 26-166 11-148 (161)
25 2dxe_A Nucleoside diphosphate 100.0 3.4E-48 1.2E-52 299.8 13.4 135 27-164 6-143 (160)
26 1w7w_A Nucleoside diphosphate 100.0 3.5E-48 1.2E-52 304.9 13.2 138 24-164 28-165 (182)
27 2az3_A Nucleoside diphosphate 100.0 7.9E-48 2.7E-52 298.7 13.4 137 26-165 6-144 (164)
28 4dz6_A Nucleoside diphosphate 100.0 8.2E-48 2.8E-52 304.3 11.3 138 26-166 24-176 (190)
29 1xqi_A Nucleoside diphosphate 100.0 4.5E-45 1.5E-49 290.2 10.5 135 27-164 14-191 (195)
30 3bh7_B Protein XRP2; protein-p 100.0 6.9E-33 2.4E-37 237.3 10.1 113 26-163 233-345 (352)
31 3p04_A Uncharacterized BCR; SE 71.6 3.2 0.00011 28.1 3.0 44 29-76 4-47 (87)
32 3i5g_C Myosin catalytic light 24.5 52 0.0018 23.3 2.9 44 46-97 105-154 (159)
33 4ds7_E Spindle POLE BODY compo 22.8 36 0.0012 20.8 1.4 12 4-15 13-24 (55)
34 3bgh_A Protein HPAA, putative 20.6 1.1E+02 0.0037 24.3 4.1 63 15-77 22-98 (236)
No 1
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=7.3e-52 Score=315.42 Aligned_cols=139 Identities=44% Similarity=0.713 Sum_probs=134.1
Q ss_pred CcccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEe
Q 030583 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLE 103 (175)
Q Consensus 24 ~~~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~ 103 (175)
.+..+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+
T Consensus 3 g~m~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vle 82 (145)
T 4hr2_A 3 GSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLE 82 (145)
T ss_dssp -CCCEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred CcchHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEE
Confidence 44668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCC
Q 030583 104 KENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMS 165 (175)
Q Consensus 104 g~naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~ 165 (175)
|+|||+.||+++|||||..|. |+|||++||.+..+|+||||||+++|.||+++|||+..
T Consensus 83 g~~aV~~~R~l~G~tdp~~A~---pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~fF~~~e 141 (145)
T 4hr2_A 83 GEDAILKNRDLMGATDPKKAE---KGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMN 141 (145)
T ss_dssp EETHHHHHHHHHCCSSTTTSC---TTSHHHHHCSBTTBCSEEECCSHHHHHHHHHHHCCGGG
T ss_pred cCCcHhHHhhccCCCCcccCC---CCCcHHHhcCCcCccceECCCCHHHHHHHHHHhCChhh
Confidence 999999999999999999986 99999999999999999999999999999999998753
No 2
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=4.1e-51 Score=310.82 Aligned_cols=137 Identities=43% Similarity=0.719 Sum_probs=134.5
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~na 82 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDA 82 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
|+.||+++|||||..|+...|+|||++||.+..+|++|||||+++|.+|+++|||+.
T Consensus 83 V~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~ 139 (142)
T 3ztp_A 83 IKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIFSGL 139 (142)
T ss_dssp HHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHHHCCGG
T ss_pred HHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHcCCcc
Confidence 999999999999999999999999999999999999999999999999999999864
No 3
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=2.3e-50 Score=310.29 Aligned_cols=140 Identities=37% Similarity=0.607 Sum_probs=133.3
Q ss_pred CcccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEe
Q 030583 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLE 103 (175)
Q Consensus 24 ~~~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~ 103 (175)
.....|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+
T Consensus 4 ~k~~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvle 83 (155)
T 3fkb_A 4 NKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFE 83 (155)
T ss_dssp --CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred CCcccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 104 KENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 104 g~naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
|+|||+.||+++|||||..|. |+|||++||.+..+|++|||||+++|.||+++||++...
T Consensus 84 g~naV~~~R~l~G~t~p~~a~---PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 143 (155)
T 3fkb_A 84 GKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEEL 143 (155)
T ss_dssp STTHHHHHHHHHCCSSGGGSC---TTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGS
T ss_pred CCCHHHHHHHhcCCCChhhcC---CCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhc
Confidence 999999999999999999875 999999999999999999999999999999999986544
No 4
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=1.7e-50 Score=309.95 Aligned_cols=136 Identities=33% Similarity=0.491 Sum_probs=131.0
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeC
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~ 105 (175)
..+|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 3 ~~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~ 82 (151)
T 3mpd_A 3 GSMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGK 82 (151)
T ss_dssp --CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCC-CC
Q 030583 106 NAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQ-EM 164 (175)
Q Consensus 106 naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~-~~ 164 (175)
|||+.||+++|||||..|. |+|||++||.+..+|++|||||+++|.||+++||+ +.
T Consensus 83 naV~~~R~l~G~t~p~~a~---PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~~ 139 (151)
T 3mpd_A 83 DAVSIGRKLIGETNPQAAS---VGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDV 139 (151)
T ss_dssp THHHHHHHHHCCSSTTTSC---TTSHHHHHCCSSTTCSEEECSSHHHHHHHHHHHTCSCC
T ss_pred cHHHHHHHHhCCCChhhcC---CCChhHHhCCCccceeEEeCCCHHHHHHHHHHhCCCcc
Confidence 9999999999999999875 99999999999999999999999999999999998 54
No 5
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=3.6e-50 Score=306.63 Aligned_cols=138 Identities=32% Similarity=0.495 Sum_probs=130.3
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeee-CHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEee
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRL-DEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~l-t~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g 104 (175)
..+|+||+|||||++.++++|+||++|+++||.|+++||+++ |+++|++||.+|++++||++|++||+|||+++|+|+|
T Consensus 4 ~~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg 83 (146)
T 3evo_A 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG 83 (146)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred CcceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeC
Confidence 347999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 105 ENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 105 ~naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
+|||+.||+++|||||..| .|+|||++||.+..+|++|||||+++|.||+++|||+...
T Consensus 84 ~naV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 142 (146)
T 3evo_A 84 TDAISKIRRLQGNTNPLAS---APGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKM 142 (146)
T ss_dssp TTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHcCCCCcccC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhc
Confidence 9999999999999999998 4999999999999999999999999999999999997543
No 6
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=6.9e-50 Score=308.12 Aligned_cols=135 Identities=39% Similarity=0.656 Sum_probs=131.5
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 80 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA 80 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMS 165 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~ 165 (175)
|+.||+++|||||..|. |+|||++||.+..+|++|||||+++|.+|+++||++..
T Consensus 81 V~~~R~l~GpTdp~~A~---PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e 135 (157)
T 3q8u_A 81 VNVSRHIIGSTNPSEAS---PGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENE 135 (157)
T ss_dssp HHHHHHHHCCSSTTTSC---TTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHcCCCChhhcC---CCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHh
Confidence 99999999999999985 99999999999999999999999999999999999653
No 7
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=1.5e-49 Score=300.25 Aligned_cols=133 Identities=41% Similarity=0.647 Sum_probs=130.2
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 81 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChh-hhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCC
Q 030583 108 ITDWRALIGPTDAK-KAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQE 163 (175)
Q Consensus 108 V~~~r~l~Gp~~p~-~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~ 163 (175)
|+.||+++|||+|. .| .|+|||++||.+..+|++|||||+++|.+|+++||++
T Consensus 82 V~~~R~l~G~t~p~~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~ 135 (136)
T 1k44_A 82 IAAVRQLAGGTDPVQAA---APGTIRGDFALETQFNLVHGSDSAESAQREIALWFPG 135 (136)
T ss_dssp HHHHHHHHCCSSTTTTS---CTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHhCCCCccccC---CCCCcHHHhcCCccceEEEeCCCHHHHHHHHHHhCCC
Confidence 99999999999999 87 5999999999999999999999999999999999985
No 8
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=1.2e-49 Score=301.11 Aligned_cols=134 Identities=37% Similarity=0.658 Sum_probs=130.7
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
|+.||+++|||+|..| .|+|||++||.+..+|++|||||+++|.+|+++||++.
T Consensus 81 V~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~ 134 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDA---LPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPE 134 (137)
T ss_dssp HHHHHHHHCCSSTTTC---CTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCGG
T ss_pred HHHHHHHhCCCCCCcC---CCCcchHHhCCCcccceEEecCCHHHHHHHHHHhCChh
Confidence 9999999999999998 49999999999999999999999999999999999864
No 9
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=1.3e-49 Score=303.09 Aligned_cols=136 Identities=40% Similarity=0.634 Sum_probs=131.7
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
|+.||+++|||+|..| .|+|||++||.+..+|++|||||+++|.+|+++||++...
T Consensus 82 V~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 137 (144)
T 1nhk_R 82 VLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEI 137 (144)
T ss_dssp HHHHHHHHCCSSGGGC---CTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHCCGGGC
T ss_pred HHHHHHHhCCCCCCcC---CCCcchHHhCCCCcceeEEeCCCHHHHHHHHHHhCCchhh
Confidence 9999999999999998 4999999999999999999999999999999999986533
No 10
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=1.9e-49 Score=301.61 Aligned_cols=136 Identities=38% Similarity=0.634 Sum_probs=131.9
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
.|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
|+.||+++|||+|..| .|+|||++||.+..+|++|||||+++|.+|+++||++...
T Consensus 82 V~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 137 (142)
T 2hur_A 82 VQRHRDLLGATNPANA---LAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEV 137 (142)
T ss_dssp HHHHHHHHCCSSTTTS---CTTSHHHHHCSSSTTCSEEECSSHHHHHHHHHHHCCTTCS
T ss_pred HHHHHHHhCCCCcccC---CCCcchHHhCCCcccceEEeCCCHHHHHHHHHHhCCchhh
Confidence 9999999999999998 4999999999999999999999999999999999987543
No 11
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=4.5e-50 Score=308.73 Aligned_cols=138 Identities=32% Similarity=0.590 Sum_probs=106.4
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeC
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~ 105 (175)
..+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 5 m~~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~ 84 (155)
T 3r9l_A 5 MARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGA 84 (155)
T ss_dssp CCSCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEEST
T ss_pred cchheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 106 NAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 106 naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
|||+.||+++|||||..|. |+|||++||.+..+|++|||||+++|.||+++||++...
T Consensus 85 naV~~~R~l~G~t~p~~a~---PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 142 (155)
T 3r9l_A 85 NVVSISRTMMGVTKPAESA---PGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEV 142 (155)
T ss_dssp THHHHHHHHHCCSCTTTCC---TTSHHHHHCCSSTTCCEEECSSHHHHHHHHHHHCCSTTC
T ss_pred CHHHHHHHhcCCCChhhcC---CCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChHhc
Confidence 9999999999999999875 999999999999999999999999999999999987544
No 12
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=1.4e-49 Score=307.20 Aligned_cols=135 Identities=35% Similarity=0.630 Sum_probs=131.2
Q ss_pred cceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCC
Q 030583 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (175)
Q Consensus 27 ~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~n 106 (175)
..|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+|+|+|
T Consensus 10 ~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n 89 (161)
T 4fkx_A 10 PSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLG 89 (161)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred CcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 107 AITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 107 aV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
||+.||+++|||||..|. |+|||++||.+..+|++|||||+++|.|||++||++.
T Consensus 90 aV~~~R~l~GpTdp~~A~---PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~ 144 (161)
T 4fkx_A 90 VVKGGRVLLGATNPADSL---PGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKAE 144 (161)
T ss_dssp HHHHHHHHHCCSSGGGCC---TTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGG
T ss_pred hHHHHHHHhcCCChhhcC---CCChhHhhCCCccceeEEeCCCHHHHHHHHHHcCChh
Confidence 999999999999999885 9999999999999999999999999999999999864
No 13
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-49 Score=309.01 Aligned_cols=138 Identities=36% Similarity=0.601 Sum_probs=133.4
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeC
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~ 105 (175)
..+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 22 ~~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~ 101 (172)
T 3l7u_A 22 ANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGL 101 (172)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEEST
T ss_pred chhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 106 NAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 106 naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
|||+.||+++|||||..|. |+|||++||.+..+|+|||||++++|.||+++||++...
T Consensus 102 naV~~~R~l~GpTdp~~A~---PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~fF~~~e~ 159 (172)
T 3l7u_A 102 NVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEEL 159 (172)
T ss_dssp THHHHHHHHHCCSSTTTCC---TTSHHHHHCCCGGGCCEEECSSHHHHHHHHHHHCCGGGS
T ss_pred CHHHHHHHHcCCCChhhcC---CCChhHHhcCCCCCcEEEeCCCHHHHHHHHHHcCChhhc
Confidence 9999999999999999875 999999999999999999999999999999999996543
No 14
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=3.9e-49 Score=301.80 Aligned_cols=134 Identities=39% Similarity=0.680 Sum_probs=130.5
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV 80 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
|+.||+++|||+|..+. |+|||++||.+..+|++|||||+++|.+|+++||++.
T Consensus 81 V~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~ 134 (148)
T 2vu5_A 81 VDTARNMMGKTRPHEAA---PGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEE 134 (148)
T ss_dssp HHHHHHHHCCSSTTTSC---TTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhCCCCccccC---CCChHHHhcCCcccceEEeCCCHHHHHHHHHHhCCch
Confidence 99999999999999875 9999999999999999999999999999999999854
No 15
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=8.2e-49 Score=301.39 Aligned_cols=137 Identities=36% Similarity=0.631 Sum_probs=132.8
Q ss_pred cceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCC
Q 030583 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (175)
Q Consensus 27 ~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~n 106 (175)
..|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+++|+|
T Consensus 4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 83 (153)
T 1s57_A 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVG 83 (153)
T ss_dssp CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETT
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEeccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 107 AITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 107 aV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
||+.||+++|||+|..|. |+|||+.||.+..+|++||||++++|.+|+++||++...
T Consensus 84 aV~~~R~l~G~t~p~~A~---pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 140 (153)
T 1s57_A 84 VVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGEL 140 (153)
T ss_dssp HHHHHHHHHCCSSTTTSC---TTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHhCCCCccccC---CcchHHHhcCCCcCceEEcCCCHHHHHHHHHHhCCchhc
Confidence 999999999999999986 999999999999999999999999999999999986543
No 16
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=6.6e-49 Score=300.75 Aligned_cols=133 Identities=36% Similarity=0.644 Sum_probs=129.9
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQE 163 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~ 163 (175)
|+.||+++|||+|..|. |+|||+.||.+..+|++|||||+++|.+|+++|||+
T Consensus 81 V~~~R~l~G~t~p~~A~---pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~ 133 (149)
T 1u8w_A 81 VLTGRKIIGATNPAASE---PGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPD 133 (149)
T ss_dssp HHHHHHHHCCSSTTTCC---TTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHCTT
T ss_pred hHHHHHHhCCCCcccCC---CCCcHHHHCCCCcCceEEecCCHHHHHHHHHHhCch
Confidence 99999999999999885 999999999999999999999999999999999964
No 17
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=7e-49 Score=300.89 Aligned_cols=133 Identities=33% Similarity=0.611 Sum_probs=130.0
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 81 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV 81 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCC
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQE 163 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~ 163 (175)
|+.||+++|||+|..|. |+|||++||.+..+|++|||||+++|.+|+++|||+
T Consensus 82 V~~~R~l~G~t~p~~A~---pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~ 134 (150)
T 1pku_A 82 VATGRRIIGATRPWEAA---PGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPE 134 (150)
T ss_dssp HHHHHHHHCCSSGGGSC---TTSHHHHHCSBTTBCSEEECSSHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCCCCcccCC---CCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCcH
Confidence 99999999999999884 999999999999999999999999999999999964
No 18
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=5.1e-49 Score=303.42 Aligned_cols=136 Identities=34% Similarity=0.564 Sum_probs=131.3
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeC
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~ 105 (175)
..+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 7 ~~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 86 (157)
T 1xiq_A 7 HHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGV 86 (157)
T ss_dssp --CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEEST
T ss_pred chhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEecc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 106 NAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 106 naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
|||+.||+++|||||..|. |+|||+.||.+..+|++|||||+++|.||+++||++.
T Consensus 87 naV~~~R~l~G~T~p~~A~---pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~ 142 (157)
T 1xiq_A 87 DMVKQGRKLIGETNPLTSN---TGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAE 142 (157)
T ss_dssp THHHHHHHHHCCSSTTTSC---TTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGG
T ss_pred cchHHHHHHcCCCCCCcCC---CCChHHHhCCCCCceeEEeCCCHHHHHHHHHHhCCcc
Confidence 9999999999999999985 9999999999999999999999999999999999864
No 19
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=3.3e-49 Score=302.74 Aligned_cols=136 Identities=38% Similarity=0.606 Sum_probs=131.6
Q ss_pred ceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCCh
Q 030583 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (175)
Q Consensus 28 ~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~na 107 (175)
+|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na 81 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 81 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 108 ITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 108 V~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
|+.||+++|||+|..+. |+|||++||.+..+|++|||||+++|.+|+++||++...
T Consensus 82 V~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 137 (150)
T 1nb2_A 82 AATARQILGATNPSDAA---PGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEA 137 (150)
T ss_dssp HHHHHHHHCCSSTTSSC---TTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHSCSSSS
T ss_pred HHHHHHHhCCCCcccCC---CCChHHHhcCCccceeEEeCCCHHHHHHHHHHhCCcccc
Confidence 99999999999999875 999999999999999999999999999999999986433
No 20
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=1e-48 Score=300.28 Aligned_cols=135 Identities=37% Similarity=0.632 Sum_probs=131.6
Q ss_pred cceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCC
Q 030583 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (175)
Q Consensus 27 ~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~n 106 (175)
.+|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+|+|+|
T Consensus 2 ~~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 81 (151)
T 3bbb_A 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN 81 (151)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred CcceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 107 AITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 107 aV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
||+.||+++|||+|..|. |+|||++||.+..+|++|||||+++|.+|+++||++.
T Consensus 82 aV~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~ 136 (151)
T 3bbb_A 82 VVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPE 136 (151)
T ss_dssp HHHHHHHHHCCSSGGGCC---TTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhCCCCcccCC---CCCcHHHhcCCcccceEEecCCHHHHHHHHHHhCChh
Confidence 999999999999999886 9999999999999999999999999999999999864
No 21
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1e-48 Score=305.02 Aligned_cols=136 Identities=38% Similarity=0.620 Sum_probs=132.7
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeC
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~ 105 (175)
..+|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 19 ~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 98 (169)
T 1zs6_A 19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGL 98 (169)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred hhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 106 NAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 106 naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
|||+.||+++|||+|..|. |+|||++||.+..+|++||||++++|.||+++||++.
T Consensus 99 ~aV~~~R~l~G~t~p~~A~---pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~ 154 (169)
T 1zs6_A 99 DVVRTSRALIGATNPADAP---PGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRAD 154 (169)
T ss_dssp THHHHHHHHHCCSSGGGSC---TTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHSCGG
T ss_pred CchHHHHHHhCCCCcccCC---CCChHHHHcCCCcCceEEecCCHHHHHHHHHHhCCch
Confidence 9999999999999999885 9999999999999999999999999999999999864
No 22
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.9e-48 Score=301.41 Aligned_cols=136 Identities=35% Similarity=0.604 Sum_probs=131.9
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeC
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~ 105 (175)
...|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 22 ~~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 101 (162)
T 1ehw_A 22 GTRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGY 101 (162)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred chhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEech
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 106 NAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 106 naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
|||+.||+++|||+|..|. |+|||++||.+..+|+|||||++++|.+|+++||++.
T Consensus 102 naV~~~R~l~G~T~p~~A~---PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~ 157 (162)
T 1ehw_A 102 NVVRASRAMIGHTDSAEAA---PGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSS 157 (162)
T ss_dssp THHHHHHHHHCCSSGGGSC---TTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHCCGG
T ss_pred hHHHHHHHHhCCCCCCCCC---CCChHHHhCCCCCCeEEEECCCHHHHHHHHHHhCChh
Confidence 9999999999999999984 9999999999999999999999999999999999753
No 23
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=1.5e-48 Score=300.41 Aligned_cols=137 Identities=31% Similarity=0.484 Sum_probs=131.7
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeC
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~ 105 (175)
..+|+|.+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 7 ~~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~ 86 (156)
T 3js9_A 7 HHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGP 86 (156)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEET
T ss_pred cchhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEecc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCC
Q 030583 106 NAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMS 165 (175)
Q Consensus 106 naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~ 165 (175)
|||++||+++|||||..|. |+|||++||.+..+|++|||||+++|.||+++||++..
T Consensus 87 naV~~~R~l~G~T~p~~A~---PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e 143 (156)
T 3js9_A 87 EAIKIGRNLVGLTSPVESA---AGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQ 143 (156)
T ss_dssp THHHHHHHHHCCSSGGGSC---TTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHSCGGG
T ss_pred chHHHHHHhcCCCCccccC---CCCHHHHhCCCCCceeEEcCCCHHHHHHHHHHcCChhh
Confidence 9999999999999999885 99999999999999999999999999999999998643
No 24
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-49 Score=303.15 Aligned_cols=138 Identities=31% Similarity=0.613 Sum_probs=126.3
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeC
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~ 105 (175)
+..|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 11 ~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 90 (161)
T 3b54_A 11 SQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGK 90 (161)
T ss_dssp CCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEEST
T ss_pred cccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEecc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 106 NAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 106 naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
|||+.||+++|||+|..|. |+|||++||.+..+|+||||||+++|.||+++||++...
T Consensus 91 naV~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 148 (161)
T 3b54_A 91 DVVRQGRTILGATNPLGSA---PGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEEL 148 (161)
T ss_dssp THHHHHHHHHCCSSGGGSC---TTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHSCSTTC
T ss_pred ChHHHHHHHhCCCCcccCC---CCChHHHhcCCCCCceEEeCCCHHHHHHHHHHhCCchhc
Confidence 9999999999999999875 999999999999999999999999999999999986543
No 25
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=3.4e-48 Score=299.81 Aligned_cols=135 Identities=40% Similarity=0.650 Sum_probs=131.2
Q ss_pred cceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeCC
Q 030583 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (175)
Q Consensus 27 ~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~n 106 (175)
..|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++++|+|+|
T Consensus 6 ~~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 85 (160)
T 2dxe_A 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRY 85 (160)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred cCCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCChhhhhhcCCCchhccccCCCCc---ceeEcCCCHHHHHHHHHhcCCCC
Q 030583 107 AITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEK---NCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 107 aV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~---N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
||+.||+++|||+|..|. |+|||++||.+..+ |++|||||+++|.+|+++||++.
T Consensus 86 aV~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~fF~~~ 143 (160)
T 2dxe_A 86 AVEVVRKMAGATDPKDAA---PGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPE 143 (160)
T ss_dssp HHHHHHHHHCCSSGGGSC---TTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhCCCCCCcCC---CCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHHhCCch
Confidence 999999999999999975 99999999999999 99999999999999999999854
No 26
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=3.5e-48 Score=304.90 Aligned_cols=138 Identities=36% Similarity=0.585 Sum_probs=132.4
Q ss_pred CcccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEe
Q 030583 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLE 103 (175)
Q Consensus 24 ~~~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~ 103 (175)
.+..+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|+
T Consensus 28 ~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 107 (182)
T 1w7w_A 28 PEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWE 107 (182)
T ss_dssp --CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred ccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEe
Confidence 33668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCCC
Q 030583 104 KENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 104 g~naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~~ 164 (175)
|+|||+.||+++|||+|..|. |+|||++||.+..+|+||||||+++|.+|+++||++.
T Consensus 108 G~naV~~~R~l~G~T~p~~A~---PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~ 165 (182)
T 1w7w_A 108 GEGVITYGRKLIGATDPQKSA---PGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPE 165 (182)
T ss_dssp STTHHHHHHHHHCCSSGGGSC---TTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGG
T ss_pred cccHHHHHHHHhCCCCCCCCC---CCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCCch
Confidence 999999999999999999984 9999999999999999999999999999999999853
No 27
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=7.9e-48 Score=298.66 Aligned_cols=137 Identities=37% Similarity=0.671 Sum_probs=132.0
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeC
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~ 105 (175)
..+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 6 ~~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 85 (164)
T 2az3_A 6 DHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGA 85 (164)
T ss_dssp -CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHH--HHHHHHHhcCCCCC
Q 030583 106 NAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPE--SAQREMSFFFQEMS 165 (175)
Q Consensus 106 naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~--~a~rEi~~fF~~~~ 165 (175)
|||+.||+++|||+|..+. |+|||+.||.+..+|+||||||++ +|.||+++||++..
T Consensus 86 ~aV~~~R~l~G~t~p~~a~---pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~fF~~~e 144 (164)
T 2az3_A 86 DATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDE 144 (164)
T ss_dssp THHHHHHHHHCCSSGGGSC---TTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCTTS
T ss_pred cHHHHHHHHhCCCCccccC---CCcchhhhcccccCceEEecCCcchhhHHHHHHHcCCchh
Confidence 9999999999999999875 999999999999999999999999 99999999998643
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=8.2e-48 Score=304.27 Aligned_cols=138 Identities=29% Similarity=0.470 Sum_probs=133.1
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHH-----HhcCCcchHHHHHHhccCCEEEE
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYA-----EHSSRSFFSSLIKYMTSGPVLAM 100 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~-----~~~~~~~~~~lv~~mtsGpvial 100 (175)
...|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||. +|++++||++|++||+|||+++|
T Consensus 24 ~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvam 103 (190)
T 4dz6_A 24 MLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTF 103 (190)
T ss_dssp TTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEE
T ss_pred chhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEE
Confidence 4579999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EEeeCChhHHHHHHhCCCChhhhhhcCCCchhccccCCC----------CcceeEcCCCHHHHHHHHHhcCCCCCc
Q 030583 101 VLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDS----------EKNCVHGSDSPESAQREMSFFFQEMSS 166 (175)
Q Consensus 101 ~l~g~naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~----------~~N~vH~Sds~~~a~rEi~~fF~~~~~ 166 (175)
+|+|+|||+.||+++|||||..|. |+|||++||.+. .+|+||||||+++|.|||++||++...
T Consensus 104 vleG~naV~~~R~l~GpTdP~~A~---PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~fF~~~e~ 176 (190)
T 4dz6_A 104 VVEGVESIEVVRKLCGATEPKLAI---PGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWFKDNEI 176 (190)
T ss_dssp EEEEETHHHHHHHHHCCSSGGGSC---TTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHHHCCGGGS
T ss_pred EEecCCHHHHHHHHcCCCChhhcC---CCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHHcCCcHHh
Confidence 999999999999999999999985 999999999999 999999999999999999999997543
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=4.5e-45 Score=290.19 Aligned_cols=135 Identities=39% Similarity=0.620 Sum_probs=130.5
Q ss_pred cceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHH-------------H----------------
Q 030583 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFY-------------A---------------- 77 (175)
Q Consensus 27 ~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y-------------~---------------- 77 (175)
..|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++|| .
T Consensus 14 ~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 93 (195)
T 1xqi_A 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIG 93 (195)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHS
T ss_pred hhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhc
Confidence 46999999999999999999999999999999999999999999999999 7
Q ss_pred ----HhcCCcchHHHHHHhccCCEEEEEEeeCChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCc----------ce
Q 030583 78 ----EHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEK----------NC 143 (175)
Q Consensus 78 ----~~~~~~~~~~lv~~mtsGpvial~l~g~naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~----------N~ 143 (175)
.|.+++||++|++||+|||+++|+++|+|||++||+++|||+|..|. |+|||+.||.+..+ |+
T Consensus 94 ~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~---pgTIRg~fg~~~~~~~~~~~~~~~N~ 170 (195)
T 1xqi_A 94 TDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAP---PGTIRGDYSIDSPDLAAEEGRVVFNL 170 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSC---TTSHHHHHCCCCHHHHHHTTSCCCCS
T ss_pred cccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCC---CCchhHhhcCchhhhccccccccceE
Confidence 88999999999999999999999999999999999999999999995 99999999999888 99
Q ss_pred eEcCCCHHHHHHHHHhcCCCC
Q 030583 144 VHGSDSPESAQREMSFFFQEM 164 (175)
Q Consensus 144 vH~Sds~~~a~rEi~~fF~~~ 164 (175)
||||||+++|.||+++||++.
T Consensus 171 vHgSDS~esA~rEi~~~F~~~ 191 (195)
T 1xqi_A 171 VHASDSPSEAEREIRFWFREE 191 (195)
T ss_dssp EEECSSHHHHHHHHHHHCCGG
T ss_pred EEcCCCHHHHHHHHHHhCChh
Confidence 999999999999999999864
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.98 E-value=6.9e-33 Score=237.26 Aligned_cols=113 Identities=15% Similarity=0.317 Sum_probs=107.8
Q ss_pred ccceeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhcCCcchHHHHHHhccCCEEEEEEeeC
Q 030583 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (175)
Q Consensus 26 ~~~e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~mtsGpvial~l~g~ 105 (175)
...|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|+ ++|++||+|||+++|+++|+
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~ 307 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGD 307 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEEST
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECc
Confidence 5679999999999999999999999999999999999999999999999999997 67999999999999999999
Q ss_pred ChhHHHHHHhCCCChhhhhhcCCCchhccccCCCCcceeEcCCCHHHHHHHHHhcCCC
Q 030583 106 NAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQE 163 (175)
Q Consensus 106 naV~~~r~l~Gp~~p~~a~~~~p~slR~~fG~~~~~N~vH~Sds~~~a~rEi~~fF~~ 163 (175)
|||+.||+++|+++| .|++||||++++|.||+++||+.
T Consensus 308 ~av~~~R~l~g~t~p--------------------gN~vHgSds~esA~~Ei~~fF~~ 345 (352)
T 3bh7_B 308 GAVEVCQLIVNEIFN--------------------GTKMFVSESKETASGDVDSFYNF 345 (352)
T ss_dssp THHHHHHHHHHHHCT--------------------TSCEEECSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCC--------------------CceEEecCCHHHHHHHHHHhcCc
Confidence 999999999999984 29999999999999999999964
No 31
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=71.57 E-value=3.2 Score=28.07 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=37.1
Q ss_pred eeEEEEEcCCcccCCcHHHHHHHHHHcCCeEEEEEEeeeCHHHHHHHH
Q 030583 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFY 76 (175)
Q Consensus 29 e~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y 76 (175)
...+++++|..+.. +.+|.+.|.+..-.|.++.. ++.++|+++.
T Consensus 4 ~~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~~--ld~~~AqRiv 47 (87)
T 3p04_A 4 QSTIVPVELHSFED--AQVIGGAFRDGDAVVFDMSL--LSREEARRIV 47 (87)
T ss_dssp CCSCEEEECSSGGG--HHHHHHHHHTTCCEEEECTT--SCHHHHHHHH
T ss_pred CcEEEEEecCcHHH--HHHHHHHHHCCCEEEEECCC--CCHHHHHHHH
Confidence 35688999999976 78999999998899988874 5888888885
No 32
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=24.54 E-value=52 Score=23.33 Aligned_cols=44 Identities=25% Similarity=0.433 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCeEEEEEEeeeCHHHHHHHHHHhc------CCcchHHHHHHhccCCE
Q 030583 46 DEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS------SRSFFSSLIKYMTSGPV 97 (175)
Q Consensus 46 g~Ii~~l~~~Gf~I~~~k~~~lt~~~a~~~y~~~~------~~~~~~~lv~~mtsGpv 97 (175)
.++.+.+..-|. .++++++.++..... |+-.|.+.+..|.+||.
T Consensus 105 ~el~~~l~~~g~--------~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 105 AEIRNVLKMLGE--------RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp HHHHHHHHHSSS--------CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhCC--------CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 344455555553 478999999987532 35689999999999984
No 33
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=22.78 E-value=36 Score=20.79 Aligned_cols=12 Identities=42% Similarity=1.013 Sum_probs=9.6
Q ss_pred hhhHHHHHHHhh
Q 030583 4 RVVGLFILACIS 15 (175)
Q Consensus 4 ~~~~~~~~~~~~ 15 (175)
..|.||+|+||+
T Consensus 13 KTVAL~VlaciR 24 (55)
T 4ds7_E 13 KTVALLVLACVR 24 (55)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 357899999987
No 34
>3bgh_A Protein HPAA, putative neuraminyllactose-binding hemagglutinin; structural genomics, unknown function, PSI-2, protein struct initiative; 2.45A {Helicobacter pylori}
Probab=20.56 E-value=1.1e+02 Score=24.27 Aligned_cols=63 Identities=8% Similarity=0.097 Sum_probs=42.2
Q ss_pred hcCcCCCCCCcccceeEEEEEcCCc-ccCC------------cHHHHHHHHHHcCCeEEEEEEe-eeCHHHHHHHHH
Q 030583 15 SSPCRSLSNGSVEKEKTLAMIKPDG-LSGN------------YTDEIKKVILESGFSILRERVV-RLDEDGAKTFYA 77 (175)
Q Consensus 15 ~~~~~~~~~~~~~~e~tl~lIKPda-~~~~------------~~g~Ii~~l~~~Gf~I~~~k~~-~lt~~~a~~~y~ 77 (175)
.|-|...+.-.....++++|++|.- +... ++-.|-..|+++|+.+...+-. .||.++-++.|.
T Consensus 22 ~f~Y~i~~~Q~p~n~~~I~ll~P~iq~sdNi~k~Y~~kF~~al~~qIq~il~krGY~v~~~~d~d~Lt~~~Kkk~yl 98 (236)
T 3bgh_A 22 HFHYPIKGKQEPKNSHLVVLIEPKIEINKVIPESYQKEFEKSLFLQLSSFLERKGYSVSQFKDASEIPQDIKEKALL 98 (236)
T ss_dssp CCCCCCCSCCCCCCCCEEEEECCEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEESSGGGCCHHHHHHCSE
T ss_pred EEecccchhhcCccceEEEEecccceecccccHHHHHHHHHHHHHHHHHHHHhCCceEeecCChhhCCHHHhhceEE
Confidence 4666666666677789999999974 2222 2344556667899999986433 566666666664
Done!