RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 030583
(175 letters)
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein.
Length = 177
Score = 306 bits (785), Expect = e-108
Identities = 126/169 (74%), Positives = 148/169 (87%), Gaps = 1/169 (0%)
Query: 8 LFILACISSPCRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRL 67
LF+L S P R S+G+ E+E+TLAMIKPDGLSGNYT+ IK+VILESGFSI++E +L
Sbjct: 9 LFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQL 68
Query: 68 DEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISH 127
DED A FYAEHSSRSFF SL+KYMTSGPVL MVLEKENA++DWR LIGPTDA+KAKISH
Sbjct: 69 DEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISH 128
Query: 128 PHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSSDEV-TRHDEL 175
P+SIRAMCGLDSEKNCVHGSDSPESA+RE+SFFF ++SS +V ++HDEL
Sbjct: 129 PNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGDVSSGDVASQHDEL 177
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase
homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced
apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is
almost exclusively found in testis, especially in the
flagella of spermatids and spermatozoa, in association
with axoneme microtubules, and may play a role in
spermatogenesis by increasing the ability of late-stage
spermatids to eliminate reactive oxygen species. It
belongs to the nm23 Group II genes and appears to differ
from the other human NDPks in that it lacks two
important catalytic site residues, and thus does not
appear to possess NDP kinase activity. NDPk5 confers
protection from cell death by Bax and alters the
cellular levels of several antioxidant enzymes,
including glutathione peroxidase 5 (Gpx5).
Length = 132
Score = 195 bits (497), Expect = 4e-65
Identities = 67/133 (50%), Positives = 97/133 (72%), Gaps = 2/133 (1%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TLA+IKPD + +EI+ +ILESGF+I+++R ++L + FYAEH + FF L
Sbjct: 1 ERTLAIIKPDAVH--KAEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHL 58
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ YM+SGP++AMVL + NAI+ W+ L+GPT++ KAK +HP S+RA+ G D +N VHGSD
Sbjct: 59 VAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSD 118
Query: 149 SPESAQREMSFFF 161
S SA+RE+ F F
Sbjct: 119 SFSSAEREIRFMF 131
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific
conversions of nucleoside diphosphates to nucleoside
triphosphates. These enzymes play important roles in
bacterial growth, signal transduction and pathogenicity.
Length = 135
Score = 193 bits (492), Expect = 3e-64
Identities = 67/135 (49%), Positives = 93/135 (68%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TLA+IKPD + EI GF I+ ++++L E+ A+ FYAEH + FF+ L
Sbjct: 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEEQAEEFYAEHEGKPFFNDL 60
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++MTSGPV+AMVLE E+A+ WR L+GPTD ++A P +IR GLD +N VHGSD
Sbjct: 61 VEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREA---APGTIRGDFGLDIGRNAVHGSD 117
Query: 149 SPESAQREMSFFFQE 163
SPESA+RE++ FF E
Sbjct: 118 SPESAEREIALFFPE 132
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase.
Length = 135
Score = 184 bits (469), Expect = 1e-60
Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL +IKPD + EI + GF I+ ++++L + A+ YAEH + FF L
Sbjct: 1 ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLTREQAEEHYAEHKGKPFFPGL 60
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++MTSGPV+AMVLE ENA++ R L+G T+ +A P +IR + +N VHGSD
Sbjct: 61 VEFMTSGPVVAMVLEGENAVSVVRELMGATNPAEA---APGTIRGDFAVSIGRNAVHGSD 117
Query: 149 SPESAQREMSFFFQE 163
SPESA+RE++ FF E
Sbjct: 118 SPESAEREIALFFPE 132
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate
kinase/apyrimidinic endonuclease/3'-; Validated.
Length = 134
Score = 174 bits (443), Expect = 1e-56
Identities = 58/135 (42%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T ++IKPD + EI + G I+ ++++L + A+ YAEH + FF L
Sbjct: 2 ERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGEL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++MTSGPV+ MVLE ENAI R L+G T+ +A P +IR L +N VHGSD
Sbjct: 62 VEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEAA---PGTIRGDFALSIGENVVHGSD 118
Query: 149 SPESAQREMSFFFQE 163
SPESA RE++ FF E
Sbjct: 119 SPESAAREIALFFSE 133
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 171 bits (437), Expect = 7e-56
Identities = 58/133 (43%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL +IKPDG+ EI G I+ ++++L E+ A+ YAEH + FF L
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPEL 60
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++MTSGPV+AMVLE ENA+ R L+G T+ A P +IR L +N VHGSD
Sbjct: 61 VEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAA---PGTIRGDFALSIGRNIVHGSD 117
Query: 149 SPESAQREMSFFF 161
S ESA+RE++ +F
Sbjct: 118 SVESAEREIALWF 130
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks):
NDP kinases, responsible for the synthesis of nucleoside
triphosphates (NTPs), are involved in numerous
regulatory processes associated with proliferation,
development, and differentiation. They are vital for
DNA/RNA synthesis, cell division, macromolecular
metabolism and growth. The enzymes generate NTPs or
their deoxy derivatives by terminal (gamma)
phosphotransfer from an NTP such as ATP or GTP to any
nucleoside diphosphate (NDP) or its deoxy derivative.
The sequence of NDPk has been highly conserved through
evolution. There is a single histidine residue conserved
in all known NDK isozymes, which is involved in the
catalytic mechanism. The first confirmed metastasis
suppressor gene was the NDP kinase protein encoded by
the nm23 gene. Unicellular organisms generally possess
only one gene encoding NDP kinase, while most
multicellular organisms possess not only an ortholog
that provides most of the NDP kinase enzymatic activity
but also multiple divergent paralogous genes. The human
genome codes for at least nine NDP kinases and can be
classified into two groups, Groups I and II, according
to their genomic architecture and distinct enzymatic
activity. Group I isoforms (A-D) are well-conserved,
catalytically active, and share 58-88% identity between
each other, while Group II are more divergent, with only
NDPk6 shown to be active. NDP kinases exist in two
different quaternary structures; all known eukaryotic
enzymes are hexamers, while some bacterial enzymes are
tetramers, as in Myxococcus. The hexamer can be viewed
as trimer of dimers, while tetramers are dimers of
dimers, with the dimerization interface conserved.
Length = 133
Score = 167 bits (426), Expect = 3e-54
Identities = 64/133 (48%), Positives = 93/133 (69%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TLA+IKPD ++ EI I ++GF I+ + + L E+ A+ FY EH R FF L
Sbjct: 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDL 60
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++M+SGPV+AM+LEK+NA+ +WR ++GPT+ + A+ P S+RA G D +N VHGSD
Sbjct: 61 VQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSD 120
Query: 149 SPESAQREMSFFF 161
S ESA RE++FFF
Sbjct: 121 SVESAAREIAFFF 133
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport
and metabolism].
Length = 135
Score = 158 bits (401), Expect = 2e-50
Identities = 59/135 (43%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL++IKPD + EI + G I+ ++V+L + A+ YAEH + FF L
Sbjct: 3 ERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGEL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
++++TSGPV+AMVLE ENAI+ R L+G T+ A P +IR L +N VHGSD
Sbjct: 63 VEFITSGPVVAMVLEGENAISVVRKLMGATNPANAA---PGTIRGDFALSVGENVVHGSD 119
Query: 149 SPESAQREMSFFFQE 163
SPESA+RE++ FF +
Sbjct: 120 SPESAEREIALFFSK 134
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6,
NDPk6, NM23-H6; NME6; Inhibitor of p53-induced
apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding
NDPk6 is expressed mainly in mitochondria, but also
found at a lower level in most tissues. NDPk6 has all
nine residues considered crucial for enzyme structure
and activity, and has been found to have NDP kinase
activity. It may play a role in cell growth and cell
cycle progression. The nm23-H6 gene locus has been
implicated in a variety of malignant tumors.
Length = 135
Score = 157 bits (399), Expect = 3e-50
Identities = 62/134 (46%), Positives = 92/134 (68%), Gaps = 1/134 (0%)
Query: 29 EKTLAMIKPDGLSGNYT-DEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87
+ TLA+IKPD ++ + ++++IL +GF+I+R++ +R + A+ FYAEH + F+
Sbjct: 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDR 60
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
L+ +MTSGP A++L ENAI WRAL+GPT +A+ S P SIR + GL +N HGS
Sbjct: 61 LVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGS 120
Query: 148 DSPESAQREMSFFF 161
DSP SAQRE++ FF
Sbjct: 121 DSPASAQREIALFF 134
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin
domain-containing proteins (TXNDC3 and TXNDC6): Txl-2
(TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of
Group II N-terminal thioredoxin domains followed by one
or three NDP kinase domains, respectively. Sptrx-2,
which has a tissue specific distribution in human
testis, has been considered as a member of the nm23
family (nm23-H8) and exhibits a high homology with sea
urchin IC1 (intermediate chain-1) protein, a component
of the sperm axonemal outer dynein arm complex. Txl-2 is
mainly represented in close association with
microtubules within tissues with cilia and flagella such
as seminiferous epithelium (spermatids) and lung airway
epithelium, suggesting possible role in control of
microtubule stability and maintenance.
Length = 132
Score = 149 bits (379), Expect = 4e-47
Identities = 64/133 (48%), Positives = 88/133 (66%), Gaps = 1/133 (0%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E TLA+IKPD ++ DEI + I E+GF IL ++ + L E+ A+ FY EH +F L
Sbjct: 1 EYTLALIKPDAVA-EKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDL 59
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++MTSGP L +VL KENA+ +WR L+GPTD ++AK P S+RA D N VHGS
Sbjct: 60 VEFMTSGPSLILVLSKENAVEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSS 119
Query: 149 SPESAQREMSFFF 161
S E A++E+ FFF
Sbjct: 120 SAEEAEKEIDFFF 132
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 131
Score = 146 bits (370), Expect = 7e-46
Identities = 62/133 (46%), Positives = 94/133 (70%), Gaps = 2/133 (1%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
EKTLA+IKPD S +I ++I ++GF+I + ++ +L A+ FYAEH S+ F++ L
Sbjct: 1 EKTLALIKPDAYS--KIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNEL 58
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++MTSGP++AM L ++AI++WR L+GPT++ A+ P+SIRA+ G D +N HGSD
Sbjct: 59 VQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSD 118
Query: 149 SPESAQREMSFFF 161
S SA RE+ FFF
Sbjct: 119 SVASAARELEFFF 131
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional.
Length = 137
Score = 124 bits (311), Expect = 6e-37
Identities = 58/134 (43%), Positives = 83/134 (61%), Gaps = 3/134 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
+T MIKPDG+ + I + I + GF IL + ++L + AK FY HS+R F++ L
Sbjct: 2 SRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
YM+SGP++A LE++NA+ WR +IG TD K+A +IRA+ E N VHGSD
Sbjct: 62 CNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAG---TIRALYAESKEANAVHGSD 118
Query: 149 SPESAQREMSFFFQ 162
S +A E+SFFF+
Sbjct: 119 SDANAALEISFFFK 132
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional.
Length = 139
Score = 117 bits (295), Expect = 2e-34
Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 30 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLI 89
+T MIKPD + + I +I +GF I+ ++ +L A+TFYA H+ R F+ L+
Sbjct: 5 RTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELV 64
Query: 90 KYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSDS 149
++M+ GP++A +LEKENA+ D+R LIG T+ A +IR +N VHGSDS
Sbjct: 65 EFMSRGPIVAAILEKENAVEDFRTLIGATNPADAAEG---TIRKKYAKSIGENAVHGSDS 121
Query: 150 PESAQREMSFFF 161
E+AQ E +F F
Sbjct: 122 DENAQIEGAFHF 133
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic;
Provisional.
Length = 149
Score = 111 bits (280), Expect = 5e-32
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87
E+T M+KPDG+ EI K + G+ ++ ++++ + A+ Y EH + FF
Sbjct: 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPG 61
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
L+KY++SGPV+ MV E +N + R L+G T+ + S P +IR +D +N +HGS
Sbjct: 62 LVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLE---SAPGTIRGDFCVDVGRNVIHGS 118
Query: 148 DSPESAQREMSFFFQ 162
DS ESA+RE++ +F+
Sbjct: 119 DSVESAKREIALWFK 133
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional.
Length = 134
Score = 111 bits (279), Expect = 5e-32
Identities = 54/137 (39%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
EKE+T +KPD + +I + GF I+ ++++L + A+ +Y EH + F+
Sbjct: 1 EKERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYE 60
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHG 146
LI +MTSG ++AMV+E ENAI+ R +IG T+ +A+ P +IR GL + N +H
Sbjct: 61 RLINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEAE---PGTIRGDFGLYTPANIIHA 117
Query: 147 SDSPESAQREMSFFFQE 163
SDS ESA+RE+ FF E
Sbjct: 118 SDSKESAEREIKLFFGE 134
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 134
Score = 110 bits (276), Expect = 2e-31
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 31 TLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH--SSRSFFSSL 88
T+ +IKP +S EI + IL+ GF I ++ L A+ F E ++
Sbjct: 3 TVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFL-EVYKGVVPELPAM 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ +TSGP +A+ + ENA+ +R GP D + AK P+++RA G D +N VH +D
Sbjct: 62 VDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTD 121
Query: 149 SPESAQREMSFFF 161
PE E+ FFF
Sbjct: 122 LPEDGPLELKFFF 134
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional.
Length = 140
Score = 110 bits (276), Expect = 2e-31
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 6/145 (4%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL ++KPD + + I +GF ++ + RL ++ A FYA H R F+ L
Sbjct: 2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGEL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++M+SGP + M+LEKENA+ D+R LIG TD +A ++R + +N VHGSD
Sbjct: 62 VEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAA---EGTVRKLYADSKGENIVHGSD 118
Query: 149 SPESAQREMSFFFQEMSSDEVTRHD 173
S E+A E FFF S++EV R +
Sbjct: 119 SAENAAIEAGFFF---SAEEVVRVN 140
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase.
Length = 238
Score = 92.2 bits (229), Expect = 2e-23
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E E+T IKPDG+ EI GF ++ +VV ++ A+ Y + R FF+
Sbjct: 87 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFN 146
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHG 146
L +++SGPV+AMV E E I R LIG TD +K S P +IR + +N +HG
Sbjct: 147 GLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQK---SEPGTIRGDLAVVVGRNIIHG 203
Query: 147 SDSPESAQREMSFFFQ 162
SD PE+A+ E++ +F+
Sbjct: 204 SDGPETAKDEINLWFK 219
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional.
Length = 183
Score = 83.7 bits (207), Expect = 1e-20
Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS- 87
E+TL ++KPD + EI ++G I+ ++V+ + + FY SS ++ S
Sbjct: 4 ERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYP--SSEEWYRSV 61
Query: 88 ----------------------------------LIKYMTSGPVLAMVLEKENAITDWRA 113
L+KYMTSGP++AMVL+ A+ R
Sbjct: 62 GNKLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRK 121
Query: 114 LIGPTDAKKAKISHPHSIRAMCGLDSEK----------NCVHGSDSPESAQREMSFFFQE 163
L+GPT KA P +IR +DS N VH SDSPE A+RE+ F+F+E
Sbjct: 122 LVGPTSPHKAP---PGTIRGDYSIDSPDLAAEEGRVVYNLVHASDSPEEAEREIKFWFRE 178
>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional.
Length = 169
Score = 61.4 bits (149), Expect = 2e-12
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 26/166 (15%)
Query: 29 EKTLAMIKPDG----LSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFY-----AEH 79
+KTL +IKPDG L GN ++V G I+ +++ +D A+ Y A
Sbjct: 6 QKTLCIIKPDGVRRGLIGNVVSRFERV----GLKIVAAKMLLVDRSMAEKHYLYDDIAVR 61
Query: 80 SSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDS 139
+ + SLIK+++S PV V+E ++ R G T+ K++ P +IR S
Sbjct: 62 HGEAVWKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTE---PKLAIPGTIRGDFSYHS 118
Query: 140 -----EK-----NCVHGSDSPESAQREMSFFFQEMSSDEVTRHDEL 175
EK N +H S + + A RE+ +F++ R DE
Sbjct: 119 FNYANEKGFSVYNVIHASANEDDALREIPIWFKDNEILTYKRDDEC 164
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 32.4 bits (75), Expect = 0.10
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDE--DGAKTFYAEHSSRSFFSSLI 89
++ P L D LE +L+ER L E + A+ F+ + +
Sbjct: 334 AELLLPWHLEQEGLDTEDGPYLEKVVPLLKERAKTLKELAELARFFFEDFPE-YDEDAAK 392
Query: 90 KYMTSG--PVLAMVLEKENAITDW---------RALIGPTDAKKAKISHPHSIR-AMCG 136
K++ VL +LEK A+ +W +A+ K K+ P +R A+ G
Sbjct: 393 KHLKEVAREVLEALLEKLEALEEWTAEAIEAAIKAVAEELGLKGGKLFMP--LRVALTG 449
>gnl|CDD|240293 PTZ00149, PTZ00149, hypoxanthine phosphoribosyltransferase;
Provisional.
Length = 241
Score = 30.5 bits (69), Expect = 0.38
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 44 YTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH--------SSRSFFSSLIKYM 92
Y + + K++L +G ++++RV +L D + + E SR FFS+L+ Y+
Sbjct: 49 YKNYLTKILLPNG--LIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYL 103
>gnl|CDD|218399 pfam05046, Img2, Mitochondrial large subunit ribosomal protein
(Img2). This family of proteins have been identified
as part of the mitochondrial large ribosomal subunit in
yeast.
Length = 85
Score = 26.8 bits (60), Expect = 2.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 42 GNYTDEIKKVILESGF 57
G++ +EIKK +L GF
Sbjct: 70 GDHVEEIKKFLLSKGF 85
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase;
Validated.
Length = 476
Score = 28.1 bits (63), Expect = 2.6
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 22 SNGSVEKEKTLAMIKPDGL---SGNYTDEIKKVILE---------SGFSILRERV 64
N E + +I P G SG+ TDE+KK IL SGF IL E++
Sbjct: 28 ENNIKEIKDLDGLIIPGGSLVESGSLTDELKKEILNFDGYIIGICSGFQILSEKI 82
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 27.7 bits (62), Expect = 3.4
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 9 FILACISSPCRSLSNGSVEK-EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRE 62
F++ IS L + E K + KP G I+K GFS++RE
Sbjct: 109 FLVGKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVRE 163
>gnl|CDD|107179 PHA02414, PHA02414, hypothetical protein.
Length = 111
Score = 26.4 bits (58), Expect = 4.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 42 GNYTDEIKKVILESGFSILRERVVRLDEDGA 72
G TD+ LE + LR+ VV LD+D A
Sbjct: 23 GELTDKGDNKELEVAVAELRDIVVSLDKDVA 53
>gnl|CDD|234061 TIGR02923, AhaC, ATP synthase A1, C subunit. The A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The C subunit is part
of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which
is the site of ATP generation and is coupled to the
membrane-embedded proton translocating A0 complex.
Length = 343
Score = 26.6 bits (59), Expect = 7.1
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 35/118 (29%)
Query: 30 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRL----DEDGA-----KTFYAEHS 80
KTL +K GLS DEI + G+ + E++ L D T Y E
Sbjct: 212 KTLLRLKAAGLS---PDEIMPYTIPGGYELDEEKLAPLAHIESIDEVVSALDGTKYGEDI 268
Query: 81 S--------------RSFFSSLIKYMTS---------GPVLAMVLEKENAITDWRALI 115
S R+ LIK T GPVL +L+KE + + RA+
Sbjct: 269 SEVLSEEEKSVAVFERALDEYLIKMATKLSLRYPLSVGPVLGYILKKEREVRNLRAIA 326
>gnl|CDD|107384 cd06389, PBP1_iGluR_AMPA_GluR2, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the GluR2 subunit of the AMPA receptor.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the GluR2 subunit of the AMPA
(alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
acid) receptor. The AMPA receptor is a member of the
glutamate-receptor ion channels (iGluRs) which are the
major mediators of excitatory synaptic transmission in
the central nervous system. AMPA receptors are composed
of four types of subunits (GluR1, GluR2, GluR3, and
GluR4) which combine to form a tetramer and play an
important role in mediating the rapid excitatory
synaptic current. Furthermore, this N-terminal domain of
the iGluRs has homology with LIVBP, a bacterial
periplasmic binding protein, as well as with the
structurally related glutamate-binding domain of the
G-protein-coupled metabotropic receptors (mGluRs).
Length = 370
Score = 26.5 bits (58), Expect = 7.7
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 13 CISSPCRSLSNGSVEKEKTLAMIKPDGLSGN 43
C+++P G VE E+ L ++ +GL+GN
Sbjct: 303 CLANPAVPWGQG-VEIERALKQVQVEGLTGN 332
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 26.3 bits (59), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 14 ISSPCRSLS-NGSVEKEKTL 32
I PC+ G VEKEKTL
Sbjct: 194 IKDPCKKCHGQGRVEKEKTL 213
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.375
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,819,440
Number of extensions: 804682
Number of successful extensions: 690
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 33
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)