RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 030583
(175 letters)
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 181 bits (463), Expect = 6e-60
Identities = 59/135 (43%), Positives = 83/135 (61%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL ++KPD + +I ++ GF I ++ R + A FY H R FF L
Sbjct: 4 ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQEL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++M+SGPV+A VLE E+AI R +IGPTD+++A+ P+SIRA G D KN +H SD
Sbjct: 64 VEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASD 123
Query: 149 SPESAQREMSFFFQE 163
SPESAQ E+ F F
Sbjct: 124 SPESAQYEICFIFSG 138
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 178 bits (453), Expect = 3e-58
Identities = 60/140 (42%), Positives = 86/140 (61%), Gaps = 3/140 (2%)
Query: 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRS 83
GS+ E+TL++IKPD ++ N +I +G I+ R+ L A+ FYA H+ R
Sbjct: 3 GSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERP 62
Query: 84 FFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNC 143
FF L+++M SGPV+ VLE E+AI R L+G TD KKA+ +IRA + N
Sbjct: 63 FFKDLVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAE---KGTIRADFADSIDANA 119
Query: 144 VHGSDSPESAQREMSFFFQE 163
VHGSD+PE+A+ E++FFF E
Sbjct: 120 VHGSDAPETARVEIAFFFPE 139
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 177 bits (452), Expect = 4e-58
Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T ++IKP+ ++ N I +GF I+ +++ L + A+ FYAEH + FF L
Sbjct: 3 ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++MTSGP++ VLE ENA+ R L+G T+ A ++RA +N HGSD
Sbjct: 63 VEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANAL---AGTLRADYADSLTENGTHGSD 119
Query: 149 SPESAQREMSFFFQE 163
S ESA RE+++FF E
Sbjct: 120 SVESAAREIAYFFGE 134
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A
{Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R
3pj9_A
Length = 144
Score = 177 bits (451), Expect = 5e-58
Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL++IKPDGL +I E G + R+ L + A+ FYA H +R FF L
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++M SGPV+ MVLE ENA+ R ++G T+ +A +IR +KN VHGSD
Sbjct: 63 VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAA---EGTIRKDFATSIDKNTVHGSD 119
Query: 149 SPESAQREMSFFFQE 163
S E+A+ E+++FF+E
Sbjct: 120 SLENAKIEIAYFFRE 134
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 175 bits (446), Expect = 3e-57
Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRS 83
G E+T MIKPD + I + E G + + V + +T Y+ SS
Sbjct: 1 GPGSMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMP 60
Query: 84 FFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNC 143
FFS +++ M SG VLAMV ++A++ R LIG T+ + A +IR G+ + KN
Sbjct: 61 FFSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAAS---VGTIRGDYGVSTGKNI 117
Query: 144 VHGSDSPESAQREMSFFFQE 163
+HGSD E+A++E+ + +
Sbjct: 118 IHGSDCVENAEKEIKLWIGD 137
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 173 bits (440), Expect = 2e-56
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPDG+ EI GF I +++++ ++ A+ YAEH + FF L
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
++++TSGPV+AMVLE + + R ++G T K A P +IR ++N +HGS
Sbjct: 62 VRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDAL---PGTIRGDFATTIDENVIHGSA 118
Query: 149 SPESAQREMSFFFQE 163
+ E AQRE++ FF+
Sbjct: 119 TLEDAQREIALFFRP 133
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 173 bits (440), Expect = 3e-56
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRS 83
GS+ +E+T M+KPDG+ EI GF ++ + ++ + Y EH++R
Sbjct: 3 GSMARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARP 62
Query: 84 FFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNC 143
FF+ L K+++SGPV AMV E N ++ R ++G T ++ P +IR G+D +N
Sbjct: 63 FFAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESA---PGTIRGDFGIDVGRNI 119
Query: 144 VHGSDSPESAQREMSFFFQE 163
+HGS + + A RE++ +F+
Sbjct: 120 IHGSANLDDAAREIALWFKP 139
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 172 bits (439), Expect = 4e-56
Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87
KE+T M+KPDG+ N E+ K G + +++ + +DGA YAE FF
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
L+ TSGPV AMV E NA R ++G T+ A P +IR G+ + +N +HGS
Sbjct: 62 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAA---PGTIRGDFGVSAGRNAIHGS 118
Query: 148 DSPESAQREMSFFFQE 163
DS SA +E+ FF
Sbjct: 119 DSAGSAAKEIGAFFGG 134
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 172 bits (438), Expect = 6e-56
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 21 LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80
+S V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH
Sbjct: 1 MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHK 60
Query: 81 SRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSE 140
R FF L+ ++TSGPV+AMV E + + R +IG T+ + P SIR G+D
Sbjct: 61 ERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVG 117
Query: 141 KNCVHGSDSPESAQREMSFFFQE 163
+N + GSDS ESA RE++ +F+
Sbjct: 118 RNIIGGSDSVESANREIALWFKP 140
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 172 bits (438), Expect = 6e-56
Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
EKT M+KPDG+ + EI + GF ++ +++++ + A YAEH + FF L
Sbjct: 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGEL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ ++TSGPV AMV + E + R ++G T +A P +IR G+ KN +HGSD
Sbjct: 62 VDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA---PGTIRGDFGVTVAKNIIHGSD 118
Query: 149 SPESAQREMSFFFQE 163
S ESA+RE+ FF+E
Sbjct: 119 SLESAEREIGIFFKE 133
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 173 bits (440), Expect = 6e-56
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI GF ++ +V+ + A+ Y + R FF+ L
Sbjct: 33 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGL 92
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++SGPV+AMV E E IT R LIG TD +K+ P +IR + +N +HGSD
Sbjct: 93 CDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSA---PGTIRGDLAVVVGRNIIHGSD 149
Query: 149 SPESAQREMSFFFQE 163
PE+A+ E+ +F+
Sbjct: 150 GPETAKDEIKLWFKP 164
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 172 bits (438), Expect = 7e-56
Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL +KPDG+ ++ + GF+++ ++++ E Y + + F+ +L
Sbjct: 25 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPAL 84
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
I+YM+SGPV+AMV E N + RA+IG TD+ +A P +IR + +N +H SD
Sbjct: 85 IRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAA---PGTIRGDFSVHISRNVIHASD 141
Query: 149 SPESAQREMSFFFQE 163
S E AQRE+ +FQ
Sbjct: 142 SVEGAQREIQLWFQS 156
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein
family; HET: ADP; 2.22A {Staphylococcus aureus subsp}
PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 172 bits (438), Expect = 7e-56
Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPD + N E+ I G ++ +++++ + A+T Y EH + F++ L
Sbjct: 2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
I ++TS PV AMV+E E+A+ R +IG T+ +A P SIR GL +N +HGSD
Sbjct: 62 ISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS---PGSIRGDLGLTVGRNIIHGSD 118
Query: 149 SPESAQREMSFFFQE 163
S ESA+RE++ +F E
Sbjct: 119 SLESAEREINLWFNE 133
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 171 bits (437), Expect = 8e-56
Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E++ MIKPDG+ +I + GF + + + ++ A+ YA+ S + FF L
Sbjct: 3 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
++Y+ SGPV+AMV E ++ + R +IG T +A P +IRA ++ +N +HGSD
Sbjct: 63 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA---PGTIRADYAVEVGRNVIHGSD 119
Query: 149 SPESAQREMSFFFQE 163
S ++ ++E++ +F E
Sbjct: 120 SVDNGKKEIALWFPE 134
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 171 bits (437), Expect = 8e-56
Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T M+KPDG+ EI + GF ++ ++ + ++ A+ Y + S++SFF +L
Sbjct: 6 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNL 65
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
I+Y+TSGPV+ M E + R LIG TD +A+ P +IR + + +N VHGSD
Sbjct: 66 IEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVHGSD 122
Query: 149 SPESAQREMSFFFQE 163
SPE+ +RE+ +F+E
Sbjct: 123 SPENGKREIGLWFKE 137
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A*
4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Length = 161
Score = 172 bits (437), Expect = 1e-55
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T +KPDG+ N EI K G+ ++ ++++ E+ AK Y + +S+ F+S L
Sbjct: 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 71
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ Y +SGP++ MV E + R L+G T+ + P +IR +D +N HGSD
Sbjct: 72 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSL---PGTIRGDFAVDVGRNVCHGSD 128
Query: 149 SPESAQREMSFFFQE 163
S ESA+RE++F+F+
Sbjct: 129 SVESAKREIAFWFKA 143
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Length = 149
Score = 171 bits (436), Expect = 1e-55
Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPDG+ E+ + GF++ +++ ++ A+ Y + SS+SFFS L
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ Y+ SGPV+AM+ E +N + R +IG T+ ++ P +IR +D +N +HGSD
Sbjct: 62 VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE---PGTIRGDFAIDIGRNVIHGSD 118
Query: 149 SPESAQREMSFFFQE 163
S ESA++E++ +F +
Sbjct: 119 SVESARKEIALWFPD 133
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis,
transferase, struc genomics, structural genomics
consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP:
d.58.6.1
Length = 169
Score = 171 bits (436), Expect = 2e-55
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 9 FILACISSPCRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLD 68
+L ++ + G+ E+ T +KPDG+ EI + GF ++ ++V+
Sbjct: 4 LVLTIFANLFPAACTGAHER--TFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQAS 61
Query: 69 EDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHP 128
E+ + YAE R F+ L+KYM SGPV+AMV + + + RALIG T+ A P
Sbjct: 62 EELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP---P 118
Query: 129 HSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQE 163
+IR ++ KN +HGSDS ESA+RE++ +F+
Sbjct: 119 GTIRGDFCIEVGKNLIHGSDSVESARREIALWFRA 153
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium falciparum}
SCOP: d.58.6.1
Length = 157
Score = 170 bits (433), Expect = 3e-55
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
EK+ MIKPDG+ I K + G+ ++ +++ E+ K Y E S + FF +L
Sbjct: 10 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 69
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ Y++ GPV+AMV E + + R LIG T+ + +IR L+ KN +HGSD
Sbjct: 70 VAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSN---TGTIRGDFCLEVSKNVIHGSD 126
Query: 149 SPESAQREMSFFFQE 163
S SA +E++ +F+
Sbjct: 127 SVASANKEINIWFKA 141
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 169 bits (431), Expect = 4e-55
Identities = 55/135 (40%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL +IKPDG+ EI I G +I ++ + + A YAEH + FF SL
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
++++TSGPV+A ++E AI R L G TD +A + P +IR L+++ N VHGSD
Sbjct: 63 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQA--AAPGTIRGDFALETQFNLVHGSD 120
Query: 149 SPESAQREMSFFFQE 163
S ESAQRE++ +F
Sbjct: 121 SAESAQREIALWFPG 135
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23
GEN, hexamer, activator, oncogene, ATP-binding, cell
cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens}
SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A
1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A*
1ndl_A*
Length = 151
Score = 170 bits (432), Expect = 5e-55
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + +R E+ K Y + R FF L
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N +HGSD
Sbjct: 64 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 120
Query: 149 SPESAQREMSFFFQE 163
S +SA++E+S +F+
Sbjct: 121 SVKSAEKEISLWFKP 135
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase
nucleotide binding, ATP-binding, magnesium,
metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga
mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A*
3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A*
2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A*
3gpa_A* ...
Length = 146
Score = 169 bits (431), Expect = 5e-55
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRER-VVRLDEDGAKTFYAEHSSRSFFSS 87
++TL +IKPD + EI I + F I+ + + + + Y EHS +S+F+
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
+M SGP++++V E +AI+ R L G T+ + P +IR D +N +H S
Sbjct: 67 NCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASA---PGTIRGDLANDIRENLIHAS 123
Query: 148 DSPESAQREMSFFFQE 163
DS +SA E+S +F E
Sbjct: 124 DSEDSAVDEISIWFPE 139
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 170 bits (432), Expect = 5e-55
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T M+KPDG+ EI K G ++ + D Y EH + FF L
Sbjct: 10 ERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDL 69
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++ GPV M+ E AI R L+G T ++ +IR G+ N VH S
Sbjct: 70 CDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESA---AGTIRGDFGVVKNFNIVHASS 126
Query: 149 SPESAQREMSFFFQE 163
S E A RE + +F
Sbjct: 127 SAEDAARECALWFTP 141
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B mitochondrion;
3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 169 bits (431), Expect = 8e-55
Identities = 43/135 (31%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T +KPDG+ +I + G+ ++ ++V+ D+ + YAEH + FF +
Sbjct: 14 ERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKM 73
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ +M SGP+LA V E ++ + R ++G T+ + P +IR G+D +N HGSD
Sbjct: 74 VSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSA---PGTIRGDFGIDLGRNVCHGSD 130
Query: 149 SPESAQREMSFFFQE 163
S +SA+RE++ +F++
Sbjct: 131 SVDSAEREINLWFKK 145
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
transferase, tumor suppressor; 2.10A {Homo sapiens}
Length = 172
Score = 169 bits (430), Expect = 2e-54
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + ++ ED K Y + R FF+ L
Sbjct: 25 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGL 84
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N +HGSD
Sbjct: 85 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 141
Query: 149 SPESAQREMSFFFQE 163
S ESA++E+ +F
Sbjct: 142 SVESAEKEIGLWFHP 156
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 168 bits (428), Expect = 3e-54
Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E E+TL +IKPD + EI + G I+ +++ +D + A+ Y EH + FF
Sbjct: 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFK 65
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEK---NC 143
+LI Y+T PV+ MVLE A+ R + G TD K A P +IR GL+ N
Sbjct: 66 ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAA---PGTIRGDFGLEVSDAICNV 122
Query: 144 VHGSDSPESAQREMSFFFQE 163
+H SDS ESA+RE+S FF+
Sbjct: 123 IHASDSKESAEREISLFFKP 142
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 166 bits (423), Expect = 2e-53
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E+T M+KPDG+ +I + G ++ + +R+DE+ A YAEH + FF
Sbjct: 7 HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFD 66
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHG 146
L+ ++TSGPV AMV E +A R L+G TDA+ A P +IR G D N +HG
Sbjct: 67 GLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHNLIHG 123
Query: 147 SDSPESA--QREMSFFFQE 163
SD + +RE++ FF +
Sbjct: 124 SDHEDEGANEREIALFFDD 142
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 157 bits (399), Expect = 1e-49
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH-----SSRS 83
+KTL ++KPDG+ ++ G ++ +++ +DE AK Y S +
Sbjct: 27 QKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEA 86
Query: 84 FFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEK-- 141
++SLIK++++ PV V+E +I R L G T+ K A P +IR S K
Sbjct: 87 VWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAI---PGTIRGDFSYHSFKYS 143
Query: 142 --------NCVHGSDSPESAQREMSFFFQE 163
N +H S + A RE+ +F++
Sbjct: 144 NEKGFSIYNVIHASANEADAMREIPIWFKD 173
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 135 bits (340), Expect = 1e-40
Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 46/178 (25%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS------- 81
EKTL ++KPD ++ DEI ++G I+ ++V+ + + FY
Sbjct: 16 EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQ 75
Query: 82 --------------------------RSFFSSLIKYMTSGPVLAMVLEKENAITDWRALI 115
R +L+KYMTSGP + MVL+ A+ R L+
Sbjct: 76 KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLV 135
Query: 116 GPTDAKKAKISHPHSIRAMCGLDS----------EKNCVHGSDSPESAQREMSFFFQE 163
GPT A P +IR +DS N VH SDSP A+RE+ F+F+E
Sbjct: 136 GPTSPHSAP---PGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFRE 190
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.024
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 37/61 (60%)
Query: 47 EIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106
+KK L++ L K YA+ S+ P LA+
Sbjct: 21 ALKK--LQA----------SL-----K-LYADDSA--------------PALAI-----K 43
Query: 107 A 107
A
Sbjct: 44 A 44
Score = 29.1 bits (64), Expect = 0.47
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 25 SVEK-EKTLAMIKPD---GLSGNYTDE 47
+++K + +L + D L+ T E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 29.0 bits (66), Expect = 0.73
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 20/120 (16%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDE--DGAKTFYAEHSSRSFFS 86
E+ ++ GLS +++ + ++R R L E + A+ + E S
Sbjct: 329 ERVKPFLREAGLSWESEAYLRRAV-----ELMRPRFDTLKEFPEKARYLFTEDYPVSE-K 382
Query: 87 SLIKYMTSGPVLAMVLEKENAITDW---------RALIGPTDAKKAKISHPHSIR-AMCG 136
+ K P+L + + A +W R K +++ P +R A+ G
Sbjct: 383 AQRKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQP--LRAALTG 440
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.0
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 24/81 (29%)
Query: 10 ILACISSPCRSL-SNGSVEKEKTLAMIKPDGLS-GNYT------DEIKKVI-LESGFSIL 60
+ + L S G + + T A G S G Y D V+ +ES ++
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFA-----GHSLGEYAALASLAD----VMSIESLVEVV 1786
Query: 61 RER------VVRLDEDGAKTF 75
R V DE G +
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNY 1807
Score = 28.9 bits (64), Expect = 1.2
Identities = 34/183 (18%), Positives = 56/183 (30%), Gaps = 41/183 (22%)
Query: 15 SSPCRS--LSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGF-SILRERVVRLDEDG 71
+ R LS+GS+E ++ P + L+ F IL E D
Sbjct: 3 AYSTRPLTLSHGSLE----HVLLVPTASFFIASQ------LQEQFNKILPEPTEGFAADD 52
Query: 72 AKTFYAEHSSR--SFFSSLIKYMTSG---PVLAMVLEK-ENAI---TDWRALIG--PTDA 120
T AE + + SSL++ G VL + L + EN D AL +
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 121 KKAKISHPHSIR----AMCGLDSEKNCVHGSDSPESAQRE----MSFF---------FQE 163
+ I+ A + S + ++ F F+E
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 164 MSS 166
+
Sbjct: 173 LRD 175
>1uli_B Biphenyl dioxygenase small subunit; alpha3 BETA3 hetero hexamer,
oxidoreductase; 2.20A {Rhodococcus SP} SCOP: d.17.4.4
PDB: 1ulj_B* 3en1_B* 3eqq_B
Length = 187
Score = 28.1 bits (62), Expect = 1.3
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 38 DGLSGNYTDEIKKVILESGFSILRERVVRLDED 70
D +G D +++ E+GF + + R + +D+
Sbjct: 145 DIFAGERKDILRRTGSEAGFELAK-RTILIDQS 176
>3gzx_B Biphenyl dioxygenase subunit beta; rieskie, non-heme iron, 2Fe-2S,
aromatic hydroc catabolism, iron, iron-sulfur,
metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas
testosteroni} PDB: 3gzy_B* 2yfi_B 2xr8_B* 2xrx_B* 2xsh_B
2xso_B 2yfj_B*
Length = 186
Score = 26.9 bits (59), Expect = 2.7
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 38 DGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFF 85
D +G D ++ GF I +R + LD+ ++ S F
Sbjct: 144 DVFAGERRDVLRIADNPLGFQI-AKRTIILDQS-----TVLANNLSVF 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.375
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,632,903
Number of extensions: 149738
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 39
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)