RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 030583
(175 letters)
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 143 bits (362), Expect = 5e-45
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E+T +KPDG+ EI + GF ++ ++V+ E+ + YAE R F+
Sbjct: 3 AHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYG 62
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHG 146
L+KYM SGPV+AMV + + + RALIG T+ A P +IR ++ KN +HG
Sbjct: 63 RLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP---PGTIRGDFCIEVGKNLIHG 119
Query: 147 SDSPESAQREMSFFFQE 163
SDS ESA+RE++ +F+
Sbjct: 120 SDSVESARREIALWFRA 136
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 142 bits (358), Expect = 2e-44
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T IKPDG+ EI K + GF ++ + +R E+ K Y + R FF L
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 63
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+KYM SGPV+AMV E N + R ++G T+ +K P +IR + +N +HGSD
Sbjct: 64 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 120
Query: 149 SPESAQREMSFFFQE 163
S +SA++E+S +F+
Sbjct: 121 SVKSAEKEISLWFKP 135
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 140 bits (353), Expect = 2e-43
Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 46/178 (25%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH--------- 79
EKTL ++KPD ++ DEI ++G I+ ++V+ + + FY
Sbjct: 3 EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQ 62
Query: 80 ------------------------SSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALI 115
R +L+KYMTSGP + MVL+ A+ R L+
Sbjct: 63 KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLV 122
Query: 116 GPTDAKKAKISHPHSIRAMCGLDS----------EKNCVHGSDSPESAQREMSFFFQE 163
GPT A P +IR +DS N VH SDSP A+RE+ F+F+E
Sbjct: 123 GPTSPHSAP---PGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFRE 177
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 134 bits (339), Expect = 9e-42
Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL +IKPDG+ EI I G +I ++ + + A YAEH + FF SL
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
++++TSGPV+A ++E AI R L G TD +A P +IR L+++ N VHGSD
Sbjct: 62 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAA--APGTIRGDFALETQFNLVHGSD 119
Query: 149 SPESAQREMSFFF 161
S ESAQRE++ +F
Sbjct: 120 SAESAQREIALWF 132
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 134 bits (339), Expect = 1e-41
Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL++IKPDGL +I E G + R+ L + A+ FYA H +R FF L
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+++M SGPV+ MVLE ENA+ R ++G T+ +A +IR +KN VHGSD
Sbjct: 63 VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHGSD 119
Query: 149 SPESAQREMSFFFQE 163
S E+A+ E+++FF+E
Sbjct: 120 SLENAKIEIAYFFRE 134
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 134 bits (338), Expect = 2e-41
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 3/146 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
EK+ MIKPDG+ I K + G+ ++ +++ E+ K Y E S + FF +L
Sbjct: 2 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ Y++ GPV+AMV E + + R LIG T+ + +IR L+ KN +HGSD
Sbjct: 62 VAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSN---TGTIRGDFCLEVSKNVIHGSD 118
Query: 149 SPESAQREMSFFFQEMSSDEVTRHDE 174
S SA +E++ +F+ + H +
Sbjct: 119 SVASANKEINIWFKAEELTQWKHHMK 144
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 133 bits (336), Expect = 3e-41
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPDG+ EI GF I +++++ ++ A+ YAEH + FF L
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
++++TSGPV+AMVLE + + R ++G T K A P +IR ++N +HGS
Sbjct: 62 VRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDAL---PGTIRGDFATTIDENVIHGSA 118
Query: 149 SPESAQREMSFFFQE 163
+ E AQRE++ FF+
Sbjct: 119 TLEDAQREIALFFRP 133
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 133 bits (336), Expect = 3e-41
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
+E+TL +KPDG+ ++ + GF+++ ++++ E Y + + F+
Sbjct: 4 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYP 63
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHG 146
+LI+YM+SGPV+AMV E N + RA+IG TD+ +A P +IR + +N +H
Sbjct: 64 ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAA---PGTIRGDFSVHISRNVIHA 120
Query: 147 SDSPESAQREMSFFFQE 163
SDS E AQRE+ +FQ
Sbjct: 121 SDSVEGAQREIQLWFQS 137
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 132 bits (334), Expect = 7e-41
Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
Query: 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFF 85
V KE+T +KPDG++ EI + GF ++ + + +D A++ YAEH R FF
Sbjct: 1 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFF 60
Query: 86 SSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVH 145
L+ ++TSGPV+AMV E + + R +IG T+ + P SIR G+D +N +
Sbjct: 61 GGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLAS---APGSIRGDFGVDVGRNIIA 117
Query: 146 GSDSPESAQREMSFFFQE 163
GSDS ESA RE++ +F+
Sbjct: 118 GSDSVESANREIALWFKP 135
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 132 bits (332), Expect = 2e-40
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E E+T IKPDG+ EI GF ++ +V+ + A+ Y + R FF+
Sbjct: 2 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFN 61
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHG 146
L +++SGPV+AMV E E IT R LIG TD +K+ P +IR + +N +HG
Sbjct: 62 GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSA---PGTIRGDLAVVVGRNIIHG 118
Query: 147 SDSPESAQREMSFFFQE 163
SD PE+A+ E+ +F+
Sbjct: 119 SDGPETAKDEIKLWFKP 135
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 130 bits (328), Expect = 6e-40
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 5/148 (3%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T M+KPDG+ +I + G ++ + +R+DE+ A YAEH + FF L
Sbjct: 3 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ ++TSGPV AMV E +A R L+G TDA+ A P +IR G D N +HGSD
Sbjct: 63 VSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHNLIHGSD 119
Query: 149 SPESA--QREMSFFFQEMSSDEVTRHDE 174
+ +RE++ FF + + R
Sbjct: 120 HEDEGANEREIALFFDDDELVDWDRDAS 147
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 130 bits (328), Expect = 7e-40
Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87
KE+T M+KPDG+ N E+ K G + +++ + +DGA YAE FF
Sbjct: 1 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 60
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGS 147
L+ TSGPV AMV E NA R ++G T+ A P +IR G+ + +N +HGS
Sbjct: 61 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAA---PGTIRGDFGVSAGRNAIHGS 117
Query: 148 DSPESAQREMSFFFQE 163
DS SA +E+ FF
Sbjct: 118 DSAGSAAKEIGAFFGG 133
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 130 bits (327), Expect = 1e-39
Identities = 50/137 (36%), Positives = 73/137 (53%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E E+TL +IKPD + EI + G I+ +++ +D + A+ Y EH + FF
Sbjct: 1 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFK 60
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHG 146
+LI Y+T PV+ MVLE A+ R + G TD K A + D+ N +H
Sbjct: 61 ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHA 120
Query: 147 SDSPESAQREMSFFFQE 163
SDS ESA+RE+S FF+
Sbjct: 121 SDSKESAEREISLFFKP 137
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 129 bits (325), Expect = 2e-39
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
+ E+T M+KPDG+ EI + GF ++ ++ + ++ A+ Y + S++SFF
Sbjct: 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFP 63
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHG 146
+LI+Y+TSGPV+ M E + R LIG TD +A+ P +IR + + +N VHG
Sbjct: 64 NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVHG 120
Query: 147 SDSPESAQREMSFFFQE 163
SDSPE+ +RE+ +F+E
Sbjct: 121 SDSPENGKREIGLWFKE 137
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 122 bits (308), Expect = 7e-37
Identities = 48/135 (35%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T MIKPDG+ E+ + GF++ +++ ++ A+ Y + SS+SFFS L
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+ Y+ SGPV+AM+ E +N + R +IG T+ + P +IR +D +N +HGSD
Sbjct: 62 VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAAS---EPGTIRGDFAIDIGRNVIHGSD 118
Query: 149 SPESAQREMSFFFQE 163
S ESA++E++ +F +
Sbjct: 119 SVESARKEIALWFPD 133
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 119 bits (298), Expect = 1e-35
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 30 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDG-AKTFYAEHSSRSFFSSL 88
+TL +IKPD + EI I + F I+ + + Y EHS +S+F+
Sbjct: 2 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDN 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHSIRAMCGLDSEKNCVHGSD 148
+M SGP++++V E +AI+ R L G P +IR D +N +H SD
Sbjct: 62 CDFMVSGPIISIVYEGTDAISKIRRLQGNI-------LTPGTIRGDLANDIRENLIHASD 114
Query: 149 SPESAQREMSFFF 161
S +SA E+S +F
Sbjct: 115 SEDSAVDEISIWF 127
>d1ulib_ d.17.4.4 (B:) Biphenyl dioxygenase small subunit BphA2
{Rhodococcus sp. (strain RHA1) [TaxId: 101510]}
Length = 177
Score = 27.1 bits (59), Expect = 1.1
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 38 DGLSGNYTDEIKKVILESGFSILRERVVRLDED 70
D +G D +++ E+GF + +R + +D+
Sbjct: 135 DIFAGERKDILRRTGSEAGFEL-AKRTILIDQS 166
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular
stomatitis indiana virus [TaxId: 11277]}
Length = 65
Score = 25.4 bits (55), Expect = 1.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVI 52
S E KTL + P+GLSG + I
Sbjct: 9 SDEHGKTLRLTLPEGLSGEQKSQWMLTI 36
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB),
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 25.3 bits (55), Expect = 3.6
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 127 HPHSIRAMCGLDSEKNCVHGSDSPESAQREMSFFFQEMSSDEVTRHD 173
H HS+ K+C G + + ++M F + VT+
Sbjct: 70 HAHSL-------VGKHCEDGVCTVTAGPKDMVVGFANLGILHVTKKK 109
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 25.1 bits (53), Expect = 6.0
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 26 VEKEKTLAMIKPDGLSGNYT---DEIKKVI---LESGFSILRERVVRLDEDGAKTFYAEH 79
V++ ++ D G+ +EI+K + ++ SI+ ++V + E
Sbjct: 388 VKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD-SIVHKKVQEMKEMSRNAVVDGG 446
Query: 80 SSRSFFSSLIKYMT 93
SS LI +T
Sbjct: 447 SSLISVGKLIDDIT 460
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.375
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 628,653
Number of extensions: 26790
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 23
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)