Query 030586
Match_columns 175
No_of_seqs 111 out of 421
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 15:58:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08718 GLTP: Glycolipid tran 100.0 5.4E-51 1.2E-55 317.5 13.4 142 29-170 1-148 (149)
2 KOG3221 Glycolipid transfer pr 100.0 1.1E-44 2.4E-49 288.9 13.1 144 25-169 12-159 (199)
3 KOG4189 Uncharacterized conser 100.0 3.1E-44 6.7E-49 285.9 15.0 171 3-173 3-177 (209)
4 PF00036 EF-hand_1: EF hand; 52.0 14 0.00031 20.5 2.0 28 13-43 2-29 (29)
5 PF09409 PUB: PUB domain; Int 48.7 32 0.00069 23.7 3.8 40 104-143 6-48 (87)
6 PF13496 DUF4120: Domain of un 48.5 5.3 0.00011 28.6 -0.2 13 134-146 81-93 (95)
7 PF04711 ApoA-II: Apolipoprote 33.7 1.6E+02 0.0035 20.4 5.6 54 10-63 15-70 (76)
8 PF09373 PMBR: Pseudomurein-bi 32.7 61 0.0013 18.5 2.7 25 28-52 2-26 (33)
9 PHA02759 virus coat protein VP 29.5 87 0.0019 25.6 3.9 56 5-60 64-119 (245)
10 PF13959 DUF4217: Domain of un 28.7 36 0.00078 22.5 1.4 39 113-152 4-43 (65)
11 PF02899 Phage_int_SAM_1: Phag 26.6 71 0.0015 20.8 2.6 35 111-148 49-83 (84)
12 PF04424 DUF544: Protein of un 25.7 19 0.00041 26.9 -0.4 13 138-150 87-99 (121)
13 KOG0403 Neoplastic transformat 24.9 78 0.0017 29.6 3.2 32 124-155 64-95 (645)
14 PF05002 SGS: SGS domain ; In 24.3 1E+02 0.0022 21.7 3.1 27 111-137 26-52 (82)
15 PF13405 EF-hand_6: EF-hand do 23.2 1.1E+02 0.0023 16.6 2.5 26 13-41 2-27 (31)
16 PF06070 Herpes_UL32: Herpesvi 22.8 89 0.0019 31.0 3.3 51 101-167 5-56 (839)
17 PF14788 EF-hand_10: EF hand; 22.7 1.2E+02 0.0026 19.4 2.9 29 13-44 23-51 (51)
18 smart00054 EFh EF-hand, calciu 20.1 1.1E+02 0.0024 14.5 2.1 26 14-42 3-28 (29)
No 1
>PF08718 GLTP: Glycolipid transfer protein (GLTP); InterPro: IPR014830 Glycolipid transfer protein (GLTP) is a cytosolic protein that catalyses the intermembrane transfer of glycolipids such as glycosphingolipids, glyceroglycolipids, and possibly glucosylceramides, but not of phospholipids. The GLTP protein consists of a single domain with a multi-helical structure consisting of two layers of orthogonally packed helices [, ]. The GLTP domain is also found in trans-Golgi network proteins involved in Golgi-to-cell-surface membrane traffic [].; GO: 0017089 glycolipid transporter activity, 0051861 glycolipid binding, 0046836 glycolipid transport, 0005737 cytoplasm; PDB: 2BV7_A 1TFJ_A 1WBE_A 3KV0_A 3RWV_B 2EVD_A 2EUK_A 3RZN_A 2EVL_A 3S0K_A ....
Probab=100.00 E-value=5.4e-51 Score=317.46 Aligned_cols=142 Identities=32% Similarity=0.626 Sum_probs=130.5
Q ss_pred CCCChHHHHHHHhHHHHHHHhhchhhHHHHHhHHHhHHHHHH-----cchhchhHHHHHHHHHhcCccccCCcchhHHHH
Q 030586 29 ADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAE-----ASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLR 103 (175)
Q Consensus 29 ~~i~~~~fl~a~~~l~~~~d~lG~vf~~v~~Dv~~kI~~l~~-----~~~~~~tl~~mv~~E~~~~~~~~~~s~~~~LLw 103 (175)
++|+|.+||+||++|++|||.||++|+||++||.+||++|++ +|++|.||++||++|++.|..++++||+++|||
T Consensus 1 n~i~~~~fl~a~~~l~~~~~~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~s~~LLw 80 (149)
T PF08718_consen 1 NDIDTEPFLEACRELVKFFDKLGTVFSFVKSDVQGNIKKLRKAYQEEDPEKYKTLESMVDYEVENGTHKKKGSGSRTLLW 80 (149)
T ss_dssp SEEBHHHHHHHHTTSHHHHCCSSGGGHHHHHHHHHHHHHHHHHH-HHSTTTTSBHHHHHHHHHHHHGGGTSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCChhhhccHHHHHHHHHHHhcccccccHHHHHHH
Confidence 579999999999999999999999999999999999999865 367899999999999999998888899999999
Q ss_pred HHhHHHHHHHHHHHHHhcCCC-CchhHHHHHHHhhhcccchhHHHHHHHHHhhhCCCHHHHHHHhccC
Q 030586 104 VKRGLDMVRVLFEQILAAEGN-SLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALPTRAQLLRKLNED 170 (175)
Q Consensus 104 L~RaL~Fi~~~l~~l~~~~~~-~l~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~~ 170 (175)
|||||+|+..||+++.+++++ +++.+|++||++||+|||||+||++|++||+++|+|++|+++|+++
T Consensus 81 L~RaL~Fi~~~l~~l~~~~~~~~~~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~~ 148 (149)
T PF08718_consen 81 LHRALEFIVAFLENLLESPDDEKLSDAAREAYDKTLAPYHGWIVRKAFKLALKALPSRSDFLKKLGGN 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHTS--BTBHHHHHHHHHHHHTGGGB-HHHHHHHHHHHHT--BHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC
Confidence 999999999999999998765 4999999999999999999999999999999999999999999875
No 2
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=288.92 Aligned_cols=144 Identities=23% Similarity=0.456 Sum_probs=136.9
Q ss_pred ccCCCCCChHHHHHHHhHHHHHHHhhchhhHHHHHhHHHhHHHHHH----cchhchhHHHHHHHHHhcCccccCCcchhH
Q 030586 25 NSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAE----ASKSILTLQSVIDRDIEGNCVRKAGSHTRN 100 (175)
Q Consensus 25 ~~~~~~i~~~~fl~a~~~l~~~~d~lG~vf~~v~~Dv~~kI~~l~~----~~~~~~tl~~mv~~E~~~~~~~~~~s~~~~ 100 (175)
.+++++|+|.+||+||.+|++|+|+||++|+||++||+|||+++.+ ++++++|+|.+|..|++..... ++|||++
T Consensus 12 l~~d~~i~T~~FL~ac~~i~pvid~lG~~ftpVk~Di~gNI~kv~~~y~~d~~k~~~Lq~~i~~eie~~~a~-~~sat~a 90 (199)
T KOG3221|consen 12 LPDDGKIETGPFLEACKHIVPVIDKLGAVFTPVKSDISGNITKVKKVYDTDKEKFKYLQKIVKVEIETDIAE-KVSATLA 90 (199)
T ss_pred CCcccCCccHHHHHHHhhhhhHHHHhhhhhHhHHHHhhccHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcc-cchhhHH
Confidence 5689999999999999999999999999999999999999999865 5889999999999999987777 7899999
Q ss_pred HHHHHhHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhhcccchhHHHHHHHHHhhhCCCHHHHHHHhcc
Q 030586 101 LLRVKRGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALPTRAQLLRKLNE 169 (175)
Q Consensus 101 LLwL~RaL~Fi~~~l~~l~~~~~~~l~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~ 169 (175)
||||+|+|+|+..||++|+.+.+..+.+++.+||+.||+|||||++|++|++|++++|+|++|++.++-
T Consensus 91 LLWLkRgldF~~~~l~~l~~~~~~~l~~av~daY~kTLK~~HGwI~q~~FkvaLklvP~r~~Fl~als~ 159 (199)
T KOG3221|consen 91 LLWLKRGLDFTLAFLQELVNGESDCLIQAVADAYEKTLKKYHGWIVQSTFKVALKLVPDRKTFLKALSA 159 (199)
T ss_pred HHHHHhHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCcHHHHHHHHhc
Confidence 999999999999999999998877799999999999999999999999999999999999999999973
No 3
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.1e-44 Score=285.91 Aligned_cols=171 Identities=44% Similarity=0.662 Sum_probs=152.8
Q ss_pred CCCCCCchHHHHHHHHHHHhhhccCCCCCChHHHHHHHhHHHHHHHhhchhhHHHHHhHHHhHHHHHHc-chhchhHHHH
Q 030586 3 GTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEA-SKSILTLQSV 81 (175)
Q Consensus 3 ~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~fl~a~~~l~~~~d~lG~vf~~v~~Dv~~kI~~l~~~-~~~~~tl~~m 81 (175)
+.+.-.++.++.+.|+-+..++.+++++|++.+|+.||+++++||.+||++|+||.+|+..||+.|.+. .+...|+..|
T Consensus 3 ~~~~~~~~~~i~~~~~~i~~~v~~e~~eV~L~~f~~a~e~v~~~f~~lG~iF~Fve~Dv~aKid~L~~l~ssd~et~rti 82 (209)
T KOG4189|consen 3 CMEQLGPLPKILQAFKTIEKSVIEEDNEVDLDQFLLAYEEVCKFFGCLGTIFSFVEKDVRAKIDDLVELRSSDPETYRTI 82 (209)
T ss_pred chhhccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 445567889999999999988888888999999999999999999999999999999999999999774 3446677777
Q ss_pred HHHHHhcCccccCC--cchhHHHHHHhHHHHHHHHHHHHHhcC-CCCchhHHHHHHHhhhcccchhHHHHHHHHHhhhCC
Q 030586 82 IDRDIEGNCVRKAG--SHTRNLLRVKRGLDMVRVLFEQILAAE-GNSLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALP 158 (175)
Q Consensus 82 v~~E~~~~~~~~~~--s~~~~LLwL~RaL~Fi~~~l~~l~~~~-~~~l~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P 158 (175)
++.+++....++.+ ||+|+||+|+|||+|++.||..+..++ +++++++|++||++||+|||+|+||+++++|||++|
T Consensus 83 ld~~~e~~~~~~~G~~Sgtr~Llrl~R~LefV~efl~~i~as~nD~s~~diakesYd~~lakhHsW~IRtAV~~amYtLP 162 (209)
T KOG4189|consen 83 LDLDTEESEVGTIGNQSGTRNLLRLNRALEFVIEFLDQIFASTNDESLKDIAKESYDKTLAKHHSWAIRTAVAAAMYTLP 162 (209)
T ss_pred HHHHHHHhHhcccCccccchHHHHHHhhHHHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhccccHHHHHHHHHHHHhCC
Confidence 77777766655555 999999999999999999999999885 689999999999999999999999999999999999
Q ss_pred CHHHHHHHhccCCCC
Q 030586 159 TRAQLLRKLNEDGYS 173 (175)
Q Consensus 159 ~R~~fl~~l~~~~~~ 173 (175)
+|.+|+..++++.++
T Consensus 163 TR~~lL~~Lk~d~~~ 177 (209)
T KOG4189|consen 163 TRPELLCRLKEDMDA 177 (209)
T ss_pred CcHHHHHHHHhHHHH
Confidence 999999999976543
No 4
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=51.99 E-value=14 Score=20.48 Aligned_cols=28 Identities=14% Similarity=0.443 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhccCCCCCChHHHHHHHhHH
Q 030586 13 ISESFKELAATVNSQAADVELAAFSRACSYV 43 (175)
Q Consensus 13 ~~~~f~~~~~~~~~~~~~i~~~~fl~a~~~l 43 (175)
+...|+..- ...+|.|+.++|+.+++.+
T Consensus 2 ~~~~F~~~D---~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFD---KDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHS---TTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHC---CCCCCcCCHHHHHHHHHhC
Confidence 456677653 3568889999999988753
No 5
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=48.75 E-value=32 Score=23.72 Aligned_cols=40 Identities=15% Similarity=0.407 Sum_probs=32.0
Q ss_pred HHhHHHHHHHHHHHHHhcCC-CCch--hHHHHHHHhhhcccch
Q 030586 104 VKRGLDMVRVLFEQILAAEG-NSLK--DPASKAYTQVFAPHHG 143 (175)
Q Consensus 104 L~RaL~Fi~~~l~~l~~~~~-~~l~--~~~~~AY~~tL~~yH~ 143 (175)
..++++.+...+.+++..|+ ++.+ .....++.+.+.++||
T Consensus 6 ~~~al~~L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g 48 (87)
T PF09409_consen 6 FQKALETLEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPG 48 (87)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTT
T ss_pred HHHHHHHHHHHHHHHccCCCcccceEeecCcchHHHHhcCChh
Confidence 46789999999999999884 3433 3466889999999998
No 6
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=48.47 E-value=5.3 Score=28.56 Aligned_cols=13 Identities=38% Similarity=1.221 Sum_probs=10.5
Q ss_pred HHhhhcccchhHH
Q 030586 134 YTQVFAPHHGWAI 146 (175)
Q Consensus 134 Y~~tL~~yH~w~v 146 (175)
+..+|.|+|||.+
T Consensus 81 fav~~~pfhgw~i 93 (95)
T PF13496_consen 81 FAVMLGPFHGWSI 93 (95)
T ss_pred eEEEecCcccccc
Confidence 4467899999976
No 7
>PF04711 ApoA-II: Apolipoprotein A-II (ApoA-II); InterPro: IPR006801 Apolipoprotein A-II (ApoA-II) is the second major apolipoprotein of high density lipoprotein in human plasma. Mature ApoA-II is present as a dimer of two 77-amino acid chains joined by a disulphide bridge []. ApoA-II regulates many steps in HDL metabolism, and its role in coronary heart disease is unclear []. In bovine serum, the ApoA-II homologue is present in almost free form. Bovine ApoA-II shows antimicrobial activity against Escherichia coli and yeasts in phosphate buffered saline (PBS) [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1L6L_W 2OU1_E.
Probab=33.65 E-value=1.6e+02 Score=20.36 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHhhhccCCCCCChHH-HHHHHhHHHHHHHhhch-hhHHHHHhHHH
Q 030586 10 LTKISESFKELAATVNSQAADVELAA-FSRACSYVSPLFGCLGI-AFKFAEMDYVA 63 (175)
Q Consensus 10 l~~~~~~f~~~~~~~~~~~~~i~~~~-fl~a~~~l~~~~d~lG~-vf~~v~~Dv~~ 63 (175)
+..|++-++.+...|.+++=.-.... |-+.-+.++|+..+.|+ .+.|.++=|.-
T Consensus 15 ~qt~TdYgKDL~Ekvk~pElqsQakaYfektqeQltPlvkKagtdl~nflS~~v~~ 70 (76)
T PF04711_consen 15 FQTVTDYGKDLVEKVKGPELQSQAKAYFEKTQEQLTPLVKKAGTDLMNFLSSFVEL 70 (76)
T ss_dssp HHHHHHHHHHHHHHHHSHHTSSTCHHHHHHHHHHHHHHHHGGHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhcc
Confidence 44566667776655433322223344 55566789999999998 99998877643
No 8
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=32.69 E-value=61 Score=18.50 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=21.6
Q ss_pred CCCCChHHHHHHHhHHHHHHHhhch
Q 030586 28 AADVELAAFSRACSYVSPLFGCLGI 52 (175)
Q Consensus 28 ~~~i~~~~fl~a~~~l~~~~d~lG~ 52 (175)
++.|...+|++++..+..|++.=|.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngR 26 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGR 26 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCC
Confidence 4678899999999999999987765
No 9
>PHA02759 virus coat protein VP2; Provisional
Probab=29.47 E-value=87 Score=25.57 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=40.4
Q ss_pred CCCCchHHHHHHHHHHHhhhccCCCCCChHHHHHHHhHHHHHHHhhchhhHHHHHh
Q 030586 5 DNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMD 60 (175)
Q Consensus 5 ~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~fl~a~~~l~~~~d~lG~vf~~v~~D 60 (175)
|+++-+++....|-....+-.+++..+--.-=+-+|+-+.||||.+..+|..+..-
T Consensus 64 eegriiek~l~lflg~~~iw~sdnsa~aq~~a~iayeiv~p~f~ai~nv~gvi~~g 119 (245)
T PHA02759 64 EEGRIIEKALALFLGLLAIWASDNSAAAQAFALIAYEIVKPFFDAINNVFGVIGAG 119 (245)
T ss_pred HhhhHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45577888888998887654555555554445667888889999988888776554
No 10
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=28.66 E-value=36 Score=22.46 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHhhhcccchh-HHHHHHHH
Q 030586 113 VLFEQILAAEGNSLKDPASKAYTQVFAPHHGW-AIRKAVAA 152 (175)
Q Consensus 113 ~~l~~l~~~~~~~l~~~~~~AY~~tL~~yH~w-~vr~~~~~ 152 (175)
.-++.++.. +..+...|++||..-++-|+.- -.|.+|++
T Consensus 4 ~~l~~~~~~-d~~l~~lA~~Af~SyvraY~~~~~~k~iF~~ 43 (65)
T PF13959_consen 4 QKLEKLVAK-DRELKELAQKAFVSYVRAYASHKELKDIFNV 43 (65)
T ss_pred HHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhhhhhhCCc
Confidence 345666554 5779999999999999999887 66776654
No 11
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=26.58 E-value=71 Score=20.84 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhhhcccchhHHHH
Q 030586 111 VRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRK 148 (175)
Q Consensus 111 i~~~l~~l~~~~~~~l~~~~~~AY~~tL~~yH~w~vr~ 148 (175)
+..|+..+.... ++......|-.+|+.|+.|+.++
T Consensus 49 v~~f~~~~~~~~---~s~~T~~~~~~alr~f~~~l~~~ 83 (84)
T PF02899_consen 49 VRDFLEYLAKEG---LSPSTINRRLSALRAFFRFLYRE 83 (84)
T ss_dssp HHHHHHHHHCTT-----HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccC---CCHHHHHHHHHHHHHHHHHHHHc
Confidence 345555554322 66667777888899999998874
No 12
>PF04424 DUF544: Protein of unknown function (DUF544) ; InterPro: IPR007518 This is a eukaryotic protein of unknown function.
Probab=25.72 E-value=19 Score=26.85 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=9.8
Q ss_pred hcccchhHHHHHH
Q 030586 138 FAPHHGWAIRKAV 150 (175)
Q Consensus 138 L~~yH~w~vr~~~ 150 (175)
+.-||||++-.--
T Consensus 87 I~LvHGWl~dp~~ 99 (121)
T PF04424_consen 87 IPLVHGWLVDPQD 99 (121)
T ss_pred CCceeeeccCCCC
Confidence 6779999986433
No 13
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=24.87 E-value=78 Score=29.65 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=27.2
Q ss_pred CCchhHHHHHHHhhhcccchhHHHHHHHHHhh
Q 030586 124 NSLKDPASKAYTQVFAPHHGWAIRKAVAAGMY 155 (175)
Q Consensus 124 ~~l~~~~~~AY~~tL~~yH~w~vr~~~~~a~~ 155 (175)
.+...++.+--+--.+-||+++|++.+++||-
T Consensus 64 gdv~vaa~dl~elg~seyhpyfvkrlvsmamd 95 (645)
T KOG0403|consen 64 GDVVVAASDLKELGSSEYHPYFVKRLVSMAMD 95 (645)
T ss_pred CCchhhHHHHHHhccccccHHHHHHHHHHHhh
Confidence 45667777777788999999999999999985
No 14
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=24.30 E-value=1e+02 Score=21.66 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhh
Q 030586 111 VRVLFEQILAAEGNSLKDPASKAYTQV 137 (175)
Q Consensus 111 i~~~l~~l~~~~~~~l~~~~~~AY~~t 137 (175)
+..||+.|+.+.+++++.+..+||.++
T Consensus 26 lm~lfkkiY~~gDDe~KRam~KSf~ES 52 (82)
T PF05002_consen 26 LMNLFKKIYDNGDDEMKRAMMKSFTES 52 (82)
T ss_dssp HHHHHHHHHTTS-SCHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 668999999988889998888888654
No 15
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=23.20 E-value=1.1e+02 Score=16.55 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhccCCCCCChHHHHHHHh
Q 030586 13 ISESFKELAATVNSQAADVELAAFSRACS 41 (175)
Q Consensus 13 ~~~~f~~~~~~~~~~~~~i~~~~fl~a~~ 41 (175)
+...|+.+. ...++.|+..+|..+.+
T Consensus 2 l~~~F~~~D---~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFD---KDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH----TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHC---CCCCCcCcHHHHHHHHH
Confidence 556777764 35688899999988776
No 16
>PF06070 Herpes_UL32: Herpesvirus large structural phosphoprotein UL32; InterPro: IPR010340 The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins [].; GO: 0005198 structural molecule activity
Probab=22.79 E-value=89 Score=30.96 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=36.8
Q ss_pred HHHH-HhHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhhcccchhHHHHHHHHHhhhCCCHHHHHHHh
Q 030586 101 LLRV-KRGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALPTRAQLLRKL 167 (175)
Q Consensus 101 LLwL-~RaL~Fi~~~l~~l~~~~~~~l~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l 167 (175)
++|| +|....+..||.+|..-++.+|. .|+|++++. .=+.++.|..++..|
T Consensus 5 FigL~rr~v~~L~~FL~~L~~~~~VDL~-------------~HpkVl~kC---g~~~L~rrt~lyN~L 56 (839)
T PF06070_consen 5 FIGLPRRNVVRLTKFLKNLSSRPDVDLE-------------EHPKVLRKC---GGKFLHRRTTLYNEL 56 (839)
T ss_pred cccCCHHHHHHHHHHHHhcccCCCCChh-------------hCcHHHHhc---CCCcchHHHHHHHHH
Confidence 4566 67899999999999877766654 588888876 555666666665544
No 17
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=22.68 E-value=1.2e+02 Score=19.43 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhccCCCCCChHHHHHHHhHHH
Q 030586 13 ISESFKELAATVNSQAADVELAAFSRACSYVS 44 (175)
Q Consensus 13 ~~~~f~~~~~~~~~~~~~i~~~~fl~a~~~l~ 44 (175)
....|+.|. .+.+|.++-++|.+-|+.++
T Consensus 23 A~~LFq~~D---~s~~g~Le~~Ef~~Fy~~LT 51 (51)
T PF14788_consen 23 ARQLFQECD---KSQSGRLEGEEFEEFYKRLT 51 (51)
T ss_dssp HHHHHHHH----SSSSSEBEHHHHHHHHHHHS
T ss_pred HHHHHHHhc---ccCCCCccHHHHHHHHHHhC
Confidence 456788886 46889999999999988763
No 18
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=20.13 E-value=1.1e+02 Score=14.46 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhccCCCCCChHHHHHHHhH
Q 030586 14 SESFKELAATVNSQAADVELAAFSRACSY 42 (175)
Q Consensus 14 ~~~f~~~~~~~~~~~~~i~~~~fl~a~~~ 42 (175)
...|+.+. ...++.|+..+|....+.
T Consensus 3 ~~~f~~~d---~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFD---KDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHC---CCCCCcEeHHHHHHHHHh
Confidence 34555542 234567888888877654
Done!