Query 030588
Match_columns 175
No_of_seqs 108 out of 454
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 16:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 3.9E-52 8.4E-57 344.4 12.0 138 16-155 12-151 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 4.1E-49 9E-54 312.3 8.8 139 18-157 1-151 (151)
3 PF04970 LRAT: Lecithin retino 95.4 0.0074 1.6E-07 45.7 1.5 36 86-124 83-119 (125)
4 PF05608 DUF778: Protein of un 94.8 0.083 1.8E-06 41.8 5.7 40 90-129 75-114 (136)
5 PF09601 DUF2459: Protein of u 79.3 2.9 6.3E-05 34.0 4.0 43 88-131 97-162 (173)
6 PF13387 DUF4105: Domain of un 66.2 8 0.00017 30.9 3.6 54 82-135 98-155 (176)
7 KOG3150 Uncharacterized conser 63.5 17 0.00037 29.9 4.9 56 76-131 74-132 (182)
8 TIGR02117 chp_urease_rgn conse 53.6 17 0.00038 30.4 3.6 41 88-129 127-191 (208)
9 PF08405 Calici_PP_N: Viral po 51.8 17 0.00037 32.9 3.4 76 40-129 21-99 (358)
10 PF04046 PSP: PSP; InterPro: 38.9 29 0.00064 22.8 2.2 28 120-147 5-34 (48)
11 cd02998 PDI_a_ERp38 PDIa famil 36.9 17 0.00038 24.9 0.9 47 92-138 34-81 (105)
12 PF13964 Kelch_6: Kelch motif 36.8 30 0.00064 21.4 2.0 20 41-60 3-22 (50)
13 PF03153 TFIIA: Transcription 36.1 29 0.00063 30.8 2.5 42 13-58 326-369 (375)
14 PF11931 DUF3449: Domain of un 36.0 12 0.00026 31.3 0.0 21 130-151 85-105 (196)
15 COG0801 FolK 7,8-dihydro-6-hyd 35.5 76 0.0016 25.7 4.5 56 63-118 38-105 (160)
16 smart00581 PSP proline-rich do 33.9 39 0.00084 22.8 2.2 27 121-147 10-38 (54)
17 PF07646 Kelch_2: Kelch motif; 33.4 40 0.00086 20.8 2.1 17 42-58 4-20 (49)
18 PF15643 Tox-PL-2: Papain fold 30.1 43 0.00094 25.3 2.1 45 91-142 2-46 (100)
19 cd01781 AF6_RA_repeat2 Ubiquit 30.0 1.3E+02 0.0029 22.6 4.8 53 64-116 2-55 (100)
20 COG3662 Uncharacterized protei 29.6 87 0.0019 27.9 4.2 61 85-155 180-241 (300)
21 PF01288 HPPK: 7,8-dihydro-6-h 27.4 93 0.002 23.7 3.7 42 64-105 35-77 (127)
22 smart00460 TGc Transglutaminas 26.9 39 0.00084 21.7 1.3 24 115-138 7-30 (68)
23 PF13854 Kelch_5: Kelch motif 26.9 62 0.0013 19.5 2.1 18 42-59 7-24 (42)
24 smart00392 PROF Profilin. Bind 25.9 1.4E+02 0.003 22.6 4.4 63 40-131 58-127 (129)
25 PF12419 DUF3670: SNF2 Helicas 25.4 75 0.0016 24.6 2.8 25 76-100 71-95 (141)
26 PRK13907 rnhA ribonuclease H; 24.7 86 0.0019 23.1 3.0 29 101-129 97-125 (128)
27 TIGR01514 NAPRTase nicotinate 23.3 41 0.00089 31.0 1.2 43 92-134 46-89 (394)
28 PRK13848 conjugal transfer pro 23.2 61 0.0013 24.3 1.8 25 84-108 39-63 (98)
29 KOG3967 Uncharacterized conser 23.0 40 0.00088 29.4 1.0 58 48-118 14-71 (297)
30 PF01344 Kelch_1: Kelch motif; 22.2 72 0.0016 19.0 1.8 19 42-60 4-22 (47)
31 PLN02362 hexokinase 22.1 38 0.00082 32.2 0.7 49 93-142 36-90 (509)
32 PF07820 TraC: TraC-like prote 22.1 63 0.0014 24.1 1.7 25 84-108 38-62 (92)
33 PF13456 RVT_3: Reverse transc 22.0 1.5E+02 0.0033 19.4 3.6 32 96-127 52-83 (87)
34 TIGR01498 folK 2-amino-4-hydro 21.5 1.6E+02 0.0034 22.6 3.9 43 63-105 34-77 (127)
35 PF10870 DUF2729: Protein of u 21.3 40 0.00086 22.5 0.5 14 106-119 33-46 (53)
36 PRK14092 2-amino-4-hydroxy-6-h 20.5 1.7E+02 0.0038 23.5 4.1 40 63-102 44-83 (163)
37 PF11022 DUF2611: Protein of u 20.3 29 0.00062 24.6 -0.4 22 128-149 7-28 (71)
38 PF03792 PBC: PBC domain; Int 20.2 49 0.0011 27.7 0.9 59 88-147 103-167 (191)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.9e-52 Score=344.36 Aligned_cols=138 Identities=57% Similarity=1.161 Sum_probs=133.0
Q ss_pred CcceEEEEEeeCCCcccchhhccceeeeeceEEcCeEeeeccccCCCCCeEeeCCCCCCCCceEEEEEcccccCCHHHHH
Q 030588 16 NETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFR 95 (175)
Q Consensus 16 ~~~~V~LnVYDLs~~n~~~~~lG~Gi~HTgVeV~G~Ey~FG~~~~~~sGI~~~~P~~~p~~~~~~~i~lG~T~~~~~~~~ 95 (175)
...+|.|||||+++.|.++.++|+|||||||||||+||+||+|+.+.+|||+++|+.+|+++||++|.||.|++++++|+
T Consensus 12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~ 91 (214)
T KOG0324|consen 12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVR 91 (214)
T ss_pred cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCcccccccccchHHHHHHHHhcCCCCChHhHHHhhhc--cccCCCCccch
Q 030588 96 TFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLG--TKNSSCFHLPM 155 (175)
Q Consensus 96 ~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~~I~rla~~~--s~~~~~~l~P~ 155 (175)
+||++|+++|+|++|||+.|||||||+++|++|+||+||+||||||+++ +++ .|+ +|+
T Consensus 92 ~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~-~~~-~p~ 151 (214)
T KOG0324|consen 92 RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLC-NCL-LPM 151 (214)
T ss_pred HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHH-hhc-chh
Confidence 9999999999999999999999999999999999999999999999988 555 775 455
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=4.1e-49 Score=312.26 Aligned_cols=139 Identities=47% Similarity=0.901 Sum_probs=104.4
Q ss_pred ceEEEEEeeCCCccc------chhhccc---eeeeeceEEcCeEeeeccccCCCCCeEeeCCCC-CCCCceEEEEEcccc
Q 030588 18 TQVVLNVYDLTPVNS------YTYWFGF---GIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRS-CPGFIYRASILLGRI 87 (175)
Q Consensus 18 ~~V~LnVYDLs~~n~------~~~~lG~---Gi~HTgVeV~G~Ey~FG~~~~~~sGI~~~~P~~-~p~~~~~~~i~lG~T 87 (175)
.+|+||||||++.+. ...++|. |||||||||+|+||+||+++.+.+||+.+.|+. .+++.|+++++||+|
T Consensus 1 h~V~L~vYDL~~~~~~~~~~~~~~~lG~~~~Gi~HtgV~v~G~Ey~fg~~~~~~~GI~~~~P~~~~~~~~~~~~i~lG~T 80 (151)
T PF05903_consen 1 HPVYLNVYDLSPINNGMARQLSLMWLGLQIDGIYHTGVEVYGKEYAFGGHDDPDSGIFECPPGHTSPGGTPRESIELGET 80 (151)
T ss_dssp -EEEEEEEETT---TTHHHHHHHHHCSS-----EEEEEEETTEEEEEET-----TECEEESTT-STT--S-SEEEEEEEE
T ss_pred CeEEEEEEECccccchhHHHhhHhhhCCccCceEEEEEEEccEEEEecccccccCcceEccCcCCCCCcceEEEEeCCCc
Confidence 489999999996654 4467997 999999999999999999988889999999998 778899999999999
Q ss_pred cCCHHHHHHHHHHhhccCCCCcccccccccchHHHHHHHHhcCCCCChHhHHHhhhc--cccCCCCccchhh
Q 030588 88 NMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLG--TKNSSCFHLPMFV 157 (175)
Q Consensus 88 ~~~~~~~~~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~~I~rla~~~--s~~~~~~l~P~~~ 157 (175)
.+++++|+++|++|+++|++++||||+||||||||+||++|+|++||+||+|+|+++ +++ +.+++||++
T Consensus 81 ~~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~~~p~-~~~l~p~~~ 151 (151)
T PF05903_consen 81 TLSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIALSSPF-GQMLLPMLW 151 (151)
T ss_dssp ---HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHHTSHH-HHHHCC---
T ss_pred cCCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhcccch-hhhhCcCCC
Confidence 999999999999999999999999999999999999999999999999999999944 556 667888854
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=95.45 E-value=0.0074 Score=45.70 Aligned_cols=36 Identities=33% Similarity=0.587 Sum_probs=17.7
Q ss_pred cccCCHHHHHHHHHHh-hccCCCCcccccccccchHHHHH
Q 030588 86 RINMPPSEFRTFIECS-ASEYHGDTYNLISKNCNHFTDDI 124 (175)
Q Consensus 86 ~T~~~~~~~~~~l~~l-~~~f~~~~Y~Ll~~NCNhFs~~l 124 (175)
....+.+++.+-.+++ .+++ .|||+.+||-||+.-.
T Consensus 83 ~~~~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEhFa~~c 119 (125)
T PF04970_consen 83 YKPFPPEEIVERAESRLGKEF---EYNLLFNNCEHFATWC 119 (125)
T ss_dssp S--S-HHHHHHHHHHTTT-EE---SS---HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCC---ccCCCcCCHHHHHHHH
Confidence 3344444444433332 3333 8999999999998754
No 4
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=94.78 E-value=0.083 Score=41.79 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHhhccCCCCcccccccccchHHHHHHHHhc
Q 030588 90 PPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLT 129 (175)
Q Consensus 90 ~~~~~~~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~ 129 (175)
+.+..++.|++-.++|....|+|+..||.+|--.....|.
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~ 114 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMR 114 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhcc
Confidence 4567778888888999999999999999999988888874
No 5
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=79.34 E-value=2.9 Score=34.01 Aligned_cols=43 Identities=16% Similarity=0.393 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHhhccCCCC-----------------------cccccccccchHHHHHHHHhcCC
Q 030588 88 NMPPSEFRTFIECSASEYHGD-----------------------TYNLISKNCNHFTDDIAWRLTGK 131 (175)
Q Consensus 88 ~~~~~~~~~~l~~l~~~f~~~-----------------------~Y~Ll~~NCNhFs~~l~~~L~gk 131 (175)
.++++++.++++.++..|.-+ +|+|+ ++||+-+++..+...-+
T Consensus 97 ~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG~~ 162 (173)
T PF09601_consen 97 RLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAGLP 162 (173)
T ss_pred EcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcCCC
Confidence 678999999998887666543 36654 79999999988876543
No 6
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=66.22 E-value=8 Score=30.91 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=40.5
Q ss_pred EEcccccCCHHHHHHHHHHhhc----cCCCCcccccccccchHHHHHHHHhcCCCCCh
Q 030588 82 ILLGRINMPPSEFRTFIECSAS----EYHGDTYNLISKNCNHFTDDIAWRLTGKHIPG 135 (175)
Q Consensus 82 i~lG~T~~~~~~~~~~l~~l~~----~f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~ 135 (175)
|..=...+++++.+.++..|-+ .-++-.||.+..||=.-.-++.....++.+|-
T Consensus 98 v~~y~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~~ 155 (176)
T PF13387_consen 98 VWEYPLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLPL 155 (176)
T ss_pred EEEEEeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCeec
Confidence 3333457899999998877642 23556999999999999988888888765543
No 7
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.47 E-value=17 Score=29.86 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=41.6
Q ss_pred CceEEEEEcccccC---CHHHHHHHHHHhhccCCCCcccccccccchHHHHHHHHhcCC
Q 030588 76 FIYRASILLGRINM---PPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGK 131 (175)
Q Consensus 76 ~~~~~~i~lG~T~~---~~~~~~~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~gk 131 (175)
+.+.+-+.|+.+.. .+...++.+.+-+++|...+|+++--||..|-.....+|.=+
T Consensus 74 G~paRY~ql~p~~~~~~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mry~ 132 (182)
T KOG3150|consen 74 GPPARYIQLDPEKVCGPGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMRYG 132 (182)
T ss_pred CCcceeEEeChhheeCCCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhhcC
Confidence 34444455554432 346778889998999999999999999999987777777533
No 8
>TIGR02117 chp_urease_rgn conserved hypothetical protein. This conserved hypothetical protein of unknown function is found in several Proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=53.58 E-value=17 Score=30.41 Aligned_cols=41 Identities=15% Similarity=0.398 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHhhccCCCC------------------------cccccccccchHHHHHHHHhc
Q 030588 88 NMPPSEFRTFIECSASEYHGD------------------------TYNLISKNCNHFTDDIAWRLT 129 (175)
Q Consensus 88 ~~~~~~~~~~l~~l~~~f~~~------------------------~Y~Ll~~NCNhFs~~l~~~L~ 129 (175)
.++++++.++++-+++.|.-+ +||++ ++||+-+.+..+.-.
T Consensus 127 ~vs~~qy~~L~~~I~~sf~~~~~g~~~~l~~~~yg~~d~Fy~A~G~Y~l~-~TCNtWta~aL~aAG 191 (208)
T TIGR02117 127 LVSENQYNRLMDFISASFVRDAEGRVIPLPGGIYGDSDAFYAANGRYNAL-NTCNTWTAAALRSAG 191 (208)
T ss_pred EcCHHHHHHHHHHHHHhcCcCCCCCceecCCCCCCCCceeEeeeeeEEee-ccchHHHHHHHHHcC
Confidence 678899998887765333211 25544 799999998877653
No 9
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=51.84 E-value=17 Score=32.85 Aligned_cols=76 Identities=22% Similarity=0.401 Sum_probs=43.7
Q ss_pred eeeeeceEEcCeEeeeccccCC---CCCeEeeCCCCCCCCceEEEEEcccccCCHHHHHHHHHHhhccCCCCcccccccc
Q 030588 40 GIFHSGIEVHGKEYGFGAHDFP---VSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKN 116 (175)
Q Consensus 40 Gi~HTgVeV~G~Ey~FG~~~~~---~sGI~~~~P~~~p~~~~~~~i~lG~T~~~~~~~~~~l~~l~~~f~~~~Y~Ll~~N 116 (175)
-+||-||-|.+ -+.+|-|.-+ +.|-+...|-..+ =+.++.-+-.++.+++.... .+.| -|..+.+|
T Consensus 21 ~~yHYaIYi~~-G~~lgvh~p~aai~~a~i~l~~ls~~----WRvvy~P~~~~~~~~L~~l~---ge~~---PY~a~~nN 89 (358)
T PF08405_consen 21 DIYHYAIYIGK-GLVLGVHSPGAAISIATIELEPLSLW----WRVVYTPRQRLSYDQLRKLE---GEKF---PYAAFTNN 89 (358)
T ss_pred eeEEEEEEecC-CeEEeecCcchhceeeeEEEeecccc----cccccCCCCCCCHHHHHHhc---CCCC---Cchhhccc
Confidence 58999987644 5677765322 2344445554332 11222222345556643332 2444 49999999
Q ss_pred cchHHHHHHHHhc
Q 030588 117 CNHFTDDIAWRLT 129 (175)
Q Consensus 117 CNhFs~~l~~~L~ 129 (175)
|=||| |+-|.
T Consensus 90 Cy~fc---c~vl~ 99 (358)
T PF08405_consen 90 CYTFC---CWVLG 99 (358)
T ss_pred hHHHh---HhhcC
Confidence 99999 66664
No 10
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=38.90 E-value=29 Score=22.80 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=22.5
Q ss_pred HHHHHHHHhc--CCCCChHhHHHhhhcccc
Q 030588 120 FTDDIAWRLT--GKHIPGWVNRLARLGTKN 147 (175)
Q Consensus 120 Fs~~l~~~L~--gk~IP~~I~rla~~~s~~ 147 (175)
.|+++.++|. ....|.|+.++.++|-+.
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G~PP 34 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLGYPP 34 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcCCCC
Confidence 4678888885 457999999999998663
No 11
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=36.86 E-value=17 Score=24.91 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhccCCC-CcccccccccchHHHHHHHHhcCCCCChHhH
Q 030588 92 SEFRTFIECSASEYHG-DTYNLISKNCNHFTDDIAWRLTGKHIPGWVN 138 (175)
Q Consensus 92 ~~~~~~l~~l~~~f~~-~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~~I~ 138 (175)
.++...++++.+++.. ..+.+..=||+....++|+.+....+|..+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 34 KNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred HhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 3455566777766663 4688889999997788999999899998654
No 12
>PF13964 Kelch_6: Kelch motif
Probab=36.85 E-value=30 Score=21.37 Aligned_cols=20 Identities=45% Similarity=0.519 Sum_probs=16.5
Q ss_pred eeeeceEEcCeEeeeccccC
Q 030588 41 IFHSGIEVHGKEYGFGAHDF 60 (175)
Q Consensus 41 i~HTgVeV~G~Ey~FG~~~~ 60 (175)
..|+.|.++|+-|.|||...
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred ccCEEEEECCEEEEECCCCC
Confidence 36888999999999998643
No 13
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=36.13 E-value=29 Score=30.79 Aligned_cols=42 Identities=36% Similarity=0.594 Sum_probs=28.8
Q ss_pred CCCCcceEEEEEeeCCC-c-ccchhhccceeeeeceEEcCeEeeeccc
Q 030588 13 DGINETQVVLNVYDLTP-V-NSYTYWFGFGIFHSGIEVHGKEYGFGAH 58 (175)
Q Consensus 13 ~~~~~~~V~LnVYDLs~-~-n~~~~~lG~Gi~HTgVeV~G~Ey~FG~~ 58 (175)
+......|.|-.||=-. . |++...|..||-| |+|++|.|...
T Consensus 326 ~~~~~~~~~~c~~~kv~r~k~~wk~~lk~g~~~----~~~~d~~f~~~ 369 (375)
T PF03153_consen 326 DDFDTDNVVLCQYDKVTRVKNKWKCTLKDGIMH----INGKDYVFQKA 369 (375)
T ss_dssp --STTS-EEEEEEEEEEEETTEEEEEEEEEEEE----ETTEEEEEEEE
T ss_pred cccCcCCEEEEEeeccccccceeEEEeeeeEEE----ECCeEEEEeee
Confidence 33356678999999543 3 4454557889999 59999999853
No 14
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=35.98 E-value=12 Score=31.34 Aligned_cols=21 Identities=43% Similarity=0.855 Sum_probs=0.0
Q ss_pred CCCCChHhHHHhhhccccCCCC
Q 030588 130 GKHIPGWVNRLARLGTKNSSCF 151 (175)
Q Consensus 130 gk~IP~~I~rla~~~s~~~~~~ 151 (175)
|||||-|+-.|.-++.-+ .|=
T Consensus 85 GkPIPyWLYKLhGL~~ey-~CE 105 (196)
T PF11931_consen 85 GKPIPYWLYKLHGLGVEY-KCE 105 (196)
T ss_dssp ----------------------
T ss_pred CCcccHHHHHHhCCCCee-eeE
Confidence 799999999999988766 553
No 15
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=35.50 E-value=76 Score=25.73 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=42.8
Q ss_pred CCeEeeCCCC-CCCCceEEEEEcccccCCHHHHHHHHHHhh--------ccCCCCccc---ccccccc
Q 030588 63 SGVFEVEPRS-CPGFIYRASILLGRINMPPSEFRTFIECSA--------SEYHGDTYN---LISKNCN 118 (175)
Q Consensus 63 sGI~~~~P~~-~p~~~~~~~i~lG~T~~~~~~~~~~l~~l~--------~~f~~~~Y~---Ll~~NCN 118 (175)
|.++.++|-. .....|--.+...+|.+++.|+-+.+.++. .+|.+.+-| |+..+|.
T Consensus 38 S~~y~t~p~G~~~Q~~FlN~v~~v~T~L~p~eLL~~l~~iE~~~gR~R~~rwgPRtlDlDIllygd~~ 105 (160)
T COG0801 38 SPIYETPPVGYEDQPDFLNAVVEVETTLSPRELLARLQAIERRLGRVRSERWGPRTLDLDILLYGDEV 105 (160)
T ss_pred ccceecCCCCCCCCcchheEEEEEeccCCHHHHHHHHHHHHHHcCccccccCCCcceeeEEEEEccee
Confidence 5677777633 335567888999999999999998887663 579999877 5777776
No 16
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=33.94 E-value=39 Score=22.78 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=21.8
Q ss_pred HHHHHHHhc--CCCCChHhHHHhhhcccc
Q 030588 121 TDDIAWRLT--GKHIPGWVNRLARLGTKN 147 (175)
Q Consensus 121 s~~l~~~L~--gk~IP~~I~rla~~~s~~ 147 (175)
|+++.++|. ....|.|+.++.++|-+.
T Consensus 10 S~~LR~ALG~~~~~pPPWl~~Mq~~G~PP 38 (54)
T smart00581 10 SDELREALGLPPGQPPPWLYRMRRLGYPP 38 (54)
T ss_pred CHHHHHHcCCCCCCCChHHHHHHHHCCCC
Confidence 678888885 356999999999998653
No 17
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=33.35 E-value=40 Score=20.83 Aligned_cols=17 Identities=41% Similarity=0.596 Sum_probs=15.3
Q ss_pred eeeceEEcCeEeeeccc
Q 030588 42 FHSGIEVHGKEYGFGAH 58 (175)
Q Consensus 42 ~HTgVeV~G~Ey~FG~~ 58 (175)
-|+.+++.++-|-|||.
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 48899999999999986
No 18
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=30.15 E-value=43 Score=25.28 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhccCCCCcccccccccchHHHHHHHHhcCCCCChHhHHHhh
Q 030588 91 PSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLAR 142 (175)
Q Consensus 91 ~~~~~~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~~I~rla~ 142 (175)
++++...+..+..+|. ---|--|++|+.++|.-++||.-+.++-.
T Consensus 2 ~~~~~Q~I~~I~~~f~-------~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 2 PAEVRQQIGKIASRFK-------IFQCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred HHHHHHHHHHhhcccC-------ceehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 4677788888887774 23599999999999999999998887755
No 19
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=30.04 E-value=1.3e+02 Score=22.55 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=37.5
Q ss_pred CeEeeCCCCCCCCceEEEEEcccccCCHHHHHHHHHHhh-ccCCCCcccccccc
Q 030588 64 GVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSA-SEYHGDTYNLISKN 116 (175)
Q Consensus 64 GI~~~~P~~~p~~~~~~~i~lG~T~~~~~~~~~~l~~l~-~~f~~~~Y~Ll~~N 116 (175)
|+..+-|+.--...+.++|.+-.++.+++-|.+.|++.. +.-.++.|-|..-+
T Consensus 2 G~LKIYg~~L~~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~ 55 (100)
T cd01781 2 GTLKIYGGSLVPTRPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVS 55 (100)
T ss_pred CeEEEcCCcccCCCCeEEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEe
Confidence 555555554322345589999999999999999998765 55567778777654
No 20
>COG3662 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.62 E-value=87 Score=27.95 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=45.4
Q ss_pred ccccCCHHHHHHHHHHhhccCCCCcccccccccchHHHHHHHHhcCCCCChHhHHHhh-hccccCCCCccch
Q 030588 85 GRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLAR-LGTKNSSCFHLPM 155 (175)
Q Consensus 85 G~T~~~~~~~~~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~~I~rla~-~~s~~~~~~l~P~ 155 (175)
+-..-++++|.++++.+.+++. |++++.++..-|..-++|.-+.+..- +-.+...-+++|+
T Consensus 180 r~vP~~r~~f~~Yw~~~~~~~~----------~~~~vre~l~~l~s~~~P~~l~rp~~~~~l~at~gllpp~ 241 (300)
T COG3662 180 RMVPPDRAAFQAYWDAMLDRLL----------IDNRVREVLLGLASLPAPPPLRRPLGRFFLWATTGLLPPW 241 (300)
T ss_pred CCCCccHHHHHHHHHHHhhccc----------cchhHHHHHHHHhcCCCCcchhhhhHHHHHHHHhccCCHH
Confidence 3446688999999999887765 78999999999998888888877544 3333334556776
No 21
>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites. Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....
Probab=27.44 E-value=93 Score=23.69 Aligned_cols=42 Identities=12% Similarity=0.300 Sum_probs=28.9
Q ss_pred CeEeeCCCCCCCC-ceEEEEEcccccCCHHHHHHHHHHhhccC
Q 030588 64 GVFEVEPRSCPGF-IYRASILLGRINMPPSEFRTFIECSASEY 105 (175)
Q Consensus 64 GI~~~~P~~~p~~-~~~~~i~lG~T~~~~~~~~~~l~~l~~~f 105 (175)
-+++++|-...+. .|.-.+..+.|.++.+++.+.+.++..++
T Consensus 35 ~~y~t~p~g~~~~~~F~N~v~~~~t~l~~~~ll~~L~~IE~~~ 77 (127)
T PF01288_consen 35 SIYETEPVGFESQPDFLNAVVVLETSLSPEELLDLLKQIERRL 77 (127)
T ss_dssp EEEEE--SSSSSS-CEEEEEEEEEESS-HHHHHHHHHHHHHHT
T ss_pred CCEEECCccCCCCcCeeeeeeeecCCCCHHHHHHHHHHHHHHh
Confidence 5566666543333 48888999999999999999998876433
No 22
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=26.92 E-value=39 Score=21.74 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.0
Q ss_pred cccchHHHHHHHHhcCCCCChHhH
Q 030588 115 KNCNHFTDDIAWRLTGKHIPGWVN 138 (175)
Q Consensus 115 ~NCNhFs~~l~~~L~gk~IP~~I~ 138 (175)
-+|.+|++.++..|-..+||.-+.
T Consensus 7 G~C~~~a~l~~~llr~~GIpar~v 30 (68)
T smart00460 7 GTCGEFAALFVALLRSLGIPARVV 30 (68)
T ss_pred eeeHHHHHHHHHHHHHCCCCeEEE
Confidence 479999999999999999998554
No 23
>PF13854 Kelch_5: Kelch motif
Probab=26.90 E-value=62 Score=19.54 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.4
Q ss_pred eeeceEEcCeEeeecccc
Q 030588 42 FHSGIEVHGKEYGFGAHD 59 (175)
Q Consensus 42 ~HTgVeV~G~Ey~FG~~~ 59 (175)
-|+.+.+.++=|-|||..
T Consensus 7 ~hs~~~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYS 24 (42)
T ss_pred ceEEEEECCEEEEEcCcc
Confidence 589999999999999854
No 24
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=25.89 E-value=1.4e+02 Score=22.62 Aligned_cols=63 Identities=19% Similarity=0.328 Sum_probs=38.4
Q ss_pred eeeeeceEEcCeEeeeccccC-------CCCCeEeeCCCCCCCCceEEEEEcccccCCHHHHHHHHHHhhccCCCCcccc
Q 030588 40 GIFHSGIEVHGKEYGFGAHDF-------PVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNL 112 (175)
Q Consensus 40 Gi~HTgVeV~G~Ey~FG~~~~-------~~sGI~~~~P~~~p~~~~~~~i~lG~T~~~~~~~~~~l~~l~~~f~~~~Y~L 112 (175)
+...+||.+.|+.|.+=..+. +..||+....+ +.+.+|..+-+ .
T Consensus 58 ~~~~~Gi~l~G~Ky~~~~~d~~~i~~kk~~~Gv~i~kT~--------~aivI~~y~e~---------------------~ 108 (129)
T smart00392 58 AVFSNGLTLGGQKYMVIRADDRSIMGKKGAGGVVIVKTK--------QALIIGMYKEG---------------------V 108 (129)
T ss_pred hhccCCeEECCeEEEEEEecCcEEEeecCCceEEEEECC--------CEEEEEECCCC---------------------C
Confidence 688899999999999854321 12344443332 34555554422 3
Q ss_pred cccccchHHHHHHHHhcCC
Q 030588 113 ISKNCNHFTDDIAWRLTGK 131 (175)
Q Consensus 113 l~~NCNhFs~~l~~~L~gk 131 (175)
-..|||...+.|+++|...
T Consensus 109 ~~g~~~~~v~~ladYL~~~ 127 (129)
T smart00392 109 QPGQANKTVEKLADYLRSS 127 (129)
T ss_pred ChHHHHHHHHHHHHHHHHc
Confidence 3457777777777777543
No 25
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=25.38 E-value=75 Score=24.60 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.5
Q ss_pred CceEEEEEcccccCCHHHHHHHHHH
Q 030588 76 FIYRASILLGRINMPPSEFRTFIEC 100 (175)
Q Consensus 76 ~~~~~~i~lG~T~~~~~~~~~~l~~ 100 (175)
..|.=++.+|...+|++||.++++.
T Consensus 71 ~~f~W~lalGd~~Ls~eEf~~L~~~ 95 (141)
T PF12419_consen 71 LDFDWELALGDEELSEEEFEQLVEQ 95 (141)
T ss_pred hcceEEEEECCEECCHHHHHHHHHc
Confidence 3688899999999999999999875
No 26
>PRK13907 rnhA ribonuclease H; Provisional
Probab=24.69 E-value=86 Score=23.06 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=23.9
Q ss_pred hhccCCCCcccccccccchHHHHHHHHhc
Q 030588 101 SASEYHGDTYNLISKNCNHFTDDIAWRLT 129 (175)
Q Consensus 101 l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~ 129 (175)
|.++|..-....+.|.||..+|++++.=.
T Consensus 97 l~~~f~~~~~~~v~r~~N~~Ad~LA~~a~ 125 (128)
T PRK13907 97 YIKSFDLFFIKWIPSSQNKVADELARKAI 125 (128)
T ss_pred HHhcCCceEEEEcCchhchhHHHHHHHHH
Confidence 45778888888899999999999998644
No 27
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=23.30 E-value=41 Score=30.96 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=37.5
Q ss_pred HHHHHHHHHhh-ccCCCCcccccccccchHHHHHHHHhcCCCCC
Q 030588 92 SEFRTFIECSA-SEYHGDTYNLISKNCNHFTDDIAWRLTGKHIP 134 (175)
Q Consensus 92 ~~~~~~l~~l~-~~f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP 134 (175)
+++++.|+-|. =+|+.+..+-|++||+.|.+++..+|-+-+++
T Consensus 46 ~gl~~~i~~l~~l~ft~eel~yL~~~~~~~~~~fl~~L~~frf~ 89 (394)
T TIGR01514 46 EALREEISALGNLRFTDDEIEYLKQELPYLKSDYIDYLRNFRFH 89 (394)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHhccCCCCHHHHHHHHhCCCC
Confidence 67888888886 58999999999999999999999999876664
No 28
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=23.22 E-value=61 Score=24.34 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.2
Q ss_pred cccccCCHHHHHHHHHHhhccCCCC
Q 030588 84 LGRINMPPSEFRTFIECSASEYHGD 108 (175)
Q Consensus 84 lG~T~~~~~~~~~~l~~l~~~f~~~ 108 (175)
||..+++++++...++.+..+|+..
T Consensus 39 LgeieI~d~eL~~aFeeiAaRFR~g 63 (98)
T PRK13848 39 LGEIEIEEAELQAAFEELAKRFRGG 63 (98)
T ss_pred ccccccCHHHHHHHHHHHHHHHhcC
Confidence 7888999999999999998888764
No 29
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.98 E-value=40 Score=29.40 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=32.5
Q ss_pred EcCeEeeeccccCCCCCeEeeCCCCCCCCceEEEEEcccccCCHHHHHHHHHHhhccCCCCcccccccccc
Q 030588 48 VHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCN 118 (175)
Q Consensus 48 V~G~Ey~FG~~~~~~sGI~~~~P~~~p~~~~~~~i~lG~T~~~~~~~~~~l~~l~~~f~~~~Y~Ll~~NCN 118 (175)
.-|-+|+|.+ .|+.+..-..-| +.|.-+.++-+-+ .--+.|.+.-+---|.||.+|||
T Consensus 14 L~~fgYaFde-----kGvLr~iktgeP-F~fn~~eD~~enq-------k~ye~Lge~i~~~VYeLLEk~c~ 71 (297)
T KOG3967|consen 14 LEGFGYAFDE-----KGVLRHIKTGEP-FVFNYREDLHENQ-------KRYEALGEIITKYVYELLEKDCN 71 (297)
T ss_pred HhhcceeecC-----cceeeeccCCCC-eEEecHHHHHHhH-------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567899976 388876543333 4443332222211 11233444444557999999998
No 30
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=22.25 E-value=72 Score=19.01 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=16.1
Q ss_pred eeeceEEcCeEeeeccccC
Q 030588 42 FHSGIEVHGKEYGFGAHDF 60 (175)
Q Consensus 42 ~HTgVeV~G~Ey~FG~~~~ 60 (175)
.|+.+.++++=|-+||...
T Consensus 4 ~~~~~~~~~~iyv~GG~~~ 22 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDG 22 (47)
T ss_dssp SEEEEEETTEEEEEEEBES
T ss_pred cCEEEEECCEEEEEeeecc
Confidence 5888999999999998653
No 31
>PLN02362 hexokinase
Probab=22.13 E-value=38 Score=32.17 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=41.7
Q ss_pred HHHHHHHHhhccCCCCcccccccccchHHHHHHHHhcC------CCCChHhHHHhh
Q 030588 93 EFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTG------KHIPGWVNRLAR 142 (175)
Q Consensus 93 ~~~~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~g------k~IP~~I~rla~ 142 (175)
.....++++.+.|..+... |.+-.+||..++-.-|.+ +-+|.||.++|.
T Consensus 36 ~~~~~l~~~~~~f~~~~~~-L~~v~~~f~~em~~GL~~~~~s~l~MlPTyv~~lPt 90 (509)
T PLN02362 36 RVVGVLKELEEACETPVGR-LRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDDLPT 90 (509)
T ss_pred HHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHhhccCCCCCCceecCccCCCCC
Confidence 4667788889999988777 688999999999999975 569999988887
No 32
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=22.06 E-value=63 Score=24.07 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.4
Q ss_pred cccccCCHHHHHHHHHHhhccCCCC
Q 030588 84 LGRINMPPSEFRTFIECSASEYHGD 108 (175)
Q Consensus 84 lG~T~~~~~~~~~~l~~l~~~f~~~ 108 (175)
||..+++.+|+..+++.+..+|+..
T Consensus 38 L~eieI~d~eL~~~FeeIa~RFrk~ 62 (92)
T PF07820_consen 38 LGEIEISDAELQAAFEEIAARFRKG 62 (92)
T ss_pred cccccCCHHHHHHHHHHHHHHHhcc
Confidence 7888999999999999999988875
No 33
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=21.97 E-value=1.5e+02 Score=19.40 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=23.9
Q ss_pred HHHHHhhccCCCCcccccccccchHHHHHHHH
Q 030588 96 TFIECSASEYHGDTYNLISKNCNHFTDDIAWR 127 (175)
Q Consensus 96 ~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~ 127 (175)
+-+..+.+.|..-++..+.|..|-.++++++.
T Consensus 52 ~~i~~~~~~~~~~~~~~i~r~~N~~A~~LA~~ 83 (87)
T PF13456_consen 52 QDIRSLLDRFWNVSVSHIPREQNKVADALAKF 83 (87)
T ss_dssp HHHHHHHCCCSCEEEEE--GGGSHHHHHHHHH
T ss_pred hhhhhhhccccceEEEEEChHHhHHHHHHHHH
Confidence 33445557788889999999999999999874
No 34
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=21.50 E-value=1.6e+02 Score=22.61 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=30.4
Q ss_pred CCeEeeCCCCCC-CCceEEEEEcccccCCHHHHHHHHHHhhccC
Q 030588 63 SGVFEVEPRSCP-GFIYRASILLGRINMPPSEFRTFIECSASEY 105 (175)
Q Consensus 63 sGI~~~~P~~~p-~~~~~~~i~lG~T~~~~~~~~~~l~~l~~~f 105 (175)
|-+++++|-..+ ...|.-.+..+.|.+++.++.+.+.++..++
T Consensus 34 S~~y~T~p~g~~~q~~FlN~v~~~~T~l~p~~Ll~~l~~IE~~~ 77 (127)
T TIGR01498 34 SSIYETPPWGFTDQPDFLNAVVEVETTLAPRELLALLQAIEAEL 77 (127)
T ss_pred ccCEEEcCCCCCCCchhheEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 356666664333 3346677888899999999999998875433
No 35
>PF10870 DUF2729: Protein of unknown function (DUF2729); InterPro: IPR022621 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf72; it is a family of uncharacterised viral proteins. This Alphabaculovirus family of proteins has no known function.
Probab=21.30 E-value=40 Score=22.49 Aligned_cols=14 Identities=50% Similarity=0.933 Sum_probs=12.3
Q ss_pred CCCcccccccccch
Q 030588 106 HGDTYNLISKNCNH 119 (175)
Q Consensus 106 ~~~~Y~Ll~~NCNh 119 (175)
.|++|--+++|||-
T Consensus 33 ~gdrY~q~NNNCNF 46 (53)
T PF10870_consen 33 GGDRYYQINNNCNF 46 (53)
T ss_pred CCceEEEEcCCccE
Confidence 58899999999983
No 36
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=20.46 E-value=1.7e+02 Score=23.51 Aligned_cols=40 Identities=10% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCeEeeCCCCCCCCceEEEEEcccccCCHHHHHHHHHHhh
Q 030588 63 SGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSA 102 (175)
Q Consensus 63 sGI~~~~P~~~p~~~~~~~i~lG~T~~~~~~~~~~l~~l~ 102 (175)
|-+++++|-..+...|.-.+..+.|.++.+++.+.+..+.
T Consensus 44 S~~y~T~P~g~~q~dFlN~vv~~~T~l~p~~Ll~~L~~IE 83 (163)
T PRK14092 44 SRLYRTAPVDAQGPDFVNAVAALDTTLAPLDLLDLLQALE 83 (163)
T ss_pred CCCEEeCCCCCCCCchhEEEEEEEeCCCHHHHHHHHHHHH
Confidence 4566666654344457788889999999999999998775
No 37
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=20.31 E-value=29 Score=24.60 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.8
Q ss_pred hcCCCCChHhHHHhhhccccCC
Q 030588 128 LTGKHIPGWVNRLARLGTKNSS 149 (175)
Q Consensus 128 L~gk~IP~~I~rla~~~s~~~~ 149 (175)
+.|+.+|++++-++.+|+.+.+
T Consensus 7 I~Gr~V~~H~LAi~tLg~~~~~ 28 (71)
T PF11022_consen 7 IFGRQVQSHYLAIATLGTVFGG 28 (71)
T ss_pred ecccccccchhHHHHHHHHHHH
Confidence 4699999999999999988733
No 38
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=20.21 E-value=49 Score=27.72 Aligned_cols=59 Identities=20% Similarity=0.383 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHhhccCCCCcccccccccchHHHHHHHHhcC----CC-CChHhHHHhh-hcccc
Q 030588 88 NMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTG----KH-IPGWVNRLAR-LGTKN 147 (175)
Q Consensus 88 ~~~~~~~~~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~g----k~-IP~~I~rla~-~~s~~ 147 (175)
.++..+.+.-|..++..|..+. .-...+|++||+.+...|-- .+ -|.-|.++-. +...|
T Consensus 103 ~~d~~dYr~kL~~ir~~y~~el-~kye~ac~eF~~hV~~lLreQs~~RPIs~keiE~m~~~i~~Kf 167 (191)
T PF03792_consen 103 SIDHSDYRAKLSQIRQIYHSEL-EKYEQACNEFTEHVMNLLREQSEFRPISPKEIERMVNIIHRKF 167 (191)
T ss_pred ccchHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence 4556788888888887776652 22348999999999998842 33 4567777555 44444
Done!