Query 030588
Match_columns 175
No_of_seqs 108 out of 454
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 02:12:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 3.4E-53 1.2E-57 340.9 10.1 139 17-163 6-153 (168)
2 2lkt_A Retinoic acid receptor 94.4 0.014 4.9E-07 43.2 1.7 16 109-124 105-120 (125)
3 4dot_A Group XVI phospholipase 94.4 0.017 5.9E-07 44.6 2.1 18 108-125 104-121 (140)
4 4dpz_X HRAS-like suppressor 2; 94.4 0.014 5E-07 44.8 1.7 18 108-125 104-121 (137)
5 1rpq_W Peptide E131; receptor- 33.0 11 0.00036 20.6 0.2 13 116-128 2-14 (26)
6 1nvp_C Transcription initiatio 28.3 35 0.0012 23.5 2.4 39 16-58 30-70 (76)
7 2wj8_A Nucleoprotein; RNA bind 26.1 39 0.0013 29.4 2.7 32 92-125 285-325 (391)
8 1wxa_A Afadin, AF-6 protein; R 25.7 1.5E+02 0.0051 21.3 5.6 52 63-114 9-61 (116)
9 3qbc_A 2-amino-4-hydroxy-6-hyd 23.3 1.6E+02 0.0056 22.5 5.7 49 63-111 41-98 (161)
10 1cbk_A Protein (7,8-dihydro-6- 22.1 1.9E+02 0.0064 22.1 5.8 49 63-111 38-95 (160)
11 1f9y_A HPPK, protein (6-hydrox 20.2 1.5E+02 0.0052 22.6 4.9 49 63-111 37-95 (158)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=3.4e-53 Score=340.89 Aligned_cols=139 Identities=28% Similarity=0.472 Sum_probs=128.6
Q ss_pred cceEEEEEeeCCCccc-ch--hhccc---eeeeeceEEcCeEeeeccccCCCCCeEeeCCCCCCCCceEEEEEcccccCC
Q 030588 17 ETQVVLNVYDLTPVNS-YT--YWFGF---GIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMP 90 (175)
Q Consensus 17 ~~~V~LnVYDLs~~n~-~~--~~lG~---Gi~HTgVeV~G~Ey~FG~~~~~~sGI~~~~P~~~p~~~~~~~i~lG~T~~~ 90 (175)
+.+|+||||||+++++ .+ .++|+ |||||||||||+||+||+ +||+.+.|+.++.++|+++|+||+|++|
T Consensus 6 ~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~~ 80 (168)
T 2wp7_A 6 LYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVT 80 (168)
T ss_dssp CEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECCC
T ss_pred CcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccCC
Confidence 4899999999999743 22 47897 999999999999999996 4999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc-CCCCcccccccccchHHHHHHHHhcCCCCChHhHHHhh--hccccCCCCccchhhhhhhhc
Q 030588 91 PSEFRTFIECSASE-YHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLAR--LGTKNSSCFHLPMFVIQQVIT 163 (175)
Q Consensus 91 ~~~~~~~l~~l~~~-f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~~I~rla~--~~s~~~~~~l~P~~~i~~~~~ 163 (175)
+++|+++|++|+++ |++++||||+|||||||||+|++|+||+||+||||+|+ +++++ +.+|+|| |+++..
T Consensus 81 ~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~-G~~l~~~--l~~~~~ 153 (168)
T 2wp7_A 81 EEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPF-GQALRPF--LDSIQI 153 (168)
T ss_dssp HHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHH-HHHHHHH--HTTCCC
T ss_pred HHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcH-HHHHHHH--HHHHhh
Confidence 99999999999998 99999999999999999999999999999999999999 77888 8899999 677654
No 2
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=94.42 E-value=0.014 Score=43.17 Aligned_cols=16 Identities=38% Similarity=1.092 Sum_probs=14.1
Q ss_pred cccccccccchHHHHH
Q 030588 109 TYNLISKNCNHFTDDI 124 (175)
Q Consensus 109 ~Y~Ll~~NCNhFs~~l 124 (175)
.||||.+||=||+..+
T Consensus 105 ~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 105 KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred CcCCCccCHHHHHhhh
Confidence 6999999999998654
No 3
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=94.38 E-value=0.017 Score=44.57 Aligned_cols=18 Identities=39% Similarity=0.879 Sum_probs=15.8
Q ss_pred CcccccccccchHHHHHH
Q 030588 108 DTYNLISKNCNHFTDDIA 125 (175)
Q Consensus 108 ~~Y~Ll~~NCNhFs~~l~ 125 (175)
..|+||.+||-||+..+.
T Consensus 104 ~~Y~ll~nNCEHFvt~cr 121 (140)
T 4dot_A 104 VLYKLTSENCEHFVNELR 121 (140)
T ss_dssp CSSCCCHHHHHHHHHHHH
T ss_pred ccccccccChHHHHHHHh
Confidence 699999999999997653
No 4
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=94.37 E-value=0.014 Score=44.82 Aligned_cols=18 Identities=39% Similarity=0.831 Sum_probs=10.7
Q ss_pred CcccccccccchHHHHHH
Q 030588 108 DTYNLISKNCNHFTDDIA 125 (175)
Q Consensus 108 ~~Y~Ll~~NCNhFs~~l~ 125 (175)
..|+|+.+||.||+..+.
T Consensus 104 ~~Y~ll~nNCEHFvt~cr 121 (137)
T 4dpz_X 104 LPYSLTSDNCEHFVNHLR 121 (137)
T ss_dssp EC-----CHHHHHHHHHH
T ss_pred cccCcCccChHHHHHHHh
Confidence 489999999999998653
No 5
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=32.96 E-value=11 Score=20.64 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=9.2
Q ss_pred ccchHHHHHHHHh
Q 030588 116 NCNHFTDDIAWRL 128 (175)
Q Consensus 116 NCNhFs~~l~~~L 128 (175)
.|.||+-++--.|
T Consensus 2 qcphfcyeldyel 14 (26)
T 1rpq_W 2 QCPHFCYELDYEL 14 (26)
T ss_dssp CCCTHHHHSSSCC
T ss_pred CCCeeeeecCccc
Confidence 4999988764444
No 6
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=28.30 E-value=35 Score=23.51 Aligned_cols=39 Identities=26% Similarity=0.526 Sum_probs=27.2
Q ss_pred CcceEEEEEeeCCCc--ccchhhccceeeeeceEEcCeEeeeccc
Q 030588 16 NETQVVLNVYDLTPV--NSYTYWFGFGIFHSGIEVHGKEYGFGAH 58 (175)
Q Consensus 16 ~~~~V~LnVYDLs~~--n~~~~~lG~Gi~HTgVeV~G~Ey~FG~~ 58 (175)
....|.|-.||=-.. |++...|..||-| |+|++|.|...
T Consensus 30 ~~~n~vlC~ydKV~R~KnkWKc~LKdGim~----ingkdy~F~ka 70 (76)
T 1nvp_C 30 DTENVVVCQYDKIHRSKNKWKFHLKDGIMN----LNGRDYIFSKA 70 (76)
T ss_dssp CCCCEEEEEEEEEEEETTEEEEEEEEEEEE----ETTEEEEEEEE
T ss_pred CCCcEEEEEEEEEeccCceEEEEEeccEEE----ECCEEEEEecc
Confidence 356788999985432 3333446679988 59999999753
No 7
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=26.05 E-value=39 Score=29.42 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhccCCCCcccccc---------cccchHHHHHH
Q 030588 92 SEFRTFIECSASEYHGDTYNLIS---------KNCNHFTDDIA 125 (175)
Q Consensus 92 ~~~~~~l~~l~~~f~~~~Y~Ll~---------~NCNhFs~~l~ 125 (175)
.|+.++++++.++ ..-|||.. -||+||+.-+.
T Consensus 285 ~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVL 325 (391)
T 2wj8_A 285 VEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVL 325 (391)
T ss_dssp HHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhhee
Confidence 3556667776543 33467665 49999997654
No 8
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=25.69 E-value=1.5e+02 Score=21.27 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=37.8
Q ss_pred CCeEeeCCCCCCCCceEEEEEcccccCCHHHHHHHHHHhh-ccCCCCcccccc
Q 030588 63 SGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSA-SEYHGDTYNLIS 114 (175)
Q Consensus 63 sGI~~~~P~~~p~~~~~~~i~lG~T~~~~~~~~~~l~~l~-~~f~~~~Y~Ll~ 114 (175)
.|+..+-|+.--...+.+++.+-..+...+.|.+.|++.. +.-.++.|-|..
T Consensus 9 ~g~lkIYg~~L~~~~~Yksvlvt~~tta~~vV~eaLekygL~~~~~~~Y~Lve 61 (116)
T 1wxa_A 9 GGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIAR 61 (116)
T ss_dssp CCEEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEE
T ss_pred CeEEEEeCCcccCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEE
Confidence 4878888876433345578888888888899999999875 444556677654
No 9
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=23.27 E-value=1.6e+02 Score=22.53 Aligned_cols=49 Identities=8% Similarity=0.040 Sum_probs=35.4
Q ss_pred CCeEeeCCCCC-CCCceEEEEEcccccCCHHHHHHHHHHhh--------ccCCCCccc
Q 030588 63 SGVFEVEPRSC-PGFIYRASILLGRINMPPSEFRTFIECSA--------SEYHGDTYN 111 (175)
Q Consensus 63 sGI~~~~P~~~-p~~~~~~~i~lG~T~~~~~~~~~~l~~l~--------~~f~~~~Y~ 111 (175)
|.+++++|-.. ....|.-.+....|.+++.++.+.+.++. .+|.+.+-|
T Consensus 41 S~~yeT~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~~GR~R~~r~gpRtlD 98 (161)
T 3qbc_A 41 SPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLD 98 (161)
T ss_dssp CCCEEECCSSSSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHHHSCSCGGGCCCCCE
T ss_pred CCEEEECCCCCCCCCcceEEEEEEEeCCCHHHHHHHHHHHHHHhCCCCCCcCCCceEe
Confidence 46777777432 34467778888899999999999887764 457776655
No 10
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1
Probab=22.10 E-value=1.9e+02 Score=22.10 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=35.3
Q ss_pred CCeEeeCCCCCC-CCceEEEEEcccccCCHHHHHHHHHHhh--------ccCCCCccc
Q 030588 63 SGVFEVEPRSCP-GFIYRASILLGRINMPPSEFRTFIECSA--------SEYHGDTYN 111 (175)
Q Consensus 63 sGI~~~~P~~~p-~~~~~~~i~lG~T~~~~~~~~~~l~~l~--------~~f~~~~Y~ 111 (175)
|.+++++|-... ...|.-.+....|.+++.++.+.+.++. .+|.+.+-|
T Consensus 38 S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~~GR~r~~r~gpRtlD 95 (160)
T 1cbk_A 38 SSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIENEQGRVRLRRWGERTLD 95 (160)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHTTCCBCSTTSCBSCE
T ss_pred cccEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHHHHcCCCCCCCCCCceee
Confidence 466777774332 3457777778899999999999998774 357777655
No 11
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=20.25 E-value=1.5e+02 Score=22.56 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=34.7
Q ss_pred CCeEeeCCCC-CCCCceEEEEEcccccCCHHHHHHHHHHhh---------ccCCCCccc
Q 030588 63 SGVFEVEPRS-CPGFIYRASILLGRINMPPSEFRTFIECSA---------SEYHGDTYN 111 (175)
Q Consensus 63 sGI~~~~P~~-~p~~~~~~~i~lG~T~~~~~~~~~~l~~l~---------~~f~~~~Y~ 111 (175)
|.+++++|-. .....|.-.+....|.+++.++.+.+.++. .+|.+.+-|
T Consensus 37 S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~~GR~r~~~~~gpRtlD 95 (158)
T 1f9y_A 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLD 95 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHTTCCCCSSTTCCCSCE
T ss_pred CCeEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHHHHhCCCCCCCCCCCceEe
Confidence 4677777743 234467777788899999999999987764 346666544
Done!