Query 030591
Match_columns 175
No_of_seqs 244 out of 1164
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 02:17:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 4E-26 1.4E-30 156.1 6.6 60 14-73 2-63 (63)
2 3igm_B PF14_0633 protein; AP2 88.5 0.4 1.4E-05 33.3 3.4 23 10-32 3-27 (77)
3 3jtz_A Integrase; four strande 83.4 1.1 3.8E-05 31.3 3.6 37 24-60 37-75 (88)
4 1u3e_M HNH homing endonuclease 78.2 0.36 1.2E-05 37.3 -0.5 38 15-55 109-147 (174)
5 1z1b_A Integrase; protein-DNA 74.8 4.1 0.00014 33.0 5.1 41 16-60 14-55 (356)
6 3ju0_A Phage integrase; four s 71.8 3.2 0.00011 30.0 3.3 37 24-60 37-75 (108)
7 1x60_A Sporulation-specific N- 42.0 16 0.00055 23.8 2.4 32 27-58 37-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 38.5 31 0.0011 22.6 3.5 33 26-58 36-68 (81)
9 1b69_A Protein (integrase); in 32.6 33 0.0011 23.1 2.8 30 10-39 7-38 (69)
10 2ftc_I Mitochondrial ribosomal 31.9 68 0.0023 23.4 4.7 36 24-61 79-114 (118)
11 1kcq_A Gelsolin, brevin, ADF, 25.7 1E+02 0.0036 21.1 4.6 37 23-59 27-63 (104)
12 1svq_A Severin; actin-binding; 24.6 87 0.003 22.1 4.1 33 27-59 41-73 (114)
13 3bbo_O Ribosomal protein L16; 21.5 31 0.001 25.9 1.1 44 17-63 80-128 (135)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=4e-26 Score=156.12 Aligned_cols=60 Identities=55% Similarity=0.923 Sum_probs=57.0
Q ss_pred ceeEeEeeC-CeeEEEEecCCC-CeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 030591 14 SYRGIRCRN-SKWVSEIREPRK-STRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNFV 73 (175)
Q Consensus 14 ~yrGVr~r~-GkW~a~I~~~~k-~~ri~LGtf~t~eeAA~Ayd~aa~~~~G~~a~lNFp~s~ 73 (175)
+||||++|+ |||+|+|++|.+ |+++|||||+|+||||+|||.|+++++|..+++|||+++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 699999999 999999999975 799999999999999999999999999999999999864
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.51 E-value=0.4 Score=33.35 Aligned_cols=23 Identities=13% Similarity=0.429 Sum_probs=20.1
Q ss_pred CCCCceeEeEeeC--CeeEEEEecC
Q 030591 10 KKHPSYRGIRCRN--SKWVSEIREP 32 (175)
Q Consensus 10 ~~~s~yrGVr~r~--GkW~a~I~~~ 32 (175)
..+|+|.||++.+ +.|+|.-.+.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 5689999999988 9999999985
No 3
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=83.43 E-value=1.1 Score=31.29 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=30.6
Q ss_pred eeEEEEecCCCCeEEeccCCC--CHHHHHHHHHHHHHHh
Q 030591 24 KWVSEIREPRKSTRIWLGTYP--TPEMAAAAYDVAALAL 60 (175)
Q Consensus 24 kW~a~I~~~~k~~ri~LGtf~--t~eeAA~Ayd~aa~~~ 60 (175)
.|+-+.+..++.+++-||.|+ |.++|....+.+...+
T Consensus 37 ~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 37 HWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 699999988888899999997 5888888777766665
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=78.16 E-value=0.36 Score=37.31 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=29.1
Q ss_pred eeEeEeeC-CeeEEEEecCCCCeEEeccCCCCHHHHHHHHHH
Q 030591 15 YRGIRCRN-SKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDV 55 (175)
Q Consensus 15 yrGVr~r~-GkW~a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~ 55 (175)
++||.+.. ++|.+.|... +.++||.|.|.+||+++|..
T Consensus 109 ~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp HHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHTC
T ss_pred eeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHCc
Confidence 45665522 6798988884 46789999999999999763
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=74.75 E-value=4.1 Score=32.98 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.0
Q ss_pred eEeEeeC-CeeEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHh
Q 030591 16 RGIRCRN-SKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALAL 60 (175)
Q Consensus 16 rGVr~r~-GkW~a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~aa~~~ 60 (175)
.||++++ |.|+.++.. .|+++.+|. |..+|..........+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 4788777 999877654 667889996 8888877766554444
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=71.78 E-value=3.2 Score=30.04 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=29.8
Q ss_pred eeEEEEecCCCCeEEeccCCC--CHHHHHHHHHHHHHHh
Q 030591 24 KWVSEIREPRKSTRIWLGTYP--TPEMAAAAYDVAALAL 60 (175)
Q Consensus 24 kW~a~I~~~~k~~ri~LGtf~--t~eeAA~Ayd~aa~~~ 60 (175)
.|+-+.+..++.+++-||.|+ |..+|....+.+...+
T Consensus 37 ~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 37 YWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 699999988888899999997 5788877777666555
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=41.97 E-value=16 Score=23.80 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=22.2
Q ss_pred EEEecCCCCeEEeccCCCCHHHHHHHHHHHHH
Q 030591 27 SEIREPRKSTRIWLGTYPTPEMAAAAYDVAAL 58 (175)
Q Consensus 27 a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~aa~ 58 (175)
+.|...+.-.|+++|.|.+.++|..+-+....
T Consensus 37 ~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 37 SIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 34433233469999999999999888665443
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=38.47 E-value=31 Score=22.62 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=23.5
Q ss_pred EEEEecCCCCeEEeccCCCCHHHHHHHHHHHHH
Q 030591 26 VSEIREPRKSTRIWLGTYPTPEMAAAAYDVAAL 58 (175)
Q Consensus 26 ~a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~aa~ 58 (175)
.+.|...+.-.|+.+|-|.+.++|..+-+....
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344544334469999999999999888665544
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=32.62 E-value=33 Score=23.07 Aligned_cols=30 Identities=7% Similarity=0.168 Sum_probs=21.3
Q ss_pred CCCCceeEeEeeC-CeeEEEEecC-CCCeEEe
Q 030591 10 KKHPSYRGIRCRN-SKWVSEIREP-RKSTRIW 39 (175)
Q Consensus 10 ~~~s~yrGVr~r~-GkW~a~I~~~-~k~~ri~ 39 (175)
.+..-+.|+++|+ |+|+.++... ++.+.||
T Consensus 7 kgr~L~~GesqR~dG~Y~yry~d~~Gkr~~vY 38 (69)
T 1b69_A 7 RGRILKTGESQRKDGRYLYKYIDSFGEPQFVY 38 (69)
T ss_dssp SSSCCCTTEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCCccCCCeEEccCCcEEEEEEcCCCCEEEEE
Confidence 3346688999998 9999998875 3334443
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=31.95 E-value=68 Score=23.36 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=29.0
Q ss_pred eeEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhc
Q 030591 24 KWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALK 61 (175)
Q Consensus 24 kW~a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~aa~~~~ 61 (175)
.|+|.|.. ...-+-++...+.+.|..|...|+.+|-
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 49999986 5556667766889999999999988774
No 11
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=25.70 E-value=1e+02 Score=21.10 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=29.4
Q ss_pred CeeEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHH
Q 030591 23 SKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALA 59 (175)
Q Consensus 23 GkW~a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~aa~~ 59 (175)
..--|.|-..++.-.+|.|...+..|-..|-..|...
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3444667776677899999999999999998888654
No 12
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=24.58 E-value=87 Score=22.05 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=26.6
Q ss_pred EEEecCCCCeEEeccCCCCHHHHHHHHHHHHHH
Q 030591 27 SEIREPRKSTRIWLGTYPTPEMAAAAYDVAALA 59 (175)
Q Consensus 27 a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~aa~~ 59 (175)
|.|-..++.-.+|.|...+..|-..|-..|...
T Consensus 41 ~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 41 CFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73 (114)
T ss_dssp EEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 455565667899999999999999998887654
No 13
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=21.48 E-value=31 Score=25.92 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=33.2
Q ss_pred EeEeeCC-----eeEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcCC
Q 030591 17 GIRCRNS-----KWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGS 63 (175)
Q Consensus 17 GVr~r~G-----kW~a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~aa~~~~G~ 63 (175)
++|..+| .|+|.|.. ...-+-++. .+.+.|..|...|+.+|-+.
T Consensus 80 e~RMG~GKG~~~~wva~Vk~--G~ilfEi~g-v~~~~A~eAlr~a~~KLP~~ 128 (135)
T 3bbo_O 80 ETRMGSGKGSPEYWVAVVKP--GRILYEISG-VAENIARRAVAIAASKMPIR 128 (135)
T ss_dssp SCCSSCCCSCSSCCCCCCCT--TCEEEEECS-SCTTHHHHHHHHHHHHCSSC
T ss_pred cccccccCCCceEEEEEECC--CCEEEEEec-CCHHHHHHHHHHHHhhCCCc
Confidence 5555553 49999976 555666777 89999999999999887543
Done!