BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030594
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 20 YTVGDTSGWTQ--GFDYTSWVSGKTFKVGDVLVFNYGG-LHKVDRVSESDYNNCASSNAL 76
+ VGD++GWT +DY W S F VGD L+FNY H V +V + + +C SS+
Sbjct: 5 HKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPA 64
Query: 77 ESHDDGNTRINLKAPGTQYFICPTAGHCPGGMKLAVTV 114
S+ G I LK PGT YF+C GHC G K+ + V
Sbjct: 65 ASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 20 YTVGDTSGWTQGFDYTSWVSGKTFKVGDVLVFNYG-GLHKVDRVSESDYNNCASSNALES 78
Y VG + GWT F+ SW GK F+ GD+L+FNY +H V V++ ++ C + +
Sbjct: 3 YVVGGSGGWT--FNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60
Query: 79 HDDGNTRINLKAPGTQYFICPTAGHCPGGMKLAVTVV 115
+ G +I L G YFIC GHC GMK+AV +
Sbjct: 61 YTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 19 EYTVGDTSGWTQGFD---YTSWVSGKTFKVGDVLVFNYG-GLHKVDRVSESDYNNCASSN 74
+Y VG W + D Y +W +GKTF+VGD L F++ G+H V V++ ++NC N
Sbjct: 3 DYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKEN 62
Query: 75 ALESHDDGNTRINLKAPGTQYFICPTAGHCPGGMKLAVTVV 115
+ +I L G QY+IC HC G KL++ VV
Sbjct: 63 PISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 38 VSGKTFKVGDVLVFNY-GGLHKVDRVSESDYNNCASSNALESHDDGNTRINLKAPGTQYF 96
GK+F+ GDVLVF Y G H V V+ Y +C++ ++ G RI L G YF
Sbjct: 14 ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKL-TRGQNYF 72
Query: 97 ICPTAGHCPGGMKLAVTV 114
IC GHC GGMK+A+
Sbjct: 73 ICSFPGHCGGGMKIAINA 90
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 20 YTVGDTSGWTQGFD---YTSWVSGKTFKVGDVLVFNY-GGLHKVDRV-SESDYNNC---A 71
+ VGD +GW+ Y+ W +GKTF+VGD L FN+ H V + ++ ++ C
Sbjct: 6 HIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVN 65
Query: 72 SSNALESHDDGNTRINLKAPGTQYFICPTAGHCPGGMKLAVTVVA 116
S N +E R L G YF+C HC G KL++ VVA
Sbjct: 66 SDNDVERTSPVIER--LDELGMHYFVCTVGTHCSNGQKLSINVVA 108
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 76 LESHDDGNTRINLKAPGTQYFICPTAGHCPGGMKLAVTV 114
L + + G+ APGT +IC GH GMK +TV
Sbjct: 100 LNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTV 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,039,984
Number of Sequences: 62578
Number of extensions: 135454
Number of successful extensions: 303
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 6
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)