Query 030594
Match_columns 175
No_of_seqs 133 out of 841
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 16:06:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 1.2E-42 2.7E-47 279.2 15.4 108 8-116 11-119 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 2.2E-32 4.7E-37 197.8 3.2 81 28-108 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.6 9.9E-07 2.2E-11 66.9 10.4 88 15-115 26-119 (119)
4 TIGR02656 cyanin_plasto plasto 98.5 1.4E-06 3E-11 64.0 8.9 89 19-115 2-99 (99)
5 PF00127 Copper-bind: Copper b 98.3 2.1E-06 4.6E-11 62.8 6.8 75 39-115 17-99 (99)
6 TIGR03102 halo_cynanin halocya 98.2 1.3E-05 2.9E-10 61.1 9.4 87 16-115 22-115 (115)
7 TIGR02375 pseudoazurin pseudoa 98.0 3.3E-05 7.1E-10 59.0 8.4 75 39-118 15-90 (116)
8 COG3794 PetE Plastocyanin [Ene 98.0 7.4E-05 1.6E-09 58.2 9.4 79 23-115 44-127 (128)
9 TIGR02657 amicyanin amicyanin. 97.3 0.0019 4.1E-08 45.8 7.9 69 40-115 12-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.0 0.0034 7.4E-08 49.6 7.2 75 41-115 54-148 (148)
11 KOG3858 Ephrin, ligand for Eph 96.8 0.032 7E-07 47.5 12.1 77 43-120 47-165 (233)
12 PF06525 SoxE: Sulfocyanin (So 96.6 0.012 2.5E-07 49.0 7.9 77 43-119 90-190 (196)
13 PF00812 Ephrin: Ephrin; Inte 96.3 0.0013 2.9E-08 52.1 0.8 74 42-115 25-144 (145)
14 TIGR03094 sulfo_cyanin sulfocy 94.5 0.21 4.6E-06 41.4 7.7 30 89-118 159-188 (195)
15 TIGR03096 nitroso_cyanin nitro 94.1 0.092 2E-06 41.3 4.6 59 39-105 61-123 (135)
16 COG4454 Uncharacterized copper 92.6 0.2 4.3E-06 40.4 4.3 77 39-116 63-158 (158)
17 PF13473 Cupredoxin_1: Cupredo 91.3 0.18 3.9E-06 36.7 2.6 62 40-114 36-104 (104)
18 PRK02888 nitrous-oxide reducta 88.0 1.4 3.1E-05 42.5 6.5 66 40-116 556-634 (635)
19 TIGR02866 CoxB cytochrome c ox 85.7 1.4 2.9E-05 36.2 4.4 66 41-117 119-193 (201)
20 TIGR02376 Cu_nitrite_red nitri 85.1 2.8 6E-05 36.8 6.3 75 41-118 61-148 (311)
21 PF00116 COX2: Cytochrome C ox 85.1 1.8 4E-05 32.8 4.6 68 40-115 47-120 (120)
22 PF07732 Cu-oxidase_3: Multico 84.2 1 2.3E-05 33.8 2.9 78 40-117 27-116 (117)
23 COG1622 CyoA Heme/copper-type 81.1 5 0.00011 34.4 6.2 90 22-119 118-215 (247)
24 PRK10378 inactive ferrous ion 71.7 33 0.0007 31.3 9.0 29 84-117 90-118 (375)
25 MTH00047 COX2 cytochrome c oxi 71.6 13 0.00027 30.8 5.9 32 85-118 159-193 (194)
26 PLN02604 oxidoreductase 66.2 38 0.00082 32.2 8.6 35 84-118 112-146 (566)
27 PF02839 CBM_5_12: Carbohydrat 64.1 3.5 7.5E-05 25.1 0.9 19 34-52 1-19 (41)
28 TIGR03388 ascorbase L-ascorbat 62.9 22 0.00047 33.5 6.3 79 40-118 33-123 (541)
29 TIGR01480 copper_res_A copper- 62.3 20 0.00044 34.4 6.0 84 28-114 488-586 (587)
30 PF10377 ATG11: Autophagy-rela 56.0 19 0.00042 27.7 4.0 18 41-58 41-58 (129)
31 PLN00044 multi-copper oxidase- 54.4 35 0.00075 32.9 6.2 74 41-118 62-150 (596)
32 TIGR02695 azurin azurin. Azuri 52.4 15 0.00032 28.7 2.7 29 84-113 91-124 (125)
33 cd06555 ASCH_PF0470_like ASC-1 48.1 19 0.00041 27.2 2.8 15 41-55 30-44 (109)
34 PF05382 Amidase_5: Bacterioph 47.8 46 0.00099 26.4 5.0 35 41-75 74-114 (145)
35 PF12961 DUF3850: Domain of Un 46.3 13 0.00028 26.3 1.5 13 40-52 26-38 (72)
36 MTH00140 COX2 cytochrome c oxi 44.3 87 0.0019 26.2 6.4 31 85-117 183-216 (228)
37 PLN02835 oxidoreductase 43.9 86 0.0019 29.7 7.0 78 41-118 62-150 (539)
38 PLN02191 L-ascorbate oxidase 42.8 90 0.0019 29.8 7.0 78 40-117 55-144 (574)
39 PLN02354 copper ion binding / 41.9 77 0.0017 30.2 6.3 74 41-118 60-148 (552)
40 TIGR01480 copper_res_A copper- 40.3 72 0.0016 30.7 5.9 77 40-117 77-163 (587)
41 PLN02168 copper ion binding / 37.7 1.2E+02 0.0026 28.9 7.0 79 40-118 58-147 (545)
42 MTH00129 COX2 cytochrome c oxi 34.5 1.4E+02 0.003 25.2 6.1 31 85-117 183-216 (230)
43 cd02859 AMPKbeta_GBD_like AMP- 34.4 1.5E+02 0.0033 20.3 5.5 22 48-69 3-26 (79)
44 PF06462 Hyd_WA: Propeller; I 33.9 87 0.0019 18.2 3.5 26 84-109 2-27 (32)
45 PLN02792 oxidoreductase 33.7 1.4E+02 0.0031 28.3 6.7 78 41-118 49-137 (536)
46 MTH00154 COX2 cytochrome c oxi 32.4 65 0.0014 27.1 3.9 30 85-116 183-215 (227)
47 PTZ00047 cytochrome c oxidase 32.4 1.5E+02 0.0034 24.0 5.8 30 85-116 116-148 (162)
48 PF02362 B3: B3 DNA binding do 31.5 29 0.00062 24.2 1.4 19 38-56 69-87 (100)
49 MTH00168 COX2 cytochrome c oxi 30.7 74 0.0016 26.6 3.9 31 85-117 183-216 (225)
50 TIGR03389 laccase laccase, pla 30.5 1.7E+02 0.0036 27.6 6.6 77 42-119 37-125 (539)
51 KOG2675 Adenylate cyclase-asso 29.8 79 0.0017 29.7 4.2 6 161-166 264-269 (480)
52 PLN02991 oxidoreductase 29.8 2.4E+02 0.0052 26.9 7.6 78 40-117 60-148 (543)
53 MTH00098 COX2 cytochrome c oxi 29.7 77 0.0017 26.6 3.9 30 85-116 183-215 (227)
54 MTH00139 COX2 cytochrome c oxi 29.5 76 0.0016 26.5 3.8 31 85-117 183-216 (226)
55 KOG3342 Signal peptidase I [In 29.5 22 0.00048 29.0 0.6 21 42-62 77-102 (180)
56 MTH00117 COX2 cytochrome c oxi 29.4 78 0.0017 26.6 3.8 30 85-116 183-215 (227)
57 MTH00023 COX2 cytochrome c oxi 28.9 2E+02 0.0044 24.3 6.3 31 85-117 194-227 (240)
58 TIGR01433 CyoA cytochrome o ub 27.9 89 0.0019 26.2 3.9 68 42-117 142-215 (226)
59 MTH00038 COX2 cytochrome c oxi 27.7 90 0.002 26.2 3.9 31 85-117 183-216 (229)
60 smart00495 ChtBD3 Chitin-bindi 27.3 41 0.00089 20.2 1.4 18 34-51 1-18 (41)
61 KOG3416 Predicted nucleic acid 27.2 64 0.0014 25.4 2.7 30 20-52 41-71 (134)
62 PRK09752 adhesin; Provisional 27.0 1.6E+02 0.0034 31.1 6.1 12 45-56 837-848 (1250)
63 TIGR02228 sigpep_I_arch signal 27.0 1.9E+02 0.0041 22.9 5.5 23 40-62 58-85 (158)
64 PF07731 Cu-oxidase_2: Multico 26.9 30 0.00066 25.5 0.9 32 85-116 105-136 (138)
65 PF08980 DUF1883: Domain of un 25.0 12 0.00026 27.8 -1.6 73 41-115 9-86 (94)
66 MTH00008 COX2 cytochrome c oxi 24.6 1.1E+02 0.0023 25.8 3.8 31 85-117 183-216 (228)
67 TIGR01432 QOXA cytochrome aa3 24.4 1.1E+02 0.0024 25.3 3.8 32 84-117 172-206 (217)
68 PTZ00213 asparagine synthetase 24.0 80 0.0017 28.6 3.1 24 16-41 196-228 (348)
69 KOG1546 Metacaspase involved i 23.7 47 0.001 30.1 1.6 15 42-56 134-148 (362)
70 PF04014 Antitoxin-MazE: Antid 23.6 19 0.0004 22.6 -0.7 36 21-59 2-37 (47)
71 PF05283 MGC-24: Multi-glycosy 23.1 4.3E+02 0.0094 21.8 8.1 22 89-110 71-92 (186)
72 MTH00076 COX2 cytochrome c oxi 23.0 1.1E+02 0.0025 25.6 3.7 31 85-117 183-216 (228)
73 MTH00051 COX2 cytochrome c oxi 22.5 1.1E+02 0.0024 25.7 3.6 31 85-117 187-220 (234)
74 COG1430 Uncharacterized conser 21.6 52 0.0011 25.6 1.3 20 36-55 104-123 (126)
75 PF09792 But2: Ubiquitin 3 bin 21.4 1.4E+02 0.0031 23.3 3.8 32 85-119 100-131 (143)
76 PRK06975 bifunctional uroporph 21.2 3.2E+02 0.0069 26.5 6.8 8 17-24 82-89 (656)
77 cd00645 AsnA Asparagine synthe 21.1 94 0.002 27.8 2.9 39 16-62 185-232 (309)
78 PF01345 DUF11: Domain of unkn 21.0 70 0.0015 21.5 1.7 21 34-54 28-48 (76)
79 MTH00027 COX2 cytochrome c oxi 20.6 1.4E+02 0.0031 25.7 3.9 31 85-117 217-250 (262)
80 COG3627 PhnJ Uncharacterized e 20.6 1.1E+02 0.0024 26.3 3.1 24 84-107 257-280 (291)
81 PF14326 DUF4384: Domain of un 20.3 73 0.0016 22.1 1.7 15 42-56 2-16 (83)
82 PRK11528 hypothetical protein; 20.1 1.3E+02 0.0028 25.9 3.5 37 26-62 26-71 (254)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=279.15 Aligned_cols=108 Identities=35% Similarity=0.683 Sum_probs=101.6
Q ss_pred HHHhhccccceEEEecCCCCCcCCCCcccccCCCceEeCCEEEEEECCC-CeEEEeCcccCCCCCCCCCCCCCCCCCcEE
Q 030594 8 LLLVAPAVYAVEYTVGDTSGWTQGFDYTSWVSGKTFKVGDVLVFNYGGL-HKVDRVSESDYNNCASSNALESHDDGNTRI 86 (175)
Q Consensus 8 ~~~l~~~a~a~~~~VGg~~GWt~~~~Y~~Wa~~~~F~vGDsLvF~y~~~-HsV~~V~~~~Y~~C~~~~~~~~~s~G~~~v 86 (175)
++++...+.+++|+|||+.||+...||++|+++++|++||+|+|+|+++ |+|+||++++|++|+.++++..+++|++.|
T Consensus 11 ~~~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v 90 (167)
T PLN03148 11 ALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFI 90 (167)
T ss_pred HHHhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEE
Confidence 3345567889999999999999888999999999999999999999999 999999999999999999999999999999
Q ss_pred EecCCccEEEEcCCCCCCCCCCeEEEEeec
Q 030594 87 NLKAPGTQYFICPTAGHCPGGMKLAVTVVA 116 (175)
Q Consensus 87 ~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 116 (175)
+|+++|+|||||+ .+||++||||.|+|.+
T Consensus 91 ~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 91 PLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred EecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 9999999999999 5899999999999964
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=2.2e-32 Score=197.80 Aligned_cols=81 Identities=51% Similarity=0.998 Sum_probs=68.3
Q ss_pred CcCCC---CcccccCCCceEeCCEEEEEECCC-CeEEEeCcccCCCCCCCCCCCCCCCCCcEEEecCCccEEEEcCCCCC
Q 030594 28 WTQGF---DYTSWVSGKTFKVGDVLVFNYGGL-HKVDRVSESDYNNCASSNALESHDDGNTRINLKAPGTQYFICPTAGH 103 (175)
Q Consensus 28 Wt~~~---~Y~~Wa~~~~F~vGDsLvF~y~~~-HsV~~V~~~~Y~~C~~~~~~~~~s~G~~~v~l~~~G~~YFiC~v~~H 103 (175)
|++++ +|++||++++|++||+|+|+|+++ |+|+||++++|++|+.++++..+++|++.|+|+++|++||||++++|
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~H 80 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGH 80 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCc
Confidence 88887 899999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 030594 104 CPGGM 108 (175)
Q Consensus 104 C~~Gm 108 (175)
|++||
T Consensus 81 C~~Gq 85 (85)
T PF02298_consen 81 CQKGQ 85 (85)
T ss_dssp TTTT-
T ss_pred ccccC
Confidence 99998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.55 E-value=9.9e-07 Score=66.95 Aligned_cols=88 Identities=23% Similarity=0.260 Sum_probs=58.3
Q ss_pred ccceEE--EecCCCCC-cCCCCcccccCCCceEeCCEEEEEECCC--CeEEEeCcccCCCCCCCCCCCCCCCC-CcEEEe
Q 030594 15 VYAVEY--TVGDTSGW-TQGFDYTSWVSGKTFKVGDVLVFNYGGL--HKVDRVSESDYNNCASSNALESHDDG-NTRINL 88 (175)
Q Consensus 15 a~a~~~--~VGg~~GW-t~~~~Y~~Wa~~~~F~vGDsLvF~y~~~--HsV~~V~~~~Y~~C~~~~~~~~~s~G-~~~v~l 88 (175)
+.++++ .+|.+.|+ .+.+ +..++++||+|.|..... |+++--.. +..... .. ....| ...+++
T Consensus 26 a~a~~~~V~~~~~~~~~~F~P------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~-~~-~~~pg~t~~~tF 94 (119)
T PRK02710 26 ASAETVEVKMGSDAGMLAFEP------STLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHK-DL-AFAPGESWEETF 94 (119)
T ss_pred cccceEEEEEccCCCeeEEeC------CEEEEcCCCEEEEEECCCCCceEEecCC---cccccc-cc-ccCCCCEEEEEe
Confidence 345555 45554444 4544 367999999999987554 99864211 111111 11 12233 367899
Q ss_pred cCCccEEEEcCCCCCCCCCCeEEEEee
Q 030594 89 KAPGTQYFICPTAGHCPGGMKLAVTVV 115 (175)
Q Consensus 89 ~~~G~~YFiC~v~~HC~~GmKl~I~V~ 115 (175)
+++|.|-|+|. .|=+.|||..|+|.
T Consensus 95 ~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 95 SEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred cCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 99999999998 79889999999984
No 4
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.47 E-value=1.4e-06 Score=63.95 Aligned_cols=89 Identities=19% Similarity=0.189 Sum_probs=59.0
Q ss_pred EEEecC-CCCCcCCCCcccccCCCceEeCCEEEEEECCC--CeEEEeCcccCC-----CCCCCCCCCCCCCC-CcEEEec
Q 030594 19 EYTVGD-TSGWTQGFDYTSWVSGKTFKVGDVLVFNYGGL--HKVDRVSESDYN-----NCASSNALESHDDG-NTRINLK 89 (175)
Q Consensus 19 ~~~VGg-~~GWt~~~~Y~~Wa~~~~F~vGDsLvF~y~~~--HsV~~V~~~~Y~-----~C~~~~~~~~~s~G-~~~v~l~ 89 (175)
++.+|. +.+-.+.|+ ..++++||+|+|..... |+++..+...-+ .............| ...++++
T Consensus 2 ~v~~g~~~g~~~F~P~------~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~ 75 (99)
T TIGR02656 2 TVKMGADKGALVFEPA------KISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFS 75 (99)
T ss_pred EEEEecCCCceeEeCC------EEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeC
Confidence 456774 445777763 78999999999997654 999864321000 00110000111223 3578899
Q ss_pred CCccEEEEcCCCCCCCCCCeEEEEee
Q 030594 90 APGTQYFICPTAGHCPGGMKLAVTVV 115 (175)
Q Consensus 90 ~~G~~YFiC~v~~HC~~GmKl~I~V~ 115 (175)
.+|.|-|+|. .|++.||+-.|+|.
T Consensus 76 ~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 76 TPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CCEEEEEEcC--CccccCCEEEEEEC
Confidence 9999999998 89999999999984
No 5
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.31 E-value=2.1e-06 Score=62.78 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=52.1
Q ss_pred CCCceEeCCEEEEEEC-CC-CeEEEeCcc--cCCCCCCCCC---CCCCCCCC-cEEEecCCccEEEEcCCCCCCCCCCeE
Q 030594 39 SGKTFKVGDVLVFNYG-GL-HKVDRVSES--DYNNCASSNA---LESHDDGN-TRINLKAPGTQYFICPTAGHCPGGMKL 110 (175)
Q Consensus 39 ~~~~F~vGDsLvF~y~-~~-HsV~~V~~~--~Y~~C~~~~~---~~~~s~G~-~~v~l~~~G~~YFiC~v~~HC~~GmKl 110 (175)
+..++++||+|.|.+. .. |+++..+.. .-........ ......|. ..++++++|.|.|+|. + |...||+-
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 3678999999999995 44 999998521 0011111111 01122333 4788889999999999 7 99999999
Q ss_pred EEEee
Q 030594 111 AVTVV 115 (175)
Q Consensus 111 ~I~V~ 115 (175)
.|+|.
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.21 E-value=1.3e-05 Score=61.10 Aligned_cols=87 Identities=24% Similarity=0.396 Sum_probs=60.6
Q ss_pred cceEEEec--CC-CCCcCCCCcccccCCCceEeCCEEEEEECC--C-CeEEEeCcccCCCCCCCCCCCCCCCC-CcEEEe
Q 030594 16 YAVEYTVG--DT-SGWTQGFDYTSWVSGKTFKVGDVLVFNYGG--L-HKVDRVSESDYNNCASSNALESHDDG-NTRINL 88 (175)
Q Consensus 16 ~a~~~~VG--g~-~GWt~~~~Y~~Wa~~~~F~vGDsLvF~y~~--~-HsV~~V~~~~Y~~C~~~~~~~~~s~G-~~~v~l 88 (175)
...++.|| ++ .+..+.+ ...++++||+|.|.++. . |+|.-.....|+. ... ....| ...++|
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~-~~~~G~t~s~Tf 90 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDP------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SER-VSEEGTTYEHTF 90 (115)
T ss_pred ceEEEEecccCCCCceeEeC------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----ccc-ccCCCCEEEEEe
Confidence 44567888 32 2466666 36799999999999964 3 9998543233331 111 12223 468999
Q ss_pred cCCccEEEEcCCCCCCCCCCeEEEEee
Q 030594 89 KAPGTQYFICPTAGHCPGGMKLAVTVV 115 (175)
Q Consensus 89 ~~~G~~YFiC~v~~HC~~GmKl~I~V~ 115 (175)
+++|.|-|+|. -|=..|||-.|+|.
T Consensus 91 ~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 91 EEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred cCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 99999999998 57677999999983
No 7
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.04 E-value=3.3e-05 Score=59.00 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCCceEeCCEEEEEECCC-CeEEEeCcccCCCCCCCCCCCCCCCCCcEEEecCCccEEEEcCCCCCCCCCCeEEEEeecC
Q 030594 39 SGKTFKVGDVLVFNYGGL-HKVDRVSESDYNNCASSNALESHDDGNTRINLKAPGTQYFICPTAGHCPGGMKLAVTVVAA 117 (175)
Q Consensus 39 ~~~~F~vGDsLvF~y~~~-HsV~~V~~~~Y~~C~~~~~~~~~s~G~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 117 (175)
...++++||+|.|.+... |+|........+. .+....-.+....++++++|.|-|+|. .|=..||+-.|+|...
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 367899999999999877 9998653211100 111111112336789999999999998 7999999999999874
Q ss_pred C
Q 030594 118 S 118 (175)
Q Consensus 118 ~ 118 (175)
+
T Consensus 90 ~ 90 (116)
T TIGR02375 90 P 90 (116)
T ss_pred C
Confidence 3
No 8
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.97 E-value=7.4e-05 Score=58.17 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=57.5
Q ss_pred cCCCCCcCCCCcccccCCCceEeCCEEEEEECCC--CeEEEeCcccCCCCCCCCCCCCCCCC---CcEEEecCCccEEEE
Q 030594 23 GDTSGWTQGFDYTSWVSGKTFKVGDVLVFNYGGL--HKVDRVSESDYNNCASSNALESHDDG---NTRINLKAPGTQYFI 97 (175)
Q Consensus 23 Gg~~GWt~~~~Y~~Wa~~~~F~vGDsLvF~y~~~--HsV~~V~~~~Y~~C~~~~~~~~~s~G---~~~v~l~~~G~~YFi 97 (175)
++...-.+.| +..++++||++.|.+... |||.-.... ... ....+..+ ..+.+++++|.|.|+
T Consensus 44 ~~~~~~vF~P------A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~-----~~~-g~~~~~~~~~~s~~~Tfe~~G~Y~Y~ 111 (128)
T COG3794 44 VDIGAMVFEP------AEVTVKPGDTVTWVNTDSVGHNVTAVGGM-----DPE-GSGTLKAGINESFTHTFETPGEYTYY 111 (128)
T ss_pred ccCcceeEcC------cEEEECCCCEEEEEECCCCCceEEEeCCC-----Ccc-cccccccCCCcceEEEecccceEEEE
Confidence 3444566666 478999999999999877 999987543 111 11112222 257889999999999
Q ss_pred cCCCCCCCCCCeEEEEee
Q 030594 98 CPTAGHCPGGMKLAVTVV 115 (175)
Q Consensus 98 C~v~~HC~~GmKl~I~V~ 115 (175)
|. =|=..|||-.|.|.
T Consensus 112 C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 112 CT--PHPGMGMKGKIVVG 127 (128)
T ss_pred ec--cCCCCCcEEEEEeC
Confidence 98 48889999999985
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.30 E-value=0.0019 Score=45.76 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=46.8
Q ss_pred CCceEeCCEEEEEECCC--CeEEEeCcccCCCCCCCCCCCCCCCC-CcEEEecCCccEEEEcCCCCCCCCCCeEEEEee
Q 030594 40 GKTFKVGDVLVFNYGGL--HKVDRVSESDYNNCASSNALESHDDG-NTRINLKAPGTQYFICPTAGHCPGGMKLAVTVV 115 (175)
Q Consensus 40 ~~~F~vGDsLvF~y~~~--HsV~~V~~~~Y~~C~~~~~~~~~s~G-~~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~ 115 (175)
..++++||+|.|..... |+|.-.+..+ ..=....+. ...| ...++++++|.|-|.|...- .||-.|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~~--~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGPM--MKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCCC-ccccccccc--cCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 46889999999999865 9998653221 110011111 1223 35789999999999999744 599998874
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.96 E-value=0.0034 Score=49.62 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=48.0
Q ss_pred CceEeCCEEEEEECCC-----CeEEEeCcc-cCC------------CCCCCCCCCC--CCCCCcEEEecCCccEEEEcCC
Q 030594 41 KTFKVGDVLVFNYGGL-----HKVDRVSES-DYN------------NCASSNALES--HDDGNTRINLKAPGTQYFICPT 100 (175)
Q Consensus 41 ~~F~vGDsLvF~y~~~-----HsV~~V~~~-~Y~------------~C~~~~~~~~--~s~G~~~v~l~~~G~~YFiC~v 100 (175)
.+++.||+++|...+. |........ .+. .|....+... ...+..++++.++|+|||.|.+
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~ 133 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTY 133 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCC
Confidence 4578999999988543 666654321 110 1211111100 0012347788899999999999
Q ss_pred CCCCCCCCeEEEEee
Q 030594 101 AGHCPGGMKLAVTVV 115 (175)
Q Consensus 101 ~~HC~~GmKl~I~V~ 115 (175)
++|=+.||+-.|.|.
T Consensus 134 pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 134 PGHAENGMYGKIVVK 148 (148)
T ss_pred hhHHHCCCEEEEEEC
Confidence 999999999988873
No 11
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.79 E-value=0.032 Score=47.53 Aligned_cols=77 Identities=26% Similarity=0.377 Sum_probs=47.0
Q ss_pred eEeCCEEEEEECC---C-------CeEEEeCcccCCCCCC-CCCCCCC------------------CCCCcEEEecCCc-
Q 030594 43 FKVGDVLVFNYGG---L-------HKVDRVSESDYNNCAS-SNALESH------------------DDGNTRINLKAPG- 92 (175)
Q Consensus 43 F~vGDsLvF~y~~---~-------HsV~~V~~~~Y~~C~~-~~~~~~~------------------s~G~~~v~l~~~G- 92 (175)
.++||.|-+--.. + .-+++|+++.|+.|+. +.+...+ +--...+.+ +||
T Consensus 47 v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG~ 125 (233)
T KOG3858|consen 47 VQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPGH 125 (233)
T ss_pred eccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCCC
Confidence 4568888886532 1 2357789999999996 3332111 111112223 366
Q ss_pred cEEEEcC-----------CCCCCC-CCCeEEEEeecCCCC
Q 030594 93 TQYFICP-----------TAGHCP-GGMKLAVTVVAASPP 120 (175)
Q Consensus 93 ~~YFiC~-----------v~~HC~-~GmKl~I~V~~~~~~ 120 (175)
+||||+. .++-|. ..||+.++|......
T Consensus 126 ~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~~ 165 (233)
T KOG3858|consen 126 TYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPRS 165 (233)
T ss_pred eEEEEeCCCccccccchhhCCEeccCCceEEEEecccCCC
Confidence 6888885 234565 479999999886654
No 12
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.60 E-value=0.012 Score=49.00 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=50.1
Q ss_pred eEeCCEEEEEECCC----CeEEEe-CcccCCCCCC---CCCCCC---C----------CCCCcE---EEecCCccEEEEc
Q 030594 43 FKVGDVLVFNYGGL----HKVDRV-SESDYNNCAS---SNALES---H----------DDGNTR---INLKAPGTQYFIC 98 (175)
Q Consensus 43 F~vGDsLvF~y~~~----HsV~~V-~~~~Y~~C~~---~~~~~~---~----------s~G~~~---v~l~~~G~~YFiC 98 (175)
.-.|-++.|+|.+. |++..+ +...+..+.. .+.+.. . ..|... +.-.++|.||+.|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 44788888888644 999888 3333344422 122210 0 122222 2122689999999
Q ss_pred CCCCCCCCCCeEEEEeecCCC
Q 030594 99 PTAGHCPGGMKLAVTVVAASP 119 (175)
Q Consensus 99 ~v~~HC~~GmKl~I~V~~~~~ 119 (175)
+..+|=+.||-..+.|.....
T Consensus 170 ~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred cCCChhhcCCEEEEEEecCcc
Confidence 999999999999999987653
No 13
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=96.33 E-value=0.0013 Score=52.10 Aligned_cols=74 Identities=27% Similarity=0.467 Sum_probs=45.3
Q ss_pred ceEeCCEEEEEECCC------------CeEEEeCcccCCCCCCCC-CCCCC-------CCCCcEEEec------------
Q 030594 42 TFKVGDVLVFNYGGL------------HKVDRVSESDYNNCASSN-ALESH-------DDGNTRINLK------------ 89 (175)
Q Consensus 42 ~F~vGDsLvF~y~~~------------HsV~~V~~~~Y~~C~~~~-~~~~~-------s~G~~~v~l~------------ 89 (175)
.+++||.|.+--... ..+++|++++|+.|+... +...+ ..|...|++.
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 577899999987533 357889999999999632 22111 1234444432
Q ss_pred -CCc-cEEEEcCCC-----------CCCC-CCCeEEEEee
Q 030594 90 -APG-TQYFICPTA-----------GHCP-GGMKLAVTVV 115 (175)
Q Consensus 90 -~~G-~~YFiC~v~-----------~HC~-~GmKl~I~V~ 115 (175)
++| .||||+.-. +-|. ..|||.|.|.
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 467 688998522 2385 5799999874
No 14
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.52 E-value=0.21 Score=41.35 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=27.1
Q ss_pred cCCccEEEEcCCCCCCCCCCeEEEEeecCC
Q 030594 89 KAPGTQYFICPTAGHCPGGMKLAVTVVAAS 118 (175)
Q Consensus 89 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 118 (175)
.++|.||++|++.+|-+.||=..+.|....
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 478999999999999999999988888764
No 15
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=94.13 E-value=0.092 Score=41.31 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCceEeCCEEEEEECCC----CeEEEeCcccCCCCCCCCCCCCCCCCCcEEEecCCccEEEEcCCCCCCC
Q 030594 39 SGKTFKVGDVLVFNYGGL----HKVDRVSESDYNNCASSNALESHDDGNTRINLKAPGTQYFICPTAGHCP 105 (175)
Q Consensus 39 ~~~~F~vGDsLvF~y~~~----HsV~~V~~~~Y~~C~~~~~~~~~s~G~~~v~l~~~G~~YFiC~v~~HC~ 105 (175)
+..+++.||.+.+.+.+. |.+.. .+|. ....+..-.+...+++.+++|.|.|+|+. ||.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---ISEVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cceEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 456789999998877543 55433 2221 11111111111235777999999999985 664
No 16
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.58 E-value=0.2 Score=40.43 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=50.4
Q ss_pred CCCceEeCCEEEEEECCC----CeEEEeCccc-----CCCCCC------CCC--C--CCCCCCCcEEEecCCccEEEEcC
Q 030594 39 SGKTFKVGDVLVFNYGGL----HKVDRVSESD-----YNNCAS------SNA--L--ESHDDGNTRINLKAPGTQYFICP 99 (175)
Q Consensus 39 ~~~~F~vGDsLvF~y~~~----HsV~~V~~~~-----Y~~C~~------~~~--~--~~~s~G~~~v~l~~~G~~YFiC~ 99 (175)
++..++.|.+++|.-.+. |....- +++ +..=.. ..+ + .--.+|..++.+.++|.|=|+|.
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~-~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMD-APDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEecc-CccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 467889999999987655 555432 111 100000 000 0 11123445788899999999999
Q ss_pred CCCCCCCCCeEEEEeec
Q 030594 100 TAGHCPGGMKLAVTVVA 116 (175)
Q Consensus 100 v~~HC~~GmKl~I~V~~ 116 (175)
+++|=+.||.-.|+|.+
T Consensus 142 iPGHy~AGM~g~itV~p 158 (158)
T COG4454 142 IPGHYEAGMVGEITVSP 158 (158)
T ss_pred CCCcccCCcEEEEEeCC
Confidence 99999999999999863
No 17
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=91.33 E-value=0.18 Score=36.69 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=28.6
Q ss_pred CCceEeCCEEEEEE--CCC--CeEEEeCcccCCCCCCCCCCCCCCCCC-cEEEe--cCCccEEEEcCCCCCCCCCCeEEE
Q 030594 40 GKTFKVGDVLVFNY--GGL--HKVDRVSESDYNNCASSNALESHDDGN-TRINL--KAPGTQYFICPTAGHCPGGMKLAV 112 (175)
Q Consensus 40 ~~~F~vGDsLvF~y--~~~--HsV~~V~~~~Y~~C~~~~~~~~~s~G~-~~v~l--~~~G~~YFiC~v~~HC~~GmKl~I 112 (175)
..+++.|+.+.+.+ ... |++..-+ .+.......|. .++++ .++|.|=|+|+.+.+ ||-.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~---------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l 102 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPD---------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL 102 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGG---------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECC---------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence 67999999554444 433 6664322 00101122232 34444 899999999996552 66666
Q ss_pred Ee
Q 030594 113 TV 114 (175)
Q Consensus 113 ~V 114 (175)
+|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 54
No 18
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.00 E-value=1.4 Score=42.54 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=43.0
Q ss_pred CCceEeCCEEEEEECCC-------CeEEEeCcccCCCCCCCCCCCCCCCC---CcEEEecCCccEEEEcCCCCCCC---C
Q 030594 40 GKTFKVGDVLVFNYGGL-------HKVDRVSESDYNNCASSNALESHDDG---NTRINLKAPGTQYFICPTAGHCP---G 106 (175)
Q Consensus 40 ~~~F~vGDsLvF~y~~~-------HsV~~V~~~~Y~~C~~~~~~~~~s~G---~~~v~l~~~G~~YFiC~v~~HC~---~ 106 (175)
..+++.||.+.|..++- |+...- .|.- ......| ...|+.++||.|||+|+. .|- .
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip---~~nI------~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~ 624 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIP---NYGV------NMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHM 624 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeec---ccCc------cEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcc
Confidence 56899999999999872 444331 1110 0111122 236778999999999996 343 4
Q ss_pred CCeEEEEeec
Q 030594 107 GMKLAVTVVA 116 (175)
Q Consensus 107 GmKl~I~V~~ 116 (175)
+|+-.|.|.+
T Consensus 625 ~M~G~~iVep 634 (635)
T PRK02888 625 EMRGRMLVEP 634 (635)
T ss_pred cceEEEEEEe
Confidence 7988888865
No 19
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=85.68 E-value=1.4 Score=36.17 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=42.7
Q ss_pred CceEeCCEEEEEECCC---CeEEEeCcccCCCCCCCCCCCCCCCCC---cEEEecCCccEEEEcCCCCCCC---CCCeEE
Q 030594 41 KTFKVGDVLVFNYGGL---HKVDRVSESDYNNCASSNALESHDDGN---TRINLKAPGTQYFICPTAGHCP---GGMKLA 111 (175)
Q Consensus 41 ~~F~vGDsLvF~y~~~---HsV~~V~~~~Y~~C~~~~~~~~~s~G~---~~v~l~~~G~~YFiC~v~~HC~---~GmKl~ 111 (175)
..+.+|+.++|+-++. |+...-+... .... -.|. ..++.+++|.|++.|+. -|- ..|+..
T Consensus 119 l~vp~g~~v~~~~ts~DV~Hsf~ip~~~~--------k~da-~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~~ 187 (201)
T TIGR02866 119 LVVPAGTPVRLQVTSKDVIHSFWVPELGG--------KIDA-IPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLMLFK 187 (201)
T ss_pred EEEEcCCEEEEEEEeCchhhcccccccCc--------eEEe-cCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCeEE
Confidence 3578999999998765 6554422110 0000 1122 35688999999999996 443 569999
Q ss_pred EEeecC
Q 030594 112 VTVVAA 117 (175)
Q Consensus 112 I~V~~~ 117 (175)
|.|.+.
T Consensus 188 v~v~~~ 193 (201)
T TIGR02866 188 VVVVER 193 (201)
T ss_pred EEEECH
Confidence 998764
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=85.14 E-value=2.8 Score=36.76 Aligned_cols=75 Identities=23% Similarity=0.319 Sum_probs=46.6
Q ss_pred CceEeCCEEEEEECCC------CeEEEeCcccCCCCCCCCCCCCCCCCC---cEEEecCCccEEEEcCC----CCCCCCC
Q 030594 41 KTFKVGDVLVFNYGGL------HKVDRVSESDYNNCASSNALESHDDGN---TRINLKAPGTQYFICPT----AGHCPGG 107 (175)
Q Consensus 41 ~~F~vGDsLvF~y~~~------HsV~~V~~~~Y~~C~~~~~~~~~s~G~---~~v~l~~~G~~YFiC~v----~~HC~~G 107 (175)
.+++.||+++.++.+. |++..=-....+ ..........|. ..|+++.+|+|||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 5789999999877543 555331100000 000111122332 46788899999999985 3477789
Q ss_pred CeEEEEeecCC
Q 030594 108 MKLAVTVVAAS 118 (175)
Q Consensus 108 mKl~I~V~~~~ 118 (175)
|.-.+.|....
T Consensus 138 l~G~liV~~~~ 148 (311)
T TIGR02376 138 MNGAIMVLPRE 148 (311)
T ss_pred cceEEEeeccC
Confidence 99999998643
No 21
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=85.10 E-value=1.8 Score=32.79 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=41.0
Q ss_pred CCceEeCCEEEEEECCC---CeEEEeCcccCCCCCCCCCCCCCCCCCcEEEecCCccEEEEcCCCCCCCCC---CeEEEE
Q 030594 40 GKTFKVGDVLVFNYGGL---HKVDRVSESDYNNCASSNALESHDDGNTRINLKAPGTQYFICPTAGHCPGG---MKLAVT 113 (175)
Q Consensus 40 ~~~F~vGDsLvF~y~~~---HsV~~V~~~~Y~~C~~~~~~~~~s~G~~~v~l~~~G~~YFiC~v~~HC~~G---mKl~I~ 113 (175)
...+..|+.++|+.++. |+...-...-=..+.+. ..-...++.+++|.|++.|. .-|-.| |+..|.
T Consensus 47 ~l~lp~g~~v~~~ltS~DViHsf~ip~~~~k~d~~PG------~~~~~~~~~~~~G~y~~~C~--e~CG~gH~~M~~~v~ 118 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDVIHSFWIPELGIKMDAIPG------RTNSVTFTPDKPGTYYGQCA--EYCGAGHSFMPGKVI 118 (120)
T ss_dssp EEEEETTSEEEEEEEESSS-EEEEETTCTEEEEEBTT------CEEEEEEEESSSEEEEEEE---SSSSTTGGG-EEEEE
T ss_pred eecccccceEeEEEEcCCccccccccccCcccccccc------cceeeeeeeccCCcEEEcCc--cccCcCcCCCeEEEE
Confidence 34578999999999765 77764211100001111 01113678899999999998 478655 888877
Q ss_pred ee
Q 030594 114 VV 115 (175)
Q Consensus 114 V~ 115 (175)
|.
T Consensus 119 VV 120 (120)
T PF00116_consen 119 VV 120 (120)
T ss_dssp EE
T ss_pred EC
Confidence 63
No 22
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=84.18 E-value=1 Score=33.84 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=47.1
Q ss_pred CCceEeCCEEEEEECCC----CeEEEe----Ccc-cCC--CCCCCCCCCCCCCCCcEEEecC-CccEEEEcCCCCCCCCC
Q 030594 40 GKTFKVGDVLVFNYGGL----HKVDRV----SES-DYN--NCASSNALESHDDGNTRINLKA-PGTQYFICPTAGHCPGG 107 (175)
Q Consensus 40 ~~~F~vGDsLvF~y~~~----HsV~~V----~~~-~Y~--~C~~~~~~~~~s~G~~~v~l~~-~G~~YFiC~v~~HC~~G 107 (175)
..+++.||+|.+++.+. +++.-= ... ..| ......++.-..+-...|++++ +|++||-|-...|=..|
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G 106 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG 106 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence 46899999999999754 455331 111 001 0111112211122235788888 99999999988753489
Q ss_pred CeEEEEeecC
Q 030594 108 MKLAVTVVAA 117 (175)
Q Consensus 108 mKl~I~V~~~ 117 (175)
|--.|.|.+.
T Consensus 107 L~G~~iV~~~ 116 (117)
T PF07732_consen 107 LYGAIIVEPP 116 (117)
T ss_dssp EEEEEEEE-T
T ss_pred CEEEEEEcCC
Confidence 9988888764
No 23
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=81.11 E-value=5 Score=34.42 Aligned_cols=90 Identities=20% Similarity=0.173 Sum_probs=55.8
Q ss_pred ecCCCCCcCC-CCcccccCC-CceEeCCEEEEEECCC---CeEEEeCcccCCCCCCCCCCCCCCCCCcEEEecCCccEEE
Q 030594 22 VGDTSGWTQG-FDYTSWVSG-KTFKVGDVLVFNYGGL---HKVDRVSESDYNNCASSNALESHDDGNTRINLKAPGTQYF 96 (175)
Q Consensus 22 VGg~~GWt~~-~~Y~~Wa~~-~~F~vGDsLvF~y~~~---HsV~~V~~~~Y~~C~~~~~~~~~s~G~~~v~l~~~G~~YF 96 (175)
+|-.-.|.+. ++|.-+..+ ..+.+|..++|+-++. |+...-.... +-=...+ ..-...++.+++|.|+.
T Consensus 118 ~~~qw~W~f~Yp~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~IP~l~~-k~d~iPG-----~~~~~~~~~~~~G~Y~g 191 (247)
T COG1622 118 TAYQWKWLFIYPDYGIATVNELVLPVGRPVRFKLTSADVIHSFWIPQLGG-KIDAIPG-----MTTELWLTANKPGTYRG 191 (247)
T ss_pred EEEEEEEEEEccCcCccccceEEEeCCCeEEEEEEechhceeEEecCCCc-eeeecCC-----ceEEEEEecCCCeEEEE
Confidence 3433346554 234445544 3789999999999876 7765532210 0000000 11224678899999999
Q ss_pred EcCCCCCCC---CCCeEEEEeecCCC
Q 030594 97 ICPTAGHCP---GGMKLAVTVVAASP 119 (175)
Q Consensus 97 iC~v~~HC~---~GmKl~I~V~~~~~ 119 (175)
+|.. -|- ..|+..|.|.+...
T Consensus 192 ~Cae--~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 192 ICAE--YCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EcHh--hcCCCcccceEEEEEEcHHH
Confidence 9984 665 45999999998753
No 24
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=71.71 E-value=33 Score=31.33 Aligned_cols=29 Identities=24% Similarity=0.254 Sum_probs=20.8
Q ss_pred cEEEecCCccEEEEcCCCCCCCCCCeEEEEeecC
Q 030594 84 TRINLKAPGTQYFICPTAGHCPGGMKLAVTVVAA 117 (175)
Q Consensus 84 ~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 117 (175)
..++| +||+|-|+|+. | ..||-.|+|...
T Consensus 90 l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 90 MTANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 45556 69999999965 5 445777888754
No 25
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=71.57 E-value=13 Score=30.75 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=25.8
Q ss_pred EEEecCCccEEEEcCCCCCCCC---CCeEEEEeecCC
Q 030594 85 RINLKAPGTQYFICPTAGHCPG---GMKLAVTVVAAS 118 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~~ 118 (175)
.++.+++|.|+..|+ .-|-. .|++.|+|.+..
T Consensus 159 ~~~~~~~G~y~g~C~--e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCS--ELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEee--hhhCcCcccCcEEEEEEcCC
Confidence 567789999999998 47754 599999988754
No 26
>PLN02604 oxidoreductase
Probab=66.22 E-value=38 Score=32.16 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=30.5
Q ss_pred cEEEecCCccEEEEcCCCCCCCCCCeEEEEeecCC
Q 030594 84 TRINLKAPGTQYFICPTAGHCPGGMKLAVTVVAAS 118 (175)
Q Consensus 84 ~~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 118 (175)
..|+++++|++||=|-...|-..||.-.|.|....
T Consensus 112 y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 112 YEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 47788899999999999889899999999998653
No 27
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=64.05 E-value=3.5 Score=25.05 Aligned_cols=19 Identities=37% Similarity=0.962 Sum_probs=11.2
Q ss_pred cccccCCCceEeCCEEEEE
Q 030594 34 YTSWVSGKTFKVGDVLVFN 52 (175)
Q Consensus 34 Y~~Wa~~~~F~vGDsLvF~ 52 (175)
|.+|..++....||.+.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5689999999999999753
No 28
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=62.88 E-value=22 Score=33.51 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=48.8
Q ss_pred CCceEeCCEEEEEECCC-C----eE-----EEeCcccCCC--CCCCCCCCCCCCCCcEEEecCCccEEEEcCCCCCCCCC
Q 030594 40 GKTFKVGDVLVFNYGGL-H----KV-----DRVSESDYNN--CASSNALESHDDGNTRINLKAPGTQYFICPTAGHCPGG 107 (175)
Q Consensus 40 ~~~F~vGDsLvF~y~~~-H----sV-----~~V~~~~Y~~--C~~~~~~~~~s~G~~~v~l~~~G~~YFiC~v~~HC~~G 107 (175)
..+++.||.|+++..+. . ++ .+......|. .-..-++.-..+-...|+++++|+|||-|-.+.|-..|
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~G 112 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAG 112 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhcc
Confidence 46899999999987654 2 22 1110000010 00001221112223578889999999999998899999
Q ss_pred CeEEEEeecCC
Q 030594 108 MKLAVTVVAAS 118 (175)
Q Consensus 108 mKl~I~V~~~~ 118 (175)
|.-.|.|....
T Consensus 113 l~G~liV~~~~ 123 (541)
T TIGR03388 113 LYGSLIVDVPD 123 (541)
T ss_pred ceEEEEEecCC
Confidence 99999998653
No 29
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=62.30 E-value=20 Score=34.35 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=51.4
Q ss_pred CcCCC-CcccccCCCceEeCCEEEEEECCC----CeEE------EeCccc--CCCCCCCCCCCCCCCC--CcEEEecCCc
Q 030594 28 WTQGF-DYTSWVSGKTFKVGDVLVFNYGGL----HKVD------RVSESD--YNNCASSNALESHDDG--NTRINLKAPG 92 (175)
Q Consensus 28 Wt~~~-~Y~~Wa~~~~F~vGDsLvF~y~~~----HsV~------~V~~~~--Y~~C~~~~~~~~~s~G--~~~v~l~~~G 92 (175)
|++.- .|.. ....+++.||.+++.+.+. |.+. ++...+ |.. ..+.+.....+ ...|..+.+|
T Consensus 488 wtiNG~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv~V~Pg~t~~~~f~ad~pG 564 (587)
T TIGR01480 488 WSFDGEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTVDVPPGGKRSFRVTADALG 564 (587)
T ss_pred EEECCccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCceeeCCCCEEEEEEECCCCe
Confidence 87753 2222 2357899999999999654 5552 331111 110 00011111111 2356778999
Q ss_pred cEEEEcCCCCCCCCCCeEEEEe
Q 030594 93 TQYFICPTAGHCPGGMKLAVTV 114 (175)
Q Consensus 93 ~~YFiC~v~~HC~~GmKl~I~V 114 (175)
.++|=|-+..|=+.||.-.|.|
T Consensus 565 ~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 565 RWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred EEEEcCCCHHHHhCcCcEEEEe
Confidence 9999999989999999887776
No 30
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=55.97 E-value=19 Score=27.73 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.5
Q ss_pred CceEeCCEEEEEECCCCe
Q 030594 41 KTFKVGDVLVFNYGGLHK 58 (175)
Q Consensus 41 ~~F~vGDsLvF~y~~~Hs 58 (175)
++|++||.+.|-++..|+
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 479999999999998833
No 31
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=54.45 E-value=35 Score=32.92 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=48.6
Q ss_pred CceEeCCEEEEEECCC---------CeEEEeCcccCC-----CCCCCCCCCCCCCCCcEEEe-cCCccEEEEcCCCCCCC
Q 030594 41 KTFKVGDVLVFNYGGL---------HKVDRVSESDYN-----NCASSNALESHDDGNTRINL-KAPGTQYFICPTAGHCP 105 (175)
Q Consensus 41 ~~F~vGDsLvF~y~~~---------HsV~~V~~~~Y~-----~C~~~~~~~~~s~G~~~v~l-~~~G~~YFiC~v~~HC~ 105 (175)
.+++.||+|+.+..+. |.+.|-.....| .| ++.-..+=.++|++ ++.|++||=+-.+.+-.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~ 137 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHRA 137 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhhh
Confidence 5788999999886443 455443111112 24 23222222357888 48999999998888888
Q ss_pred CCCeEEEEeecCC
Q 030594 106 GGMKLAVTVVAAS 118 (175)
Q Consensus 106 ~GmKl~I~V~~~~ 118 (175)
.|+.-.|.|....
T Consensus 138 ~Gl~GalII~~~~ 150 (596)
T PLN00044 138 AGGYGAITINNRD 150 (596)
T ss_pred CcCeeEEEEcCcc
Confidence 8999999997643
No 32
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=52.36 E-value=15 Score=28.67 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=21.8
Q ss_pred cEEEec----CCcc-EEEEcCCCCCCCCCCeEEEE
Q 030594 84 TRINLK----APGT-QYFICPTAGHCPGGMKLAVT 113 (175)
Q Consensus 84 ~~v~l~----~~G~-~YFiC~v~~HC~~GmKl~I~ 113 (175)
+.|+++ ++|. |=|+|+.++|=. .||-.++
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 456665 4675 779999999986 6887654
No 33
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=48.14 E-value=19 Score=27.20 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=12.4
Q ss_pred CceEeCCEEEEEECC
Q 030594 41 KTFKVGDVLVFNYGG 55 (175)
Q Consensus 41 ~~F~vGDsLvF~y~~ 55 (175)
+.|++||.|+|+=-.
T Consensus 30 ~~ikvGD~I~f~~~~ 44 (109)
T cd06555 30 QQIKVGDKILFNDLD 44 (109)
T ss_pred hcCCCCCEEEEEEcC
Confidence 589999999996643
No 34
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=47.85 E-value=46 Score=26.37 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=27.1
Q ss_pred CceEeCCEEEEEEC-----CC-CeEEEeCcccCCCCCCCCC
Q 030594 41 KTFKVGDVLVFNYG-----GL-HKVDRVSESDYNNCASSNA 75 (175)
Q Consensus 41 ~~F~vGDsLvF~y~-----~~-HsV~~V~~~~Y~~C~~~~~ 75 (175)
...+-||.+++.-. .. |..+.++....-.|+-...
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~~ 114 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGAN 114 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCCC
Confidence 46899999998664 23 9999998887788987544
No 35
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=46.27 E-value=13 Score=26.28 Aligned_cols=13 Identities=46% Similarity=0.994 Sum_probs=11.2
Q ss_pred CCceEeCCEEEEE
Q 030594 40 GKTFKVGDVLVFN 52 (175)
Q Consensus 40 ~~~F~vGDsLvF~ 52 (175)
+..|+|||.|+++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 5789999999875
No 36
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.28 E-value=87 Score=26.19 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=24.6
Q ss_pred EEEecCCccEEEEcCCCCCCCC---CCeEEEEeecC
Q 030594 85 RINLKAPGTQYFICPTAGHCPG---GMKLAVTVVAA 117 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~ 117 (175)
.++.+++|.||..|+. -|-. .|+..|.|...
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 5677899999999985 7754 48998888753
No 37
>PLN02835 oxidoreductase
Probab=43.91 E-value=86 Score=29.72 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred CceEeCCEEEEEECCC---------CeEEEeCcccCCC-CCCCCCCCCCCCCCcEEEe-cCCccEEEEcCCCCCCCCCCe
Q 030594 41 KTFKVGDVLVFNYGGL---------HKVDRVSESDYNN-CASSNALESHDDGNTRINL-KAPGTQYFICPTAGHCPGGMK 109 (175)
Q Consensus 41 ~~F~vGDsLvF~y~~~---------HsV~~V~~~~Y~~-C~~~~~~~~~s~G~~~v~l-~~~G~~YFiC~v~~HC~~GmK 109 (175)
.+++.||+|+.+..+. |.+.+-.....|. -..--++.-..+=.+.|++ +++|+|||=+-...+-..|+.
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~ 141 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGF 141 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCccc
Q ss_pred EEEEeecCC
Q 030594 110 LAVTVVAAS 118 (175)
Q Consensus 110 l~I~V~~~~ 118 (175)
-.|.|....
T Consensus 142 G~lIV~~~~ 150 (539)
T PLN02835 142 GAINVYERP 150 (539)
T ss_pred ceeEEeCCC
No 38
>PLN02191 L-ascorbate oxidase
Probab=42.78 E-value=90 Score=29.79 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=47.2
Q ss_pred CCceEeCCEEEEEECCC----------CeEEEeCcccCCC-CCCC-CCCCCCCCCCcEEEecCCccEEEEcCCCCCCCCC
Q 030594 40 GKTFKVGDVLVFNYGGL----------HKVDRVSESDYNN-CASS-NALESHDDGNTRINLKAPGTQYFICPTAGHCPGG 107 (175)
Q Consensus 40 ~~~F~vGDsLvF~y~~~----------HsV~~V~~~~Y~~-C~~~-~~~~~~s~G~~~v~l~~~G~~YFiC~v~~HC~~G 107 (175)
..+++.||+|+.+..+. |.+.+-....+|. -..+ -++.-..+=.+.|+++++|+|||=|-.+.+-..|
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~G 134 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAG 134 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCC
Confidence 35789999998887554 2222211100110 0000 1121111223578889999999999988888899
Q ss_pred CeEEEEeecC
Q 030594 108 MKLAVTVVAA 117 (175)
Q Consensus 108 mKl~I~V~~~ 117 (175)
|.-.|.|...
T Consensus 135 l~G~liV~~~ 144 (574)
T PLN02191 135 LYGSLIVDVA 144 (574)
T ss_pred CEEEEEEccC
Confidence 9999999743
No 39
>PLN02354 copper ion binding / oxidoreductase
Probab=41.86 E-value=77 Score=30.15 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred CceEeCCEEEEEECCC---------CeEEEeCcccCCC-----CCCCCCCCCCCCCCcEEEe-cCCccEEEEcCCCCCCC
Q 030594 41 KTFKVGDVLVFNYGGL---------HKVDRVSESDYNN-----CASSNALESHDDGNTRINL-KAPGTQYFICPTAGHCP 105 (175)
Q Consensus 41 ~~F~vGDsLvF~y~~~---------HsV~~V~~~~Y~~-----C~~~~~~~~~s~G~~~v~l-~~~G~~YFiC~v~~HC~ 105 (175)
.+++.||+|+.+..+. |.+.|-.....|. | ++.-..+=.+.|++ ++.|+|||=+-...+-.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~ 135 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRA 135 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCCCcEEEEEEeCCCCcceEEecCccceec
Q ss_pred CCCeEEEEeecCC
Q 030594 106 GGMKLAVTVVAAS 118 (175)
Q Consensus 106 ~GmKl~I~V~~~~ 118 (175)
.|+.-.|.|....
T Consensus 136 ~Gl~G~lII~~~~ 148 (552)
T PLN02354 136 AGGFGGLRVNSRL 148 (552)
T ss_pred CCccceEEEcCCc
No 40
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=40.31 E-value=72 Score=30.66 Aligned_cols=77 Identities=10% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCceEeCCEEEEEECCC----CeEE----EeCcccCCC-CCCC-CCCCCCCCCCcEEEecCCccEEEEcCCCCCCCCCCe
Q 030594 40 GKTFKVGDVLVFNYGGL----HKVD----RVSESDYNN-CASS-NALESHDDGNTRINLKAPGTQYFICPTAGHCPGGMK 109 (175)
Q Consensus 40 ~~~F~vGDsLvF~y~~~----HsV~----~V~~~~Y~~-C~~~-~~~~~~s~G~~~v~l~~~G~~YFiC~v~~HC~~GmK 109 (175)
..+++.||.|+.++.+. +++. .+.. ..|. ...+ .++.-..+-.+.|++.++|+|||-|-...+=+.|+.
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~-~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~ 155 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGILLPF-QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLY 155 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCcCCc-cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccce
Confidence 45789999999999765 2221 1110 0010 1111 112111122357788899999999987766678999
Q ss_pred EEEEeecC
Q 030594 110 LAVTVVAA 117 (175)
Q Consensus 110 l~I~V~~~ 117 (175)
-.|.|...
T Consensus 156 G~lIV~~~ 163 (587)
T TIGR01480 156 GPLIIDPA 163 (587)
T ss_pred EEEEECCC
Confidence 88888643
No 41
>PLN02168 copper ion binding / pectinesterase
Probab=37.75 E-value=1.2e+02 Score=28.86 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=48.1
Q ss_pred CCceEeCCEEEEEECCC---------CeEEEeCcccCCC-CCCCCCCCCCCCCCcEEEec-CCccEEEEcCCCCCCCCCC
Q 030594 40 GKTFKVGDVLVFNYGGL---------HKVDRVSESDYNN-CASSNALESHDDGNTRINLK-APGTQYFICPTAGHCPGGM 108 (175)
Q Consensus 40 ~~~F~vGDsLvF~y~~~---------HsV~~V~~~~Y~~-C~~~~~~~~~s~G~~~v~l~-~~G~~YFiC~v~~HC~~Gm 108 (175)
..+++.||+|+.+..+. |.+.+-.....|. -...-++.-..+=.+.|++. ++|+|||=+-...+=..|+
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 35899999999998654 3333322211121 01111332222223578884 7999999987666666799
Q ss_pred eEEEEeecCC
Q 030594 109 KLAVTVVAAS 118 (175)
Q Consensus 109 Kl~I~V~~~~ 118 (175)
.-.|.|....
T Consensus 138 ~G~lII~~~~ 147 (545)
T PLN02168 138 YGAIRIYNPE 147 (545)
T ss_pred eeEEEEcCCc
Confidence 9999997643
No 42
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.51 E-value=1.4e+02 Score=25.18 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=23.8
Q ss_pred EEEecCCccEEEEcCCCCCCC---CCCeEEEEeecC
Q 030594 85 RINLKAPGTQYFICPTAGHCP---GGMKLAVTVVAA 117 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~---~GmKl~I~V~~~ 117 (175)
.+..+++|.||..|+. -|- ..|++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEECH
Confidence 5577899999999985 564 458888887653
No 43
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=34.40 E-value=1.5e+02 Score=20.33 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=16.1
Q ss_pred EEEEEECCC-CeEEEe-CcccCCC
Q 030594 48 VLVFNYGGL-HKVDRV-SESDYNN 69 (175)
Q Consensus 48 sLvF~y~~~-HsV~~V-~~~~Y~~ 69 (175)
.++|+|..+ ++|..+ +...++.
T Consensus 3 ~v~f~~~~~a~~V~v~G~F~~W~~ 26 (79)
T cd02859 3 PTTFVWPGGGKEVYVTGSFDNWKK 26 (79)
T ss_pred EEEEEEcCCCcEEEEEEEcCCCCc
Confidence 478999988 888777 5555544
No 44
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=33.88 E-value=87 Score=18.23 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.8
Q ss_pred cEEEecCCccEEEEcCCCCCCCCCCe
Q 030594 84 TRINLKAPGTQYFICPTAGHCPGGMK 109 (175)
Q Consensus 84 ~~v~l~~~G~~YFiC~v~~HC~~GmK 109 (175)
.+..++..|.-||=.++...|..|+.
T Consensus 2 ~VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 2 QVWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred eEEEEcCCCCEEEECcCCCCCCCCCC
Confidence 35678888999999999999998874
No 45
>PLN02792 oxidoreductase
Probab=33.75 E-value=1.4e+02 Score=28.32 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred CceEeCCEEEEEECCC-CeEEEe-CcccCCCCC--CCC------CCCCCCCCCcEEEe-cCCccEEEEcCCCCCCCCCCe
Q 030594 41 KTFKVGDVLVFNYGGL-HKVDRV-SESDYNNCA--SSN------ALESHDDGNTRINL-KAPGTQYFICPTAGHCPGGMK 109 (175)
Q Consensus 41 ~~F~vGDsLvF~y~~~-HsV~~V-~~~~Y~~C~--~~~------~~~~~s~G~~~v~l-~~~G~~YFiC~v~~HC~~GmK 109 (175)
.+++.||+|+.+..+. ..-+.+ -..-++.-+ ..+ |+.-..+=.+.|++ ++.|+|||=+-...+-..|+.
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 128 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGY 128 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccc
Q ss_pred EEEEeecCC
Q 030594 110 LAVTVVAAS 118 (175)
Q Consensus 110 l~I~V~~~~ 118 (175)
-.+.|....
T Consensus 129 G~liI~~~~ 137 (536)
T PLN02792 129 GSLRIYSLP 137 (536)
T ss_pred cceEEeCCc
No 46
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.45 E-value=65 Score=27.06 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=23.5
Q ss_pred EEEecCCccEEEEcCCCCCCCC---CCeEEEEeec
Q 030594 85 RINLKAPGTQYFICPTAGHCPG---GMKLAVTVVA 116 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~ 116 (175)
.++.+++|.||..|+. -|-. -|++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 5678899999999984 6654 4888888765
No 47
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=32.37 E-value=1.5e+02 Score=23.97 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=22.8
Q ss_pred EEEecCCccEEEEcCCCCCCC---CCCeEEEEeec
Q 030594 85 RINLKAPGTQYFICPTAGHCP---GGMKLAVTVVA 116 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~---~GmKl~I~V~~ 116 (175)
.+..+++|.||..|.. -|- ..|.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 4567899999999984 564 45888888764
No 48
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=31.48 E-value=29 Score=24.23 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=12.1
Q ss_pred cCCCceEeCCEEEEEECCC
Q 030594 38 VSGKTFKVGDVLVFNYGGL 56 (175)
Q Consensus 38 a~~~~F~vGDsLvF~y~~~ 56 (175)
+..+.+++||.++|.+...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 3467899999999999864
No 49
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.71 E-value=74 Score=26.62 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=23.8
Q ss_pred EEEecCCccEEEEcCCCCCCCC---CCeEEEEeecC
Q 030594 85 RINLKAPGTQYFICPTAGHCPG---GMKLAVTVVAA 117 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~ 117 (175)
.++.+++|.||..|+. -|-. -|.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5677899999999984 6654 48888887753
No 50
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=30.48 E-value=1.7e+02 Score=27.58 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred ceEeCCEEEEEECCC---------CeEEEe--CcccCCCCCCCCCCCCCCCCCcEEEec-CCccEEEEcCCCCCCCCCCe
Q 030594 42 TFKVGDVLVFNYGGL---------HKVDRV--SESDYNNCASSNALESHDDGNTRINLK-APGTQYFICPTAGHCPGGMK 109 (175)
Q Consensus 42 ~F~vGDsLvF~y~~~---------HsV~~V--~~~~Y~~C~~~~~~~~~s~G~~~v~l~-~~G~~YFiC~v~~HC~~GmK 109 (175)
+++.||+|+.+..+. |.+.|. ...|=-...+--++.-..+-.+.|++. ++|+|||=|-...... ||.
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~-Gl~ 115 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRA-TVY 115 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhhc-cce
Q ss_pred EEEEeecCCC
Q 030594 110 LAVTVVAASP 119 (175)
Q Consensus 110 l~I~V~~~~~ 119 (175)
-.|.|.....
T Consensus 116 G~lIV~~~~~ 125 (539)
T TIGR03389 116 GAIVILPKPG 125 (539)
T ss_pred EEEEEcCCCC
No 51
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=29.78 E-value=79 Score=29.73 Aligned_cols=6 Identities=17% Similarity=-0.086 Sum_probs=2.6
Q ss_pred HHHHHH
Q 030594 161 VMAVLF 166 (175)
Q Consensus 161 ~~~~~~ 166 (175)
++|+++
T Consensus 264 ~~AlFa 269 (480)
T KOG2675|consen 264 RGALFA 269 (480)
T ss_pred HHHHHH
Confidence 444443
No 52
>PLN02991 oxidoreductase
Probab=29.75 E-value=2.4e+02 Score=26.87 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=46.7
Q ss_pred CCceEeCCEEEEEECCC---------CeEEEeCcccCCCCC-CCCCCCCCCCCCcEEEe-cCCccEEEEcCCCCCCCCCC
Q 030594 40 GKTFKVGDVLVFNYGGL---------HKVDRVSESDYNNCA-SSNALESHDDGNTRINL-KAPGTQYFICPTAGHCPGGM 108 (175)
Q Consensus 40 ~~~F~vGDsLvF~y~~~---------HsV~~V~~~~Y~~C~-~~~~~~~~s~G~~~v~l-~~~G~~YFiC~v~~HC~~Gm 108 (175)
..+++.||+|+.+..+. |.+.|......|.=. .--+|.-..+=.+.|++ +++|+|||=+-...+-..|+
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 139 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGG 139 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCC
Confidence 35789999999888655 344442111111100 01123222222357787 58999999987766666788
Q ss_pred eEEEEeecC
Q 030594 109 KLAVTVVAA 117 (175)
Q Consensus 109 Kl~I~V~~~ 117 (175)
.-.|.|...
T Consensus 140 ~G~lIV~~~ 148 (543)
T PLN02991 140 FGAIRISSR 148 (543)
T ss_pred eeeEEEeCC
Confidence 888888764
No 53
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=29.72 E-value=77 Score=26.65 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=23.0
Q ss_pred EEEecCCccEEEEcCCCCCCCC---CCeEEEEeec
Q 030594 85 RINLKAPGTQYFICPTAGHCPG---GMKLAVTVVA 116 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~ 116 (175)
.++.+++|.||..|+. -|-. -|.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 5677899999999985 6654 4888887765
No 54
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.54 E-value=76 Score=26.49 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=24.0
Q ss_pred EEEecCCccEEEEcCCCCCCCC---CCeEEEEeecC
Q 030594 85 RINLKAPGTQYFICPTAGHCPG---GMKLAVTVVAA 117 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~ 117 (175)
.++.+++|.||..|+. -|-. -|++.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeCH
Confidence 5678899999999984 6754 48888887653
No 55
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.52 E-value=22 Score=28.97 Aligned_cols=21 Identities=38% Similarity=0.740 Sum_probs=17.4
Q ss_pred ceEeCCEEEEEECCC-----CeEEEe
Q 030594 42 TFKVGDVLVFNYGGL-----HKVDRV 62 (175)
Q Consensus 42 ~F~vGDsLvF~y~~~-----HsV~~V 62 (175)
.+++||.++|+.... |.|+++
T Consensus 77 p~~vGdivVf~vegR~IPiVHRviK~ 102 (180)
T KOG3342|consen 77 PIRVGDIVVFKVEGREIPIVHRVIKQ 102 (180)
T ss_pred cceeccEEEEEECCccCchhHHHHHH
Confidence 589999999999844 887766
No 56
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.36 E-value=78 Score=26.56 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=23.5
Q ss_pred EEEecCCccEEEEcCCCCCCCC---CCeEEEEeec
Q 030594 85 RINLKAPGTQYFICPTAGHCPG---GMKLAVTVVA 116 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~ 116 (175)
.++.+++|.||-.|+. -|-. .|.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 5678899999999985 6654 4888888765
No 57
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.88 E-value=2e+02 Score=24.31 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=24.2
Q ss_pred EEEecCCccEEEEcCCCCCCCC---CCeEEEEeecC
Q 030594 85 RINLKAPGTQYFICPTAGHCPG---GMKLAVTVVAA 117 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~ 117 (175)
.++.+++|.||..|+ .-|-. -|++.|+|.+.
T Consensus 194 ~~~~~~~G~y~g~C~--e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCS--EICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEch--hhcCcCccCCeEEEEEECH
Confidence 567889999999998 46754 48888887753
No 58
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=27.88 E-value=89 Score=26.25 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=39.7
Q ss_pred ceEeCCEEEEEECCC---CeEEEeCcccCCCCCCCCCCCCCCCCCcEEEecCCccEEEEcCCCCCCC---CCCeEEEEee
Q 030594 42 TFKVGDVLVFNYGGL---HKVDRVSESDYNNCASSNALESHDDGNTRINLKAPGTQYFICPTAGHCP---GGMKLAVTVV 115 (175)
Q Consensus 42 ~F~vGDsLvF~y~~~---HsV~~V~~~~Y~~C~~~~~~~~~s~G~~~v~l~~~G~~YFiC~v~~HC~---~GmKl~I~V~ 115 (175)
.+-+|-.++|+-++. |+-..-....-..+-+. ......++.+++|.|+-.|. .-|- ..|++.|.|.
T Consensus 142 ~lP~g~pV~~~ltS~DViHSF~VP~l~~K~DaiPG------~~n~~~~~~~~~G~y~g~Ca--E~CG~~Ha~M~~~V~v~ 213 (226)
T TIGR01433 142 AFPVNTPINFKITSNSVMNSFFIPQLGSQIYAMAG------MQTKLHLIANEPGVYDGISA--NYSGPGFSGMKFKAIAT 213 (226)
T ss_pred EEECCCEEEEEEEECchhhhhhhhhcCCeeecCCC------ceEEEEEEeCCCEEEEEEch--hhcCcCccCCeEEEEEE
Confidence 566777778877654 55433211100011111 01123578899999999998 4665 4589888887
Q ss_pred cC
Q 030594 116 AA 117 (175)
Q Consensus 116 ~~ 117 (175)
+.
T Consensus 214 ~~ 215 (226)
T TIGR01433 214 DR 215 (226)
T ss_pred CH
Confidence 53
No 59
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.74 E-value=90 Score=26.21 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=23.8
Q ss_pred EEEecCCccEEEEcCCCCCCCC---CCeEEEEeecC
Q 030594 85 RINLKAPGTQYFICPTAGHCPG---GMKLAVTVVAA 117 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~ 117 (175)
.++.+++|.||..|+. -|-. -|++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5677899999999984 6654 48888887653
No 60
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=27.26 E-value=41 Score=20.20 Aligned_cols=18 Identities=28% Similarity=0.840 Sum_probs=12.7
Q ss_pred cccccCCCceEeCCEEEE
Q 030594 34 YTSWVSGKTFKVGDVLVF 51 (175)
Q Consensus 34 Y~~Wa~~~~F~vGDsLvF 51 (175)
|..|..++.-..||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 456777777777887755
No 61
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=27.23 E-value=64 Score=25.38 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=18.1
Q ss_pred EEecCCCCCcCCCCccccc-CCCceEeCCEEEEE
Q 030594 20 YTVGDTSGWTQGFDYTSWV-SGKTFKVGDVLVFN 52 (175)
Q Consensus 20 ~~VGg~~GWt~~~~Y~~Wa-~~~~F~vGDsLvF~ 52 (175)
..|||+.|= .+..-|- ....|+.||.|+|.
T Consensus 41 ~kVaD~Tgs---I~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 41 CKVADETGS---INISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEecccce---EEEEEecCcCcccCCccEEEec
Confidence 478887651 1222333 25688899988765
No 62
>PRK09752 adhesin; Provisional
Probab=27.02 E-value=1.6e+02 Score=31.09 Aligned_cols=12 Identities=42% Similarity=0.398 Sum_probs=6.7
Q ss_pred eCCEEEEEECCC
Q 030594 45 VGDVLVFNYGGL 56 (175)
Q Consensus 45 vGDsLvF~y~~~ 56 (175)
..|.|+.+=...
T Consensus 837 ~TDrLvI~G~ts 848 (1250)
T PRK09752 837 VSDQLVLNGNTA 848 (1250)
T ss_pred CCceEEEecCCC
Confidence 346666665433
No 63
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=27.02 E-value=1.9e+02 Score=22.87 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=17.2
Q ss_pred CCceEeCCEEEEEECC--C---CeEEEe
Q 030594 40 GKTFKVGDVLVFNYGG--L---HKVDRV 62 (175)
Q Consensus 40 ~~~F~vGDsLvF~y~~--~---HsV~~V 62 (175)
...++.||.++|+.+. . |.|+.+
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v 85 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEI 85 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEE
Confidence 3578899999999865 2 666666
No 64
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=26.85 E-value=30 Score=25.55 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=27.5
Q ss_pred EEEecCCccEEEEcCCCCCCCCCCeEEEEeec
Q 030594 85 RINLKAPGTQYFICPTAGHCPGGMKLAVTVVA 116 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 116 (175)
++..+.+|.+.|=|-+..|=..||...|.|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 55778999999999999999999999999875
No 65
>PF08980 DUF1883: Domain of unknown function (DUF1883); InterPro: IPR015073 This family consist of hypothetical bacterial proteins. ; PDB: 2B1Y_A.
Probab=25.05 E-value=12 Score=27.76 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=17.0
Q ss_pred CceEeCCEEEEEECCCCeEEEeCcccCCC-CCCCCC---CCCCCCCCcEEEecCCccEEEEcCCCCCCCCCC-eEEEEee
Q 030594 41 KTFKVGDVLVFNYGGLHKVDRVSESDYNN-CASSNA---LESHDDGNTRINLKAPGTQYFICPTAGHCPGGM-KLAVTVV 115 (175)
Q Consensus 41 ~~F~vGDsLvF~y~~~HsV~~V~~~~Y~~-C~~~~~---~~~~s~G~~~v~l~~~G~~YFiC~v~~HC~~Gm-Kl~I~V~ 115 (175)
...+-||+++.+-+..-+|..++...|++ ++...- ...+..-+..|++-.+|..|.+=. .|+..|. +..|+|.
T Consensus 9 ~~~~~Gd~V~V~ls~~~nV~LMd~~Nf~~y~~g~~~~y~GG~~~~~Pa~i~VP~sG~W~vvID--~~g~~~~~~~si~v~ 86 (94)
T PF08980_consen 9 GHLKRGDTVVVRLSHQANVRLMDDSNFQRYKNGRRFKYIGGVAKRSPARITVPYSGHWNVVID--SHGQSGEVEHSISVI 86 (94)
T ss_dssp ----TT-------SSS-------HHHHHHHHHHTT---S-----SSS------SSS----------TTSSS---------
T ss_pred hccCCCCEEEEEeCCcccEEEcChhHhhhhccCCcceEEeeecccCceEEECCCCceEEEEEE--CCCCcEEEEEEEEec
Confidence 45678999999998668888887777764 333221 123344456778877888877644 4777764 5667776
No 66
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=24.64 E-value=1.1e+02 Score=25.77 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=23.8
Q ss_pred EEEecCCccEEEEcCCCCCCC---CCCeEEEEeecC
Q 030594 85 RINLKAPGTQYFICPTAGHCP---GGMKLAVTVVAA 117 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~---~GmKl~I~V~~~ 117 (175)
.++.+++|.||..|+. -|- ..|.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEECH
Confidence 5678899999999985 664 358888887653
No 67
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=24.35 E-value=1.1e+02 Score=25.32 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=25.4
Q ss_pred cEEEecCCccEEEEcCCCCCCCC---CCeEEEEeecC
Q 030594 84 TRINLKAPGTQYFICPTAGHCPG---GMKLAVTVVAA 117 (175)
Q Consensus 84 ~~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~ 117 (175)
..++.+++|.||-.|+. -|-. .|++.|.|.+.
T Consensus 172 ~~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 172 WYLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 36788999999999984 6754 59999988754
No 68
>PTZ00213 asparagine synthetase A; Provisional
Probab=24.01 E-value=80 Score=28.62 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=15.5
Q ss_pred cceEEEecCCCCCcCC---------CCcccccCCC
Q 030594 16 YAVEYTVGDTSGWTQG---------FDYTSWVSGK 41 (175)
Q Consensus 16 ~a~~~~VGg~~GWt~~---------~~Y~~Wa~~~ 41 (175)
..+.|+.| .||... +||++|.+..
T Consensus 196 ~gaVFi~~--IG~~L~~G~~Hd~RApDYDDW~t~~ 228 (348)
T PTZ00213 196 YGAVFLIG--IGCKLSSGDTHDLRAPDYDDWSSPV 228 (348)
T ss_pred hCcEEEEe--ccCcCCCCCcCCCCCCCcccccccc
Confidence 45566666 455553 5899999443
No 69
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.74 E-value=47 Score=30.13 Aligned_cols=15 Identities=47% Similarity=0.837 Sum_probs=12.7
Q ss_pred ceEeCCEEEEEECCC
Q 030594 42 TFKVGDVLVFNYGGL 56 (175)
Q Consensus 42 ~F~vGDsLvF~y~~~ 56 (175)
..+.||+|+|+|+..
T Consensus 134 ~aq~gD~LvfHYSGH 148 (362)
T KOG1546|consen 134 SAQPGDSLVFHYSGH 148 (362)
T ss_pred cCCCCCEEEEEecCC
Confidence 468899999999864
No 70
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=23.62 E-value=19 Score=22.55 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=25.1
Q ss_pred EecCCCCCcCCCCcccccCCCceEeCCEEEEEECCCCeE
Q 030594 21 TVGDTSGWTQGFDYTSWVSGKTFKVGDVLVFNYGGLHKV 59 (175)
Q Consensus 21 ~VGg~~GWt~~~~Y~~Wa~~~~F~vGDsLvF~y~~~HsV 59 (175)
.||.+.+=++|. +|+....++.||.|.+.+..+..+
T Consensus 2 kvg~s~~v~iPk---~~~~~l~l~~Gd~v~i~~~~~g~i 37 (47)
T PF04014_consen 2 KVGNSGQVTIPK---EIREKLGLKPGDEVEIEVEGDGKI 37 (47)
T ss_dssp EETTCSEEEE-H---HHHHHTTSSTTTEEEEEEETTSEE
T ss_pred EECCCceEECCH---HHHHHcCCCCCCEEEEEEeCCCEE
Confidence 455555555553 577777889999999999886433
No 71
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=23.09 E-value=4.3e+02 Score=21.80 Aligned_cols=22 Identities=9% Similarity=0.302 Sum_probs=16.7
Q ss_pred cCCccEEEEcCCCCCCCCCCeE
Q 030594 89 KAPGTQYFICPTAGHCPGGMKL 110 (175)
Q Consensus 89 ~~~G~~YFiC~v~~HC~~GmKl 110 (175)
+..+=.|..|.-.+||.+.-.+
T Consensus 71 n~s~C~W~~C~~~~~Cv~~stV 92 (186)
T PF05283_consen 71 NNSTCVWMECKGESYCVNNSTV 92 (186)
T ss_pred ccCceEeeecCCCCcccCCccc
Confidence 5567889999988999864433
No 72
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.99 E-value=1.1e+02 Score=25.60 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=23.9
Q ss_pred EEEecCCccEEEEcCCCCCCC---CCCeEEEEeecC
Q 030594 85 RINLKAPGTQYFICPTAGHCP---GGMKLAVTVVAA 117 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~---~GmKl~I~V~~~ 117 (175)
.+..+++|.||..|+. -|- ..|++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATPL 216 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeCH
Confidence 5678899999999985 564 458888887653
No 73
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.46 E-value=1.1e+02 Score=25.74 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=23.8
Q ss_pred EEEecCCccEEEEcCCCCCCCC---CCeEEEEeecC
Q 030594 85 RINLKAPGTQYFICPTAGHCPG---GMKLAVTVVAA 117 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~ 117 (175)
.++.+++|.||..|+. -|-. -|.+.|.|.+.
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEECH
Confidence 5678999999999985 6654 48888887653
No 74
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=21.62 E-value=52 Score=25.55 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=16.8
Q ss_pred cccCCCceEeCCEEEEEECC
Q 030594 36 SWVSGKTFKVGDVLVFNYGG 55 (175)
Q Consensus 36 ~Wa~~~~F~vGDsLvF~y~~ 55 (175)
-|++...+++||.|.|..-.
T Consensus 104 G~~~~~~i~vGd~v~~~~~~ 123 (126)
T COG1430 104 GWAARLGIKVGDRVEFRPLG 123 (126)
T ss_pred CchhhcCCccCCEEEecccC
Confidence 48888999999999997643
No 75
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=21.38 E-value=1.4e+02 Score=23.28 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=26.3
Q ss_pred EEEecCCccEEEEcCCCCCCCCCCeEEEEeecCCC
Q 030594 85 RINLKAPGTQYFICPTAGHCPGGMKLAVTVVAASP 119 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~~ 119 (175)
++++.. |..|-|.. ..|..||++...+.....
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 567775 99999975 799999999999887654
No 76
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=21.19 E-value=3.2e+02 Score=26.54 Aligned_cols=8 Identities=25% Similarity=0.094 Sum_probs=4.8
Q ss_pred ceEEEecC
Q 030594 17 AVEYTVGD 24 (175)
Q Consensus 17 a~~~~VGg 24 (175)
...+.||.
T Consensus 82 ~~i~AVG~ 89 (656)
T PRK06975 82 LPVAVVGP 89 (656)
T ss_pred CeEEEECH
Confidence 35567774
No 77
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=21.09 E-value=94 Score=27.77 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=23.0
Q ss_pred cceEEEecCCCCCcCC---------CCcccccCCCceEeCCEEEEEECCCCeEEEe
Q 030594 16 YAVEYTVGDTSGWTQG---------FDYTSWVSGKTFKVGDVLVFNYGGLHKVDRV 62 (175)
Q Consensus 16 ~a~~~~VGg~~GWt~~---------~~Y~~Wa~~~~F~vGDsLvF~y~~~HsV~~V 62 (175)
..+.|+.| .||... +||++|. --||.|+.+-.- ...+++
T Consensus 185 ~gaVFi~~--IG~~L~~g~~Hd~RapDYDDW~-----LNGDil~w~~~l-~~a~EL 232 (309)
T cd00645 185 HGAVFIIG--IGGKLSDGKKHDGRAPDYDDWT-----LNGDILVWNPVL-QRAFEL 232 (309)
T ss_pred hCcEEEEe--ccCcCCCCCcCCCCCCCCcCcc-----ccceEEEEchhc-Cceeee
Confidence 44566665 345543 5899999 558887543322 444444
No 78
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=21.03 E-value=70 Score=21.46 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.2
Q ss_pred cccccCCCceEeCCEEEEEEC
Q 030594 34 YTSWVSGKTFKVGDVLVFNYG 54 (175)
Q Consensus 34 Y~~Wa~~~~F~vGDsLvF~y~ 54 (175)
...|+...++++||.|.|...
T Consensus 28 ~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 28 ITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEecCCCcccCCCEEEEEEE
Confidence 567888999999999998874
No 79
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.65 E-value=1.4e+02 Score=25.71 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=24.0
Q ss_pred EEEecCCccEEEEcCCCCCCC---CCCeEEEEeecC
Q 030594 85 RINLKAPGTQYFICPTAGHCP---GGMKLAVTVVAA 117 (175)
Q Consensus 85 ~v~l~~~G~~YFiC~v~~HC~---~GmKl~I~V~~~ 117 (175)
.++.+++|.||-.|+. -|- ..|.+.|.|.+.
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEECH
Confidence 5678899999999984 665 458888887653
No 80
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=20.61 E-value=1.1e+02 Score=26.31 Aligned_cols=24 Identities=21% Similarity=0.602 Sum_probs=20.8
Q ss_pred cEEEecCCccEEEEcCCCCCCCCC
Q 030594 84 TRINLKAPGTQYFICPTAGHCPGG 107 (175)
Q Consensus 84 ~~v~l~~~G~~YFiC~v~~HC~~G 107 (175)
+.+.++.-|-+-|+|+.-+||+.-
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhH
Confidence 567788889999999999999864
No 81
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=20.30 E-value=73 Score=22.10 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=13.2
Q ss_pred ceEeCCEEEEEECCC
Q 030594 42 TFKVGDVLVFNYGGL 56 (175)
Q Consensus 42 ~F~vGDsLvF~y~~~ 56 (175)
.+++||.|.|.+..+
T Consensus 2 ~~~~Ge~v~~~~~~~ 16 (83)
T PF14326_consen 2 VYRVGERVRFRVTSN 16 (83)
T ss_pred cccCCCEEEEEEEeC
Confidence 588999999999866
No 82
>PRK11528 hypothetical protein; Provisional
Probab=20.07 E-value=1.3e+02 Score=25.92 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCCc-CCCCcccccCCCceEeC--------CEEEEEECCCCeEEEe
Q 030594 26 SGWT-QGFDYTSWVSGKTFKVG--------DVLVFNYGGLHKVDRV 62 (175)
Q Consensus 26 ~GWt-~~~~Y~~Wa~~~~F~vG--------DsLvF~y~~~HsV~~V 62 (175)
.+|. +..+|-+|.+....+.+ +.|.|++..+++...+
T Consensus 26 ~~w~dis~~yl~W~~~~e~~~~~~~~~~d~~ylelE~g~~~~wGDl 71 (254)
T PRK11528 26 GGFANISLNYLDWTSRTTEKSSDKSHKDDFGYLELEGGAGFSWGEL 71 (254)
T ss_pred ccccceeehhhhhhccccccccccCCcCCCcEEEEEccccCCeEeE
Confidence 3675 44578888887655432 2788888777666543
Done!