BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030595
         (175 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
           Repeat Domain Of Varp
          Length = 189

 Score =  119 bits (299), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 98/167 (58%), Gaps = 6/167 (3%)

Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
           ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   
Sbjct: 3   AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 62

Query: 65  YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDH 124
           Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF   L   +++   H
Sbjct: 63  YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKH---H 118

Query: 125 PE--EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169
            E   + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL
Sbjct: 119 SENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENL 165


>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin-
           Like Protein 1
          Length = 131

 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 1/126 (0%)

Query: 2   SQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN 61
           S  ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +
Sbjct: 6   SGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQD 65

Query: 62  GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYC 121
              Y  + D+   R     FL  +K  F + Y G +A TAP   +N EF   L   +++ 
Sbjct: 66  RIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTAPPYAMNSEFSSVLAAQLKHH 124

Query: 122 VDHPEE 127
              P  
Sbjct: 125 SSGPSS 130


>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
           Adaptin From Ap3
 pdb|4AFI|B Chain B, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
           Adaptin From Ap3
          Length = 173

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
           ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   
Sbjct: 55  AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 114

Query: 65  YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQY 120
           Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF   L   +++
Sbjct: 115 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKH 169


>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex
 pdb|2VX8|B Chain B, Vamp7 Longin Domain Hrb Peptide Complex
 pdb|2VX8|C Chain C, Vamp7 Longin Domain Hrb Peptide Complex
 pdb|2VX8|D Chain D, Vamp7 Longin Domain Hrb Peptide Complex
          Length = 169

 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 1/110 (0%)

Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
           ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   
Sbjct: 45  AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 104

Query: 65  YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKL 114
           Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF   L
Sbjct: 105 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVL 153


>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
           Complexed With The Snare Protein Sec22b
 pdb|2NUT|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
           Complexed With The Snare Protein Sec22b
          Length = 196

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 27  NFNSIAYQCLQKL-PASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERV 85
            + S A Q  +KL   S  + T    A TF+Y+++ G  Y V+ + +  +++  A+LE +
Sbjct: 33  QYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 92

Query: 86  KDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVM 145
             EF  ++ G K  T        EF   +++  +  +D       L  +  ++ +V+ +M
Sbjct: 93  HSEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIM 150

Query: 146 MENIEKVLDRGEKIELLVDKTENL 169
           + NIE+VL RGE +  L  K  NL
Sbjct: 151 VANIEEVLQRGEALSALDSKANNL 174


>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion
           Activity Of Longin Domain Snare Ykt6
          Length = 199

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)

Query: 57  YLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSK-----YGGGKAATAPANGLNKEFG 111
           Y+  +     V+AD     ++    LE+V DEF  +     +  G  AT     L+    
Sbjct: 70  YVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTALDGH-- 127

Query: 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 171
                L +Y   +P E   ++KV+A++ E K ++   +E +L+RGEK++ LV K+E L  
Sbjct: 128 -----LSRY--QNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGT 180

Query: 172 Q 172
           Q
Sbjct: 181 Q 181


>pdb|3EGD|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
           Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
           BOUND To The Transport Signal Sequence Of Vesicular
           Stomatitis Virus Glycoprotein
 pdb|3EGX|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
           Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
           Bound To The Transport Signal Sequence Of The Snare
           Protein Bet1
          Length = 157

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 27  NFNSIAYQCLQKL-PASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERV 85
            + S A Q  +KL   S  + T    A TF+Y+++ G  Y V+ + +  +++  A+LE +
Sbjct: 32  QYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 91

Query: 86  KDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVM 145
             EF  ++ G K  T        EF   +++  +  +D       L  +  ++ +V+ +M
Sbjct: 92  HSEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIM 149

Query: 146 MENIEKVL 153
           + NIE+VL
Sbjct: 150 VANIEEVL 157


>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex
          Length = 74

 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169
           K+  V+ QV EV  VM ENI KV++RGE+++ L DK+E+L
Sbjct: 9   KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESL 48


>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex
 pdb|3B5N|E Chain E, Structure Of The Yeast Plasma Membrane Snare Complex
 pdb|3B5N|I Chain I, Structure Of The Yeast Plasma Membrane Snare Complex
          Length = 61

 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 30/41 (73%)

Query: 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169
           S+ A+++A++ +  G+M +NI KV +RGE++  + DK +NL
Sbjct: 2   SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNL 42


>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex
          Length = 65

 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 30/40 (75%)

Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169
           ++  ++++V  VK +M +N+E++L RGE ++ L +KTE+L
Sbjct: 10  RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDL 49


>pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain
 pdb|1IFQ|B Chain B, Sec22b N-Terminal Domain
          Length = 138

 Score = 37.7 bits (86), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 27  NFNSIAYQCLQKL-PASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERV 85
            + S A Q  +KL   S  + T    A TF+Y+++ G  Y V+ + +  +++  A+LE +
Sbjct: 43  QYQSQAKQLFRKLNEQSPTRCTLEAGAXTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 102

Query: 86  KDEFVSKYG 94
             EF  ++G
Sbjct: 103 HSEFDEQHG 111


>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
          Length = 66

 Score = 35.4 bits (80), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
           +L + +AQV EV  +M  N++KVL+R +K+  L D+ + L 
Sbjct: 5   RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 45


>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare
           Complex
          Length = 63

 Score = 35.4 bits (80), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
           +L + +AQV EV  +M  N++KVL+R +K+  L D+ + L 
Sbjct: 5   RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 45


>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup C 1 2 1
 pdb|3HD7|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup C 1 2 1
 pdb|3IPD|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup I 21 21 21
 pdb|3IPD|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup I 21 21 21
          Length = 91

 Score = 35.0 bits (79), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
           + +L + +AQV EV  +M  N++KVL+R +K+  L D+ + L 
Sbjct: 4   MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 46


>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
 pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
 pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
          Length = 96

 Score = 35.0 bits (79), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
           +L + +AQV EV  +M  N++KVL+R +K+  L D+ + L 
Sbjct: 31  RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 71


>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure
          Length = 119

 Score = 35.0 bits (79), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
           +L + +AQV EV  +M  N++KVL+R +K+  L D+ + L 
Sbjct: 34  RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 74


>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
           From The Squid Loligo Pealei
          Length = 80

 Score = 35.0 bits (79), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
           +L + +AQV EV  +M  N++KVL+R  KI  L D+ + L 
Sbjct: 16  RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQ 56


>pdb|1ITQ|A Chain A, Human Renal Dipeptidase
 pdb|1ITQ|B Chain B, Human Renal Dipeptidase
 pdb|1ITU|A Chain A, Human Renal Dipeptidase Complexed With Cilastatin
 pdb|1ITU|B Chain B, Human Renal Dipeptidase Complexed With Cilastatin
          Length = 369

 Score = 31.6 bits (70), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 97  KAATAPANGLNKEFG--PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 154
           + A A A G   +F   P++ E ++    +P+ I++L +     +EVKG + +N+ +V +
Sbjct: 276 EVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFE 335

Query: 155 RGEKIELLVDKTENLHQQP 173
                   V++  NL Q P
Sbjct: 336 -------AVEQASNLTQAP 347


>pdb|3RK2|A Chain A, Truncated Snare Complex
 pdb|3RK2|E Chain E, Truncated Snare Complex
 pdb|3RK3|A Chain A, Truncated Snare Complex With Complexin
 pdb|3RL0|A Chain A, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|E Chain E, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|I Chain I, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|M Chain M, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|Q Chain Q, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|U Chain U, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|Y Chain Y, Truncated Snare Complex With Complexin (P1)
 pdb|3RL0|CC Chain c, Truncated Snare Complex With Complexin (P1)
          Length = 37

 Score = 31.2 bits (69), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159
           +L + +AQV EV  +M  N++KVL+R +K+
Sbjct: 8   RLQQTQAQVDEVVDIMRVNVDKVLERDQKL 37


>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
           Rickettsia Prowazekii
 pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
           Rickettsia Prowazekii
          Length = 482

 Score = 30.4 bits (67), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 37  QKLPASNNKFTYNCD-AHTFNYLVDNGYTYC------VVADESSG--RQIPMAFLERVKD 87
           Q +PA NN  TY  D +  ++ ++  G T+        +  E SG   QI  A LER++D
Sbjct: 180 QLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYA-LERIED 238

Query: 88  EFVSKYGGGKAATAPANGLNKEFGPKLK 115
                Y   +  TA   G+N + G  +K
Sbjct: 239 ALKKVYLLAQGGTAVGTGINSKIGFDIK 266


>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
 pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
 pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
          Length = 310

 Score = 30.0 bits (66), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 23/33 (69%)

Query: 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159
            + ++  ++++V  VK +M +N+E++L RGE +
Sbjct: 278 HMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310


>pdb|3FIE|C Chain C, Crystal Structure Of Clostridium Botulinum Neurotoxin
           Serotype F Catalytic Domain With An Inhibitor (Inh1)
 pdb|3FIE|D Chain D, Crystal Structure Of Clostridium Botulinum Neurotoxin
           Serotype F Catalytic Domain With An Inhibitor (Inh1)
          Length = 38

 Score = 28.5 bits (62), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDR 155
           +L + +AQV EV  +M  N++KVL+R
Sbjct: 10  RLQQTQAQVDEVVDIMRVNVDKVLER 35


>pdb|3FII|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin
           Serotype F Catalytic Domain With An Inhibitor (Inh2)
          Length = 33

 Score = 28.5 bits (62), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDR 155
           +L + +AQV EV  +M  N++KVL+R
Sbjct: 5   RLQQTQAQVDEVVDIMRVNVDKVLER 30


>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic
          Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse
          Hindgut Metagenome
 pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic
          Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse
          Hindgut Metagenome
          Length = 234

 Score = 26.9 bits (58), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 21 YTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMA 80
          +T F   F+    Q  +K     N   +NC    +N  + +G     + D+      P A
Sbjct: 21 FTHFGEGFDYYDSQLWEKADGWGNGGVFNCIWRAYNIELKDGILNLSITDDMPSSSKPYA 80

Query: 81 FLE-RVKDEF 89
            E R +D+F
Sbjct: 81 GAEYRTRDKF 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,217,939
Number of Sequences: 62578
Number of extensions: 213398
Number of successful extensions: 681
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 39
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)