Query 030595
Match_columns 175
No_of_seqs 127 out of 866
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 16:07:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 2.9E-54 6.3E-59 312.9 14.7 169 4-174 1-170 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 2.1E-35 4.6E-40 218.5 16.3 168 5-174 1-179 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 1.8E-34 3.8E-39 205.9 14.7 167 4-175 1-183 (198)
4 COG5143 SNC1 Synaptobrevin/VAM 99.9 6.6E-23 1.4E-27 150.1 12.5 164 6-174 3-174 (190)
5 PF13774 Longin: Regulated-SNA 99.9 2.4E-21 5.2E-26 126.8 11.2 81 31-112 1-82 (83)
6 KOG0860 Synaptobrevin/VAMP-lik 99.6 2.9E-15 6.2E-20 101.3 4.9 46 128-173 28-73 (116)
7 PF00957 Synaptobrevin: Synapt 99.4 1.1E-13 2.4E-18 91.5 4.4 47 128-174 2-48 (89)
8 PF04086 SRP-alpha_N: Signal r 95.4 0.046 9.9E-07 43.3 5.9 64 29-94 5-70 (279)
9 PF09426 Nyv1_N: Vacuolar R-SN 95.1 0.054 1.2E-06 37.9 4.8 60 28-87 42-110 (141)
10 KOG0781 Signal recognition par 93.6 0.26 5.6E-06 42.0 6.6 86 7-94 4-95 (587)
11 PF04099 Sybindin: Sybindin-li 93.6 1.4 3.1E-05 31.3 9.7 85 33-119 46-141 (142)
12 COG5143 SNC1 Synaptobrevin/VAM 90.6 0.077 1.7E-06 39.6 0.0 44 130-173 95-138 (190)
13 PF01217 Clat_adaptor_s: Clath 88.9 6.4 0.00014 27.7 13.3 88 5-94 1-96 (141)
14 KOG0938 Adaptor complexes medi 84.6 18 0.00039 29.7 10.0 85 8-94 6-93 (446)
15 PF04628 Sedlin_N: Sedlin, N-t 80.3 17 0.00037 25.3 8.2 108 10-119 1-131 (132)
16 smart00096 UTG Uteroglobin. 75.9 9.6 0.00021 23.7 4.6 42 114-155 21-62 (69)
17 PF06008 Laminin_I: Laminin Do 75.6 33 0.00072 26.9 8.9 79 76-171 156-234 (264)
18 cd00633 Secretoglobin Secretog 74.9 10 0.00022 23.1 4.7 43 112-154 17-59 (67)
19 PF01099 Uteroglobin: Uteroglo 74.3 7.3 0.00016 23.9 3.9 44 112-155 17-60 (67)
20 PF04799 Fzo_mitofusin: fzo-li 69.0 16 0.00035 26.9 5.3 43 129-171 109-151 (171)
21 PF10504 DUF2452: Protein of u 64.2 3.6 7.7E-05 29.9 1.0 55 29-83 65-126 (159)
22 KOG3230 Vacuolar assembly/sort 55.9 34 0.00074 25.9 4.9 22 135-156 132-153 (224)
23 PRK11546 zraP zinc resistance 55.9 71 0.0015 22.9 6.4 23 123-146 84-106 (143)
24 PF11675 DUF3271: Protein of u 53.4 64 0.0014 25.1 6.2 52 3-55 28-79 (249)
25 KOG4117 Heat shock factor bind 51.3 55 0.0012 20.0 6.0 19 156-174 47-65 (73)
26 KOG3369 Transport protein part 48.5 1.1E+02 0.0024 22.7 9.6 82 35-119 110-196 (199)
27 PF12277 DUF3618: Protein of u 47.3 52 0.0011 18.7 3.9 27 131-157 5-31 (49)
28 PF05739 SNARE: SNARE domain; 46.4 60 0.0013 19.0 5.9 40 129-168 4-43 (63)
29 PF05527 DUF758: Domain of unk 45.7 99 0.0021 23.2 6.1 77 71-157 109-185 (186)
30 PF03607 DCX: Doublecortin; I 45.7 33 0.00071 20.4 3.0 47 25-71 8-57 (60)
31 KOG1983 Tomosyn and related SN 45.1 9.8 0.00021 35.8 0.9 30 145-174 943-972 (993)
32 KOG2740 Clathrin-associated pr 44.4 98 0.0021 25.8 6.3 43 52-94 54-96 (418)
33 PF07897 DUF1675: Protein of u 42.4 27 0.00059 27.9 2.9 26 49-74 237-262 (284)
34 PHA01811 hypothetical protein 40.6 38 0.00082 20.6 2.6 17 45-61 6-22 (78)
35 PF06825 HSBP1: Heat shock fac 40.1 78 0.0017 18.6 3.9 18 156-173 34-51 (54)
36 PF04510 DUF577: Family of unk 39.7 87 0.0019 23.2 4.9 95 64-169 65-159 (174)
37 PHA03386 P10 fibrous body prot 39.2 72 0.0016 21.0 4.0 15 129-143 19-33 (94)
38 PF11074 DUF2779: Domain of un 39.0 1.2E+02 0.0026 21.2 5.4 81 52-147 27-117 (130)
39 KOG3368 Transport protein part 38.9 1.3E+02 0.0028 21.3 5.4 54 32-87 45-102 (140)
40 cd01617 DCX Ubiquitin-like dom 38.7 1E+02 0.0022 19.4 5.4 52 22-73 22-78 (80)
41 PF08858 IDEAL: IDEAL domain; 37.4 68 0.0015 17.1 3.4 18 141-158 10-27 (37)
42 COG5122 TRS23 Transport protei 35.9 1.5E+02 0.0032 20.5 9.6 73 43-118 57-131 (134)
43 PLN03223 Polycystin cation cha 35.8 96 0.0021 30.6 5.6 44 128-171 1580-1623(1634)
44 PF04048 Sec8_exocyst: Sec8 ex 35.8 1.6E+02 0.0034 20.8 6.1 39 129-167 79-117 (142)
45 PRK14891 50S ribosomal protein 34.0 47 0.001 23.3 2.6 23 38-60 13-35 (131)
46 PRK00807 50S ribosomal protein 32.0 65 0.0014 18.7 2.7 22 38-59 10-31 (52)
47 PF03164 Mon1: Trafficking pro 30.0 3.4E+02 0.0074 22.9 12.7 67 28-94 37-104 (415)
48 PF00957 Synaptobrevin: Synapt 29.7 1.3E+02 0.0029 19.0 4.2 45 129-173 10-54 (89)
49 PF02520 DUF148: Domain of unk 29.5 1.8E+02 0.0038 19.4 6.8 61 84-155 2-62 (113)
50 cd00472 Ribosomal_L24e_L24 Rib 29.0 76 0.0016 18.7 2.6 22 38-59 12-33 (54)
51 PF00755 Carn_acyltransf: Chol 28.7 2.3E+02 0.0049 25.1 6.7 40 51-90 547-587 (591)
52 PF12325 TMF_TATA_bd: TATA ele 28.4 83 0.0018 21.8 3.2 26 128-153 95-120 (120)
53 KOG0811 SNARE protein PEP12/VA 28.0 1.6E+02 0.0034 23.5 5.0 43 129-171 180-222 (269)
54 PF12579 DUF3755: Protein of u 27.5 51 0.0011 17.5 1.6 19 128-146 16-34 (35)
55 PF05659 RPW8: Arabidopsis bro 27.5 96 0.0021 22.2 3.5 31 129-159 51-81 (147)
56 PF03310 Cauli_DNA-bind: Cauli 27.2 1.8E+02 0.0038 20.2 4.5 8 147-154 48-55 (121)
57 PF10112 Halogen_Hydrol: 5-bro 26.5 1.8E+02 0.0038 21.6 5.0 44 112-155 136-182 (199)
58 PF12732 YtxH: YtxH-like prote 26.5 1.6E+02 0.0035 18.0 5.7 8 162-169 64-71 (74)
59 PF13040 DUF3901: Protein of u 26.4 1.2E+02 0.0027 16.6 3.2 25 143-167 10-34 (40)
60 PF12352 V-SNARE_C: Snare regi 26.4 1.5E+02 0.0032 17.6 5.5 43 128-170 7-49 (66)
61 COG0776 HimA Bacterial nucleoi 26.3 72 0.0016 21.1 2.4 26 135-160 19-44 (94)
62 PF13077 DUF3909: Protein of u 26.2 1.1E+02 0.0023 19.8 3.1 35 50-84 71-108 (108)
63 smart00397 t_SNARE Helical reg 25.9 1.4E+02 0.003 17.1 5.5 41 129-169 12-52 (66)
64 KOG4515 Uncharacterized conser 25.9 69 0.0015 24.0 2.5 37 130-167 159-195 (217)
65 PF13228 DUF4037: Domain of un 25.7 2E+02 0.0044 19.0 6.1 56 108-168 23-78 (100)
66 cd07634 BAR_GAP10-like The Bin 25.0 2.7E+02 0.0059 21.2 5.7 72 78-154 14-95 (207)
67 cd00193 t_SNARE Soluble NSF (N 24.8 1.4E+02 0.0031 16.8 5.6 40 129-168 6-45 (60)
68 PF05542 DUF760: Protein of un 24.2 73 0.0016 20.5 2.2 18 139-156 24-41 (86)
69 TIGR01478 STEVOR variant surfa 24.1 85 0.0018 25.2 2.9 23 129-151 103-125 (295)
70 cd02678 MIT_VPS4 MIT: domain c 23.8 1.3E+02 0.0028 18.5 3.2 28 140-167 47-74 (75)
71 PF11221 Med21: Subunit 21 of 23.4 1.6E+02 0.0034 20.8 4.0 32 129-161 3-34 (144)
72 KOG2866 Uncharacterized conser 23.4 2.7E+02 0.0058 23.1 5.6 43 128-170 88-130 (349)
73 PF11598 COMP: Cartilage oligo 22.3 1.6E+02 0.0035 16.6 3.8 24 129-152 8-31 (45)
74 KOG0810 SNARE protein Syntaxin 22.1 4.3E+02 0.0093 21.4 7.1 38 129-166 206-243 (297)
75 PF06103 DUF948: Bacterial pro 22.0 2.2E+02 0.0048 18.0 5.1 14 155-168 66-79 (90)
76 PHA03011 hypothetical protein; 21.8 2.6E+02 0.0057 18.8 6.4 57 111-170 63-119 (120)
77 PTZ00370 STEVOR; Provisional 21.6 1.1E+02 0.0023 24.7 2.9 23 129-151 102-124 (296)
78 PRK10753 transcriptional regul 21.5 99 0.0021 19.9 2.4 26 135-160 18-43 (90)
79 PHA02557 22 prohead core prote 21.1 3E+02 0.0066 21.9 5.3 94 78-172 89-190 (271)
80 PHA02979 hypothetical protein; 20.6 1.8E+02 0.0038 20.0 3.4 30 45-74 61-90 (140)
81 KOG0972 Huntingtin interacting 20.5 2.5E+02 0.0055 22.8 4.8 16 78-93 246-261 (384)
82 cd07636 BAR_GRAF The Bin/Amphi 20.0 4E+02 0.0088 20.3 6.8 47 108-154 40-95 (207)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-54 Score=312.85 Aligned_cols=169 Identities=73% Similarity=1.123 Sum_probs=162.5
Q ss_pred ccEEEEEEEcCCeeeeeeccCCCCHHHHHHHHHccCCCC-CCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 030595 4 KSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (175)
Q Consensus 4 ~~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~ki~~~-~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~af~fL 82 (175)
|+|+|++||||++|||||++.+|||..++..+|+|+|++ ++|.+|.+|+|+|||+++||++|+|+++.+.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 689999999999999999999999999999999999998 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHH
Q 030595 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162 (175)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L 162 (175)
++|++.|.+.|++. ++++.+|+++.+|++.|++.|++|.++|. .|++.+++.+++|||+||.+|||++|+|||+||.|
T Consensus 81 e~Ik~~F~k~YG~~-a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 81 ERIKEDFKKRYGGG-AHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred HHHHHHHHHHhccc-hhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 99999999999744 78888999999999999999999988888 69999999999999999999999999999999999
Q ss_pred HHhhHhhhcCCC
Q 030595 163 VDKTENLHQQPF 174 (175)
Q Consensus 163 ~~ks~~L~~~s~ 174 (175)
++||++|+.+|.
T Consensus 159 VdKTenl~~~s~ 170 (217)
T KOG0859|consen 159 VDKTENLRSKSF 170 (217)
T ss_pred echhhhhhhhhH
Confidence 999999998763
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-35 Score=218.53 Aligned_cols=168 Identities=24% Similarity=0.448 Sum_probs=152.7
Q ss_pred cEEEEEEEcC--Ceeeeeecc---CCCC----HHHHHHHHHccCCCC-CCeeEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 030595 5 SLIYAFVARG--NVVLAEYTE---FSGN----FNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (175)
Q Consensus 5 ~I~Ya~Iar~--~~iLae~~~---~~~~----~~~~~~~il~ki~~~-~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~ 74 (175)
||++++|+|. +.|||...+ .+++ +.+.++.+++++.+. ++|++++.+.|.|||++++++||+|+||..||
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP 80 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP 80 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence 6899999995 599998765 2233 467899999999998 88999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhCCCCCC-CCCCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 030595 75 RQIPMAFLERVKDEFVSKYGGGKAA-TAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVL 153 (175)
Q Consensus 75 ~~~af~fL~~i~~~F~~~~~~~~~~-~~~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il 153 (175)
+++||.||+++.++|.+.++..... ..+||++ .+|++.|++..++| +|++.++++.++++++.+|+.+|.+||+++|
T Consensus 81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~y-nd~r~~~n~~~~n~el~~v~~im~~niedvl 158 (216)
T KOG0862|consen 81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRY-NDTRSQRNLLKLNQELQDVQRIMVENLEDVL 158 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999855443 5789999 99999999999999 7888789999999999999999999999999
Q ss_pred HhhhhhHHHHHhhHhhhcCCC
Q 030595 154 DRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 154 ~Rge~l~~L~~ks~~L~~~s~ 174 (175)
.|||.|+.|..++.+|+..|+
T Consensus 159 ~rg~~l~~l~~~~s~l~~~s~ 179 (216)
T KOG0862|consen 159 QRGEVLNALSSMASELSSESR 179 (216)
T ss_pred hhchHHHhhhhhhhcccHHHH
Confidence 999999999999999988764
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=205.91 Aligned_cols=167 Identities=23% Similarity=0.346 Sum_probs=140.9
Q ss_pred ccEEEEEEEcCC----eeeeeeccCC-------CCHH----HHHHHHHccCCCCCCeeEEEeCCeEEEE-EEeCCEEEEE
Q 030595 4 KSLIYAFVARGN----VVLAEYTEFS-------GNFN----SIAYQCLQKLPASNNKFTYNCDAHTFNY-LVDNGYTYCV 67 (175)
Q Consensus 4 ~~I~Ya~Iar~~----~iLae~~~~~-------~~~~----~~~~~il~ki~~~~~k~~~~~~~~~~h~-~~~~~~~~~~ 67 (175)
|.|.+..|-+.+ .+|+.-++-+ ++.. -+++.+.+|.+|+ .|++++++.|.+|. ...+|+++++
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~g-~rqsvk~~~Y~~h~yvrndgL~~V~ 79 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGPG-QRQSVKHEEYLVHVYVRNDGLCGVL 79 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCcc-cccccccceeEEEEEEecCCeeEEE
Confidence 456677777652 4666554322 3333 3789999999998 58999999999995 5557999999
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHH
Q 030595 68 VADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMME 147 (175)
Q Consensus 68 it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ 147 (175)
++|.+||.|+||.+|.+|.++|....++.+|+...+.. ..| |.|...+.+| +||.+.|++.++|++|||+|.||++
T Consensus 80 ~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~--~~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLhk 155 (198)
T KOG0861|consen 80 IADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETAD--LSY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILHK 155 (198)
T ss_pred EecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcC--CCc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888898443333 343 8999999999 9999999999999999999999999
Q ss_pred hHHHHHHhhhhhHHHHHhhHhhhcCCCC
Q 030595 148 NIEKVLDRGEKIELLVDKTENLHQQPFV 175 (175)
Q Consensus 148 ni~~il~Rge~l~~L~~ks~~L~~~s~~ 175 (175)
+|+.+|+||||||+|++||++|+.+||+
T Consensus 156 TiesVL~RgEKLDdLV~KSe~Ls~qSKm 183 (198)
T KOG0861|consen 156 TIESVLERGEKLDDLVSKSENLSLQSKM 183 (198)
T ss_pred HHHHHHHccchHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999874
No 4
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.90 E-value=6.6e-23 Score=150.06 Aligned_cols=164 Identities=23% Similarity=0.306 Sum_probs=127.9
Q ss_pred EEEEEEEcCC--eeeeeec-cCCCCH--HHHHHHHHccCCCC-CCeeEEEeCCeEEEEEEeC-CEEEEEEecCCCCcchH
Q 030595 6 LIYAFVARGN--VVLAEYT-EFSGNF--NSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDN-GYTYCVVADESSGRQIP 78 (175)
Q Consensus 6 I~Ya~Iar~~--~iLae~~-~~~~~~--~~~~~~il~ki~~~-~~k~~~~~~~~~~h~~~~~-~~~~~~it~~~~~~~~a 78 (175)
++|..+..+. .+|++-. ..+..| ...+..+|.++.|. .++.+++.++|.|||...+ |++|+|+|+.+||.+.|
T Consensus 3 s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~la 82 (190)
T COG5143 3 SISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNKLA 82 (190)
T ss_pred eEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchhhh
Confidence 4555565553 3444432 222233 24677888887766 4567788889999998765 99999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCC-CCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 030595 79 MAFLERVKDEFVSKYGGGKAATA-PANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157 (175)
Q Consensus 79 f~fL~~i~~~F~~~~~~~~~~~~-~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~Rge 157 (175)
|..++.+..+|.......+|... .++.. ..|++.+++ . | ++|...|++.+++.+++||+.+|.+||+++|.|||
T Consensus 83 ~~~~~~~~~~~~~s~~~~~~~d~~~~~~~-~~~d~~~e~--~-y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~e 157 (190)
T COG5143 83 YGYLNSIATEFLKSSALEQLIDDTVGIMR-VNIDKVIEK--G-Y-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDE 157 (190)
T ss_pred hHHHHhhccHhhhhhhHhhcccCccchhh-hhHHHHHHh--h-c-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999887765555432 33343 466666666 2 7 89999999999999999999999999999999999
Q ss_pred hhHHHHHhhHhhhcCCC
Q 030595 158 KIELLVDKTENLHQQPF 174 (175)
Q Consensus 158 ~l~~L~~ks~~L~~~s~ 174 (175)
+|+.|+++|+.|..+|+
T Consensus 158 kl~~lv~~ss~L~~~s~ 174 (190)
T COG5143 158 KLDLLVDLSSILLLSSK 174 (190)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999987764
No 5
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.87 E-value=2.4e-21 Score=126.79 Aligned_cols=81 Identities=33% Similarity=0.705 Sum_probs=73.5
Q ss_pred HHHHHHccCCCCC-CeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhhCCCCCCCCCCCCcccc
Q 030595 31 IAYQCLQKLPASN-NKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKE 109 (175)
Q Consensus 31 ~~~~il~ki~~~~-~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~ 109 (175)
++++||+++++.+ +|.+++.++|.|||+.++|++|+|||+++||+++||.||++|+++|.++|+..++.++.++++ .+
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~ 79 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE 79 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence 5899999999765 899999999999999999999999999999999999999999999999998677888889998 88
Q ss_pred hhH
Q 030595 110 FGP 112 (175)
Q Consensus 110 F~~ 112 (175)
|++
T Consensus 80 F~~ 82 (83)
T PF13774_consen 80 FDS 82 (83)
T ss_dssp HHH
T ss_pred cCC
Confidence 875
No 6
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.9e-15 Score=101.27 Aligned_cols=46 Identities=46% Similarity=0.673 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCC
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQP 173 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s 173 (175)
++++.++|.+|+||++||++||+|+|+|||||++|++||+.|++.|
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~a 73 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGA 73 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999876
No 7
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.44 E-value=1.1e-13 Score=91.49 Aligned_cols=47 Identities=51% Similarity=0.713 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
+|++.++++++++|+++|.+||+++++|||+|++|++||++|+.+|.
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~ 48 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAK 48 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhH
Confidence 48999999999999999999999999999999999999999998763
No 8
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=95.37 E-value=0.046 Score=43.34 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=40.7
Q ss_pred HHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEecCCCCcchHHHHHHHHHHHHHhhhC
Q 030595 29 NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (175)
Q Consensus 29 ~~~~~~il~ki~~~~~k~~~~~~~~~~h~~~~~--~~~~~~it~~~~~~~~af~fL~~i~~~F~~~~~ 94 (175)
..+++.||-.=.. ...+|++++|.++|...| +++||+|-..-.+-..+=.||+.|+..|...|.
T Consensus 5 n~LI~~vlleeR~--~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~ 70 (279)
T PF04086_consen 5 NALIRDVLLEERS--GNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYK 70 (279)
T ss_dssp HHHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhheeecc--CCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHh
Confidence 4566666643222 235689999999987775 799999998888877777899999999999986
No 9
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=95.11 E-value=0.054 Score=37.87 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=38.3
Q ss_pred HHHH-HHHHHccCCCCC-C---eeEEE-eCCeEEEEEE---eCCEEEEEEecCCCCcchHHHHHHHHHH
Q 030595 28 FNSI-AYQCLQKLPASN-N---KFTYN-CDAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (175)
Q Consensus 28 ~~~~-~~~il~ki~~~~-~---k~~~~-~~~~~~h~~~---~~~~~~~~it~~~~~~~~af~fL~~i~~ 87 (175)
|..+ -..++.++.|-. + |++.. .|||-++|.. +++-+++|++..+.|+-++...|.+++.
T Consensus 42 FH~Li~dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 42 FHKLIHDMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp HHHHHHHTTGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred HHHHHhhccccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 4443 345667766552 2 34443 6899988876 4689999999999999999999999974
No 10
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=0.26 Score=42.03 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=63.4
Q ss_pred EEEEEEcCCeeeeeeccCCCCHHH----HHHHHHccCCCCCCeeEEEeCCeEEEEEEe--CCEEEEEEecCCCCcchHHH
Q 030595 7 IYAFVARGNVVLAEYTEFSGNFNS----IAYQCLQKLPASNNKFTYNCDAHTFNYLVD--NGYTYCVVADESSGRQIPMA 80 (175)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~~~~~----~~~~il~ki~~~~~k~~~~~~~~~~h~~~~--~~~~~~~it~~~~~~~~af~ 80 (175)
.++.+.+|..+|+-|.....+|.. +++.+|-.=.. +-.+++.+.|+.-|-.+ -+++|+|+-..-..-..+=.
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~--~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~ 81 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERG--GVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDK 81 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhc--CcccCchhheeEeeeecCCccEEEEEEEeccchhhhHHH
Confidence 578899999999999876666644 44444432111 12236778888777554 47999999988877778888
Q ss_pred HHHHHHHHHHhhhC
Q 030595 81 FLERVKDEFVSKYG 94 (175)
Q Consensus 81 fL~~i~~~F~~~~~ 94 (175)
||+++.+.|...|.
T Consensus 82 ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 82 LLNDVLNLFREKYD 95 (587)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999885
No 11
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=93.64 E-value=1.4 Score=31.34 Aligned_cols=85 Identities=12% Similarity=0.150 Sum_probs=47.3
Q ss_pred HHHHccCCCC---------CCeeEEEeCCeEEEEEE-eCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhhCCCCC-CCC
Q 030595 33 YQCLQKLPAS---------NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKA-ATA 101 (175)
Q Consensus 33 ~~il~ki~~~---------~~k~~~~~~~~~~h~~~-~~~~~~~~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~-~~~ 101 (175)
+.+..++.|. .+-.+++.+.|..|+.. -.|+-|+++||+..+. ..=.++..+...|..-.-.+.. ...
T Consensus 46 ~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KNPfy~~~ 124 (142)
T PF04099_consen 46 KAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKNPFYSLE 124 (142)
T ss_dssp HHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-TTS-TT
T ss_pred HHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 5566677762 34568889999999875 4899999999999863 3444566666666543322221 111
Q ss_pred CCCCcccchhHHHHHHhh
Q 030595 102 PANGLNKEFGPKLKELMQ 119 (175)
Q Consensus 102 ~~~~l~~~F~~~l~~~~~ 119 (175)
-|-. +..|+..|.++++
T Consensus 125 ~pI~-~~lF~~~l~~~~~ 141 (142)
T PF04099_consen 125 MPIR-CELFDTKLDQYVK 141 (142)
T ss_dssp S-----HHHHHHHHHHHH
T ss_pred CcEe-hHHHHHHHHHHHh
Confidence 1222 2566666666553
No 12
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=90.57 E-value=0.077 Score=39.58 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCC
Q 030595 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQP 173 (175)
Q Consensus 130 ~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s 173 (175)
+...++..+++++.+|..|+++.++||++...+.++.+.|+.+.
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el 138 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQEL 138 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHH
Confidence 56778889999999999999999999999999999988887654
No 13
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=88.86 E-value=6.4 Score=27.68 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=60.2
Q ss_pred cEEEEEEEcC--Ceeeeeecc-CCCC-----HHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcc
Q 030595 5 SLIYAFVARG--NVVLAEYTE-FSGN-----FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQ 76 (175)
Q Consensus 5 ~I~Ya~Iar~--~~iLae~~~-~~~~-----~~~~~~~il~ki~~~~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~ 76 (175)
||...+|.-. ..+++-|=. .+.. +....+.+..+-+.. --.+..+++.+-|...+++.++++++.+...-
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel 78 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQ--SPIFEHDNYRIVYKRYSDLYFVVVGDENENEL 78 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSS--TSEEEETTEEEEEEEETTEEEEEEESSTSBHH
T ss_pred CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhccccc--ceeeecccceeeeEeeccEEEEEEeecccchH
Confidence 4566666553 466776632 2211 333444444442221 23567889888888889999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhC
Q 030595 77 IPMAFLERVKDEFVSKYG 94 (175)
Q Consensus 77 ~af~fL~~i~~~F~~~~~ 94 (175)
..+.||..+.+.+..-++
T Consensus 79 ~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 79 LLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhhhhhhc
Confidence 999999999988887664
No 14
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.56 E-value=18 Score=29.73 Aligned_cols=85 Identities=12% Similarity=0.248 Sum_probs=59.8
Q ss_pred EEEEEcCCeeeeeec--cCCCCHHHHHHH-HHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHH
Q 030595 8 YAFVARGNVVLAEYT--EFSGNFNSIAYQ-CLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLER 84 (175)
Q Consensus 8 Ya~Iar~~~iLae~~--~~~~~~~~~~~~-il~ki~~~~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~af~fL~~ 84 (175)
|..=.||+++++-.= +-.++..++-|- ++....... -..+.++-+|||...+++-.++||..+....+.|.||.+
T Consensus 6 fi~n~rGevlink~fr~dlkrs~~diFRv~vi~n~d~r~--PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eFl~k 83 (446)
T KOG0938|consen 6 FIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINNLDVRS--PVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEFLYK 83 (446)
T ss_pred EEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhccccCC--CeeEecceeEEEEeeccEEEEEEecCCCchhhHHHHHHH
Confidence 334468888887642 334555554433 232222211 145688899999999999999999999999999999999
Q ss_pred HHHHHHhhhC
Q 030595 85 VKDEFVSKYG 94 (175)
Q Consensus 85 i~~~F~~~~~ 94 (175)
+.+-+..-++
T Consensus 84 l~avm~aYfg 93 (446)
T KOG0938|consen 84 LDAVMNAYFG 93 (446)
T ss_pred HHHHHHHHhc
Confidence 9888876554
No 15
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=80.29 E-value=17 Score=25.33 Aligned_cols=108 Identities=12% Similarity=0.192 Sum_probs=57.9
Q ss_pred EEEcCCeeeeeeccC--CC-C-------HHH---HHHHHHccCC-C-C-C--CeeEEEeCCeE-EEEEEeCCEEEEEEec
Q 030595 10 FVARGNVVLAEYTEF--SG-N-------FNS---IAYQCLQKLP-A-S-N--NKFTYNCDAHT-FNYLVDNGYTYCVVAD 70 (175)
Q Consensus 10 ~Iar~~~iLae~~~~--~~-~-------~~~---~~~~il~ki~-~-~-~--~k~~~~~~~~~-~h~~~~~~~~~~~it~ 70 (175)
.|++.+.+|-+++.. .. . +.- .+..+++..- . . + -+.....+++. |-|+...++=|+.+++
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~ 80 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD 80 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence 478888888887432 21 1 222 3344554322 2 1 1 14456677875 4587778888888887
Q ss_pred ---CCCCcchHHHHHHHHHHHHHhhhCCCCCCCC-CCCCcccchhHHHHHHhh
Q 030595 71 ---ESSGRQIPMAFLERVKDEFVSKYGGGKAATA-PANGLNKEFGPKLKELMQ 119 (175)
Q Consensus 71 ---~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~-~~~~l~~~F~~~l~~~~~ 119 (175)
........-.|+.+++..|.+..- +.+... .+-. ...|+..++.+.+
T Consensus 81 ~~~~~~~d~~ik~fF~~vh~~Y~~~~~-NPF~~~~~~I~-S~~Fd~~v~~l~~ 131 (132)
T PF04628_consen 81 MSDNSIRDEDIKQFFKEVHELYVKALC-NPFYQPGTPIK-SPKFDSRVRALAK 131 (132)
T ss_dssp GGG-S--HHHHHHHHHHHHHHHHHHHT-STTCGCT-HHH-HHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHcc-CCCCCCCCCcC-CHHHHHHHHHHhc
Confidence 456667788899999999988764 333221 1111 2456666655543
No 16
>smart00096 UTG Uteroglobin.
Probab=75.87 E-value=9.6 Score=23.72 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=33.0
Q ss_pred HHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 030595 114 LKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (175)
Q Consensus 114 l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~R 155 (175)
-...++.|+.+|.-.+...++++-+|....-=+.||-++|++
T Consensus 21 Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 21 YEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345567787888888999999999998777777777777764
No 17
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=75.57 E-value=33 Score=26.85 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 030595 76 QIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (175)
Q Consensus 76 ~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~R 155 (175)
..|..+|++|.+.|.+.... +....+.|.+.+..| .+++..++.-|++..+...+.-+.--.+
T Consensus 156 ~~A~~LL~~v~~~~~~~~~~-----------~~~l~~~i~~~L~~~------~~kL~Dl~~~l~eA~~~~~ea~~ln~~n 218 (264)
T PF06008_consen 156 KEAEDLLSRVQKWFQKPQQE-----------NESLAEAIRDDLNDY------NAKLQDLRDLLNEAQNKTREAEDLNRAN 218 (264)
T ss_pred HHHHHHHHHHHHHHhhHHHh-----------hHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666665555433211 122234555555555 1566666666666666666655555666
Q ss_pred hhhhHHHHHhhHhhhc
Q 030595 156 GEKIELLVDKTENLHQ 171 (175)
Q Consensus 156 ge~l~~L~~ks~~L~~ 171 (175)
...|+++..|-++|+.
T Consensus 219 ~~~l~~~~~k~~~l~~ 234 (264)
T PF06008_consen 219 QKNLEDLEKKKQELSE 234 (264)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655543
No 18
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=74.93 E-value=10 Score=23.13 Aligned_cols=43 Identities=28% Similarity=0.299 Sum_probs=34.3
Q ss_pred HHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 030595 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 154 (175)
Q Consensus 112 ~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~ 154 (175)
..+...++.|+.+|.......++|+-+++...-=+.|+-++|+
T Consensus 17 ~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 17 EEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 4567777888788888899999999999887777777777665
No 19
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=74.30 E-value=7.3 Score=23.87 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=32.6
Q ss_pred HHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 030595 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (175)
Q Consensus 112 ~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~R 155 (175)
+..+..++.|+.+|.......++++-++....-=+.||.++|++
T Consensus 17 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 17 EEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667778887777778999999999998888888888888764
No 20
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=69.05 E-value=16 Score=26.91 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhc
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 171 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~ 171 (175)
.-...+..++++++.-|.+.|+++-..=++||.+..++..|..
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~Lrn 151 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRN 151 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999988864
No 21
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=64.15 E-value=3.6 Score=29.89 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=36.5
Q ss_pred HHHHHHHHccCCCC----CCeeEEEeC-CeEEE-EEEeCCEEEEEEecCC-CCcchHHHHHH
Q 030595 29 NSIAYQCLQKLPAS----NNKFTYNCD-AHTFN-YLVDNGYTYCVVADES-SGRQIPMAFLE 83 (175)
Q Consensus 29 ~~~~~~il~ki~~~----~~k~~~~~~-~~~~h-~~~~~~~~~~~it~~~-~~~~~af~fL~ 83 (175)
...++.|+++...+ +.++.|+-- |.+|| |..++|-.|+.+-.|+ .+..+++.||.
T Consensus 65 q~QA~~ile~~~~~~~l~~A~cnF~pipG~iYhLY~r~~G~~ylSmisP~EWg~~~p~~flG 126 (159)
T PF10504_consen 65 QEQARKILEEAERNEELHHAKCNFEPIPGQIYHLYRRENGQDYLSMISPEEWGGSCPHEFLG 126 (159)
T ss_pred HHHHHHHHHHHHHhHHHhhcccCceecCCCEEEEEECCCCCEEEEeeCHHHhCCCCCcCEEE
Confidence 45678888877765 467777743 77777 6777887777777654 45555554443
No 22
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.91 E-value=34 Score=25.85 Aligned_cols=22 Identities=14% Similarity=0.207 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhh
Q 030595 135 KAQVSEVKGVMMENIEKVLDRG 156 (175)
Q Consensus 135 ~~~l~~v~~im~~ni~~il~Rg 156 (175)
...++-+.+.|.++||..|+..
T Consensus 132 se~Mdm~~Emm~daIDdal~~~ 153 (224)
T KOG3230|consen 132 SEIMDMKEEMMDDAIDDALGDD 153 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 3456778899999999999643
No 23
>PRK11546 zraP zinc resistance protein; Provisional
Probab=55.86 E-value=71 Score=22.88 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=17.0
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHH
Q 030595 123 DHPEEISKLAKVKAQVSEVKGVMM 146 (175)
Q Consensus 123 ~~~~~~d~l~~i~~~l~~v~~im~ 146 (175)
+.|.. .++.++.+||.+++.-|.
T Consensus 84 ~~pD~-~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 84 NPPDS-SKINAVAKEMENLRQSLD 106 (143)
T ss_pred CCCCH-HHHHHHHHHHHHHHHHHH
Confidence 34444 789999999999887553
No 24
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=53.44 E-value=64 Score=25.11 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=39.7
Q ss_pred CccEEEEEEEcCCeeeeeeccCCCCHHHHHHHHHccCCCCCCeeEEEeCCeEE
Q 030595 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTF 55 (175)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~ki~~~~~k~~~~~~~~~~ 55 (175)
+.+|-|..|+.-+..+.........+-.++..++..-..+ .+..++.++|.|
T Consensus 28 pk~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eSeN-~Kyayeg~nYHw 79 (249)
T PF11675_consen 28 PKPIAYISVAQPTATFEHDEKKHTKYLDIINDILRDESEN-IKYAYEGGNYHW 79 (249)
T ss_pred CCceeEEeccCceEEEeecCccchhHHHHHHHHHhccccc-cceeeeCCceEE
Confidence 5689999999987666666555666888999999877775 577777777655
No 25
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=51.32 E-value=55 Score=20.00 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=11.2
Q ss_pred hhhhHHHHHhhHhhhcCCC
Q 030595 156 GEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 156 ge~l~~L~~ks~~L~~~s~ 174 (175)
+.++|+|+..-.+|-.++-
T Consensus 47 ~~riDDLEKnIaDLm~qag 65 (73)
T KOG4117|consen 47 SSRIDDLEKNIADLMTQAG 65 (73)
T ss_pred hhhhHHHHHHHHHHHHHcc
Confidence 4556666666666655543
No 26
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.47 E-value=1.1e+02 Score=22.74 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=49.2
Q ss_pred HHccCCCC---CCeeEEEeCCeEEEEEE-eCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhhCCCCCCCC-CCCCcccc
Q 030595 35 CLQKLPAS---NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATA-PANGLNKE 109 (175)
Q Consensus 35 il~ki~~~---~~k~~~~~~~~~~h~~~-~~~~~~~~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~-~~~~l~~~ 109 (175)
+..++.|. .+....+.+.+..|+.. -.|+-|++|+++.. ..|=.+|..|...|..-.-.+.+-+. -|-- ...
T Consensus 110 I~~qlsp~~ksSGie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYsDyvlKNPfYSlEMPIR-c~l 186 (199)
T KOG3369|consen 110 ISTQLSPEPKSSGIEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYSDYVLKNPFYSLEMPIR-CEL 186 (199)
T ss_pred eeeccCCCCCCCceEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHHHHhhcCCccCccccee-HHH
Confidence 34455544 24567778888877654 48999999999877 45667888888776542211211110 0111 256
Q ss_pred hhHHHHHHhh
Q 030595 110 FGPKLKELMQ 119 (175)
Q Consensus 110 F~~~l~~~~~ 119 (175)
|+..|+.+++
T Consensus 187 FDe~lk~~le 196 (199)
T KOG3369|consen 187 FDEKLKFLLE 196 (199)
T ss_pred hhHHHHHHHh
Confidence 7777766654
No 27
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=47.26 E-value=52 Score=18.74 Aligned_cols=27 Identities=7% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 030595 131 LAKVKAQVSEVKGVMMENIEKVLDRGE 157 (175)
Q Consensus 131 l~~i~~~l~~v~~im~~ni~~il~Rge 157 (175)
...|+.+|+.++.-|-.+++.|-.|=.
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 567899999999999999999987754
No 28
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=46.38 E-value=60 Score=18.99 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~ 168 (175)
+.+..|...|.+++.++.+==+.|-+-|+-|+.|.+..+.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~ 43 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDR 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHH
Confidence 4566666667777666665555555666666666655543
No 29
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=45.73 E-value=99 Score=23.19 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=44.8
Q ss_pred CCCCcchHHHHHHHHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHH
Q 030595 71 ESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIE 150 (175)
Q Consensus 71 ~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~ 150 (175)
-+|.+..--..|.+.++.-.+..... +..+=...|...-.+| .+|.=.+.+-.-+.+..+.-.-+.+-++
T Consensus 109 fTfD~~~L~~~L~ec~~~L~~lv~~H---------LT~KS~~Ri~~vF~~f-~~~efL~~lf~~~~~~~~~L~~i~~~Ln 178 (186)
T PF05527_consen 109 FTFDRNYLSKLLKECRDLLHQLVEPH---------LTPKSHGRIDHVFNFF-SDPEFLDALFSPDEEYRDHLGKICDGLN 178 (186)
T ss_dssp S---HHHHHHHHHHHHHHHHHHHTTT---------S-HHHHHHHHHHHHHH-T-HHHHHHHTSG--GGHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh---------CChhhHHHHHHHHHhh-CChHHHHHHhCcccchHHHHHHHHHHHH
Confidence 34445555556666666655554311 1111124566666777 6776667776666778888888899999
Q ss_pred HHHHhhh
Q 030595 151 KVLDRGE 157 (175)
Q Consensus 151 ~il~Rge 157 (175)
++|++|.
T Consensus 179 klld~g~ 185 (186)
T PF05527_consen 179 KLLDEGS 185 (186)
T ss_dssp HHHHTT-
T ss_pred HHHhCCC
Confidence 9999985
No 30
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=45.67 E-value=33 Score=20.41 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHccCCCC-CCeeEEEeCCeEEEEEE--eCCEEEEEEecC
Q 030595 25 SGNFNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLV--DNGYTYCVVADE 71 (175)
Q Consensus 25 ~~~~~~~~~~il~ki~~~-~~k~~~~~~~~~~h~~~--~~~~~~~~it~~ 71 (175)
-.+|+.+...+-+++... .-|..|+.+|..++=+. .+|-.|+|...+
T Consensus 8 ~~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e 57 (60)
T PF03607_consen 8 FRSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGRE 57 (60)
T ss_dssp HSSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSS
T ss_pred hcCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCC
Confidence 467899999999988865 35778888886654332 378889998654
No 31
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.14 E-value=9.8 Score=35.83 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=24.9
Q ss_pred HHHhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 145 MMENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 145 m~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
-..--+.+.+|||+|+.++++|++|+.+++
T Consensus 943 ~~~a~~~l~e~~erL~~~e~~t~~~~~sa~ 972 (993)
T KOG1983|consen 943 ASGALQPLNERGERLSRLEERTAEMANSAK 972 (993)
T ss_pred hhhcchhhHhhccccchHHHHHHHhhccHH
Confidence 344557788999999999999999998763
No 32
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.37 E-value=98 Score=25.82 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=33.1
Q ss_pred CeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhhC
Q 030595 52 AHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (175)
Q Consensus 52 ~~~~h~~~~~~~~~~~it~~~~~~~~af~fL~~i~~~F~~~~~ 94 (175)
.|.++-...+++.+++++.-+.|-=.++.||.+|.+-|..-|+
T Consensus 54 ~hylfsv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 54 HHYLFSVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred ceeeeeeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 3333334467777777778888888999999999999988776
No 33
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=42.40 E-value=27 Score=27.94 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=21.3
Q ss_pred EeCCeEEEEEEeCCEEEEEEecCCCC
Q 030595 49 NCDAHTFNYLVDNGYTYCVVADESSG 74 (175)
Q Consensus 49 ~~~~~~~h~~~~~~~~~~~it~~~~~ 74 (175)
+++|++|-|-..+++.++|+|+-.+-
T Consensus 237 ~i~g~ly~y~~~~~v~i~c~chg~~~ 262 (284)
T PF07897_consen 237 RIEGFLYKYGKGEEVRIVCVCHGSFL 262 (284)
T ss_pred eeeEEEEEecCCCeEEEEEEecCCCC
Confidence 45688888866789999999998864
No 34
>PHA01811 hypothetical protein
Probab=40.59 E-value=38 Score=20.64 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=13.8
Q ss_pred eeEEEeCCeEEEEEEeC
Q 030595 45 KFTYNCDAHTFNYLVDN 61 (175)
Q Consensus 45 k~~~~~~~~~~h~~~~~ 61 (175)
-.+....||.+||+-++
T Consensus 6 ivtlrvkgyi~hyldd~ 22 (78)
T PHA01811 6 IVTLRVKGYILHYLDDD 22 (78)
T ss_pred EEEEEEeeEEEEEEcCc
Confidence 56777889999999764
No 35
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=40.09 E-value=78 Score=18.65 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=8.4
Q ss_pred hhhhHHHHHhhHhhhcCC
Q 030595 156 GEKIELLVDKTENLHQQP 173 (175)
Q Consensus 156 ge~l~~L~~ks~~L~~~s 173 (175)
|.|||+|+..-.+|..+|
T Consensus 34 ~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 34 SSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHCCHHHH-------
T ss_pred HhhHHHHHHHHHHHHHhc
Confidence 667888887777776655
No 36
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=39.67 E-value=87 Score=23.21 Aligned_cols=95 Identities=11% Similarity=0.125 Sum_probs=50.8
Q ss_pred EEEEEecCCCCcchHHHHHHHHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHH
Q 030595 64 TYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKG 143 (175)
Q Consensus 64 ~~~~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~ 143 (175)
+|.|.+-+- -....-.|++.+..++.+......-.....-. .-|...++-.++-- +.+.. -+-+.++-.
T Consensus 65 IF~~L~~~l-~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~--LAl~~a~~~~Iql~-e~~~~-------~~~vk~L~~ 133 (174)
T PF04510_consen 65 IFICLPMPL-YGEFLIPFMENLLPEISKVLLPPEEVDVEDWV--LALTGAVCMAIQLL-ESSMR-------VDLVKELLP 133 (174)
T ss_pred HHHhCCchh-hhhHHHHHHHHHHHHHHHHcCCchhccHHHHH--HHHHHHHHHHHHHh-ccccH-------HHHHHHHHH
Confidence 456666443 44556678888888887766422100000000 12223333333222 22222 233455566
Q ss_pred HHHHhHHHHHHhhhhhHHHHHhhHhh
Q 030595 144 VMMENIEKVLDRGEKIELLVDKTENL 169 (175)
Q Consensus 144 im~~ni~~il~Rge~l~~L~~ks~~L 169 (175)
+|.+.+.++++||...+-+++-=+++
T Consensus 134 ~mv~Sv~elV~~g~E~~~l~rgl~~~ 159 (174)
T PF04510_consen 134 KMVKSVKELVERGMEVGFLRRGLRDF 159 (174)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 69999999999999876666554443
No 37
>PHA03386 P10 fibrous body protein; Provisional
Probab=39.23 E-value=72 Score=21.01 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 030595 129 SKLAKVKAQVSEVKG 143 (175)
Q Consensus 129 d~l~~i~~~l~~v~~ 143 (175)
+|+..+|.+|++++.
T Consensus 19 ~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 19 TKVDALQTQLNGLEE 33 (94)
T ss_pred hHHHHHHHHHHHHHh
Confidence 677888888888774
No 38
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=39.03 E-value=1.2e+02 Score=21.22 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=44.6
Q ss_pred CeEEEEEEeCCE--------EEEEEecCCCCcc-hHHHHHHHHHHHHHhhhCCCCCCCCCCCCcccchhH-HHHHHhhhh
Q 030595 52 AHTFNYLVDNGY--------TYCVVADESSGRQ-IPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGP-KLKELMQYC 121 (175)
Q Consensus 52 ~~~~h~~~~~~~--------~~~~it~~~~~~~-~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~-~l~~~~~~y 121 (175)
++++|....+|+ .|++ ....-|++ .+-.+++.|-..+ + +. ...+..|.. .|+++.+.+
T Consensus 27 Q~Slhi~~~~g~~~~~~~h~efL~-~~~~DPr~~~~~~L~~~i~~~~----g-----~i--vvyN~sfE~~rL~ela~~~ 94 (130)
T PF11074_consen 27 QFSLHITDNDGIIYKELEHVEFLA-DPGEDPRRELIEALIKAIGSIY----G-----SI--VVYNKSFEKTRLKELAELF 94 (130)
T ss_pred EEEEEEEcCCCcccCchhhHHHhc-cCCCCchHHHHHHHHHHhhhhc----C-----eE--EEechHHHHHHHHHHHHHh
Confidence 577888777773 4455 22234443 3444444443322 1 11 112355664 466666654
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHHH
Q 030595 122 VDHPEEISKLAKVKAQVSEVKGVMME 147 (175)
Q Consensus 122 ~~~~~~~d~l~~i~~~l~~v~~im~~ 147 (175)
|.-.+++..|.+.+-|.....+.
T Consensus 95 ---p~~~~~l~~I~~r~vDL~~~f~~ 117 (130)
T PF11074_consen 95 ---PDYAEKLNSIIERTVDLLDPFKN 117 (130)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55557888888887777766654
No 39
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.88 E-value=1.3e+02 Score=21.31 Aligned_cols=54 Identities=13% Similarity=0.287 Sum_probs=39.6
Q ss_pred HHHHHccCCCCC---CeeEEEeCCeEEEEEE-eCCEEEEEEecCCCCcchHHHHHHHHHH
Q 030595 32 AYQCLQKLPASN---NKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKD 87 (175)
Q Consensus 32 ~~~il~ki~~~~---~k~~~~~~~~~~h~~~-~~~~~~~~it~~~~~~~~af~fL~~i~~ 87 (175)
.+.+..|+.|++ +-.++..+.|..||.. -.|+=++-+||+.... .-..|+.|.+
T Consensus 45 lkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptglk~vl~Tdpk~~~--ir~vLq~IYs 102 (140)
T KOG3368|consen 45 LKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGLKFVLNTDPKAGS--IRDVLQYIYS 102 (140)
T ss_pred HHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCcEEEEecCCCccc--HHHHHHHHHH
Confidence 577888998884 3457778889999865 4899999999987542 2245666666
No 40
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=38.67 E-value=1e+02 Score=19.40 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=36.5
Q ss_pred ccCCCCHHHHHHHHHccCCC--CCCeeEEEeCC-eEEEEE--EeCCEEEEEEecCCC
Q 030595 22 TEFSGNFNSIAYQCLQKLPA--SNNKFTYNCDA-HTFNYL--VDNGYTYCVVADESS 73 (175)
Q Consensus 22 ~~~~~~~~~~~~~il~ki~~--~~~k~~~~~~~-~~~h~~--~~~~~~~~~it~~~~ 73 (175)
...-.+|+.+...+-+++.+ ..-+..++.+| ....-+ .++|-.|+|...+.+
T Consensus 22 ~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~f 78 (80)
T cd01617 22 RRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPF 78 (80)
T ss_pred hhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCC
Confidence 33346899999999888885 45577888887 544432 247889999876543
No 41
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=37.45 E-value=68 Score=17.12 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=13.3
Q ss_pred HHHHHHHhHHHHHHhhhh
Q 030595 141 VKGVMMENIEKVLDRGEK 158 (175)
Q Consensus 141 v~~im~~ni~~il~Rge~ 158 (175)
-++-....||..|++|++
T Consensus 10 ~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 10 RKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHcCCH
Confidence 455667889999999876
No 42
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=35.88 E-value=1.5e+02 Score=20.47 Aligned_cols=73 Identities=10% Similarity=0.153 Sum_probs=40.5
Q ss_pred CCeeEEEeCCeEEEEEE-eCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhhCCCCCCCC-CCCCcccchhHHHHHHh
Q 030595 43 NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATA-PANGLNKEFGPKLKELM 118 (175)
Q Consensus 43 ~~k~~~~~~~~~~h~~~-~~~~~~~~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~-~~~~l~~~F~~~l~~~~ 118 (175)
.++..+..+.+..|+.. ..|.-|+.++.+. +...+|+ |..+...|..-...+...+. -|-. ...|++.++++.
T Consensus 57 sg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~-t~na~~q-l~kiY~lYsdYV~knPfys~EMPI~-c~lFde~lkrm~ 131 (134)
T COG5122 57 SGRLVLYFRNFVMTIFQTTTGTKFVFVAEKR-TVNALFQ-LQKIYSLYSDYVTKNPFYSPEMPIQ-CSLFDEHLKRMF 131 (134)
T ss_pred CceEEEEeccEEEEEEEecCCcEEEEEecCC-chhHHHH-HHHHHHHHHHHhhcCCCCCccccee-hhhhhHHHHHHh
Confidence 46777888888888654 5799999998433 3334555 44555555432211211111 1111 356777777665
No 43
>PLN03223 Polycystin cation channel protein; Provisional
Probab=35.85 E-value=96 Score=30.58 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhc
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 171 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~ 171 (175)
.|.|.+.++.|-+++.-+.++=-++++|+++|.++.+|-.+|.+
T Consensus 1580 ~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1580 VDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 57888888889999999999999999999999999998777653
No 44
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=35.82 E-value=1.6e+02 Score=20.78 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhH
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTE 167 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~ 167 (175)
..+...+..|.++|.-+..-=..+-.|-+.|..|-..+.
T Consensus 79 ~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~ 117 (142)
T PF04048_consen 79 SSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQ 117 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334444444444444444444444444455555544443
No 45
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=33.99 E-value=47 Score=23.29 Aligned_cols=23 Identities=4% Similarity=0.199 Sum_probs=18.8
Q ss_pred cCCCCCCeeEEEeCCeEEEEEEe
Q 030595 38 KLPASNNKFTYNCDAHTFNYLVD 60 (175)
Q Consensus 38 ki~~~~~k~~~~~~~~~~h~~~~ 60 (175)
+|.|++++..+..+|..|+|+..
T Consensus 13 kIyPG~G~~fVR~DGkvf~Fcss 35 (131)
T PRK14891 13 EIEPGTGTMFVRKDGTVLHFVDS 35 (131)
T ss_pred cccCCCCcEEEecCCCEEEEecH
Confidence 67888888888888988888754
No 46
>PRK00807 50S ribosomal protein L24e; Validated
Probab=32.05 E-value=65 Score=18.70 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=16.1
Q ss_pred cCCCCCCeeEEEeCCeEEEEEE
Q 030595 38 KLPASNNKFTYNCDAHTFNYLV 59 (175)
Q Consensus 38 ki~~~~~k~~~~~~~~~~h~~~ 59 (175)
+|.|.+++..+..||..|+|+.
T Consensus 10 ~I~pg~G~~~vr~Dgkv~~Fcs 31 (52)
T PRK00807 10 EIEPGTGKMYVKKDGTILYFCS 31 (52)
T ss_pred eEcCCCCeEEEEeCCcEEEEeC
Confidence 4667777777788888887764
No 47
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=29.96 E-value=3.4e+02 Score=22.92 Aligned_cols=67 Identities=7% Similarity=0.091 Sum_probs=50.0
Q ss_pred HHHHHHHHHccCCCC-CCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhhC
Q 030595 28 FNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (175)
Q Consensus 28 ~~~~~~~il~ki~~~-~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~af~fL~~i~~~F~~~~~ 94 (175)
+-.+...++.-+... +.-..+..++..|.|+..+.+.++||+...-+......-|+-+.....+..+
T Consensus 37 ~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~ly~qils~lt 104 (415)
T PF03164_consen 37 LMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYLYSQILSILT 104 (415)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHHHHHHHHhcc
Confidence 445556666655433 4445778889999999999999999999988877777778877777665544
No 48
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=29.71 E-value=1.3e+02 Score=19.01 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCC
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQP 173 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s 173 (175)
+.+..++..+.+--+-+.++=+++=+=.++-+.|.+.|+....+|
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a 54 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNA 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHH
Confidence 455555666665555555555555555555666666666655443
No 49
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=29.51 E-value=1.8e+02 Score=19.45 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=38.2
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 030595 84 RVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (175)
Q Consensus 84 ~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~R 155 (175)
+.+++|..-+.+.. .+ ..+....|.+....| + -.+.+.....++..-+.-+.+|+..++.+
T Consensus 2 ea~~ef~~I~~n~~------lt-~~e~~~~l~~Wa~~~-~---v~~~~~~f~~~~~~~~~~~~~~~~~vi~~ 62 (113)
T PF02520_consen 2 EARKEFFQIFQNPN------LT-KAEIEEQLDEWAEKY-G---VQDQYNEFKAQVQAQKEEVRKNVTAVISN 62 (113)
T ss_pred hHHHHHHHHHcCCC------CC-HHHHHHHHHHHHHHC-C---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667776664321 11 134455666666665 2 23777777888877777888887777765
No 50
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=29.02 E-value=76 Score=18.66 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=17.5
Q ss_pred cCCCCCCeeEEEeCCeEEEEEE
Q 030595 38 KLPASNNKFTYNCDAHTFNYLV 59 (175)
Q Consensus 38 ki~~~~~k~~~~~~~~~~h~~~ 59 (175)
+|.|+.++..+..||..|+|+.
T Consensus 12 ~I~PG~G~~~Vr~Dgkv~~F~s 33 (54)
T cd00472 12 KIYPGHGKMYVRNDGKVFRFCS 33 (54)
T ss_pred eecCCCccEEEecCCCEEEEEC
Confidence 5778877888888888888875
No 51
>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family. These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....
Probab=28.66 E-value=2.3e+02 Score=25.10 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=29.7
Q ss_pred CCeEEEEEEeCCEEEEEEec-CCCCcchHHHHHHHHHHHHH
Q 030595 51 DAHTFNYLVDNGYTYCVVAD-ESSGRQIPMAFLERVKDEFV 90 (175)
Q Consensus 51 ~~~~~h~~~~~~~~~~~it~-~~~~~~~af~fL~~i~~~F~ 90 (175)
|||-++|.+.++-+.+||+. .+.+.+-+-.|.+.|.+.+.
T Consensus 547 dGyGi~Y~i~~~~i~f~iss~~~~~~t~~~~f~~~l~~al~ 587 (591)
T PF00755_consen 547 DGYGICYNIQPDSISFSISSFKSCPETSSERFAKALEQALR 587 (591)
T ss_dssp TSEEEEEEEESSEEEEEEEEETTSTTS-HHHHHHHHHHHHH
T ss_pred cceEEEEEecCCeEEEEEEecCCCCcccHHHHHHHHHHHHH
Confidence 68999998876666666655 66888888888888877664
No 52
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.40 E-value=83 Score=21.77 Aligned_cols=26 Identities=19% Similarity=0.472 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVL 153 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il 153 (175)
...+..++.+|.|+|+.++.-|+.++
T Consensus 95 ~E~veEL~~Dv~DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYREQIDQLV 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 37889999999999999999888763
No 53
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.96 E-value=1.6e+02 Score=23.52 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhc
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 171 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~ 171 (175)
..+.+++.+|-||.+|+++==--+=+-|+.+|++.+.-+..+.
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~ 222 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASV 222 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Confidence 7889999999999999998888888899999999888777654
No 54
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=27.54 E-value=51 Score=17.54 Aligned_cols=19 Identities=11% Similarity=0.361 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 030595 128 ISKLAKVKAQVSEVKGVMM 146 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~ 146 (175)
.|+|..|.+++.++-.+|.
T Consensus 16 R~NI~~il~~m~~mpgim~ 34 (35)
T PF12579_consen 16 RDNILAILNDMNDMPGIMS 34 (35)
T ss_pred HHHHHHHHHHHHcchhhhc
Confidence 3667777777777666664
No 55
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=27.47 E-value=96 Score=22.19 Aligned_cols=31 Identities=13% Similarity=0.482 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l 159 (175)
..+...+.+++.-+.-..+-+..+|++|..|
T Consensus 51 ~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 51 KEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 5566666666666555555666666666654
No 56
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=27.19 E-value=1.8e+02 Score=20.23 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=3.3
Q ss_pred HhHHHHHH
Q 030595 147 ENIEKVLD 154 (175)
Q Consensus 147 ~ni~~il~ 154 (175)
++|.+.|+
T Consensus 48 kDisdkId 55 (121)
T PF03310_consen 48 KDISDKID 55 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 57
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=26.48 E-value=1.8e+02 Score=21.63 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=27.1
Q ss_pred HHHHHHhhhhc---CChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 030595 112 PKLKELMQYCV---DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (175)
Q Consensus 112 ~~l~~~~~~y~---~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~R 155 (175)
|.+.++++.|. +.|...+.+.+...+++++-+.+.+++++.+++
T Consensus 136 p~~~~l~~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~ 182 (199)
T PF10112_consen 136 PTAVKLLEKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFEKDLDK 182 (199)
T ss_pred hHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665552 233334666777777777777777777766654
No 58
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=26.48 E-value=1.6e+02 Score=18.04 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.2
Q ss_pred HHHhhHhh
Q 030595 162 LVDKTENL 169 (175)
Q Consensus 162 L~~ks~~L 169 (175)
+.++++++
T Consensus 64 ~~e~~~e~ 71 (74)
T PF12732_consen 64 AKEKAKEL 71 (74)
T ss_pred HHHHHHHh
Confidence 34444433
No 59
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=26.43 E-value=1.2e+02 Score=16.64 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=14.5
Q ss_pred HHHHHhHHHHHHhhhhhHHHHHhhH
Q 030595 143 GVMMENIEKVLDRGEKIELLVDKTE 167 (175)
Q Consensus 143 ~im~~ni~~il~Rge~l~~L~~ks~ 167 (175)
+.+.+|-..+|...+-|+.+.++-+
T Consensus 10 eLV~eNK~ell~d~~~me~Ieerie 34 (40)
T PF13040_consen 10 ELVRENKQELLNDKEAMEKIEERIE 34 (40)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 3455666666666666666655543
No 60
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=26.40 E-value=1.5e+02 Score=17.56 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhh
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~ 170 (175)
.+.|.....-++++.++-.+.++.+-.-++.|.....|-.++.
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~ 49 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDID 49 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888888888888888888877776654
No 61
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=26.26 E-value=72 Score=21.09 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhH
Q 030595 135 KAQVSEVKGVMMENIEKVLDRGEKIE 160 (175)
Q Consensus 135 ~~~l~~v~~im~~ni~~il~Rge~l~ 160 (175)
+.+.+++-+.+.+.|...|.+|++++
T Consensus 19 k~~a~~~v~~~~~~i~~aL~~G~~V~ 44 (94)
T COG0776 19 KKDAEEAVDAFLEEITEALAKGERVE 44 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 56888899999999999999999875
No 62
>PF13077 DUF3909: Protein of unknown function (DUF3909)
Probab=26.19 E-value=1.1e+02 Score=19.83 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=20.0
Q ss_pred eCCeEEEEEE-eCCEEEEEEecCC--CCcchHHHHHHH
Q 030595 50 CDAHTFNYLV-DNGYTYCVVADES--SGRQIPMAFLER 84 (175)
Q Consensus 50 ~~~~~~h~~~-~~~~~~~~it~~~--~~~~~af~fL~~ 84 (175)
.+|...+... -+|++|+.++-.+ ..-...|+||++
T Consensus 71 rdgi~lym~aeidg~~~vsvsy~edalhlqelfqflee 108 (108)
T PF13077_consen 71 RDGIDLYMHAEIDGVCYVSVSYSEDALHLQELFQFLEE 108 (108)
T ss_pred ccceeEEEEeeeccEEEEEEeechhhHHHHHHHHHhhC
Confidence 3454433222 3789998887433 344557777763
No 63
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=25.92 E-value=1.4e+02 Score=17.10 Aligned_cols=41 Identities=15% Similarity=0.438 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L 169 (175)
+.+..+...+.+++++..+=-..+-+-|+.|+.+....+..
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~ 52 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDA 52 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 67788888888888887765555666777888777766544
No 64
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.90 E-value=69 Score=24.01 Aligned_cols=37 Identities=16% Similarity=0.412 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhH
Q 030595 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTE 167 (175)
Q Consensus 130 ~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~ 167 (175)
.+..+|--|+++- -|.+.++.+|.-||+|+-++-+++
T Consensus 159 ~l~riq~~l~~~V-p~le~lN~~L~~~eRLePf~~~~d 195 (217)
T KOG4515|consen 159 DLCRIQIILEDIV-PMLETLNEILTPDERLEPFNLGSD 195 (217)
T ss_pred HHHHHHHHHHHhH-HHHHHHHhcCCcccccCCcccCcc
Confidence 3344444444432 366788999999999998888876
No 65
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=25.70 E-value=2e+02 Score=18.95 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=39.3
Q ss_pred cchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHh
Q 030595 108 KEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (175)
Q Consensus 108 ~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~ 168 (175)
+.|. .+++.+..| |.. =....|..++..+.+-..-|+.+.+.||+-+..-.-.++=
T Consensus 23 G~~~-~~R~~l~~Y---P~d-l~~~~ia~~~~~~~qa~~~n~~ra~~R~D~~~~~~~~~~f 78 (100)
T PF13228_consen 23 GEFT-ALRERLAYY---PED-LRLNKIARNLMLLAQAGQYNLGRALKRGDILAANHAISEF 78 (100)
T ss_pred chHH-HHHHHHHHC---hHH-HHHHHHHHHHHHhhhhhHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4554 444444655 554 5667777788888777788999999999998776655543
No 66
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=24.97 E-value=2.7e+02 Score=21.21 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCCCC-CcccchhHHHHHHhhhhcCCh---------hhhHHHHHHHHHHHHHHHHHHH
Q 030595 78 PMAFLERVKDEFVSKYGGGKAATAPAN-GLNKEFGPKLKELMQYCVDHP---------EEISKLAKVKAQVSEVKGVMME 147 (175)
Q Consensus 78 af~fL~~i~~~F~~~~~~~~~~~~~~~-~l~~~F~~~l~~~~~~y~~~~---------~~~d~l~~i~~~l~~v~~im~~ 147 (175)
+..||++|-+......... ..+ .-+..|...|.++-.++..++ ....+..+.-++|++-+.+|.+
T Consensus 14 t~~~ik~liK~c~~li~A~-----k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~ 88 (207)
T cd07634 14 TNKFIKELIKDGSLLIGAL-----RNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQ 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888776654433211 011 113677777777776554443 2346777888888888888888
Q ss_pred hHHHHHH
Q 030595 148 NIEKVLD 154 (175)
Q Consensus 148 ni~~il~ 154 (175)
|++..+-
T Consensus 89 ~~~~~l~ 95 (207)
T cd07634 89 NANDVLI 95 (207)
T ss_pred HHHHHHH
Confidence 8876653
No 67
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=24.76 E-value=1.4e+02 Score=16.75 Aligned_cols=40 Identities=23% Similarity=0.472 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~ 168 (175)
+.+..+...+.+++.+..+==..+-+-|+.|+.+....+.
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~ 45 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDN 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667776666553333344444566666555443
No 68
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=24.21 E-value=73 Score=20.47 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHHHHhh
Q 030595 139 SEVKGVMMENIEKVLDRG 156 (175)
Q Consensus 139 ~~v~~im~~ni~~il~Rg 156 (175)
.||.++|+++|..+|..-
T Consensus 24 ~ev~e~m~~~v~~llG~l 41 (86)
T PF05542_consen 24 PEVLEAMKQHVSGLLGNL 41 (86)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 589999999999998764
No 69
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=24.11 E-value=85 Score=25.20 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEK 151 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~ 151 (175)
+...+++.++-|.-+-|-.+=..
T Consensus 103 e~~~klEKel~e~~~~~fg~e~~ 125 (295)
T TIGR01478 103 EPMSTIEKELLEKYEEMFGDESH 125 (295)
T ss_pred chhhHHHHHHHHHHHHHhCCccc
Confidence 44455666666655555544444
No 70
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=23.82 E-value=1.3e+02 Score=18.54 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHHHhhhhhHHHHHhhH
Q 030595 140 EVKGVMMENIEKVLDRGEKIELLVDKTE 167 (175)
Q Consensus 140 ~v~~im~~ni~~il~Rge~l~~L~~ks~ 167 (175)
..+..+..-+..-+.|-|.|-....+++
T Consensus 47 ~~k~~~~~k~~eyl~RaE~LK~~l~~~~ 74 (75)
T cd02678 47 KSKESIRAKCTEYLDRAEKLKEYLAKKE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3467778888888889888888776653
No 71
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=23.42 E-value=1.6e+02 Score=20.85 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHH
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIEL 161 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~ 161 (175)
|.++++|..|++.-.+|...|. .|+|......
T Consensus 3 DrlTQLQd~ldqL~~~f~~si~-~l~~~a~~~~ 34 (144)
T PF11221_consen 3 DRLTQLQDCLDQLAEQFCNSIG-YLQRDAPPSP 34 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHTTGGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-hhccCCCCCC
Confidence 8999999999999999999887 4454444333
No 72
>KOG2866 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.42 E-value=2.7e+02 Score=23.10 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhh
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~ 170 (175)
.++.+.|-++++-..+.|..-++.+++.+..|+......+...
T Consensus 88 ~~~~neI~~~v~~l~qe~~~~~e~i~da~~~l~~a~~~is~~~ 130 (349)
T KOG2866|consen 88 VDKENEILNEVENLHQEVRLPREDIADAENLLDLAASDISKAK 130 (349)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHH
Confidence 4788889999999999999999999999999998876655443
No 73
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=22.25 E-value=1.6e+02 Score=16.59 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKV 152 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~i 152 (175)
..+..+.+-+.++|+.|.+.+..+
T Consensus 8 ~ql~~l~~~l~elk~~l~~Q~kE~ 31 (45)
T PF11598_consen 8 KQLSELNQMLQELKELLRQQIKET 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777888887776654
No 74
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.08 E-value=4.3e+02 Score=21.37 Aligned_cols=38 Identities=13% Similarity=0.342 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 166 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks 166 (175)
+.+.+++..|.|++++-.+==-.+-..||-+|.++.--
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV 243 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNV 243 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77888888899888887777777778888888776543
No 75
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.04 E-value=2.2e+02 Score=18.04 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=5.6
Q ss_pred hhhhhHHHHHhhHh
Q 030595 155 RGEKIELLVDKTEN 168 (175)
Q Consensus 155 Rge~l~~L~~ks~~ 168 (175)
.-++++.+.+...+
T Consensus 66 k~~~v~~~~~~v~~ 79 (90)
T PF06103_consen 66 KLEKVDPVFEAVAD 79 (90)
T ss_pred HHHhHHHHHHHHHH
Confidence 33344444443333
No 76
>PHA03011 hypothetical protein; Provisional
Probab=21.75 E-value=2.6e+02 Score=18.76 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=42.7
Q ss_pred hHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhh
Q 030595 111 GPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170 (175)
Q Consensus 111 ~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~ 170 (175)
...+.++..+|| .-.|...-+..++.+...+..+|.|.+.-=...+|.|.+.-.+|+
T Consensus 63 ~e~ldeL~~qYN---~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~s 119 (120)
T PHA03011 63 IEILDELIAQYN---ELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANLS 119 (120)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhccC
Confidence 345666676773 234788888899999999999999998887778888877665553
No 77
>PTZ00370 STEVOR; Provisional
Probab=21.57 E-value=1.1e+02 Score=24.72 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEK 151 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~ 151 (175)
+...+++.++-|.-+-|..+=..
T Consensus 102 e~k~klEKel~e~~ee~fg~~~~ 124 (296)
T PTZ00370 102 EPMSTLEKELLETYEEMFGDESD 124 (296)
T ss_pred chhHHHHHHHHHHHHHHhcCccc
Confidence 45666666666666666555444
No 78
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=21.51 E-value=99 Score=19.93 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhH
Q 030595 135 KAQVSEVKGVMMENIEKVLDRGEKIE 160 (175)
Q Consensus 135 ~~~l~~v~~im~~ni~~il~Rge~l~ 160 (175)
+.+++.+-+.+.+.|.+.|.+|+++.
T Consensus 18 ~~~~~~~v~~~~~~i~~~L~~g~~V~ 43 (90)
T PRK10753 18 KTQAKAALESTLAAITESLKEGDAVQ 43 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 55677778888888888889998764
No 79
>PHA02557 22 prohead core protein; Provisional
Probab=21.13 E-value=3e+02 Score=21.90 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHh-hhhcCChh-hhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 030595 78 PMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELM-QYCVDHPE-EISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (175)
Q Consensus 78 af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~-~~y~~~~~-~~d~l~~i~~~l~~v~~im~~ni~~il~R 155 (175)
+=.||+.+-.+|...-... ........+..+|-.-|+.+. .++-.-|. ..|.+..+..+|++-..-...-++...++
T Consensus 89 vd~~l~~~~~eW~~ENk~A-v~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l 167 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLA-VDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVAL 167 (271)
T ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458888888887643200 111111112234444456655 44434554 45899999999999999988888888888
Q ss_pred hhhhHHH------HHhhHhhhcC
Q 030595 156 GEKIELL------VDKTENLHQQ 172 (175)
Q Consensus 156 ge~l~~L------~~ks~~L~~~ 172 (175)
.+.++.+ ...|.+|...
T Consensus 168 ~e~i~~~~r~~i~~e~t~gLtds 190 (271)
T PHA02557 168 EEYINEVKREVILSEVTKDLTES 190 (271)
T ss_pred HHHHHHHHHHHHHHHHHcchhHH
Confidence 8777654 4455555543
No 80
>PHA02979 hypothetical protein; Provisional
Probab=20.58 E-value=1.8e+02 Score=20.02 Aligned_cols=30 Identities=10% Similarity=0.293 Sum_probs=20.5
Q ss_pred eeEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 030595 45 KFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (175)
Q Consensus 45 k~~~~~~~~~~h~~~~~~~~~~~it~~~~~ 74 (175)
+.....++|.|-.-...++..+|+|..+++
T Consensus 61 ~LimD~ndYs~e~gN~SnfiiiCI~Sdd~G 90 (140)
T PHA02979 61 KLIMDANDYSFETGNSSNFIIICICSDDCG 90 (140)
T ss_pred eeEEecccceEEeCCcccEEEEEEeccccc
Confidence 334445567765544567899999998876
No 81
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=20.49 E-value=2.5e+02 Score=22.79 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 030595 78 PMAFLERVKDEFVSKY 93 (175)
Q Consensus 78 af~fL~~i~~~F~~~~ 93 (175)
+=.||+.+.++|....
T Consensus 246 ~~~~Ldklh~eit~~L 261 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKAL 261 (384)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4458888888887654
No 82
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=20.03 E-value=4e+02 Score=20.29 Aligned_cols=47 Identities=23% Similarity=0.440 Sum_probs=31.8
Q ss_pred cchhHHHHHHhhhhcCCh---------hhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 030595 108 KEFGPKLKELMQYCVDHP---------EEISKLAKVKAQVSEVKGVMMENIEKVLD 154 (175)
Q Consensus 108 ~~F~~~l~~~~~~y~~~~---------~~~d~l~~i~~~l~~v~~im~~ni~~il~ 154 (175)
..|...|.++-.++..++ ....+...+-++|++-+.+|.++.+..|-
T Consensus 40 ~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l~ 95 (207)
T cd07636 40 RKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVLI 95 (207)
T ss_pred HHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777665554444 22356677788888888888888876655
Done!