Query 030595
Match_columns 175
No_of_seqs 127 out of 866
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 02:23:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 5.3E-55 1.8E-59 325.9 3.9 170 3-174 1-170 (189)
2 2nut_C Vesicle-trafficking pro 100.0 3.4E-48 1.2E-52 291.1 12.3 168 4-174 1-179 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 4.5E-40 1.6E-44 246.4 4.0 167 3-174 1-183 (199)
4 4afi_A AP-3 complex subunit de 100.0 6.7E-37 2.3E-41 224.1 14.4 120 3-123 53-172 (173)
5 2vx8_A Nucleoporin-like protei 100.0 2.2E-32 7.6E-37 199.6 12.4 121 3-124 43-163 (169)
6 3bw6_A Synaptobrevin homolog Y 99.9 3.3E-27 1.1E-31 168.6 13.0 123 4-130 5-144 (144)
7 1gl2_A Endobrevin; membrane pr 99.7 5.7E-18 2E-22 104.4 3.2 51 124-174 4-54 (65)
8 1l4a_A Synaptobrevin; snare, s 99.7 5.1E-17 1.7E-21 104.2 5.6 51 124-174 10-60 (80)
9 1n7s_A Vesicle-associated memb 99.7 3.9E-17 1.3E-21 100.2 4.7 47 128-174 3-49 (63)
10 3b5n_A Synaptobrevin homolog 1 99.7 7.7E-17 2.6E-21 98.2 4.7 46 129-174 2-47 (61)
11 2nps_A VAMP-4, vesicle-associa 99.7 1.7E-17 5.9E-22 104.9 1.5 52 123-174 2-53 (74)
12 1sfc_A VAMP 2, protein (synapt 99.6 5.2E-16 1.8E-20 102.6 4.7 47 128-174 29-75 (96)
13 3hd7_A Vesicle-associated memb 99.6 5.1E-16 1.7E-20 101.8 4.5 47 128-174 4-50 (91)
14 2kog_A Vesicle-associated memb 99.5 1.3E-15 4.4E-20 104.5 -1.3 48 127-174 31-78 (119)
15 1urq_A M-tomosyn isoform; tran 99.5 1.7E-14 5.9E-19 87.7 3.6 45 129-173 4-48 (63)
16 3zym_A Phosphatidylinositol-bi 98.5 4.8E-08 1.7E-12 77.4 3.0 32 128-159 279-310 (310)
17 3fie_C Fragment of vesicle-ass 98.5 2.6E-11 8.8E-16 66.2 -11.3 30 128-157 8-37 (38)
18 2fh5_A Signal recognition part 98.0 7.8E-06 2.7E-10 59.7 4.8 86 7-94 13-104 (185)
19 2fz0_A R-snare NYV1P, V-snare 95.7 0.017 5.8E-07 39.5 5.0 60 28-87 46-114 (149)
20 1w63_Q Adapter-related protein 93.3 1.4 4.8E-05 30.8 11.5 90 5-94 1-96 (158)
21 2vgl_S AP-2 complex subunit si 93.3 1.2 4E-05 30.6 9.8 48 47-94 49-96 (142)
22 3tjz_C Coatomer subunit zeta-1 91.9 2.3 7.7E-05 29.7 12.4 89 4-93 11-105 (153)
23 1w63_M Adaptor-related protein 91.2 1.7 6E-05 35.3 9.9 91 4-94 1-96 (423)
24 2vgl_M AP-2 complex subunit MU 90.3 6.1 0.00021 32.2 12.4 49 46-94 46-94 (435)
25 2j3w_A Sedlin, trafficking pro 90.2 3.2 0.00011 28.4 11.8 113 6-121 7-139 (142)
26 2j3t_C Trafficking protein par 87.2 5.6 0.00019 27.4 12.1 87 32-121 45-137 (145)
27 2j3t_D Trafficking protein par 85.6 9.1 0.00031 28.3 10.2 87 32-121 118-209 (219)
28 3cue_A Transport protein parti 84.0 8.2 0.00028 28.6 8.7 76 45-121 119-218 (219)
29 3cue_C Transport protein parti 81.0 11 0.00039 26.3 8.2 87 32-121 51-156 (159)
30 1ccd_A Clara cell 17 KD protei 79.3 4.1 0.00014 25.0 4.8 44 112-155 21-64 (77)
31 1utg_A Uteroglobin; steroid bi 76.5 3.5 0.00012 24.7 3.8 44 112-155 19-62 (70)
32 1txp_A HnRNP C, heterogeneous 75.7 2.7 9.2E-05 20.3 2.4 24 133-160 3-26 (28)
33 4a4y_A Protein MXIG; protein b 71.8 7.7 0.00026 25.1 4.7 43 5-59 85-127 (146)
34 1t3j_A Mitofusin 1; coiled coi 63.9 21 0.00071 22.8 5.5 43 129-171 36-78 (96)
35 1utr_A Uteroglobin; clara cell 58.8 7.9 0.00027 24.7 2.9 43 113-155 41-83 (96)
36 1zkr_A Major allergen I polype 58.7 20 0.00067 24.9 5.0 44 112-155 20-64 (153)
37 2nps_B Syntaxin 13, vesicle-as 58.7 26 0.00088 20.7 5.9 40 129-168 6-45 (71)
38 1l4a_C S-SNAP25 fusion protein 57.3 21 0.00073 22.1 4.6 57 113-171 13-69 (83)
39 2ygg_A Sodium/hydrogen exchang 56.9 13 0.00046 22.2 3.4 22 135-156 6-27 (70)
40 3b5n_B Protein SSO1; snare com 55.7 29 0.00099 20.4 5.9 40 129-168 10-49 (69)
41 1nhl_A Synaptosomal-associated 53.7 27 0.00094 19.5 5.3 37 134-170 5-41 (54)
42 1jth_B Syntaxin 1A; coiled-coi 53.5 34 0.0012 20.5 5.9 40 129-168 10-49 (77)
43 3lcn_C MRNA transport factor G 52.7 19 0.00064 17.3 3.2 21 128-148 5-25 (29)
44 1n7s_B Syntaxin 1A; neuronal s 52.5 33 0.0011 20.0 5.9 40 129-168 12-51 (68)
45 1gl2_B Syntaxin 7; membrane pr 50.5 35 0.0012 19.8 5.9 40 129-168 9-48 (65)
46 2pjw_V Vacuolar protein sortin 47.9 50 0.0017 20.8 6.7 40 128-167 32-71 (91)
47 1n7s_C SNAP-25A; neuronal snar 44.4 52 0.0018 20.0 6.1 44 127-170 21-64 (79)
48 3hd7_B Syntaxin-1A; membrane p 41.7 68 0.0023 20.6 7.0 40 129-168 21-60 (109)
49 1sfc_B Protein (syntaxin 1A), 39.5 63 0.0022 19.6 5.9 40 129-168 21-60 (83)
50 1ykh_B RNA polymerase II holoe 27.1 80 0.0027 21.1 4.0 24 129-152 3-26 (132)
51 2ca5_A MXIH; transport protein 24.7 1.3E+02 0.0044 18.6 4.4 33 123-155 39-81 (85)
52 1y4m_A HERV-FRD_6P24.1 proviru 24.5 1E+02 0.0035 17.3 3.4 20 129-148 7-26 (53)
53 3k4t_A Virion-associated prote 24.4 1.3E+02 0.0045 18.8 4.2 27 130-156 3-32 (95)
54 2xus_A Breast cancer metastasi 23.7 44 0.0015 18.5 1.7 15 129-143 32-46 (49)
55 1t1u_A Choline O-acetyltransfe 22.0 2.2E+02 0.0075 24.4 6.6 42 50-91 566-608 (639)
56 1nm8_A Carnitine O-acetyltrans 21.6 2.3E+02 0.0078 24.1 6.6 42 50-91 550-592 (616)
57 2yko_A LINE-1 ORF1P; RNA-bindi 21.4 2.2E+02 0.0074 21.1 5.6 39 129-167 13-51 (233)
58 1mg4_A Doublecortin, doublecor 20.8 1.4E+02 0.0048 19.4 4.1 56 22-78 37-100 (113)
59 3pr6_A Trapp-associated protei 20.2 2.3E+02 0.0077 19.7 8.1 90 4-93 9-125 (162)
60 2kfe_A Meucin-24; alpha-helix, 20.2 85 0.0029 14.8 2.1 18 129-146 5-22 (26)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=5.3e-55 Score=325.93 Aligned_cols=170 Identities=36% Similarity=0.610 Sum_probs=150.4
Q ss_pred CccEEEEEEEcCCeeeeeeccCCCCHHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 030595 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (175)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~ki~~~~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~af~fL 82 (175)
.|+|+|||||||++|||||+..+|||..+++.+|+++|+.++|++++.|+|.|||+.++|++|+|||+.+||+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 48999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHH
Q 030595 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162 (175)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L 162 (175)
++|+++|.+.|+ ..+.++.|++++.+|.+.|++.|++| ++|.+.|++.+++.+|+||++||.+||+++|+|||+||.|
T Consensus 81 ~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~y-~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L 158 (189)
T 4b93_A 81 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHH-SENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELL 158 (189)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHH-HCC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCC
T ss_pred HHHHHHHHhhcc-ccccccCCccccchhhHHHHHHHHhh-hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999996 44667778888889999999999999 6777779999999999999999999999999999999999
Q ss_pred HHhhHhhhcCCC
Q 030595 163 VDKTENLHQQPF 174 (175)
Q Consensus 163 ~~ks~~L~~~s~ 174 (175)
++||++|+.+|+
T Consensus 159 ~~ks~~L~~~s~ 170 (189)
T 4b93_A 159 IDKTENLVDSSV 170 (189)
T ss_dssp EETTCC------
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=3.4e-48 Score=291.07 Aligned_cols=168 Identities=26% Similarity=0.436 Sum_probs=117.2
Q ss_pred ccEEEEEEEcC--CeeeeeeccCC---CC----HHHHHHHHHccCCC-CCCeeEEEeCCeEEEEEEeCCEEEEEEecCCC
Q 030595 4 KSLIYAFVARG--NVVLAEYTEFS---GN----FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESS 73 (175)
Q Consensus 4 ~~I~Ya~Iar~--~~iLae~~~~~---~~----~~~~~~~il~ki~~-~~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~ 73 (175)
.||+|+||||+ ++|||+|++.+ |+ |..+++.+++++++ .++|++++.++|.|||+.++|++|+|||+.+|
T Consensus 1 ~Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 1 SMVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp -CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred CceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 47999999999 79999998743 44 88999999999997 57899999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHhhhCCCCCCC-CCCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 030595 74 GRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKV 152 (175)
Q Consensus 74 ~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~i 152 (175)
|+++||.||++|+++|...|+. .|.+ +.|+++ .+|++.|+++|++| +||.+.|++.+++.+|+||++||.+||+++
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~-~~f~~~l~~~~~~y-~~~~~~d~l~~~~~~l~ev~~im~~ni~~v 157 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSF-IEFDTFIQKTKKLY-IDSRARRNLGSINTELQDVQRIMVANIEEV 157 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTT-GGGHHHHHHHHTTT-SCCC-----------------CCEEEHHHH
T ss_pred chHHHHHHHHHHHHHHHHhccc-hhccccCCCch-HHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999974 4544 578998 59999999999999 788878999999999999999999999999
Q ss_pred HHhhhhhHHHHHhhHhhhcCCC
Q 030595 153 LDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 153 l~Rge~l~~L~~ks~~L~~~s~ 174 (175)
|+|||+||.|++||++|+.+|+
T Consensus 158 l~Rge~l~~L~~ks~~L~~~s~ 179 (196)
T 2nut_C 158 LQRGEALSALDSKANNLSSLSK 179 (196)
T ss_dssp C---------------------
T ss_pred HHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=4.5e-40 Score=246.38 Aligned_cols=167 Identities=22% Similarity=0.296 Sum_probs=142.1
Q ss_pred CccEEEEEEEcCC----eeeeeeccCC----------CCHHH-HHHHHHccCCCCCCeeEEEeCCeEEE-EEEeCCEEEE
Q 030595 3 QKSLIYAFVARGN----VVLAEYTEFS----------GNFNS-IAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYC 66 (175)
Q Consensus 3 ~~~I~Ya~Iar~~----~iLae~~~~~----------~~~~~-~~~~il~ki~~~~~k~~~~~~~~~~h-~~~~~~~~~~ 66 (175)
+|.|++.+|.|.. .+|+...+.+ ++|.. .++.+++|++++ +|++++.++|.|| |+.++|++|+
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~-~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKG-SRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTT-EEEEEECSSEEEEEEECTTSEEEE
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCC-CeEEEEeCCEEEEEEEecCCEEEE
Confidence 4778888998842 5777765533 23443 568999999985 7999999999999 8999999999
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHH
Q 030595 67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMM 146 (175)
Q Consensus 67 ~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~ 146 (175)
|||+.+||+++||.||++|+++|.+.|+...|....+.+ ..| +.|+++|++| +||.+.|++.++|.+|+||++||.
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~--~~f-~~l~~~m~~Y-~dp~~~d~l~~~q~el~evk~iM~ 155 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPAT--IHY-TALDGHLSRY-QNPREADPMSKVQAELDETKIILH 155 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTT--CCC-CTHHHHHHHT-TSGGGCCCCHHHHHHHHTCCCEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccc--ccc-HHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865664433222 245 6788999999 889888999999999999999999
Q ss_pred HhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 147 ENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 147 ~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
+||+++|+|||+||+|++||++|+.+|+
T Consensus 156 ~NI~~vl~RgekLd~L~~ks~~L~~~s~ 183 (199)
T 3kyq_A 156 NTMESLLERGEKLDDLVSKSEVLGTQSK 183 (199)
T ss_dssp SSGGGTSCTTCCHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.7e-37 Score=224.14 Aligned_cols=120 Identities=32% Similarity=0.554 Sum_probs=114.3
Q ss_pred CccEEEEEEEcCCeeeeeeccCCCCHHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 030595 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (175)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~ki~~~~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~af~fL 82 (175)
-|+|+|||||||++|||||+..+|||..+++.+|+|+++.++|++++.++|.|||++++|++|+||||.+||+++||.||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 36799999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHhhhhcC
Q 030595 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVD 123 (175)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~ 123 (175)
++|+++|.+.|+ .+|.++.||+++.+|++.|+++|++||+
T Consensus 133 edI~~eF~~~yg-~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-hhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 999999999997 5788899999988999999999999953
No 5
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.98 E-value=2.2e-32 Score=199.60 Aligned_cols=121 Identities=31% Similarity=0.550 Sum_probs=107.9
Q ss_pred CccEEEEEEEcCCeeeeeeccCCCCHHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 030595 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (175)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~ki~~~~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~af~fL 82 (175)
.|+|+|+||+||++|||||++..+||..+++.+++|+++.++|.+++.++|.|||+.+||++|+||||++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 37899999999999999999999999999999999999977899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccchhHHHHHHhhhhcCC
Q 030595 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDH 124 (175)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~ 124 (175)
++|+++|.+.|+. .|.++.+++++.+|++.|++.|++|+++
T Consensus 123 edI~~eF~~~y~~-~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHTT-GGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhh-hhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 9999999999974 6777789999779999999999999543
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.95 E-value=3.3e-27 Score=168.57 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=99.8
Q ss_pred ccEEEEEEEcC----CeeeeeeccCC----------CCH-HHHHHHHHccCCCCCCeeEEEeCCeEEEEE-EeCCEEEEE
Q 030595 4 KSLIYAFVARG----NVVLAEYTEFS----------GNF-NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTYCV 67 (175)
Q Consensus 4 ~~I~Ya~Iar~----~~iLae~~~~~----------~~~-~~~~~~il~ki~~~~~k~~~~~~~~~~h~~-~~~~~~~~~ 67 (175)
|.|+|++|+|+ .++|+++++.+ ++| ..+++++++|++++ +|++++.++|.|||+ .++|++|+|
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l~ 83 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGVL 83 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEEE
Confidence 45777779998 57999998866 455 67899999999986 799999999999999 789999999
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhhCCCCCCCC-CCCCcccchhHHHHHHhhhhcCChhhhHH
Q 030595 68 VADESSGRQIPMAFLERVKDEFVSKYGGGKAATA-PANGLNKEFGPKLKELMQYCVDHPEEISK 130 (175)
Q Consensus 68 it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~-~~~~l~~~F~~~l~~~~~~y~~~~~~~d~ 130 (175)
|||.+||+|+||.||++|+++|.++|+...|.++ ++++ ...| +.|.+.|++| +||.+.|+
T Consensus 84 i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 84 ITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 9999999999999999999999999975547653 3221 2355 7899999889 89987774
No 7
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.70 E-value=5.7e-18 Score=104.43 Aligned_cols=51 Identities=29% Similarity=0.529 Sum_probs=43.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 124 ~~~~~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
+|...|++.+++.+|+||+.||.+||+++|+|||+||.|++||++|+.+|+
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~ 54 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSE 54 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456679999999999999999999999999999999999999999998764
No 8
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.68 E-value=5.1e-17 Score=104.20 Aligned_cols=51 Identities=33% Similarity=0.470 Sum_probs=47.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 124 ~~~~~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
+|.+.|++.+++.+|+||+.||.+||+++|+|||+||.|++||++|+.+|+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~ 60 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGAS 60 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTST
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 445569999999999999999999999999999999999999999999986
No 9
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.67 E-value=3.9e-17 Score=100.17 Aligned_cols=47 Identities=34% Similarity=0.501 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
.|++.+++.+|+||+.||.+||+++|+|||+||.|++||++|+.+|+
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~ 49 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999998763
No 10
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.66 E-value=7.7e-17 Score=98.16 Aligned_cols=46 Identities=35% Similarity=0.614 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
|++.+++.+|+||+.||.+||+++|+|||+||.|++||++|+.+|+
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~ 47 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQ 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999998764
No 11
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.65 E-value=1.7e-17 Score=104.91 Aligned_cols=52 Identities=40% Similarity=0.564 Sum_probs=45.8
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 123 DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 123 ~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
++|.+.|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|+
T Consensus 2 ~~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~ 53 (74)
T 2nps_A 2 SMGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNAT 53 (74)
T ss_dssp ----CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3566679999999999999999999999999999999999999999998763
No 12
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.60 E-value=5.2e-16 Score=102.60 Aligned_cols=47 Identities=34% Similarity=0.501 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
.|+|.+++.+|+||++||.+||++||+|||+||+|++||++|+.+|+
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~ 75 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS 75 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999998763
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.60 E-value=5.1e-16 Score=101.85 Aligned_cols=47 Identities=34% Similarity=0.538 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
.|++.++|.+|+||++||.+||+++|+|||+||+|++||++|+.+|+
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~ 50 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS 50 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999998764
No 14
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.49 E-value=1.3e-15 Score=104.50 Aligned_cols=48 Identities=33% Similarity=0.492 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCCC
Q 030595 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQPF 174 (175)
Q Consensus 127 ~~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (175)
+.|++.++|.+|+||++||.+||+++|+|||+||+|++||++|+.+|+
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~ 78 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS 78 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999999999999999884
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.48 E-value=1.7e-14 Score=87.68 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhcCC
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQP 173 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s 173 (175)
.++..++.++++|++||.+||+++++|||+|+.|++||++|..+|
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A 48 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSA 48 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999998765
No 16
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.49 E-value=4.8e-08 Score=77.38 Aligned_cols=32 Identities=31% Similarity=0.735 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l 159 (175)
.|.+.++|++|+||++||.+|||++|+|||+|
T Consensus 279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 48999999999999999999999999999987
No 17
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.47 E-value=2.6e-11 Score=66.16 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge 157 (175)
.|++.++|.+|+||++||.+||+++|+||+
T Consensus 8 ~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 8 NRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 489999999999999999999999999997
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.97 E-value=7.8e-06 Score=59.69 Aligned_cols=86 Identities=19% Similarity=0.304 Sum_probs=61.9
Q ss_pred EEEEEEcCCeeeeeeccCCCC----HHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEecCCCCcchHHH
Q 030595 7 IYAFVARGNVVLAEYTEFSGN----FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMA 80 (175)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~~----~~~~~~~il~ki~~~~~k~~~~~~~~~~h~~~~~--~~~~~~it~~~~~~~~af~ 80 (175)
+++.+.+|+.||+.|+..... ...+++.++-.=... ..++++|+|...+..+| +++|+++-..-.+-.-+=.
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 678899999999999543322 556677766443222 24688999999987765 7999999777666666778
Q ss_pred HHHHHHHHHHhhhC
Q 030595 81 FLERVKDEFVSKYG 94 (175)
Q Consensus 81 fL~~i~~~F~~~~~ 94 (175)
||+.|+..|...|.
T Consensus 91 LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 91 LIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999985
No 19
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.017 Score=39.50 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=45.9
Q ss_pred HHHH-HHHHHccCCCCC-CeeE---EE-eCCeEEEEEE---eCCEEEEEEecCCCCcchHHHHHHHHHH
Q 030595 28 FNSI-AYQCLQKLPASN-NKFT---YN-CDAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (175)
Q Consensus 28 ~~~~-~~~il~ki~~~~-~k~~---~~-~~~~~~h~~~---~~~~~~~~it~~~~~~~~af~fL~~i~~ 87 (175)
|..+ ...++.++-+-+ +|++ .. .|||-++|.. +++.+|+|+|..+.|+-.+...|.++++
T Consensus 46 Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 46 FHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 5553 456777877652 3443 33 6899998876 3578999999999999999999999975
No 20
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.33 E-value=1.4 Score=30.83 Aligned_cols=90 Identities=11% Similarity=0.184 Sum_probs=58.2
Q ss_pred cEEEEEEEc--CCeeeeee-ccCCCCHH-HHHHHHHccCCCC--CCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchH
Q 030595 5 SLIYAFVAR--GNVVLAEY-TEFSGNFN-SIAYQCLQKLPAS--NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (175)
Q Consensus 5 ~I~Ya~Iar--~~~iLae~-~~~~~~~~-~~~~~il~ki~~~--~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~a 78 (175)
||....|.. |..+|+-+ ......+. .+.+.+.+.+... ..--.++.+++.|.|...+++.|+|+++.+.+.-..
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~ 80 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT 80 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 455555653 44666654 32222221 2333333222221 112356788999889888999999999999999999
Q ss_pred HHHHHHHHHHHHhhhC
Q 030595 79 MAFLERVKDEFVSKYG 94 (175)
Q Consensus 79 f~fL~~i~~~F~~~~~ 94 (175)
+.||..+.+-+..-++
T Consensus 81 le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 81 LELIHRYVELLDKYFG 96 (158)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999998888877664
No 21
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=93.33 E-value=1.2 Score=30.61 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=42.2
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhhC
Q 030595 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (175)
Q Consensus 47 ~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~af~fL~~i~~~F~~~~~ 94 (175)
.++.+++.|.|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 49 ~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 567889998898889999999999999999999999998888877664
No 22
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=91.91 E-value=2.3 Score=29.69 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=63.0
Q ss_pred ccEEEEEEEc--CCeeeeeeccCC-CCH---HHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcch
Q 030595 4 KSLIYAFVAR--GNVVLAEYTEFS-GNF---NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQI 77 (175)
Q Consensus 4 ~~I~Ya~Iar--~~~iLae~~~~~-~~~---~~~~~~il~ki~~~~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~ 77 (175)
.||.+.+|.. |.++|+-|=... ++. ....+.+..++.+.+. -.+..+++.+.|....++.|+++++.+.+.-.
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ 89 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELM 89 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHH
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHH
Confidence 3677777764 457777764321 222 1123334444433332 35678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 030595 78 PMAFLERVKDEFVSKY 93 (175)
Q Consensus 78 af~fL~~i~~~F~~~~ 93 (175)
.+.||..+...+..-+
T Consensus 90 ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 90 LMTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998888777
No 23
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.20 E-value=1.7 Score=35.31 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=59.0
Q ss_pred ccEEEEEEEcC--Ceeeeee-cc-CCCC-HHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcchH
Q 030595 4 KSLIYAFVARG--NVVLAEY-TE-FSGN-FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (175)
Q Consensus 4 ~~I~Ya~Iar~--~~iLae~-~~-~~~~-~~~~~~~il~ki~~~~~k~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~a 78 (175)
|||...+|.-. ..+|+-+ .. ...+ .+..-+.++.+......--.++.+++.|.|...+++.|+|+++.+.+.-..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 57777777643 3555543 22 1222 223334444332211112356788999999989999999999999999999
Q ss_pred HHHHHHHHHHHHhhhC
Q 030595 79 MAFLERVKDEFVSKYG 94 (175)
Q Consensus 79 f~fL~~i~~~F~~~~~ 94 (175)
+.||..+.+-+..-++
T Consensus 81 le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999888776653
No 24
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=90.31 E-value=6.1 Score=32.18 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=42.8
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhhC
Q 030595 46 FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (175)
Q Consensus 46 ~~~~~~~~~~h~~~~~~~~~~~it~~~~~~~~af~fL~~i~~~F~~~~~ 94 (175)
-.++.+++.|.|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999998899999999999999999999999998888777664
No 25
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=90.22 E-value=3.2 Score=28.44 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=66.9
Q ss_pred EEEEEEEcCCeeeeeec--cCCC-----C----HH---HHHHHHHccCCCC-CC---eeEEEeCCeEEE-EEEeCCEEEE
Q 030595 6 LIYAFVARGNVVLAEYT--EFSG-----N----FN---SIAYQCLQKLPAS-NN---KFTYNCDAHTFN-YLVDNGYTYC 66 (175)
Q Consensus 6 I~Ya~Iar~~~iLae~~--~~~~-----~----~~---~~~~~il~ki~~~-~~---k~~~~~~~~~~h-~~~~~~~~~~ 66 (175)
...+.|.|.+.+|-+.. .... + +. --+..+++++.+. ++ +.+...++|..| |....|+=|+
T Consensus 7 ~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kfv 86 (142)
T 2j3w_A 7 FYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFI 86 (142)
T ss_dssp EEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEE
T ss_pred EEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEEE
Confidence 44466777777777663 2211 1 11 1223344444332 22 345556787766 5556899999
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhCCCCCCC-CCCCCcccchhHHHHHHhhhh
Q 030595 67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYC 121 (175)
Q Consensus 67 ~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~l~~~F~~~l~~~~~~y 121 (175)
.++++. ...-.-.||.+|...|..... +.+-. ..|-. ...|+..++++++.|
T Consensus 87 l~~d~~-~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~-s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 87 MLHDVR-QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIR-SSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEESSC-CHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCC-CHHHHHHHHHHHHHH
T ss_pred EEeCCC-CcHHHHHHHHHHHHHHHHHhc-CCCCCCCCcee-cHHHHHHHHHHHHHh
Confidence 999873 234566889999988877543 33222 12222 367899999988766
No 26
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=87.19 E-value=5.6 Score=27.37 Aligned_cols=87 Identities=10% Similarity=0.145 Sum_probs=57.3
Q ss_pred HHHHHccCCCC---CCeeEEEeCCeEEEE-EEeCCEEEEEEecCCCCcchHHHHHHHHH-HHHHhhhCCCCCCC-CCCCC
Q 030595 32 AYQCLQKLPAS---NNKFTYNCDAHTFNY-LVDNGYTYCVVADESSGRQIPMAFLERVK-DEFVSKYGGGKAAT-APANG 105 (175)
Q Consensus 32 ~~~il~ki~~~---~~k~~~~~~~~~~h~-~~~~~~~~~~it~~~~~~~~af~fL~~i~-~~F~~~~~~~~~~~-~~~~~ 105 (175)
+..+.+++.|. ..-.+++.++|..|+ ..-.|+=|+.+|++..+. .-.||.+|. ..|.+-.-.+..-. ..|-.
T Consensus 45 l~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~ 122 (145)
T 2j3t_C 45 IRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGP--IRDVLHHIYSALYVEFVVKNPLCPLGQTVQ 122 (145)
T ss_dssp HHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCCC--CHHHHHHHHHTTHHHHTTTCTTSCTTSCCC
T ss_pred HHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcch--HHHHHHHHHHHHHHHHHhcCCCCCCCCcee
Confidence 35566676664 245677888987775 445799999999987543 557899999 67776332232211 12222
Q ss_pred cccchhHHHHHHhhhh
Q 030595 106 LNKEFGPKLKELMQYC 121 (175)
Q Consensus 106 l~~~F~~~l~~~~~~y 121 (175)
...|+..++.+++.+
T Consensus 123 -s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 123 -SELFRSRLDSYVRSL 137 (145)
T ss_dssp -CHHHHHHHHHHHTTS
T ss_pred -cHHHHHHHHHHHHhC
Confidence 367899999888654
No 27
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=85.64 E-value=9.1 Score=28.35 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=58.3
Q ss_pred HHHHHccCCCCC---CeeEEEeCCeEEEE-EEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhhCCCCCCC-CCCCCc
Q 030595 32 AYQCLQKLPASN---NKFTYNCDAHTFNY-LVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGL 106 (175)
Q Consensus 32 ~~~il~ki~~~~---~k~~~~~~~~~~h~-~~~~~~~~~~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~l 106 (175)
...+.+++.|.+ .-.+++.+.|..|+ ....|+-|+.++++. ..-.-.||.+|...|....-.+.+-. ..|-.
T Consensus 118 Ld~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~- 194 (219)
T 2j3t_D 118 LFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR- 194 (219)
T ss_dssp HHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-
T ss_pred HHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-
Confidence 345566777642 33577888988775 455799999999986 44556789999988877532232221 12222
Q ss_pred ccchhHHHHHHhhhh
Q 030595 107 NKEFGPKLKELMQYC 121 (175)
Q Consensus 107 ~~~F~~~l~~~~~~y 121 (175)
...|+..++.+++.+
T Consensus 195 s~~Fd~~v~~l~~~~ 209 (219)
T 2j3t_D 195 CELFDQNLKLALEVA 209 (219)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 368999999999776
No 28
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=84.04 E-value=8.2 Score=28.57 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=48.3
Q ss_pred eeEEEeCCeEEE-EEEeCCEEEEEEecCCCCc----------------------chHHHHHHHHHHHHHhhhCCCCCCC-
Q 030595 45 KFTYNCDAHTFN-YLVDNGYTYCVVADESSGR----------------------QIPMAFLERVKDEFVSKYGGGKAAT- 100 (175)
Q Consensus 45 k~~~~~~~~~~h-~~~~~~~~~~~it~~~~~~----------------------~~af~fL~~i~~~F~~~~~~~~~~~- 100 (175)
-..+..+.|..| |..-.|+=|++++++..+. ...-.||.+|...|.+..-.+.+-.
T Consensus 119 ~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~ 198 (219)
T 3cue_A 119 LRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSM 198 (219)
T ss_dssp CCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCT
T ss_pred eEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 346677777766 4556899999999987633 4467899999988877332122211
Q ss_pred CCCCCcccchhHHHHHHhhhh
Q 030595 101 APANGLNKEFGPKLKELMQYC 121 (175)
Q Consensus 101 ~~~~~l~~~F~~~l~~~~~~y 121 (175)
.-+-. ...|+..++.+++.+
T Consensus 199 ~~pI~-S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 199 EMPIR-SNLFDEKVKKMVENL 218 (219)
T ss_dssp TSCCC-CHHHHHHHHHHHHHH
T ss_pred CCccc-cHHHHHHHHHHHHhc
Confidence 11111 267888888877654
No 29
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=81.01 E-value=11 Score=26.26 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=54.6
Q ss_pred HHHHHccCCCCC---CeeEEEeCCeEEEEE-EeCCEEEEEEecCCCCcchHHHHHHHHHH-HHHhhhCCCC-----CCCC
Q 030595 32 AYQCLQKLPASN---NKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVKD-EFVSKYGGGK-----AATA 101 (175)
Q Consensus 32 ~~~il~ki~~~~---~k~~~~~~~~~~h~~-~~~~~~~~~it~~~~~~~~af~fL~~i~~-~F~~~~~~~~-----~~~~ 101 (175)
++.+.+++.|.+ .-.+++.+.|..|+. .-.|+-|++++|+..+ -.-.+|.+|.. .|..-.-.+. +...
T Consensus 51 L~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~ 128 (159)
T 3cue_C 51 LRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVKYVSNNLLSPYDFAEN 128 (159)
T ss_dssp HHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHHHHHSCTTSCCSCCCS
T ss_pred HHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 356777777653 445667788887755 4579999999998744 34467888886 7766221121 1111
Q ss_pred ---------CCCCcccchhHHHHHHhhhh
Q 030595 102 ---------PANGLNKEFGPKLKELMQYC 121 (175)
Q Consensus 102 ---------~~~~l~~~F~~~l~~~~~~y 121 (175)
.|-. ...|+..|+++++.+
T Consensus 129 ~~~~~~~~~~pI~-s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 129 ENEMRGQGTRKIT-NRNFISVLESFLAPM 156 (159)
T ss_dssp CTTTTTSCCCCCC-CHHHHHHHHHHTSCC
T ss_pred ccccccccCcCcc-cHHHHHHHHHHHHhc
Confidence 1111 267888888887654
No 30
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=79.33 E-value=4.1 Score=24.97 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=37.2
Q ss_pred HHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 030595 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (175)
Q Consensus 112 ~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~R 155 (175)
+.....++.|+.+|.......++++-++....-=+.||.++|++
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667778887888888999999999998888888999988875
No 31
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=76.52 E-value=3.5 Score=24.75 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=36.2
Q ss_pred HHHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 030595 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (175)
Q Consensus 112 ~~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~R 155 (175)
+.....++.|+.+|.......++++-++....-=+.||.++|++
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566778887888888999999999998888888888888875
No 32
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=75.69 E-value=2.7 Score=20.33 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhH
Q 030595 133 KVKAQVSEVKGVMMENIEKVLDRGEKIE 160 (175)
Q Consensus 133 ~i~~~l~~v~~im~~ni~~il~Rge~l~ 160 (175)
.++.++.++| .+||.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 4566666654 47888888877664
No 33
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=71.82 E-value=7.7 Score=25.14 Aligned_cols=43 Identities=14% Similarity=0.431 Sum_probs=32.0
Q ss_pred cEEEEEEEcCCeeeeeeccCCCCHHHHHHHHHccCCCCCCeeEEEeCCeEEEEEE
Q 030595 5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLV 59 (175)
Q Consensus 5 ~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~ki~~~~~k~~~~~~~~~~h~~~ 59 (175)
-|.|..|++++ +|+++++.| +++.-+..--+++++|..||...
T Consensus 85 giiyltiskdn--icqfsdekg----------eqidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 85 GIIYLTISKDN--ICQFSDEKG----------EQIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEEECTTC--CEEEECTTS----------CEECCCSSSSEEEETTEEEEEEE
T ss_pred cEEEEEEecCc--ceecccccC----------cEeeccccccceeecceEeehhc
Confidence 38899999987 589988776 24444433458999999999853
No 34
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=63.90 E-value=21 Score=22.80 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhc
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 171 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~ 171 (175)
.-...+..+|++++.-|.+=|+.+=.+=..||.+..++..|..
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3556788999999999999999999999999999888887754
No 35
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=58.80 E-value=7.9 Score=24.68 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=34.6
Q ss_pred HHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 030595 113 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (175)
Q Consensus 113 ~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~R 155 (175)
..+..++.|+.+|.......++++-+++....=+.||.++|++
T Consensus 41 ~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 41 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455667887788888999999999998888888888888764
No 36
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=58.72 E-value=20 Score=24.93 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=33.6
Q ss_pred HHHHHHhhhhcCChhhhHHHHHHHHHHH-HHHHHHHHhHHHHHHh
Q 030595 112 PKLKELMQYCVDHPEEISKLAKVKAQVS-EVKGVMMENIEKVLDR 155 (175)
Q Consensus 112 ~~l~~~~~~y~~~~~~~d~l~~i~~~l~-~v~~im~~ni~~il~R 155 (175)
+.....++.|+.+|.......++++-++ ....-=+.||.++|++
T Consensus 20 eeYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 20 DEYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 3456677788788888899999999999 6666666677777665
No 37
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=58.67 E-value=26 Score=20.71 Aligned_cols=40 Identities=15% Similarity=0.354 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~ 168 (175)
..+.+|...|.|+.+++.+==.-+-+-|+-||.+....+.
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 45 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVES 45 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788889999999999888888888888888888766544
No 38
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=57.29 E-value=21 Score=22.07 Aligned_cols=57 Identities=9% Similarity=0.248 Sum_probs=43.5
Q ss_pred HHHHHhhhhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhhc
Q 030595 113 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 171 (175)
Q Consensus 113 ~l~~~~~~y~~~~~~~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~~ 171 (175)
.++..+.+. .+ ...+.....-.-+++.+.+...++..+..-||+|+......+.+..
T Consensus 13 ~l~~~~~~~-~~-esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~ 69 (83)
T 1l4a_C 13 EIQQQCNQV-TD-DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQ 69 (83)
T ss_dssp HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333 23 3357888888889999999999999999999999998887776654
No 39
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=56.86 E-value=13 Score=22.19 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhh
Q 030595 135 KAQVSEVKGVMMENIEKVLDRG 156 (175)
Q Consensus 135 ~~~l~~v~~im~~ni~~il~Rg 156 (175)
..+++++++|+..|+.++=+|.
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999988774
No 40
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=55.74 E-value=29 Score=20.38 Aligned_cols=40 Identities=18% Similarity=0.387 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~ 168 (175)
+.+.+|.+.+.|+.+++.+==..+.+-|+.||.+....+.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 49 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVED 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6788999999999999998888888999999888776554
No 41
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=53.66 E-value=27 Score=19.49 Aligned_cols=37 Identities=8% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhh
Q 030595 134 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170 (175)
Q Consensus 134 i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~ 170 (175)
...-+.|+.++..+.+..+-..||.|+.....-++..
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~ 41 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQIN 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHH
Confidence 4556777888888888888888888887776655543
No 42
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=53.52 E-value=34 Score=20.51 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~ 168 (175)
+.+.+|.+.+.|+.+++.+==..+.+-|+-||.+....+.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 49 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEH 49 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788899999999999988888888899988887665443
No 43
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=52.68 E-value=19 Score=17.33 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 030595 128 ISKLAKVKAQVSEVKGVMMEN 148 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~n 148 (175)
.+++.-++..|+|-++|..++
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999998775
No 44
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=52.51 E-value=33 Score=20.04 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~ 168 (175)
+.+.+|.+.+.|+.+++.+==..+.+-|+.||.+....+.
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 51 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEH 51 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6789999999999999998888888999999988776554
No 45
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=50.48 E-value=35 Score=19.76 Aligned_cols=40 Identities=13% Similarity=0.322 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~ 168 (175)
..+.+|.+.+.++.+++.+==.-+-+-|+.||.+....+.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 48 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVES 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999988888888899999888776554
No 46
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=47.88 E-value=50 Score=20.78 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhH
Q 030595 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTE 167 (175)
Q Consensus 128 ~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~ 167 (175)
..++..+-..+..++--|..+|++-.+|-+.|-+|.+|-.
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls 71 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKIS 71 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888888888888888877777754
No 47
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=44.36 E-value=52 Score=19.97 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHhhh
Q 030595 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170 (175)
Q Consensus 127 ~~d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~L~ 170 (175)
..+.+.....-+.|+.++-...+..+-..||.|+.....-++..
T Consensus 21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~ 64 (79)
T 1n7s_C 21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHIN 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Confidence 34888888999999999999999999999999998877766544
No 48
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=41.67 E-value=68 Score=20.61 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~ 168 (175)
+.+.++++.+.|+.+++.+==..+-+-|+.+|.+....++
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~ 60 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEH 60 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6788889999999998888878888888888888776554
No 49
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=39.52 E-value=63 Score=19.60 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHh
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~~ 168 (175)
..+.+|...+.|+.+++.+==.-+-+-|+-||.+....+.
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~ 60 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEH 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6789999999999999988888888899998888765543
No 50
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.14 E-value=80 Score=21.13 Aligned_cols=24 Identities=0% Similarity=0.245 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKV 152 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~i 152 (175)
|.++++|..|++.-..|...|.-+
T Consensus 3 DrlTQLQd~ldqla~~f~nsig~L 26 (132)
T 1ykh_B 3 DRMTQLQICLDQMTEQFCATLNYI 26 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888743
No 51
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=24.72 E-value=1.3e+02 Score=18.59 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=20.7
Q ss_pred CChhhhHHHHHHHHHHHH----------HHHHHHHhHHHHHHh
Q 030595 123 DHPEEISKLAKVKAQVSE----------VKGVMMENIEKVLDR 155 (175)
Q Consensus 123 ~~~~~~d~l~~i~~~l~~----------v~~im~~ni~~il~R 155 (175)
.+|.+...|.+.|..+.| +...|++....||+.
T Consensus 39 ~~PsnPa~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~sI~~~ 81 (85)
T 2ca5_A 39 KNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAILEH 81 (85)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356555677777777766 455566666666653
No 52
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=24.48 E-value=1e+02 Score=17.28 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 030595 129 SKLAKVKAQVSEVKGVMMEN 148 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~n 148 (175)
+.+..++++++-+.++..+|
T Consensus 7 ~sl~~l~~ql~sla~vvlQN 26 (53)
T 1y4m_A 7 KALTTMQEQIDSLAAVVLQN 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999988877
No 53
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=24.39 E-value=1.3e+02 Score=18.81 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHH---HHHHhHHHHHHhh
Q 030595 130 KLAKVKAQVSEVKG---VMMENIEKVLDRG 156 (175)
Q Consensus 130 ~l~~i~~~l~~v~~---im~~ni~~il~Rg 156 (175)
++.+++.+|.++.. -|..-|+.+|+|-
T Consensus 3 nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~~ 32 (95)
T 3k4t_A 3 NLNQIQKEVSEILSDQKSMKADIKAILELL 32 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777653 4666777777764
No 54
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=23.72 E-value=44 Score=18.47 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q 030595 129 SKLAKVKAQVSEVKG 143 (175)
Q Consensus 129 d~l~~i~~~l~~v~~ 143 (175)
+++.+++.++++|+.
T Consensus 32 ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 32 ERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 899999999999864
No 55
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=22.00 E-value=2.2e+02 Score=24.38 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=28.3
Q ss_pred eCCeEEEEEEeCC-EEEEEEecCCCCcchHHHHHHHHHHHHHh
Q 030595 50 CDAHTFNYLVDNG-YTYCVVADESSGRQIPMAFLERVKDEFVS 91 (175)
Q Consensus 50 ~~~~~~h~~~~~~-~~~~~it~~~~~~~~af~fL~~i~~~F~~ 91 (175)
-|||-++|.+.++ +.|.+.+-.+++.+-+-.|.+.|.+.+..
T Consensus 566 ~dGyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~d 608 (639)
T 1t1u_A 566 PNGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVD 608 (639)
T ss_dssp TTCEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEcCCeEEEEEEeCCCCcccCHHHHHHHHHHHHHH
Confidence 3689999987654 55444445777777777777777665543
No 56
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=21.55 E-value=2.3e+02 Score=24.14 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=28.1
Q ss_pred eCCeEEEEEEeCC-EEEEEEecCCCCcchHHHHHHHHHHHHHh
Q 030595 50 CDAHTFNYLVDNG-YTYCVVADESSGRQIPMAFLERVKDEFVS 91 (175)
Q Consensus 50 ~~~~~~h~~~~~~-~~~~~it~~~~~~~~af~fL~~i~~~F~~ 91 (175)
-|||-++|.+.++ +.|.+.+-.++|.+-+-.|.+.|.+.+..
T Consensus 550 ~dGyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~d 592 (616)
T 1nm8_A 550 PDGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYLEKALLD 592 (616)
T ss_dssp TTCEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHHH
T ss_pred CCeeEEEEEecCCeEEEEEEeCCCCccccHHHHHHHHHHHHHH
Confidence 3689999987654 55544445677777777777776665543
No 57
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=21.36 E-value=2.2e+02 Score=21.14 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhH
Q 030595 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTE 167 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~~ni~~il~Rge~l~~L~~ks~ 167 (175)
..++.+...++++.+.....-..+-...++|.+|.+.+.
T Consensus 13 ErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iR 51 (233)
T 2yko_A 13 ERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVK 51 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566777777777777666666666677777777777653
No 58
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=20.77 E-value=1.4e+02 Score=19.37 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=33.0
Q ss_pred ccCCCCHHHHHHHHHc----cCCC-CCCeeEEEeCC-eEEEEEE--eCCEEEEEEecCCCCcchH
Q 030595 22 TEFSGNFNSIAYQCLQ----KLPA-SNNKFTYNCDA-HTFNYLV--DNGYTYCVVADESSGRQIP 78 (175)
Q Consensus 22 ~~~~~~~~~~~~~il~----ki~~-~~~k~~~~~~~-~~~h~~~--~~~~~~~~it~~~~~~~~a 78 (175)
...-.+|+.+...+-+ +++. ..-|..++.+| ..++-+. ++|-.|+|.. .+-.+++.
T Consensus 37 ~~~~~tfd~LL~~lT~~Ls~~v~lp~GVR~lyt~~G~~~I~sl~dL~dG~~YVc~~-~e~fk~i~ 100 (113)
T 1mg4_A 37 PDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCGS-IEPFKKLE 100 (113)
T ss_dssp TTTCSSHHHHHHHHHHHHCCSSSSTTCCCEEEETTSSCBCCSGGGCCTTCEEEEES-SSCCCCCC
T ss_pred ccccCCHHHHHHHHHHHHhhcCCCCcceeEEEcCCCCeEcCCHHHhhCCCEEEEeC-CCCceecC
Confidence 3345678877766633 3332 23577888887 6655433 4788999954 44444443
No 59
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=20.23 E-value=2.3e+02 Score=19.74 Aligned_cols=90 Identities=10% Similarity=0.225 Sum_probs=51.0
Q ss_pred ccEEEEEEEcCCeeeeeeccCCC-----C---HH---HHHHHHHccCC--CC--C----CeeEEEeCCeE-EEEE-EeCC
Q 030595 4 KSLIYAFVARGNVVLAEYTEFSG-----N---FN---SIAYQCLQKLP--AS--N----NKFTYNCDAHT-FNYL-VDNG 62 (175)
Q Consensus 4 ~~I~Ya~Iar~~~iLae~~~~~~-----~---~~---~~~~~il~ki~--~~--~----~k~~~~~~~~~-~h~~-~~~~ 62 (175)
.+-.=|.|+|.+.||..++..++ + |. -.+..+++.-. +. + -+..+..+++. |.|+ ...+
T Consensus 9 ~~~FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~ 88 (162)
T 3pr6_A 9 RPCFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTG 88 (162)
T ss_dssp CCSEEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTC
T ss_pred cCeEEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCc
Confidence 34455688899999988864332 1 22 23455555322 11 1 24456667764 5687 6788
Q ss_pred EEEEEEecCC----CCc--chHHHHHHHHHHHHHhhh
Q 030595 63 YTYCVVADES----SGR--QIPMAFLERVKDEFVSKY 93 (175)
Q Consensus 63 ~~~~~it~~~----~~~--~~af~fL~~i~~~F~~~~ 93 (175)
+=|+++.+.. ... ...-.|..+++..|.+..
T Consensus 89 vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l 125 (162)
T 3pr6_A 89 LKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVK 125 (162)
T ss_dssp CEEEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEccCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 8888877753 222 344556666666665544
No 60
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=20.17 E-value=85 Score=14.80 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030595 129 SKLAKVKAQVSEVKGVMM 146 (175)
Q Consensus 129 d~l~~i~~~l~~v~~im~ 146 (175)
.-+..++..+.++++-|.
T Consensus 5 ei~~kiK~kl~~akdK~k 22 (26)
T 2kfe_A 5 EFMSNLKEKLSGVKEKMK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777777777664
Done!