BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030598
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HU5|A Chain A, Crystal Structure Of Isochorismatase Family Protein From
Desulfovibrio Vulgaris Subsp. Vulgaris Str.
Hildenborough
pdb|3HU5|B Chain B, Crystal Structure Of Isochorismatase Family Protein From
Desulfovibrio Vulgaris Subsp. Vulgaris Str.
Hildenborough
Length = 204
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 4 TKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPL 63
T+ AL +ID QNDF+L V+G VP + + AR G V+ VVR H
Sbjct: 4 TRNRTVALAIIDXQNDFVLPGAPACVEGAXGTVPVIAGLLAKARAEGWXVLHVVRAHRAD 63
Query: 64 GRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLR 123
G D E R+HL+ G G G+PGAE+V GLE G+ +VK RFSAF T + LR
Sbjct: 64 GSDAEKSREHLFLEGG-GLCVAGTPGAEIVAGLEPASGETVLVKTRFSAFXGTECDXLLR 122
Query: 124 TAGIDSLVIVGVQTPNCIRQTVFDAVELDY 153
G+D+L++ G Q PNCIR T DA LDY
Sbjct: 123 RRGVDTLLVSGTQYPNCIRGTAVDAFALDY 152
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
pdb|3EEF|B Chain B, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
Length = 182
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVEL 69
AL+V+D N+FI G + V K +E R+ G+ VV+V H P ++ +
Sbjct: 4 ALVVVDXVNEFI--HGRLATPEAXKTVGPARKVIETFRRSGLPVVYVNDSHYPDDPEIRI 61
Query: 70 FRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDS 129
+ +H + KG G+E++D + GDY + K +S F+ T+L+ LR GID+
Sbjct: 62 WGRH---------SXKGDDGSEVIDEIRPSAGDYVLEKHAYSGFYGTNLDXILRANGIDT 112
Query: 130 LVIVGVQTPNCIRQTVFDAVELDYK 154
+V++G+ C+R T DA+ +Y+
Sbjct: 113 VVLIGLDADICVRHTAADALYRNYR 137
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|C Chain C, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|B Chain B, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|D Chain D, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|E Chain E, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|F Chain F, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|G Chain G, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|H Chain H, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
Length = 204
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 12/148 (8%)
Query: 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQH---GILVVWVVREHDPLGRD 66
A+LVID NDF+ + +R GG+ I+P++ K E R I +V + H D
Sbjct: 9 AILVIDXLNDFVGEKAPLRCPGGETIIPDLQKIFEWVRGREGDDIHLVHIQEAHRKNDAD 68
Query: 67 VELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAG 126
+ H KG+ G++ + L +E +Y V K R S F T L+ +L+ G
Sbjct: 69 FRVRPLH---------AVKGTWGSDFIPELYPQEDEYIVQKRRHSGFAHTDLDLYLKEEG 119
Query: 127 IDSLVIVGVQTPNCIRQTVFDAVELDYK 154
ID++V+ GV T C+R T DA+ YK
Sbjct: 120 IDTVVLTGVWTNVCVRSTATDALANAYK 147
>pdb|3IRV|A Chain A, Crystal Structure Of Cysteine Hydrolase Pspph_2384 From
Pseudomonas Syringae Pv. Phaseolicola 1448a
Length = 233
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Query: 9 TALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVE 68
TA++V+DMQ F G + V IV + K ++ AR ++V+++ G D
Sbjct: 23 TAVIVVDMQKVFCEPTGALYVKSTADIVQPIQKLLQAARAAQVMVIYLRHIVRGDGSDTG 82
Query: 69 LFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGID 128
R + + ++ P E+++ L + D V K+ +S F T L++ LR +D
Sbjct: 83 RMRDLYPNVDQI--LARHDPDVEVIEALAPQSDDVIVDKLFYSGFHNTDLDTVLRARDVD 140
Query: 129 SLVIVGVQTPNCIRQTVFDAVELDYK 154
++++ G T C T+ D V +YK
Sbjct: 141 TIIVCGTVTNVCCETTIRDGVHREYK 166
>pdb|1NBA|A Chain A, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|B Chain B, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|C Chain C, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|D Chain D, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
Length = 264
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVW---VVREHDPL 63
N A++ ID+ N + G + I+PNV + E AR G+ V + V R D
Sbjct: 43 NRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDAS 102
Query: 64 G--RDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSF 121
D+ L+ YS S A++ D + +G+ + K R SAF T+L F
Sbjct: 103 SGTNDMGLW----YSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELF 158
Query: 122 LRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYK 154
L + ID+L++ G C+R TV DA+ ++
Sbjct: 159 LTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFR 191
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus
Horikoshii In Complex With Zinc
pdb|1ILW|A Chain A, Crystal Structure Of PyrazinamidaseNICOTINAMIDASE OF
Pyrococcus Horikoshii
Length = 180
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 18/149 (12%)
Query: 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVEL 69
AL+V+DMQ DF + G + V G I+P V + + ++ G L+V R+ P
Sbjct: 5 ALIVVDMQRDF-MPGGALPVPEGDKIIPKVNEYIRKFKEKGALIV-ATRDWHP------- 55
Query: 70 FRQHLYSTGTVGPTSK----GSPGAELVDGLE----IKEGDYKVVKMRFSAFFATHLNSF 121
H+ GP + +PGAE V L I + K +S F T L
Sbjct: 56 -ENHISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIISKATEPDKEAYSGFEGTDLAKI 114
Query: 122 LRTAGIDSLVIVGVQTPNCIRQTVFDAVE 150
LR G+ + I GV T C+R T DA++
Sbjct: 115 LRGNGVKRVYICGVATEYCVRATALDALK 143
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|B Chain B, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|C Chain C, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|D Chain D, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
Length = 217
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 8 NTALLVIDMQNDFILDDGLMRVDGGK---AIVPNVIKAVEIARQHGILVVWVVREHDP-- 62
+ AL+ ID DF+ DDG ++ GK AI + + + A +G + + + HD
Sbjct: 36 SKALISIDYTYDFVADDG--KLTAGKPAQAISKAIAQVTQKAYDNGDYIFFTIDGHDEGD 93
Query: 63 -LGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVV---KMRFSAFFATHL 118
+ +LF H GT G G+ L D + E D +V K +SAF T L
Sbjct: 94 DFHPETKLFPPHNIK-GTSGRDLYGA----LADFYQKHENDKRVFWMDKRHYSAFSGTDL 148
Query: 119 NSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYK 154
+ LR +D++V+ GV T C+ T DA L Y+
Sbjct: 149 DIRLRERRVDTVVLTGVLTDICVLHTAIDAYNLGYQ 184
>pdb|3KL2|A Chain A, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|B Chain B, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|C Chain C, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|D Chain D, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|E Chain E, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|F Chain F, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|G Chain G, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|H Chain H, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|I Chain I, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|J Chain J, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|K Chain K, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|L Chain L, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
Length = 226
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 17/158 (10%)
Query: 9 TALLVIDMQNDFILDDGLMR-----VDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPL 63
TA+++I+ QN+F D G++ V ++ N + V+ ARQ G+ ++ H P+
Sbjct: 26 TAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIM-----HAPI 80
Query: 64 --GRDVELFRQHLYS--TGTVGPTS--KGSPGAELVDGLEIKEGDYKVVKMR-FSAFFAT 116
+H Y G V + KG+ GA +VD L GD + R F +T
Sbjct: 81 TFAEGYGELTRHPYGILKGVVDGKAFVKGTWGAAIVDELAPVNGDIVIEGKRGLDTFAST 140
Query: 117 HLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYK 154
+L+ LR+ G+D++V+ G T C+ T+ E ++
Sbjct: 141 NLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFR 178
>pdb|3LQY|A Chain A, Crystal Structure Of Putative Isochorismatase Hydrolase
From Oleispira Antarctica
Length = 190
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 4 TKFNNTALLVIDMQNDFI--LDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHD 61
T N TALL+ID QND+ + + G +A K + RQ G+ VV V
Sbjct: 3 TTENTTALLLIDFQNDYFSTYNGAKNPLVGTEAAAEQGAKLLAKFRQQGLPVVHV----- 57
Query: 62 PLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSF 121
+H + T GS GA++ + +EG+ V+K + ++F T L
Sbjct: 58 ----------RHEFPTDEAPFFLPGSDGAKIHPSVAAQEGEAVVLKHQINSFRDTDLKKV 107
Query: 122 LRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYK 154
L AGI LVIVG T I A +L Y+
Sbjct: 108 LDDAGIKKLVIVGAXTHXXIDAVTRAAEDLGYE 140
>pdb|2H0R|A Chain A, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|B Chain B, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|C Chain C, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|D Chain D, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|E Chain E, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|F Chain F, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|G Chain G, Structure Of The Yeast Nicotinamidase Pnc1p
Length = 216
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQ--HGILVV--WVVREHDPLGR 65
L+V+DMQNDFI G + V G+ ++ + ++ A + H I+V W H +
Sbjct: 3 TLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISFAK 62
Query: 66 ---DVELFRQHLYSTGTVGPTS------------KGSPGAELVDGL---------EIKEG 101
D E + + Y + G S K + G++LVD + +I +
Sbjct: 63 NHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIVDK 122
Query: 102 DYKVVKMRFSAFF------ATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKS 155
+ + +SAF T +N +L D + IVGV C++ T A EL YK+
Sbjct: 123 GFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCVKATAISAAELGYKT 182
>pdb|2A67|A Chain A, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|B Chain B, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|C Chain C, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|D Chain D, Crystal Structure Of Isochorismatase Family Protein
Length = 167
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 22/146 (15%)
Query: 8 NTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDV 67
N ALL+ID Q ++ ++ A++ V + + + RQH +++V E L
Sbjct: 4 NRALLLIDFQKG--IESPTQQLYRLPAVLDKVNQRIAVYRQHHAPIIFVQHEETEL---- 57
Query: 68 ELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGI 127
GS +L + L+ + D+ + K +AF+ T+LN L +
Sbjct: 58 ----------------PFGSDSWQLFEKLDTQPTDFFIRKTHANAFYQTNLNDLLTEQAV 101
Query: 128 DSLVIVGVQTPNCIRQTVFDAVELDY 153
+L I GVQT C+ T+ A L Y
Sbjct: 102 QTLEIAGVQTEFCVDTTIRXAHGLGY 127
>pdb|4H17|A Chain A, Crystal Structure Of An Isochorismatase (Pp1826) From
Pseudomonas Putida Kt2440 At 1.60 A Resolution
pdb|4H17|B Chain B, Crystal Structure Of An Isochorismatase (Pp1826) From
Pseudomonas Putida Kt2440 At 1.60 A Resolution
Length = 197
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 5 KFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLG 64
K ++ +L++ID Q +++ G +++ G V N+ + ++ AR+ G ++ V
Sbjct: 20 KLSHASLIIIDAQKEYL--SGPLKLSGXDEAVANIARLLDAARKSGRPIIHV-------- 69
Query: 65 RDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRT 124
+HL + G G P + + GLE EG+ + K +AF T L+ L+
Sbjct: 70 -------RHLGTVG--GRFDPQGPAGQFIPGLEPLEGEIVIEKRXPNAFKNTKLHETLQE 120
Query: 125 AGIDSLVIVGVQTPNCIRQTVFDAVELDYKS 155
G L++ G + + + TV A + Y+
Sbjct: 121 LGHLDLIVCGFXSHSSVSTTVRRAKDYGYRC 151
>pdb|3TB4|A Chain A, Crystal Structure Of The Isc Domain Of Vibb
Length = 223
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 21/152 (13%)
Query: 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEI----ARQHGILVVWVVR--EH 60
+ LL+ DMQ F+ D +P++IK ++ A+Q GI VV+ +
Sbjct: 27 SRAVLLIHDMQEYFV-----HYFDSQAEPIPSLIKHIQQLKAHAKQAGIPVVYTAQPANQ 81
Query: 61 DPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNS 120
DP R + + G T+ +P L + GD ++ K R+SAF + L
Sbjct: 82 DPAERAL---LSDFWGPGLSEETAIIAP-------LAPESGDVQLTKWRYSAFKKSPLLD 131
Query: 121 FLRTAGIDSLVIVGVQTPNCIRQTVFDAVELD 152
+LR G D L+I GV I T DA D
Sbjct: 132 WLRETGRDQLIITGVYAHIGILSTALDAFMFD 163
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The
Pyrazinamidase From M.Tuberculosis : A
Structure-Function Analysis For Prediction Resistance To
Pyrazinamide
Length = 186
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVEL 69
AL+++D+QNDF + G + V GG A+ + + A + +V DP
Sbjct: 3 ALIIVDVQNDFC-EGGSLAVTGGAALARAISDYLAEAADYHHVVATKDFHIDPGDH---F 58
Query: 70 FRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFA---------THLNS 120
YS+ G+PGA+ L+ + K ++ ++ T L +
Sbjct: 59 SGTPDYSSSWPPHCVSGTPGADFHPSLDTSAIEAVFYKGAYTGAYSGFEGVDENGTPLLN 118
Query: 121 FLRTAGIDSLVIVGVQTPNCIRQTVFDAV 149
+LR G+D + +VG+ T +C+RQT DAV
Sbjct: 119 WLRQRGVDEVDVVGIATDHCVRQTAEDAV 147
>pdb|3R77|A Chain A, Crystal Structure Of The D38a Mutant Of Isochorismatase
Phzd From Pseudomonas Fluorescens 2-79 In Complex With
2-Amino-2- Desoxyisochorismate Adic
pdb|3R77|B Chain B, Crystal Structure Of The D38a Mutant Of Isochorismatase
Phzd From Pseudomonas Fluorescens 2-79 In Complex With
2-Amino-2- Desoxyisochorismate Adic
Length = 209
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 81 GPTSKGSP-GAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGV 135
GP K SP E+VD L + GD+ + K R+SAFF + L L +G D L++ GV
Sbjct: 97 GPGMKASPTDREVVDALAPQPGDWLLTKWRYSAFFNSDLLQRLHASGRDQLILCGV 152
>pdb|3TG2|A Chain A, Crystal Structure Of The Isc Domain Of Vibb In Complex
With Isochorismate
Length = 223
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 21/152 (13%)
Query: 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEI----ARQHGILVVWVVR--EH 60
+ LL+ +MQ F+ D +P++IK ++ A+Q GI VV+ +
Sbjct: 27 SRAVLLIHNMQEYFV-----HYFDSQAEPIPSLIKHIQQLKAHAKQAGIPVVYTAQPANQ 81
Query: 61 DPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNS 120
DP R + + G T+ +P L + GD ++ K R+SAF + L
Sbjct: 82 DPAERAL---LSDFWGPGLSEETAIIAP-------LAPESGDVQLTKWRYSAFKKSPLLD 131
Query: 121 FLRTAGIDSLVIVGVQTPNCIRQTVFDAVELD 152
+LR G D L+I GV I T DA D
Sbjct: 132 WLRETGRDQLIITGVYAHIGILSTALDAFMFD 163
>pdb|2FQ1|A Chain A, Crystal Structure Of The Two-Domain Non-Ribosomal Peptide
Synthetase Entb Containing Isochorismate Lyase And
Aryl-Carrier Protein Domains
pdb|2FQ1|B Chain B, Crystal Structure Of The Two-Domain Non-Ribosomal Peptide
Synthetase Entb Containing Isochorismate Lyase And
Aryl-Carrier Protein Domains
Length = 287
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Query: 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRD 66
ALL+ DMQ+ F+ G + ++ N+ + +QH I V + + + D
Sbjct: 31 QRAALLIHDMQDYFVSFWG-ENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDED 89
Query: 67 VELFRQHLYSTGTVGPTSKGSPGAE-LVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTA 125
L GP SP + +VD L D +VK R+SAF + L L+ +
Sbjct: 90 RALL------NDMWGPGLTRSPEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKES 143
Query: 126 GIDSLVIVGVQTPNCIRQTVFDAVELDYK 154
G + L+I GV T DA D K
Sbjct: 144 GRNQLIITGVYAHIGCMTTATDAFMRDIK 172
>pdb|3V8E|A Chain A, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|B Chain B, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|C Chain C, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|D Chain D, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|E Chain E, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|F Chain F, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|G Chain G, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
Length = 216
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 34/180 (18%)
Query: 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQ--HGILVV--WVVREHDPLGR 65
L+V+DMQNDFI G + V G+ ++ + ++ A + H I+V W H +
Sbjct: 3 TLIVVDMQNDFISPLGSLTVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISFAK 62
Query: 66 ---DVELFRQHLYSTGTVGPTS------------KGSPGAELVDGL---------EIKEG 101
D E + + Y + G S K + G++LVD + +I +
Sbjct: 63 NHKDKEPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIVDK 122
Query: 102 DYKVVKMRFSAFF------ATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKS 155
+ + +SAF T +N +L D + IVGV ++ T A EL YK+
Sbjct: 123 GFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYXVKATAISAAELGYKT 182
>pdb|3OQP|A Chain A, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22 A
Resolution
pdb|3OQP|B Chain B, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22 A
Resolution
Length = 211
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVEL 69
AL+VID+QN+++ D + ++ + N+ +A + AR G+ VV +V+ P G L
Sbjct: 8 ALIVIDVQNEYVTGDLPIEYPDVQSSLANIARAXDAARAAGVPVV-IVQNFAPAGS--PL 64
Query: 70 FRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDS 129
F ++GS GAEL + + D+ V K SAF T L +L ID+
Sbjct: 65 F-------------ARGSNGAELHPVVSERARDHYVEKSLPSAFTGTDLAGWLAARQIDT 111
Query: 130 LVIVGVQTPNCIRQTVFDAV 149
L + G T N T+ AV
Sbjct: 112 LTVTGYXTHNXDASTINHAV 131
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 10 ALLVIDMQNDFILDDGLMRVDG-GKAIVPNVIKAVEIARQHGILVVWVV---REHDPLGR 65
AL+ ID DF+ D G + +AI + K +A + G + + + E+D
Sbjct: 24 ALISIDYTEDFVADSGKLTAGAPAQAISDAISKVTRLAFERGDYIFFTIDAHEENDCFHP 83
Query: 66 DVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVV---KMRFSAFFATHLNSFL 122
+ +LF H GT G G G + D +V K +SAF T L+ L
Sbjct: 84 ESKLFPPHNL-IGTSGRNLYGDLGIFYQE----HGSDSRVFWMDKRHYSAFSGTDLDIRL 138
Query: 123 RTAGIDSLVIVGVQTPNCIRQTVFDAVELDY 153
R + ++++ GV T C+ T DA L Y
Sbjct: 139 RERRVSTVILTGVLTDICVLHTAIDAYNLGY 169
>pdb|3OT4|A Chain A, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|B Chain B, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|C Chain C, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|D Chain D, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|E Chain E, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|F Chain F, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|G Chain G, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|H Chain H, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3UAO|A Chain A, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|B Chain B, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|C Chain C, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|D Chain D, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|E Chain E, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|F Chain F, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|G Chain G, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|H Chain H, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
Length = 236
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 87 SPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVF 146
+P + +V L + G+Y V K SAF+ T L ++L G+ +L++ G T +R +V
Sbjct: 119 APASAIVPQLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGXVRASVV 178
Query: 147 DAVELDYK 154
DA+ ++
Sbjct: 179 DAMSAGFR 186
>pdb|1J2R|A Chain A, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|B Chain B, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|C Chain C, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|D Chain D, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
Length = 199
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 1 MADTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREH 60
M + TAL+VID+Q +G++ GG P+ A E+ + G L +
Sbjct: 12 MLELNAKTTALVVIDLQ------EGILPFAGG----PHT--ADEVVNRAGKLAA----KF 55
Query: 61 DPLGRDVELFRQHL---YSTGTVGPTSKGSPGAELVD-------GLEIKEGDYKVVKMRF 110
G+ V L R Y+ P SP L + L + D +++K ++
Sbjct: 56 RASGQPVFLVRVGWSADYAEALKQPVDAPSPAKVLPENWWQHPAALGTTDSDIEIIKRQW 115
Query: 111 SAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYK 154
AF+ T L LR GID++V+ G+ T + T +A EL +
Sbjct: 116 GAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFN 159
>pdb|1NF9|A Chain A, Crystal Structure Of Phzd Protein From Pseudomonas
Aeruginosa
Length = 207
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 81 GPTSKGSPG-AELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGV 135
GP + SP E+V+ L D+ + K R+SAFF + L +R AG D LV+ GV
Sbjct: 95 GPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGV 150
>pdb|1NF8|A Chain A, Crystal Structure Of Phzd Protein Active Site Mutant With
Substrate
Length = 207
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 81 GPTSKGSPG-AELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGV 135
GP + SP E+V+ L D+ + K R+SAFF + L +R AG D LV+ GV
Sbjct: 95 GPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGV 150
>pdb|3MCW|A Chain A, Crystal Structure Of An A Putative Hydrolase Of The
Isochorismatase Family (Cv_1320) From Chromobacterium
Violaceum Atcc 12472 At 1.06 A Resolution
pdb|3MCW|B Chain B, Crystal Structure Of An A Putative Hydrolase Of The
Isochorismatase Family (Cv_1320) From Chromobacterium
Violaceum Atcc 12472 At 1.06 A Resolution
Length = 198
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 79 TVGPTS---KGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGV 135
+V P S G PG +E + G+ + K SAF T L + LR G LV+ GV
Sbjct: 62 SVEPNSTYRPGQPGHAFKPEVEPRPGETVIAKQTNSAFIGTGLEALLRANGWLELVVAGV 121
Query: 136 QTPNCIRQTVFDAVELDY 153
T N + TV A L +
Sbjct: 122 STSNSVEATVRXAGNLGF 139
>pdb|3O94|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 10 ALLVIDMQNDFILDDGLMRVDG-GKAIVPNVIKAVEIARQHGILVVWVV---REHDPLGR 65
AL+ ID DF+ D G + +AI + K +A + G + + + E+D
Sbjct: 24 ALISIDYTEDFVADSGKLTAGAPAQAISDAISKVTRLAFERGDYIFFTIDAHEENDCFHP 83
Query: 66 DVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVV---KMRFSAFFATHLNSFL 122
+ +LF H GT G G G + D +V K +SAF T L+ L
Sbjct: 84 ESKLFPPHNL-IGTSGRNLYGDLGIFYQE----HGSDSRVFWMDKRHYSAFSGTDLDIRL 138
Query: 123 RTAGIDSLVIVGVQTPNCIRQTVFDAVELDY 153
R + ++++ GV T + T DA L Y
Sbjct: 139 RERRVSTVILTGVLTDISVLHTAIDAYNLGY 169
>pdb|3O91|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 10 ALLVIDMQNDFILDDGLMRVDG-GKAIVPNVIKAVEIARQHGILVVWVV---REHDPLGR 65
AL+ ID DF+ D G + +AI + K +A + G + + + E+D
Sbjct: 24 ALISIDYTEDFVADSGKLTAGAPAQAISDAISKVTRLAFERGDYIFFTIDAHEENDCFHP 83
Query: 66 DVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVV---KMRFSAFFATHLNSFL 122
+ +LF H GT G G G + D +V K +SAF T L+ L
Sbjct: 84 ESKLFPPHNL-IGTSGRNLYGDLGIFYQE----HGSDSRVFWMDKRHYSAFSGTDLDIRL 138
Query: 123 RTAGIDSLVIVGVQTPNCIRQTVFDAVELDY 153
R + ++++ GV T + T DA L Y
Sbjct: 139 RERRVSTVILTGVLTDIXVLHTAIDAYNLGY 169
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
pdb|2WT9|B Chain B, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 235
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 22/168 (13%)
Query: 8 NTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREH------D 61
N+AL+V+D+QN F G + V I+P + + + W H
Sbjct: 30 NSALVVVDVQNGFT-PGGNLAVADADTIIPTINQLAGCFENVVLTQDWHPDNHISFAANH 88
Query: 62 PLGRDVELFRQHLYSTGTVGPTS--KGSPGAELVDGLEIKEGDYKVVKM------RFSAF 113
P + E Y + + P +G+ AE L I + K +SAF
Sbjct: 89 PGKQPFETIELD-YGSQVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAF 147
Query: 114 FA------THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKS 155
T L +L+ GID++ +VG+ T C+ T DAV+ +K+
Sbjct: 148 MEADHTTMTGLTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFKT 195
>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 213
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 23/169 (13%)
Query: 8 NTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREH------D 61
N+AL+V+D+QN F G + V I+P + + + W H
Sbjct: 7 NSALVVVDVQNGFT-PGGNLAVADADTIIPTINQLAGCFENVVLTQDWHPDNHISFAANH 65
Query: 62 PLGRDVELFRQHLYSTGTVGPTS--KGSPGAELVDGLEIKEGDYKVVKM------RFSAF 113
P + E Y + + P +G+ AE L I + K +SAF
Sbjct: 66 PGKQPFETIELD-YGSQVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAF 124
Query: 114 FA------THLNSFLRTAGIDSLVIVGVQTPNC-IRQTVFDAVELDYKS 155
T L +L+ GID++ +VG+ T C + T DAV+ +K+
Sbjct: 125 MEADHTTMTGLTGYLKERGIDTVYVVGIATDFCXVAWTALDAVKQGFKT 173
>pdb|3R2J|A Chain A, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|B Chain B, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|C Chain C, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|D Chain D, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
Length = 227
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 22/151 (14%)
Query: 11 LLVIDMQNDFILDDGLMRVDGGKAIVP--NVIKAVEIARQHGILVVWVVREHDPLGRDVE 68
L++ DMQ DF+ G + V GG+A++ N + + R W H
Sbjct: 37 LIIADMQVDFLAPGGSLHVKGGEALLDGINAVSSQLPFRYQVATQDWHPENHCSFVTHGG 96
Query: 69 LFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKM------RFSAF-----FATH 117
+ H +GS GA+L GL + + + K +SAF +T
Sbjct: 97 PWPPHCV---------QGSAGAQLHAGLHTQRINAVIRKGVTQQADSYSAFVEDNGVSTG 147
Query: 118 LNSFLRTAGIDSLVIVGVQTPNCIRQTVFDA 148
L L + G + + GV C+ T DA
Sbjct: 148 LAGLLHSIGARRVFVCGVAYDFCVFFTAMDA 178
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 74 LYSTGTVGPTSKGSPGAELVDGLEIKEGDY-KVVKMRF-SAFFATHLNSFLRTAGIDSLV 131
L + TVGP ++ PGAEL +G + G++ ++ K R A HL S+L A I + V
Sbjct: 323 LDANCTVGPFARLRPGAELAEGAHV--GNFVEIKKARLGKGSKAGHL-SYLGDAEIGAGV 379
Query: 132 IVGVQTPNC 140
+G T C
Sbjct: 380 NIGAGTITC 388
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 74 LYSTGTVGPTSKGSPGAELVDGLEIKEGDY-KVVKMRF-SAFFATHLNSFLRTAGIDSLV 131
L + TVGP ++ PGAEL +G + G++ ++ K R A HL S+L A I + V
Sbjct: 320 LDANCTVGPFARLRPGAELAEGAHV--GNFVEIKKARLGKGSKAGHL-SYLGDAEIGAGV 376
Query: 132 IVGVQTPNC 140
+G T C
Sbjct: 377 NIGAGTITC 385
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 73 HLYSTGTVGPTSKGSPGAELVDGLEIKEGDY-KVVKMRF-SAFFATHLNSFLRTAGIDSL 130
+L + T+GP ++ PGAEL++G + G++ ++ K R A HL ++L A I
Sbjct: 319 NLAAACTIGPFARLRPGAELLEGAHV--GNFVEMKKARLGKGSKAGHL-TYLGDAEIGDN 375
Query: 131 VIVGVQTPNC 140
V +G T C
Sbjct: 376 VNIGAGTITC 385
>pdb|1XN4|A Chain A, Putative Mar1 Ribonuclease From Leishmania Major
Length = 192
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 42/152 (27%)
Query: 8 NTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGIL---VVWVVREHDP-- 62
TA L +D+Q F R++ V A +AR H ++ ++V EH P
Sbjct: 12 KTAFLCVDLQEAFS-----KRIEN---FANCVFVANRLARLHELVPENTKYIVTEHYPKG 63
Query: 63 LGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFL 122
LGR +V G+ + + + + K RFS + L
Sbjct: 64 LGR--------------------------IVPGITLPQTAHLIEKTRFSCI-VPQVEELL 96
Query: 123 RTAGIDSLVIVGVQTPNCIRQTVFDAVELDYK 154
+D+ V+ G++ CI QTV D ++++ +
Sbjct: 97 E--DVDNAVVFGIEGHACILQTVADLLDMNKR 126
>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor
pdb|4AA7|B Chain B, E.Coli Glmu In Complex With An Antibacterial Inhibitor
Length = 231
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 73 HLYSTGTVGPTSKGSPGAELVDGLEIKEGDY-KVVKMRF-SAFFATHLNSFLRTAGIDSL 130
+L + T+GP ++ PGAEL++G + G++ ++ K R A HL ++L A I
Sbjct: 94 NLAAACTIGPFARLRPGAELLEGAHV--GNFVEMKKARLGKGSKAGHL-TYLGDAEIGDN 150
Query: 131 VIVGVQTPNC 140
V +G T C
Sbjct: 151 VNIGAGTITC 160
>pdb|3TWD|A Chain A, Glmuc1 In Complex With An Antibacterial Inhibitor
pdb|3TWD|B Chain B, Glmuc1 In Complex With An Antibacterial Inhibitor
Length = 222
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 73 HLYSTGTVGPTSKGSPGAELVDGLEIKEGDY-KVVKMRFS-AFFATHLNSFLRTAGIDSL 130
+L + T+GP ++ PGAEL++G + G++ ++ K R A HL ++L A I
Sbjct: 88 NLAAACTIGPFARLRPGAELLEGAHV--GNFVEMKKARLGKGSKAGHL-TYLGDAEIGDN 144
Query: 131 VIVGVQTPNC 140
V +G T C
Sbjct: 145 VNIGAGTITC 154
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 72 QHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNS---FLRTAGID 128
H + ++GP G P E+ + ++ G + K +FS H S +L +
Sbjct: 73 NHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNN 132
Query: 129 SLVIV 133
LVI+
Sbjct: 133 KLVIL 137
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 72 QHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNS---FLRTAGID 128
H + ++GP G P E+ + ++ G + K +FS H S +L +
Sbjct: 72 NHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNN 131
Query: 129 SLVIV 133
LVI+
Sbjct: 132 KLVIL 136
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 3 DTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQ-----HGILVVWVV 57
D F N L++ID Q+ F + ++ GK + V+ A I R +G L V V+
Sbjct: 485 DVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVI 544
Query: 58 REHDPLGRDVE 68
E P ++V+
Sbjct: 545 DEMPPGRKEVQ 555
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 53 VVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSA 112
+++R+H+ DV F H T PT PG++ + E G+ ++
Sbjct: 120 AAYLLRKHEVSRLDVVNFISH--GTRKDEPTQSSDPGSQ-PNSEEQAGGEERLEN----- 171
Query: 113 FFATHLNSFLRTAGIDSLV 131
F T+LN R GID L+
Sbjct: 172 -FTTNLNQLARVGGIDPLI 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,905,719
Number of Sequences: 62578
Number of extensions: 186891
Number of successful extensions: 520
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 46
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)