Query 030598
Match_columns 174
No_of_seqs 127 out of 1096
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 16:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01015 CSHase N-carbamoylsarc 100.0 2.5E-41 5.4E-46 250.1 15.9 159 10-173 1-159 (179)
2 PRK11440 putative hydrolase; P 100.0 6.4E-41 1.4E-45 249.6 16.0 166 1-173 1-166 (188)
3 TIGR03614 RutB pyrimidine util 100.0 1.8E-40 3.8E-45 253.7 16.4 169 4-173 11-197 (226)
4 cd01013 isochorismatase Isocho 100.0 1.3E-39 2.9E-44 245.1 16.4 162 5-173 26-187 (203)
5 PRK11609 nicotinamidase/pyrazi 100.0 1.2E-39 2.7E-44 246.9 16.0 164 7-172 1-188 (212)
6 cd01011 nicotinamidase Nicotin 100.0 9.7E-40 2.1E-44 244.7 14.8 161 9-173 2-183 (196)
7 PF00857 Isochorismatase: Isoc 100.0 4.4E-40 9.4E-45 241.9 11.2 157 9-173 1-157 (174)
8 cd00431 cysteine_hydrolases Cy 100.0 1.7E-38 3.6E-43 230.8 15.5 155 10-173 1-155 (161)
9 PLN02621 nicotinamidase 100.0 2.9E-38 6.2E-43 236.9 15.1 156 4-173 16-172 (197)
10 COG1335 PncA Amidases related 100.0 4.8E-38 1E-42 236.9 15.8 165 5-170 2-175 (205)
11 cd01014 nicotinamidase_related 100.0 5.4E-38 1.2E-42 227.2 15.1 143 10-172 1-143 (155)
12 PLN02743 nicotinamidase 100.0 4.2E-38 9E-43 241.2 14.4 158 5-173 24-204 (239)
13 PTZ00331 alpha/beta hydrolase; 100.0 9.8E-38 2.1E-42 236.3 16.1 166 4-173 8-191 (212)
14 cd01012 YcaC_related YcaC rela 100.0 2.6E-36 5.6E-41 218.9 10.1 132 10-173 1-133 (157)
15 COG1535 EntB Isochorismate hyd 100.0 3.3E-33 7.1E-38 199.8 10.8 163 3-173 25-188 (218)
16 KOG4003 Pyrazinamidase/nicotin 100.0 5.4E-28 1.2E-32 172.8 9.1 164 8-172 1-196 (223)
17 KOG4044 Mitochondrial associat 99.9 1.1E-21 2.4E-26 138.9 9.3 133 3-168 10-143 (201)
18 PF02739 5_3_exonuc_N: 5'-3' e 84.8 1.6 3.5E-05 31.8 4.0 43 117-160 90-132 (169)
19 PF06833 MdcE: Malonate decarb 71.2 4.2 9.2E-05 31.3 2.7 55 4-60 61-115 (234)
20 PF10281 Ish1: Putative stress 71.0 2.3 5.1E-05 22.8 1.0 19 110-128 1-19 (38)
21 cd00008 53EXOc 5'-3' exonuclea 64.5 14 0.00031 28.4 4.6 44 116-160 88-131 (240)
22 smart00475 53EXOc 5'-3' exonuc 64.1 16 0.00035 28.6 4.8 44 116-160 87-130 (259)
23 PRK09482 flap endonuclease-lik 61.6 15 0.00033 28.7 4.2 44 116-160 87-130 (256)
24 PTZ00170 D-ribulose-5-phosphat 60.9 68 0.0015 24.5 7.7 103 36-161 18-122 (228)
25 PHA00350 putative assembly pro 60.9 15 0.00033 30.7 4.3 50 8-58 81-143 (399)
26 PHA02567 rnh RnaseH; Provision 60.9 22 0.00048 28.6 5.1 42 118-160 112-153 (304)
27 TIGR03586 PseI pseudaminic aci 58.5 56 0.0012 26.6 7.1 98 37-167 77-174 (327)
28 COG2179 Predicted hydrolase of 58.5 64 0.0014 23.7 6.6 111 12-165 31-143 (175)
29 PRK14976 5'-3' exonuclease; Pr 57.3 23 0.00049 28.1 4.6 44 116-160 93-136 (281)
30 PHA00439 exonuclease 56.7 28 0.00061 27.8 5.0 43 117-160 101-144 (286)
31 PF13727 CoA_binding_3: CoA-bi 54.6 20 0.00043 25.3 3.6 43 116-159 131-174 (175)
32 PRK14045 1-aminocyclopropane-1 54.1 34 0.00074 27.6 5.2 41 121-162 64-104 (329)
33 PRK10098 putative dehydrogenas 53.8 22 0.00047 29.2 4.1 46 7-62 76-121 (350)
34 PRK12390 1-aminocyclopropane-1 51.5 50 0.0011 26.7 5.8 42 120-162 60-101 (337)
35 COG2515 Acd 1-aminocyclopropan 51.5 45 0.00098 26.9 5.3 45 117-161 51-98 (323)
36 COG0678 AHP1 Peroxiredoxin [Po 50.9 35 0.00076 24.6 4.2 51 117-169 63-113 (165)
37 COG2089 SpsE Sialic acid synth 49.4 1.1E+02 0.0023 25.1 7.1 57 115-172 136-192 (347)
38 PF00009 GTP_EFTU: Elongation 48.1 50 0.0011 23.9 5.0 37 6-57 93-129 (188)
39 cd01427 HAD_like Haloacid deha 46.2 40 0.00086 22.0 3.9 48 11-58 1-48 (139)
40 PRK13260 2,3-diketo-L-gulonate 44.2 37 0.00079 27.7 3.9 45 7-61 72-116 (332)
41 TIGR00593 pola DNA polymerase 43.7 44 0.00096 31.0 4.8 44 116-160 87-130 (887)
42 PF08659 KR: KR domain; Inter 43.5 77 0.0017 22.9 5.3 44 116-160 14-59 (181)
43 PF03102 NeuB: NeuB family; I 42.2 31 0.00068 26.7 3.2 102 36-170 55-156 (241)
44 TIGR03569 NeuB_NnaB N-acetylne 41.1 1.3E+02 0.0028 24.5 6.7 86 36-153 75-160 (329)
45 PF01408 GFO_IDH_MocA: Oxidore 40.9 95 0.0021 20.3 5.1 45 116-163 52-96 (120)
46 PF12242 Eno-Rase_NADH_b: NAD( 40.9 78 0.0017 20.0 4.2 30 125-154 37-66 (78)
47 TIGR03175 AllD ureidoglycolate 40.8 43 0.00093 27.5 3.9 45 7-61 72-116 (349)
48 TIGR01274 ACC_deam 1-aminocycl 40.8 85 0.0018 25.4 5.6 42 120-162 59-100 (337)
49 PRK05973 replicative DNA helic 39.9 59 0.0013 25.1 4.3 45 9-59 148-192 (237)
50 cd00382 beta_CA Carbonic anhyd 39.2 64 0.0014 21.9 4.0 38 99-136 24-67 (119)
51 COG0533 QRI7 Metal-dependent p 38.7 68 0.0015 26.3 4.6 42 118-160 253-296 (342)
52 PRK06372 translation initiatio 38.2 88 0.0019 24.5 5.1 60 100-165 86-146 (253)
53 PLN02869 fatty aldehyde decarb 37.0 2.7E+02 0.0059 24.9 8.2 31 125-157 446-476 (620)
54 TIGR00288 conserved hypothetic 36.7 1.2E+02 0.0025 22.0 5.2 36 122-160 101-136 (160)
55 PF00490 ALAD: Delta-aminolevu 36.4 63 0.0014 26.2 4.0 51 120-171 64-129 (324)
56 PLN00105 malate/L-lactate dehy 36.3 61 0.0013 26.4 4.1 45 7-61 61-106 (330)
57 PRK15025 ureidoglycolate dehyd 35.2 61 0.0013 26.6 3.9 46 7-62 72-117 (349)
58 KOG0029 Amine oxidase [Seconda 35.1 60 0.0013 28.1 4.1 37 126-165 14-52 (501)
59 PF03796 DnaB_C: DnaB-like hel 34.7 1.2E+02 0.0027 23.1 5.5 51 7-59 129-179 (259)
60 PF07283 TrbH: Conjugal transf 34.5 21 0.00046 24.6 1.0 36 92-128 16-51 (121)
61 cd01394 radB RadB. The archaea 34.4 65 0.0014 23.9 3.8 51 9-59 104-157 (218)
62 PRK12815 carB carbamoyl phosph 34.4 76 0.0016 30.2 4.9 37 126-163 554-599 (1068)
63 cd06449 ACCD Aminocyclopropane 34.3 1.3E+02 0.0029 23.8 5.8 43 122-165 47-89 (307)
64 cd01120 RecA-like_NTPases RecA 33.7 49 0.0011 22.6 2.9 55 7-61 84-138 (165)
65 COG0303 MoeA Molybdopterin bio 32.9 2.3E+02 0.005 23.8 7.0 48 117-167 207-256 (404)
66 COG2055 Malate/L-lactate dehyd 32.1 1E+02 0.0022 25.4 4.7 46 7-62 75-120 (349)
67 TIGR01378 thi_PPkinase thiamin 31.9 1.7E+02 0.0038 21.8 5.7 47 115-162 72-126 (203)
68 cd00984 DnaB_C DnaB helicase C 31.4 90 0.002 23.4 4.2 49 8-58 123-171 (242)
69 cd02922 FCB2_FMN Flavocytochro 31.4 2.6E+02 0.0056 22.9 7.0 23 37-59 131-153 (344)
70 cd05014 SIS_Kpsf KpsF-like pro 31.3 98 0.0021 20.6 4.0 27 33-59 57-83 (128)
71 TIGR00329 gcp_kae1 metallohydr 31.3 81 0.0018 25.1 4.0 40 121-161 253-294 (305)
72 PF13684 Dak1_2: Dihydroxyacet 31.0 1.5E+02 0.0032 23.9 5.5 48 115-162 105-152 (313)
73 cd00883 beta_CA_cladeA Carboni 30.8 1.6E+02 0.0035 21.6 5.3 48 98-145 45-98 (182)
74 COG1674 FtsK DNA segregation A 30.7 59 0.0013 30.1 3.5 48 7-61 638-685 (858)
75 cd00138 PLDc Phospholipase D. 30.1 1.3E+02 0.0029 21.1 4.7 47 118-166 26-79 (176)
76 cd00544 CobU Adenosylcobinamid 29.9 73 0.0016 23.1 3.3 50 9-60 74-126 (169)
77 PF05872 DUF853: Bacterial pro 29.9 1.8E+02 0.0039 25.1 5.9 54 4-66 250-304 (502)
78 cd01078 NAD_bind_H4MPT_DH NADP 29.8 1.6E+02 0.0036 21.3 5.3 30 128-159 29-58 (194)
79 PF13344 Hydrolase_6: Haloacid 29.8 79 0.0017 20.6 3.2 25 33-57 13-37 (101)
80 cd01393 recA_like RecA is a b 29.7 67 0.0015 23.9 3.2 53 7-59 113-168 (226)
81 TIGR01275 ACC_deam_rel pyridox 29.6 1.5E+02 0.0032 23.5 5.3 41 122-163 51-91 (311)
82 TIGR02964 xanthine_xdhC xanthi 29.5 96 0.0021 24.0 4.1 34 126-162 99-132 (246)
83 COG1066 Sms Predicted ATP-depe 29.4 1.2E+02 0.0026 25.8 4.7 51 6-58 166-218 (456)
84 PF13481 AAA_25: AAA domain; P 29.4 99 0.0021 22.2 4.0 47 8-58 141-187 (193)
85 PTZ00445 p36-lilke protein; Pr 28.9 1.4E+02 0.0031 22.8 4.7 50 10-59 44-100 (219)
86 PRK13397 3-deoxy-7-phosphohept 28.8 2.9E+02 0.0062 21.6 6.9 13 121-133 144-156 (250)
87 PF11020 DUF2610: Domain of un 28.8 26 0.00057 22.2 0.6 36 15-52 32-67 (82)
88 COG0794 GutQ Predicted sugar p 28.7 1.4E+02 0.003 22.6 4.6 32 128-160 40-72 (202)
89 KOG1014 17 beta-hydroxysteroid 28.4 1.2E+02 0.0026 24.6 4.4 37 121-160 44-80 (312)
90 COG0288 CynT Carbonic anhydras 28.1 1.2E+02 0.0027 22.8 4.3 49 98-146 56-110 (207)
91 cd00884 beta_CA_cladeB Carboni 28.0 2.4E+02 0.0052 20.9 5.8 30 116-145 75-104 (190)
92 cd01121 Sms Sms (bacterial rad 28.0 1E+02 0.0022 25.5 4.2 50 8-58 158-208 (372)
93 PF03767 Acid_phosphat_B: HAD 27.9 72 0.0016 24.4 3.1 38 116-154 121-158 (229)
94 PRK05755 DNA polymerase I; Pro 27.8 1.3E+02 0.0029 27.9 5.3 44 116-160 89-132 (880)
95 cd06167 LabA_like LabA_like pr 27.6 1.9E+02 0.004 19.9 5.0 44 116-162 89-132 (149)
96 PF04263 TPK_catalytic: Thiami 27.4 2.1E+02 0.0045 19.6 5.5 45 115-160 70-122 (123)
97 PRK03094 hypothetical protein; 27.3 53 0.0012 20.9 1.9 14 116-129 11-24 (80)
98 COG4753 Response regulator con 27.2 79 0.0017 27.2 3.4 91 35-160 13-105 (475)
99 COG0258 Exo 5'-3' exonuclease 27.0 84 0.0018 25.1 3.5 45 116-161 99-143 (310)
100 PF00861 Ribosomal_L18p: Ribos 26.9 1.8E+02 0.0038 19.8 4.6 39 116-154 78-118 (119)
101 PRK03910 D-cysteine desulfhydr 26.8 2E+02 0.0043 23.1 5.6 43 122-165 59-101 (331)
102 PF06230 DUF1009: Protein of u 26.7 68 0.0015 24.4 2.7 20 117-136 3-22 (214)
103 cd05015 SIS_PGI_1 Phosphogluco 26.6 2.1E+02 0.0045 20.2 5.2 42 117-159 9-55 (158)
104 COG0561 Cof Predicted hydrolas 26.4 1.6E+02 0.0036 22.4 5.0 41 9-57 3-43 (264)
105 cd04795 SIS SIS domain. SIS (S 26.4 1.2E+02 0.0025 18.4 3.5 23 35-57 59-81 (87)
106 PRK13835 conjugal transfer pro 26.4 27 0.00059 24.9 0.5 37 92-130 50-86 (145)
107 TIGR01680 Veg_Stor_Prot vegeta 26.2 1.3E+02 0.0028 23.9 4.2 37 117-154 152-188 (275)
108 COG3356 Predicted membrane pro 26.2 1.2E+02 0.0027 26.6 4.4 25 117-142 463-487 (578)
109 cd07041 STAS_RsbR_RsbS_like Su 26.0 1.5E+02 0.0034 19.1 4.2 38 10-57 42-80 (109)
110 PRK14031 glutamate dehydrogena 25.8 2.2E+02 0.0048 24.3 5.8 45 118-165 215-263 (444)
111 PF13580 SIS_2: SIS domain; PD 25.7 1.1E+02 0.0024 21.0 3.6 25 33-57 113-137 (138)
112 TIGR03722 arch_KAE1 universal 25.5 1.2E+02 0.0026 24.4 4.1 39 122-161 238-278 (322)
113 PF13450 NAD_binding_8: NAD(P) 25.3 81 0.0017 18.9 2.4 21 141-162 8-28 (68)
114 PRK06935 2-deoxy-D-gluconate 3 25.3 1.3E+02 0.0027 22.7 4.1 13 115-127 28-40 (258)
115 PRK10513 sugar phosphate phosp 25.2 1.8E+02 0.0038 22.2 4.9 41 9-57 3-43 (270)
116 cd05008 SIS_GlmS_GlmD_1 SIS (S 25.2 1.3E+02 0.0029 19.8 3.8 25 34-58 57-81 (126)
117 COG1647 Esterase/lipase [Gener 25.1 69 0.0015 24.8 2.5 31 120-152 77-107 (243)
118 TIGR01369 CPSaseII_lrg carbamo 24.9 1.2E+02 0.0027 28.7 4.6 36 126-162 553-597 (1050)
119 PRK10976 putative hydrolase; P 24.9 1.8E+02 0.004 22.1 5.0 39 11-57 4-42 (266)
120 KOG3076 5'-phosphoribosylglyci 24.8 1.4E+02 0.0031 22.4 4.0 22 115-136 76-97 (206)
121 PF12404 DUF3663: Peptidase ; 24.7 77 0.0017 20.0 2.2 17 119-135 44-60 (77)
122 TIGR02708 L_lactate_ox L-lacta 24.6 3.1E+02 0.0067 22.8 6.3 24 37-60 146-169 (367)
123 PHA00012 I assembly protein 24.6 1.8E+02 0.0039 24.0 4.8 48 7-59 80-127 (361)
124 PF07745 Glyco_hydro_53: Glyco 24.4 1.8E+02 0.0038 23.8 4.8 44 115-159 26-77 (332)
125 PLN02493 probable peroxisomal 24.4 3.8E+02 0.0083 22.2 6.8 25 36-60 134-158 (367)
126 PRK11823 DNA repair protein Ra 24.3 1.5E+02 0.0032 25.2 4.6 50 8-58 156-206 (446)
127 TIGR00416 sms DNA repair prote 24.3 1.5E+02 0.0034 25.2 4.7 50 8-58 170-220 (454)
128 PF13090 PP_kinase_C: Polyphos 24.1 2.5E+02 0.0054 23.2 5.6 66 101-170 9-80 (352)
129 cd05710 SIS_1 A subgroup of th 24.0 1.5E+02 0.0032 19.8 3.8 26 33-58 57-82 (120)
130 PTZ00174 phosphomannomutase; P 23.9 2.6E+02 0.0057 21.2 5.6 42 8-57 4-45 (247)
131 PRK13600 putative ribosomal pr 23.9 1.1E+02 0.0023 19.7 2.8 21 37-57 42-62 (84)
132 TIGR01552 phd_fam prevent-host 23.9 1.4E+02 0.0029 16.6 3.1 26 33-59 5-30 (52)
133 TIGR01250 pro_imino_pep_2 prol 23.7 1.5E+02 0.0033 21.9 4.3 47 116-163 84-130 (288)
134 PLN00416 carbonate dehydratase 23.7 2.8E+02 0.0061 21.8 5.7 48 98-145 100-157 (258)
135 COG1832 Predicted CoA-binding 23.7 1.6E+02 0.0035 20.9 3.9 43 116-161 7-51 (140)
136 TIGR02461 osmo_MPG_phos mannos 23.7 1.6E+02 0.0035 22.2 4.4 38 11-57 1-38 (225)
137 PRK10530 pyridoxal phosphate ( 23.7 1.8E+02 0.004 22.0 4.8 40 10-57 4-43 (272)
138 smart00513 SAP Putative DNA-bi 23.6 39 0.00084 17.4 0.7 18 111-128 2-19 (35)
139 PLN02723 3-mercaptopyruvate su 23.5 2.5E+02 0.0054 22.5 5.6 46 116-161 89-137 (320)
140 PRK12702 mannosyl-3-phosphogly 23.5 2.1E+02 0.0046 23.1 5.0 40 11-58 3-42 (302)
141 PRK07831 short chain dehydroge 23.5 1.5E+02 0.0032 22.4 4.1 19 115-134 31-49 (262)
142 PF04122 CW_binding_2: Putativ 23.5 70 0.0015 20.3 2.0 23 115-137 61-83 (92)
143 PRK05443 polyphosphate kinase; 23.4 3.8E+02 0.0083 24.3 7.1 66 100-169 338-409 (691)
144 PRK01710 murD UDP-N-acetylmura 23.3 1.5E+02 0.0032 25.1 4.4 30 128-160 15-44 (458)
145 COG0647 NagD Predicted sugar p 23.2 1.4E+02 0.0031 23.5 4.0 42 7-57 6-47 (269)
146 TIGR03723 bact_gcp putative gl 23.2 1.3E+02 0.0029 24.1 4.0 40 121-161 254-295 (314)
147 PRK00912 ribonuclease P protei 23.2 1.1E+02 0.0025 23.2 3.5 30 35-64 152-181 (237)
148 PLN02979 glycolate oxidase 23.1 3.4E+02 0.0075 22.5 6.3 24 36-59 133-156 (366)
149 PLN02253 xanthoxin dehydrogena 23.0 1.5E+02 0.0032 22.7 4.1 21 113-134 29-49 (280)
150 PF10092 DUF2330: Uncharacteri 23.0 4.3E+02 0.0094 21.8 7.4 139 5-160 20-174 (348)
151 TIGR01675 plant-AP plant acid 23.0 1.6E+02 0.0035 22.6 4.2 40 118-158 153-200 (229)
152 TIGR03025 EPS_sugtrans exopoly 22.9 2.3E+02 0.005 23.7 5.5 48 116-164 178-226 (445)
153 COG0269 SgbH 3-hexulose-6-phos 22.8 3.3E+02 0.0072 20.8 5.7 53 115-170 69-121 (217)
154 TIGR01681 HAD-SF-IIIC HAD-supe 22.7 2.5E+02 0.0055 18.9 5.3 48 11-58 2-53 (128)
155 PRK09604 UGMP family protein; 22.7 1.3E+02 0.0028 24.3 3.8 40 121-161 249-290 (332)
156 TIGR02463 MPGP_rel mannosyl-3- 22.7 1.9E+02 0.0041 21.3 4.5 39 11-57 1-39 (221)
157 PF03490 Varsurf_PPLC: Variant 22.6 59 0.0013 18.7 1.3 21 116-136 13-33 (51)
158 TIGR01012 Sa_S2_E_A ribosomal 22.6 1.3E+02 0.0029 22.5 3.5 20 42-61 123-142 (196)
159 COG1184 GCD2 Translation initi 22.5 3.2E+02 0.0068 22.1 5.8 59 100-164 119-181 (301)
160 cd04448 DEP_PIKfyve DEP (Dishe 22.5 42 0.00092 21.2 0.8 47 107-161 23-69 (81)
161 PF11443 DUF2828: Domain of un 22.5 2.8E+02 0.0062 24.3 5.9 42 4-51 434-475 (534)
162 smart00775 LNS2 LNS2 domain. T 22.5 2.4E+02 0.0051 20.0 4.8 25 33-57 26-50 (157)
163 cd00763 Bacterial_PFK Phosphof 22.4 2.3E+02 0.005 22.9 5.2 38 118-159 84-121 (317)
164 TIGR00213 GmhB_yaeD D,D-heptos 22.3 1.2E+02 0.0027 21.6 3.3 24 34-57 26-49 (176)
165 PRK10736 hypothetical protein; 22.2 4.7E+02 0.01 21.8 7.8 52 116-172 127-180 (374)
166 PRK09165 replicative DNA helic 22.1 1.6E+02 0.0034 25.4 4.4 51 9-60 342-393 (497)
167 PRK11126 2-succinyl-6-hydroxy- 22.0 2.1E+02 0.0046 20.9 4.7 51 115-166 53-104 (242)
168 PRK15126 thiamin pyrimidine py 22.0 2.2E+02 0.0048 21.8 4.9 39 11-57 4-42 (272)
169 COG4148 ModC ABC-type molybdat 21.9 1.4E+02 0.003 24.2 3.7 44 8-60 146-189 (352)
170 PF12696 TraG-D_C: TraM recogn 21.9 2.2E+02 0.0047 19.2 4.4 24 36-59 15-38 (128)
171 TIGR01452 PGP_euk phosphoglyco 21.7 1.3E+02 0.0029 23.3 3.7 38 11-57 4-41 (279)
172 TIGR02171 Fb_sc_TIGR02171 Fibr 21.7 1.4E+02 0.0029 28.0 4.0 38 35-72 806-843 (912)
173 PLN02538 2,3-bisphosphoglycera 21.7 1.9E+02 0.0041 25.5 4.7 53 111-163 110-171 (558)
174 smart00450 RHOD Rhodanese Homo 21.6 2E+02 0.0043 17.4 5.6 36 128-164 57-92 (100)
175 PF02615 Ldh_2: Malate/L-lacta 21.5 62 0.0013 26.4 1.7 45 8-62 73-117 (335)
176 PF01380 SIS: SIS domain SIS d 21.4 2E+02 0.0043 18.9 4.1 25 35-59 65-89 (131)
177 TIGR02589 cas_Csd2 CRISPR-asso 21.2 60 0.0013 25.9 1.5 29 133-162 33-63 (284)
178 PRK13656 trans-2-enoyl-CoA red 21.1 1.8E+02 0.004 24.4 4.4 32 126-159 40-72 (398)
179 COG1104 NifS Cysteine sulfinat 21.1 2.1E+02 0.0046 23.9 4.7 34 125-160 89-122 (386)
180 TIGR02237 recomb_radB DNA repa 21.1 1.7E+02 0.0036 21.4 3.9 51 8-58 97-148 (209)
181 TIGR01595 cas_CT1132 CRISPR-as 21.0 90 0.0019 24.6 2.5 28 133-161 36-64 (265)
182 PRK00192 mannosyl-3-phosphogly 20.9 2.5E+02 0.0053 21.7 5.0 41 9-57 4-44 (273)
183 PRK10263 DNA translocase FtsK; 20.9 1.1E+02 0.0023 30.0 3.2 44 9-59 1141-1184(1355)
184 PF04208 MtrA: Tetrahydrometha 20.8 1.4E+02 0.0031 22.0 3.2 38 117-154 54-96 (176)
185 COG2222 AgaS Predicted phospho 20.7 2.1E+02 0.0046 23.4 4.7 37 116-152 28-64 (340)
186 PRK14878 UGMP family protein; 20.7 1.6E+02 0.0036 23.6 4.0 39 122-161 237-277 (323)
187 PF07643 DUF1598: Protein of u 20.6 2.4E+02 0.0052 18.1 3.9 29 120-148 34-63 (84)
188 PHA03003 palmytilated EEV memb 20.6 2.1E+02 0.0045 23.6 4.6 74 85-165 8-88 (369)
189 PRK11493 sseA 3-mercaptopyruva 20.6 3E+02 0.0065 21.5 5.4 45 116-160 73-120 (281)
190 PRK08535 translation initiatio 20.5 2E+02 0.0042 23.2 4.4 60 100-165 120-183 (310)
191 PLN03006 carbonate dehydratase 20.5 3.8E+02 0.0081 21.7 5.9 47 98-144 133-188 (301)
192 COG1148 HdrA Heterodisulfide r 20.5 1.6E+02 0.0034 25.9 3.9 42 116-161 114-155 (622)
193 PLN03019 carbonic anhydrase 20.2 3.7E+02 0.0079 22.0 5.8 48 98-145 175-232 (330)
194 PF06415 iPGM_N: BPG-independe 20.2 1E+02 0.0022 23.7 2.5 53 113-165 11-74 (223)
195 PRK13883 conjugal transfer pro 20.2 40 0.00088 24.2 0.4 39 92-131 44-82 (151)
196 PRK10349 carboxylesterase BioH 20.1 1.8E+02 0.0039 21.7 4.0 47 116-163 186-234 (256)
197 TIGR00312 cbiD cobalamin biosy 20.1 1.3E+02 0.0028 24.8 3.3 74 32-137 169-243 (347)
198 PLN02154 carbonic anhydrase 20.1 4E+02 0.0086 21.4 5.9 48 98-145 127-183 (290)
199 COG1412 Uncharacterized protei 20.1 1.2E+02 0.0027 21.3 2.8 23 35-57 102-124 (136)
200 PF01927 Mut7-C: Mut7-C RNAse 20.0 1.6E+02 0.0035 20.7 3.5 29 116-145 10-38 (147)
No 1
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=100.00 E-value=2.5e-41 Score=250.07 Aligned_cols=159 Identities=30% Similarity=0.471 Sum_probs=139.3
Q ss_pred EEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCC
Q 030598 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPG 89 (174)
Q Consensus 10 aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 89 (174)
|||+|||||+|+.+++ +..+....++++++++++.+|++|+||||+++.+.+...+...|..... ....+..|++|
T Consensus 1 ALlvID~Q~~f~~~~~-~~~~~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~~~~~~~~~~---~~~~~~~gs~~ 76 (179)
T cd01015 1 ALLVIDLVEGYTQPGS-YLAPGIAAALENVQRLLAAARAAGVPVIHTTVVYDPDGADGGLWARKVP---AMSDLVEGSPL 76 (179)
T ss_pred CEEEEEeecceeCCCC-ccccchHHHHHHHHHHHHHHHHcCCCEEEEEeeECCccCccchhhhccc---ccccccCCCCc
Confidence 7999999999998644 5667778999999999999999999999999877665444444432211 11346789999
Q ss_pred CccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCChh
Q 030598 90 AELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPE 169 (174)
Q Consensus 90 ~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~ 169 (174)
+++.++|.+.++++++.|++||+|.+|+|+.+|+++||++|+|+|++||+||++||++|+++||+ |+|++|||++.+++
T Consensus 77 ~~~~~~l~~~~~~~v~~K~~~saF~~t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~-v~vv~Da~a~~~~~ 155 (179)
T cd01015 77 AAICDELAPQEDEMVLVKKYASAFFGTSLAATLTARGVDTLIVAGCSTSGCIRATAVDAMQHGFR-PIVVRECVGDRAPA 155 (179)
T ss_pred cccccccCCCCCCEEEecCccCCccCCcHHHHHHHcCCCEEEEeeecccHhHHHHHHHHHHCCCe-EEEeeccccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhc
Q 030598 170 IHAG 173 (174)
Q Consensus 170 ~h~~ 173 (174)
.|++
T Consensus 156 ~h~~ 159 (179)
T cd01015 156 PHEA 159 (179)
T ss_pred HHHH
Confidence 9975
No 2
>PRK11440 putative hydrolase; Provisional
Probab=100.00 E-value=6.4e-41 Score=249.64 Aligned_cols=166 Identities=26% Similarity=0.309 Sum_probs=139.0
Q ss_pred CCCCCCCCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCC
Q 030598 1 MADTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTV 80 (174)
Q Consensus 1 ~~~~~~~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (174)
|...+++++|||+|||||+|+.+.+ .....+++++++++|++.||++|+||||+++.+.+...+.. +.... ....
T Consensus 1 ~~~l~~~~~ALlvID~Qn~f~~~~~--~~~~~~~~i~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~--~~~~~-~~~~ 75 (188)
T PRK11440 1 MLELNAKTTALVVIDLQEGILPFAG--GPHTADEVVARAARLAAKFRASGSPVVLVRVGWSADYAEAL--KQPVD-APSP 75 (188)
T ss_pred CCCCCCCCEEEEEEecccccccCCC--CcchHHHHHHHHHHHHHHHHHcCCcEEEEecccCCchhhhc--cCccc-cccc
Confidence 6677899999999999999997432 22346789999999999999999999999887766543211 01000 0111
Q ss_pred CCCCCCCCCCccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 81 GPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 81 ~~~~~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
.++..+++ +++.++|.|.++|.++.|+++|+|++|+|+.+|+++||++|+|+|+.||+||++||++|+++||+ |+|++
T Consensus 76 ~~~~~~~~-~~~~~~l~~~~~d~vi~K~~~saF~~T~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~-v~vv~ 153 (188)
T PRK11440 76 AKVLPENW-WQHPAALGKTDSDIEVTKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFN-LVIAE 153 (188)
T ss_pred ccccCCcc-cccCcccCCCCCCEEEecCCcCCCCCCCHHHHHHHCCCCEEEEeeechhHHHHHHHHHHHHCCCE-EEEec
Confidence 33556665 79999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccccCCChhhhhc
Q 030598 161 DATAAATPEIHAG 173 (174)
Q Consensus 161 Da~~~~~~~~h~~ 173 (174)
|||++.+++.|++
T Consensus 154 Da~as~~~~~h~~ 166 (188)
T PRK11440 154 DACSAASAEQHQN 166 (188)
T ss_pred hhhcCCCHHHHHH
Confidence 9999999999974
No 3
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=100.00 E-value=1.8e-40 Score=253.71 Aligned_cols=169 Identities=34% Similarity=0.473 Sum_probs=140.3
Q ss_pred CCCCCeEEEEEcccccccCCCCccc-----cCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCC-----hhhhhhh
Q 030598 4 TKFNNTALLVIDMQNDFILDDGLMR-----VDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRD-----VELFRQH 73 (174)
Q Consensus 4 ~~~~~~aLlviD~Q~~f~~~~g~~~-----~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~-----~~~~~~~ 73 (174)
.+++++|||||||||+|+.+++.+. .++...+++++++|++.+|+.|+||||+++.+.+++.+ ...|...
T Consensus 11 ~~~~~tALlvID~Qn~f~~~~~~~~~~~~~~~~~~~~i~~i~~l~~~aR~~g~pVI~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T TIGR03614 11 LDPEQTALIVVDMQNAYATPGGYLDLAGFDVSGTKPVIENIKKAVTAARAAGIQVIYFQNGWDNDYVEAGGPGSPNWHKS 90 (226)
T ss_pred cCCCCEEEEEEechhhhhCCCcccccccCcchhHHHHHHHHHHHHHHHHHcCCEEEEEecccChhhhhccCCCccccccc
Confidence 4789999999999999999776553 34567899999999999999999999998877654321 1111110
Q ss_pred h-----c-CCC-CCCCCCCCCCCCccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHH
Q 030598 74 L-----Y-STG-TVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVF 146 (174)
Q Consensus 74 ~-----~-~~~-~~~~~~~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~ 146 (174)
. . ..+ ....+..|++|+++.++|.|.++|+++.|++||+|++|+|+.+|+++||++|+|+|++||+||++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~p~~~d~vi~K~~~saF~~T~L~~~Lr~~gI~~lvi~Gv~T~~CV~sTar 170 (226)
T TIGR03614 91 NALKTMRKRPELQGKLLAKGTWDYELVDELQPQPGDIVLPKPRYSGFFNTPLDSMLRARGIRNLVFTGIATNVCVESTLR 170 (226)
T ss_pred ccccccccCcccccceeecCCCCcccCcccCCCCCCEEEeCCCcCCCCCCCHHHHHHHCCCCEEEEeccCccHhHHHHHH
Confidence 0 0 000 11346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCeEEEecccccCCCh-hhhhc
Q 030598 147 DAVELDYKSITIIVDATAAATP-EIHAG 173 (174)
Q Consensus 147 ~a~~~G~~~v~vv~Da~~~~~~-~~h~~ 173 (174)
+|+++||+ |+|++|||++.++ +.|++
T Consensus 171 ~A~~~Gy~-v~vv~Da~a~~~~~~~h~~ 197 (226)
T TIGR03614 171 DGFHLEYF-GVVLEDATHQAGPDFMQKA 197 (226)
T ss_pred HHHHCCCE-EEEechhccCCCchHHHHH
Confidence 99999999 9999999999875 57764
No 4
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=100.00 E-value=1.3e-39 Score=245.15 Aligned_cols=162 Identities=25% Similarity=0.283 Sum_probs=134.7
Q ss_pred CCCCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCC
Q 030598 5 KFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTS 84 (174)
Q Consensus 5 ~~~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (174)
+++++|||||||||+|+.+.+ ...+..+++++++++|++.||+.|+||||+++.+.+.......+.. .+. ..+.
T Consensus 26 ~~~~tALlvID~Q~~f~~~~~-~~~~~~~~~~~~i~~li~~ar~~g~pVi~t~~~~~~~~~~~~~~~~-~~~----~~~~ 99 (203)
T cd01013 26 DPKRAVLLVHDMQRYFLDFYD-ESAEPVPQLIANIARLRDWCRQAGIPVVYTAQPGNQTPEQRALLND-FWG----PGLT 99 (203)
T ss_pred CCCcEEEEEEeChhhhhCccc-cccchHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCChhHHHHHHH-Hhh----ccCC
Confidence 568999999999999997422 2344567899999999999999999999997544322111111111 111 1244
Q ss_pred CCCCCCccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEeccccc
Q 030598 85 KGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATA 164 (174)
Q Consensus 85 ~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~ 164 (174)
.|++|+++.++|.+.++|+++.|+++|+|.+|+|+.+|+++||++|+|+|+.|++||++||++|+++||+ |+|++|||+
T Consensus 100 ~~~~~~~~~~~l~~~~~d~vi~K~~~saF~~T~L~~~Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~-v~vv~Da~a 178 (203)
T cd01013 100 ASPEETKIVTELAPQPDDTVLTKWRYSAFKRSPLLERLKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQ-PFVVADAIA 178 (203)
T ss_pred CCCCccccccccCCCCCCEEEeCCCcCCcCCCCHHHHHHHcCCCEEEEEEeccChhHHHHHHHHHHCCCe-EEEeccccC
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCChhhhhc
Q 030598 165 AATPEIHAG 173 (174)
Q Consensus 165 ~~~~~~h~~ 173 (174)
+.+++.|++
T Consensus 179 s~~~~~h~~ 187 (203)
T cd01013 179 DFSLEEHRM 187 (203)
T ss_pred CCCHHHHHH
Confidence 999999975
No 5
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=100.00 E-value=1.2e-39 Score=246.94 Aligned_cols=164 Identities=29% Similarity=0.403 Sum_probs=137.6
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhh-hhhc---------C
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFR-QHLY---------S 76 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~-~~~~---------~ 76 (174)
+++|||||||||+|++ .|.+.+++...+++++++|++.||++|+||||+++.+.+.+..+.... ...+ .
T Consensus 1 m~~ALlvID~Qndf~~-~g~l~~~~~~~~v~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T PRK11609 1 MKRALLLVDLQNDFCA-GGALAVPEGDSTIDVANRLIDWCQSRGIPVIASQDWHPANHGSFASNHGAEPGTQGELDGLPQ 79 (212)
T ss_pred CCcEEEEEeCCccCCC-CCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCcchhhcCCCCCccccccCCccc
Confidence 4799999999999995 567778888999999999999999999999999876655443221100 0000 0
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCeEEeCC------CCCCCC------CCChHHHHHHCCCCEEEEeeccCCHhHHHH
Q 030598 77 TGTVGPTSKGSPGAELVDGLEIKEGDYKVVKM------RFSAFF------ATHLNSFLRTAGIDSLVIVGVQTPNCIRQT 144 (174)
Q Consensus 77 ~~~~~~~~~g~~g~~l~~~l~~~~~~~v~~K~------~~s~f~------~~~l~~~L~~~gi~~lii~G~~t~~CV~~T 144 (174)
..+..+|.+|++|+++.++|.+.++|+++.|. +||+|+ +|+|+.+|+++||++|+|+|++|++||++|
T Consensus 80 ~~~~~~~~~gt~g~el~~~l~~~~~d~vi~K~~~~~~~~~SaF~~~~~~~~T~L~~~L~~~gi~~lii~G~~T~~CV~~T 159 (212)
T PRK11609 80 TWWPDHCVQNSEGAALHPLLNQKAIDAVFHKGENPLIDSYSAFFDNGHRQKTALDDWLREHGITELIVMGLATDYCVKFT 159 (212)
T ss_pred ccCcccccCCCCcCccChhhcccCCCEEEECCCCCCCcccccccCCCCCCCccHHHHHHHcCCCEEEEEEeccCHHHHHH
Confidence 11345789999999999999999899999996 799998 699999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEecccccCCC--hhhhh
Q 030598 145 VFDAVELDYKSITIIVDATAAAT--PEIHA 172 (174)
Q Consensus 145 a~~a~~~G~~~v~vv~Da~~~~~--~~~h~ 172 (174)
|++|+++||+ |+|++|||++++ ++.|+
T Consensus 160 a~dA~~~gy~-v~v~~Da~a~~~~~~~~~~ 188 (212)
T PRK11609 160 VLDALALGYQ-VNVITDGCRGVNLQPQDSA 188 (212)
T ss_pred HHHHHHCCCE-EEEEeeccCCCCCCchhHH
Confidence 9999999999 999999999974 66554
No 6
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=100.00 E-value=9.7e-40 Score=244.70 Aligned_cols=161 Identities=34% Similarity=0.465 Sum_probs=138.4
Q ss_pred eEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhh---------hhcCCCC
Q 030598 9 TALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQ---------HLYSTGT 79 (174)
Q Consensus 9 ~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~---------~~~~~~~ 79 (174)
+|||||||||+|+.+ |.+.+++.+.++++|+++++.+| |.||||+++.|.+.+..+..... ......|
T Consensus 2 tALlvID~Qndf~~~-g~l~~~~~~~~v~~i~~l~~~ar--g~~Vi~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (196)
T cd01011 2 DALLVVDVQNDFCPG-GALAVPGGDAIVPLINALLSLFQ--YDLVVATQDWHPANHASFASNHPGQMPFITLPPGPQVLW 78 (196)
T ss_pred ceEEEEcCCCCCCCC-CcccCCCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCCCcChhhcCCCCCCccccCCCCcCcC
Confidence 699999999999985 77888888999999999999999 99999999877665432211000 0001123
Q ss_pred CCCCCCCCCCCccccCCCCCCCCeEEeCC------CCCCCCC------CChHHHHHHCCCCEEEEeeccCCHhHHHHHHH
Q 030598 80 VGPTSKGSPGAELVDGLEIKEGDYKVVKM------RFSAFFA------THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFD 147 (174)
Q Consensus 80 ~~~~~~g~~g~~l~~~l~~~~~~~v~~K~------~~s~f~~------~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~ 147 (174)
..+|.+|++|+++.++|.+.+++.++.|+ +||+|.+ |+|..+|+++||++|+|||++|++||++|+++
T Consensus 79 ~~~~~~gs~g~~i~~~l~~~~~d~vi~K~~~~~~~~~saF~~~~~~~~t~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~ 158 (196)
T cd01011 79 PDHCVQGTPGAELHPGLPVPDIDLIVRKGTNPDIDSYSAFFDNDRRSSTGLAEYLRERGIDRVDVVGLATDYCVKATALD 158 (196)
T ss_pred CCccCCCCCCCccCcccccCCCCEEEECCCCCCCceeeeeecCCccCchhHHHHHHHCCCCEEEEEEecccHHHHHHHHH
Confidence 46799999999999999998899999994 6899988 99999999999999999999999999999999
Q ss_pred HHHCCCCeEEEecccccCCChhhhhc
Q 030598 148 AVELDYKSITIIVDATAAATPEIHAG 173 (174)
Q Consensus 148 a~~~G~~~v~vv~Da~~~~~~~~h~~ 173 (174)
|+++||+ |+|++|||++.+++.|++
T Consensus 159 a~~~g~~-v~v~~Da~~~~~~~~~~~ 183 (196)
T cd01011 159 ALKAGFE-VRVLEDACRAVDPETIER 183 (196)
T ss_pred HHHCCCE-EEEeccccCCCCHHHHHH
Confidence 9999999 999999999999998874
No 7
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=100.00 E-value=4.4e-40 Score=241.90 Aligned_cols=157 Identities=39% Similarity=0.600 Sum_probs=136.7
Q ss_pred eEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCC
Q 030598 9 TALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSP 88 (174)
Q Consensus 9 ~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 88 (174)
||||||||||+|+ .+.+..++.+.+++++++|++++|+.++||||+++.+...... .......+..++..|++
T Consensus 1 TaLlvID~Q~~f~--~~~~~~~~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~ 73 (174)
T PF00857_consen 1 TALLVIDMQNDFI--NGSLAPPNAEAIIPNINRLLDAARAAGVPVIHTRDIHDSPHWS-----GPFEPKPWPPHCIPGSP 73 (174)
T ss_dssp EEEEEES-BHHHH--TSTTTSTTHHHHHHHHHHHHHHHHHTTEEEEEEEESBSTTTTT-----TSGGHSCHTSCSBTTSG
T ss_pred CEEEEEeChhhhh--cCCccccCHHHHHHHHHHHHHHHHHhCCCeEEEEeeecccccc-----cccccccccccccCCCC
Confidence 7999999999999 3566778889999999999999999999999999887621111 11111122367999999
Q ss_pred CCccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCCh
Q 030598 89 GAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATP 168 (174)
Q Consensus 89 g~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~ 168 (174)
|+++.+++.|.+++.++.|+++|+|.+++|.++|+++|+++|+|+|+.|++||++|+++|+++||+ |+|++|||++.++
T Consensus 74 ~~~l~~~l~~~~~~~vi~K~~~saf~~t~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~-v~v~~Da~~~~~~ 152 (174)
T PF00857_consen 74 GAELVPELAPQPGDPVIEKNRYSAFFGTDLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYR-VIVVEDACASYSP 152 (174)
T ss_dssp GGSBHGGGHCHTTSEEEEESSSSTTTTSSHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-E-EEEEEEEEEBSSH
T ss_pred ccceeeEeecccccceEEeecccccccccccccccccccceEEEcccccCcEEehhHHHHHHCCCE-EEEEChhhcCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhhc
Q 030598 169 EIHAG 173 (174)
Q Consensus 169 ~~h~~ 173 (174)
+.|++
T Consensus 153 ~~h~~ 157 (174)
T PF00857_consen 153 EAHEA 157 (174)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 8
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=100.00 E-value=1.7e-38 Score=230.85 Aligned_cols=155 Identities=38% Similarity=0.599 Sum_probs=137.3
Q ss_pred EEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCC
Q 030598 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPG 89 (174)
Q Consensus 10 aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 89 (174)
|||+||+|++|+.+.+.. .++.+.++++++++++.+|+.|+||||+++.+.+........ .+..+|.+|++|
T Consensus 1 aLliID~Q~~f~~~~~~~-~~~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~ 72 (161)
T cd00431 1 ALLVVDMQNDFVPGGGLL-LPGADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAEL-------LWPPHCVKGTEG 72 (161)
T ss_pred CEEEEECcccCcCCCCCc-CccHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCCCcccccc-------cCcccccCCCch
Confidence 699999999999854432 256789999999999999999999999998777654322111 234578999999
Q ss_pred CccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCChh
Q 030598 90 AELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPE 169 (174)
Q Consensus 90 ~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~ 169 (174)
+++.++|.+.+++.++.|+++|+|.+++|.++|+++|+++|+|+|++|++||++|+++|+++||+ |+|++|||++.+++
T Consensus 73 ~~~~~~l~~~~~~~~i~K~~~saf~~t~l~~~L~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~-v~vi~Da~~s~~~~ 151 (161)
T cd00431 73 AELVPELAPLPDDLVIEKTRYSAFYGTDLDELLRERGIDTLVVCGIATDICVLATARDALDLGYR-VIVVEDACATRDEE 151 (161)
T ss_pred hhcchhhCCCCCCEEEecCCcCCccCCCHHHHHHHCCCCEEEEEecCcChhHHHHHHHHHHCCCE-EEEehhhcccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhc
Q 030598 170 IHAG 173 (174)
Q Consensus 170 ~h~~ 173 (174)
.|++
T Consensus 152 ~~~~ 155 (161)
T cd00431 152 DHEA 155 (161)
T ss_pred HHHH
Confidence 8874
No 9
>PLN02621 nicotinamidase
Probab=100.00 E-value=2.9e-38 Score=236.93 Aligned_cols=156 Identities=29% Similarity=0.444 Sum_probs=133.5
Q ss_pred CCCCCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCC
Q 030598 4 TKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPT 83 (174)
Q Consensus 4 ~~~~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (174)
.+++++|||+|||||+|.. ...++++++++|++.+|++|+||||+++.+.+.. +...+..+ +. ...+
T Consensus 16 ~~~~~~aLlvID~Q~~f~~--------~~~~~v~~i~~Ll~~ar~~~~pVi~t~~~~~~~~-~~~~~~~~-~~---~~~~ 82 (197)
T PLN02621 16 PDPKQAALLVIDMQNYFSS--------MAEPILPALLTTIDLCRRASIPVFFTRHSHKSPS-DYGMLGEW-WD---GDLI 82 (197)
T ss_pred CCCCCEEEEEEeChhhhhh--------hHHHHHHHHHHHHHHHHHCCCcEEEEeccCCCcc-hhhhhhhh-cC---Cccc
Confidence 3678999999999999974 1256899999999999999999999987764321 11122111 00 1237
Q ss_pred CCCCCCCccccCCCC-CCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEeccc
Q 030598 84 SKGSPGAELVDGLEI-KEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDA 162 (174)
Q Consensus 84 ~~g~~g~~l~~~l~~-~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da 162 (174)
.+|++|+++.++|.+ .+++.++.|++||+|.+|+|+.+|+++|+++|+|+|++||+||++|+++|+++||+ |+|++||
T Consensus 83 ~~gs~g~~i~~~L~~~~~~~~vi~K~~~saf~~t~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~-v~v~~Da 161 (197)
T PLN02621 83 LDGTTEAELMPEIGRVTGPDEVVEKSTYSAFYNTRLEERLRKIGVKEVIVTGVMTNLCCETTAREAFVRGFR-VFFSTDA 161 (197)
T ss_pred cCCCCccccchhccCCCCCCEEEECCCcCCCCCCcHHHHHHHCCCCEEEEEecccchhHHHHHHHHHHCCCE-EEEeccc
Confidence 889999999999998 67889999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ccCCChhhhhc
Q 030598 163 TAAATPEIHAG 173 (174)
Q Consensus 163 ~~~~~~~~h~~ 173 (174)
|++.+++.|++
T Consensus 162 ~as~~~~~h~~ 172 (197)
T PLN02621 162 TATANEELHEA 172 (197)
T ss_pred cCCCCHHHHHH
Confidence 99999999974
No 10
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.8e-38 Score=236.93 Aligned_cols=165 Identities=33% Similarity=0.440 Sum_probs=137.8
Q ss_pred CCCCeEEEEEcccccccCCCCccccCCc--cchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCC
Q 030598 5 KFNNTALLVIDMQNDFILDDGLMRVDGG--KAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGP 82 (174)
Q Consensus 5 ~~~~~aLlviD~Q~~f~~~~g~~~~~~~--~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (174)
+|+++|||+|||||+|+.+.+.+..... ..+++++++|++.+|+.|.||||+++.+.+...............+|+.+
T Consensus 2 ~~~~~ALivID~Q~~f~~~~~~~~~~~~~~~~i~~~i~~l~~~ar~~~~~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~h 81 (205)
T COG1335 2 DPAKTALIVVDMQNDFMPGGGSLAALGVDGRKIIPNIAALVDAARAAGQPVIATQDWHPADISSLAGSPESSKLFPWPRH 81 (205)
T ss_pred CccceEEEEEeeeccccCCCCcccccCCchhhhHHHHHHHHHHHHHcCCeEEEecccCCCcccccccccccccCCCCcch
Confidence 6889999999999999997665444333 36999999999999999999999999888765332210000000014467
Q ss_pred CCCCCCCCccccCCCCCCC------CeEEeCC-CCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCe
Q 030598 83 TSKGSPGAELVDGLEIKEG------DYKVVKM-RFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKS 155 (174)
Q Consensus 83 ~~~g~~g~~l~~~l~~~~~------~~v~~K~-~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~ 155 (174)
|.+|++|+++.++|.|... +.++.|. +||+|++|+|+.+|+++||++|++||++||+||++|+++|+++||+
T Consensus 82 ~~~g~~g~~~~~~l~~~~~~~~~~~~~~~~k~~~~saF~~T~L~~~Lr~~~i~~l~v~G~~td~CV~~T~~~A~~~gy~- 160 (205)
T COG1335 82 DVKGTPGAELLGELPPAVDDAQLVPEDVIFKKHGYSAFAGTDLDDILRNLGIDTVVVCGIATDICVLATARDAFDLGYQ- 160 (205)
T ss_pred hcCCCcchhhccccccccccccccceeeeccccccCcccCCCHHHHHHHCCCCEEEEeeeehhHHHHHHHHHHHHCCCe-
Confidence 9999999999999998876 7788887 9999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCChhh
Q 030598 156 ITIIVDATAAATPEI 170 (174)
Q Consensus 156 v~vv~Da~~~~~~~~ 170 (174)
|++++|||++.+.+.
T Consensus 161 v~v~~da~~~~~~~~ 175 (205)
T COG1335 161 VTLVEDATAGSSLDR 175 (205)
T ss_pred EEEehhhcccCCCCh
Confidence 999999999998443
No 11
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=100.00 E-value=5.4e-38 Score=227.24 Aligned_cols=143 Identities=36% Similarity=0.476 Sum_probs=128.6
Q ss_pred EEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCC
Q 030598 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPG 89 (174)
Q Consensus 10 aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 89 (174)
|||+|||||+|+.+.+ ...+...++++++++++.+|++|+||||+++.+.+.. .+.+|++|
T Consensus 1 aLlviD~Q~~f~~~~~--~~~~~~~~v~~i~~li~~~r~~~~~Vi~~~~~~~~~~-----------------~~~~gt~g 61 (155)
T cd01014 1 ALLVIDVQNGYFDGGL--PPLNNEAALENIAALIAAARAAGIPVIHVRHIDDEGG-----------------SFAPGSEG 61 (155)
T ss_pred CEEEEeCchhhhCCCC--CcCCHHHHHHHHHHHHHHHHHCCCeEEEEEeccCCCC-----------------CCCCCCCc
Confidence 6999999999997433 2236788999999999999999999999986543321 25679999
Q ss_pred CccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCChh
Q 030598 90 AELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPE 169 (174)
Q Consensus 90 ~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~ 169 (174)
+++.++|.+.+.+.++.|+++|+|.+++|.++|+++|+++|+|+|++|++||++||++|+++||+ |+|++|||++.+++
T Consensus 62 ~~l~~~l~~~~~d~v~~K~~~saf~~t~l~~~L~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~-v~vi~Da~~s~~~~ 140 (155)
T cd01014 62 WEIHPELAPLEGETVIEKTVPNAFYGTDLEEWLREAGIDHLVICGAMTEMCVDTTVRSAFDLGYD-VTVVADACATFDLP 140 (155)
T ss_pred cccchhhcCCCCCEEEeCCCCCCcCCCCHHHHHHHCCCCEEEEEeeccchhHHHHHHHHHHCCCc-EEEecccccCCCcc
Confidence 99999999988899999999999999999999999999999999999999999999999999999 99999999999988
Q ss_pred hhh
Q 030598 170 IHA 172 (174)
Q Consensus 170 ~h~ 172 (174)
.|+
T Consensus 141 ~~~ 143 (155)
T cd01014 141 DHG 143 (155)
T ss_pred cCC
Confidence 876
No 12
>PLN02743 nicotinamidase
Probab=100.00 E-value=4.2e-38 Score=241.18 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=134.4
Q ss_pred CCCCeEEEEEcccccccCCC-Ccccc----CCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCC
Q 030598 5 KFNNTALLVIDMQNDFILDD-GLMRV----DGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGT 79 (174)
Q Consensus 5 ~~~~~aLlviD~Q~~f~~~~-g~~~~----~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (174)
+++++|||||||||+|+.++ |.+.. +....+++++++|++.||++|+||||+++.|.+.... .. +
T Consensus 24 ~~~~tALlVIDmQndF~~~~~g~l~~~~~~~~~~~iv~~i~~Ll~~aR~~g~pVI~~~d~h~~~~~~-~~---------~ 93 (239)
T PLN02743 24 GDVRTGLVLVDEVNGFCTVGAGNLAPREPDKQISKMVDESARLAREFCERKWPVLAFLDSHHPDKPE-HP---------Y 93 (239)
T ss_pred CCCCEEEEEEeCcCCccCCCccccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCccCCCccc-cC---------C
Confidence 56889999999999999864 33332 2345689999999999999999999999888665432 11 2
Q ss_pred CCCCCCCCCCCccccCCCCCCCCe---EEeCCCCCCCCCC------C-hHHHHHHCCCCEEEEeeccCCHhHH---HHHH
Q 030598 80 VGPTSKGSPGAELVDGLEIKEGDY---KVVKMRFSAFFAT------H-LNSFLRTAGIDSLVIVGVQTPNCIR---QTVF 146 (174)
Q Consensus 80 ~~~~~~g~~g~~l~~~l~~~~~~~---v~~K~~~s~f~~~------~-l~~~L~~~gi~~lii~G~~t~~CV~---~Ta~ 146 (174)
..+|..|++|+++.++|.|.+++. ++.|++||+|+++ + |..+|+++||++|+|+|++||+||+ +||+
T Consensus 94 ~~h~v~Gt~g~ei~~~L~p~~~~~~v~v~~K~~~saF~~t~~~~~t~~L~~~Lr~~gI~~liv~Gv~T~~CV~~~~sTar 173 (239)
T PLN02743 94 PPHCIVGTGEENLVPALQWLENDPNVTLRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGICTDICVLDFVASAL 173 (239)
T ss_pred CCccCCCCcccccchhhCCCCCCceEEEEecCccccccccccccCccHHHHHHHHCCCCEEEEEEeCcchhccChHHHHH
Confidence 356999999999999999887775 4679999999876 3 7999999999999999999999998 9999
Q ss_pred HHHHCCC-----CeEEEecccccCCChhhhhc
Q 030598 147 DAVELDY-----KSITIIVDATAAATPEIHAG 173 (174)
Q Consensus 147 ~a~~~G~-----~~v~vv~Da~~~~~~~~h~~ 173 (174)
+|+++|| + |+|++|||++.+.+.|.+
T Consensus 174 dA~~~Gy~~~~~~-V~Vv~DA~at~d~~~h~~ 204 (239)
T PLN02743 174 SARNHGILPPLED-VVVYSRGCATYDLPLHVA 204 (239)
T ss_pred HHHHcCCCCCCce-EEEeCCccccCChhhhhh
Confidence 9999999 8 999999999999988854
No 13
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=100.00 E-value=9.8e-38 Score=236.30 Aligned_cols=166 Identities=27% Similarity=0.356 Sum_probs=139.7
Q ss_pred CCCCCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhh-------hhcC
Q 030598 4 TKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQ-------HLYS 76 (174)
Q Consensus 4 ~~~~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~-------~~~~ 76 (174)
-++.++|||||||||+|+.+ |.+.+++..+++++++++++. ..+.+|+|+.+.|.+.+..+..+.. ....
T Consensus 8 ~~~~~~ALlVIDmQndF~~~-g~l~~~~~~~iv~~i~~l~~~--~~~~~Vi~~~d~h~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T PTZ00331 8 VSSTNDALIIVDVQNDFCKG-GSLAVPDAEEVIPVINQVRQS--HHFDLVVATQDWHPPNHISFASNHGKPKILPDGTTQ 84 (212)
T ss_pred cCCCCCEEEEEcCCCCCCCC-CccCCCCHHHHHHHHHHHHHh--cCCCEEEEecCcCCCCCcChhhcCCCCCcccCCCcc
Confidence 47889999999999999986 788888999999999999994 2445788887777665533211100 0001
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCeEEeCC------CCCCC-----CCCChHHHHHHCCCCEEEEeeccCCHhHHHHH
Q 030598 77 TGTVGPTSKGSPGAELVDGLEIKEGDYKVVKM------RFSAF-----FATHLNSFLRTAGIDSLVIVGVQTPNCIRQTV 145 (174)
Q Consensus 77 ~~~~~~~~~g~~g~~l~~~l~~~~~~~v~~K~------~~s~f-----~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta 145 (174)
..+..+|.+|++|+++.++|.+.+++.++.|+ +||+| .+|+|+.+|+++||++|+|||++||+||++|+
T Consensus 85 ~~~~~h~~~gs~g~~i~~~L~~~~~~~vi~K~~~~~~~~~saF~~~~~~~t~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta 164 (212)
T PTZ00331 85 GLWPPHCVQGTKGAQLHKDLVVERIDIIIRKGTNRDVDSYSAFDNDKGSKTGLAQILKAHGVRRVFICGLAFDFCVLFTA 164 (212)
T ss_pred CCCcccccCCCCcccCChhhccCCCcEEEECCCCCCCceecCccCCCCCCchHHHHHHHCCCCEEEEEEeccCHHHHHHH
Confidence 12345789999999999999999999999997 69999 99999999999999999999999999999999
Q ss_pred HHHHHCCCCeEEEecccccCCChhhhhc
Q 030598 146 FDAVELDYKSITIIVDATAAATPEIHAG 173 (174)
Q Consensus 146 ~~a~~~G~~~v~vv~Da~~~~~~~~h~~ 173 (174)
++|.++||+ |+|++|||++.+++.|++
T Consensus 165 ~~a~~~g~~-v~vv~Da~~~~~~~~~~~ 191 (212)
T PTZ00331 165 LDAVKLGFK-VVVLEDATRAVDPDAISK 191 (212)
T ss_pred HHHHHCCCE-EEEeCcCccCCCHHHHHH
Confidence 999999999 999999999999999974
No 14
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=100.00 E-value=2.6e-36 Score=218.87 Aligned_cols=132 Identities=23% Similarity=0.336 Sum_probs=118.0
Q ss_pred EEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCC
Q 030598 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPG 89 (174)
Q Consensus 10 aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 89 (174)
|||+|||||+|+.. ..+.++++++++++++.||++|+||||++.. + ++.
T Consensus 1 aLlvID~Q~~f~~~-----~~~~~~~~~~i~~l~~~ar~~g~pVi~~~~~--~------------------------~~~ 49 (157)
T cd01012 1 ALLLVDVQEKLAPA-----IKSFDELINNTVKLAKAAKLLDVPVILTEQY--P------------------------KGL 49 (157)
T ss_pred CEEEEeCcHHHHHh-----hcCHHHHHHHHHHHHHHHHhcCCCEEEEeeC--C------------------------CCC
Confidence 69999999999862 2236889999999999999999999999421 1 112
Q ss_pred CccccCCCC-CCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCCh
Q 030598 90 AELVDGLEI-KEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATP 168 (174)
Q Consensus 90 ~~l~~~l~~-~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~ 168 (174)
.++.++|.+ .+++.++.|+++|+|.+|+|+.+|+++|+++|+|+|+.||+||++|+++|+++||+ |+|++|||++.++
T Consensus 50 g~~~~~l~~~~~~~~vi~K~~~saf~~t~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~-v~v~~Da~as~~~ 128 (157)
T cd01012 50 GPTVPELREVFPDAPVIEKTSFSCWEDEAFRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYE-VFVVADACGSRSK 128 (157)
T ss_pred CCchHHHHhhCCCCCceecccccCcCCHHHHHHHHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCE-EEEEeeCCCCCCH
Confidence 268889988 78899999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhhc
Q 030598 169 EIHAG 173 (174)
Q Consensus 169 ~~h~~ 173 (174)
+.|++
T Consensus 129 ~~h~~ 133 (157)
T cd01012 129 EDHEL 133 (157)
T ss_pred HHHHH
Confidence 99975
No 15
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.3e-33 Score=199.77 Aligned_cols=163 Identities=28% Similarity=0.314 Sum_probs=136.4
Q ss_pred CCCCCCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCC
Q 030598 3 DTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGP 82 (174)
Q Consensus 3 ~~~~~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (174)
+++|++.+|||.||||.|+++.+. ..+..+.++.||.+|-..|+++|+||+||.+...-...+.....+ ++++
T Consensus 25 ~~~p~RavLLIhDMQ~YFv~~~~~-~~~~~~~li~Ni~~Lr~~~~~~giPVvyTaqp~~qs~~draLL~d------~WGp 97 (218)
T COG1535 25 RFEPKRAVLLIHDMQNYFVSPWGE-NCPLMEQLIANIAKLRIWCKQAGIPVVYTAQPGEQSPEDRALLKD------FWGP 97 (218)
T ss_pred ccCcccceeeeehhHHhhcCCCCC-CCccHHHHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHHHHHHHH------hcCC
Confidence 368999999999999999997554 344668899999999999999999999996544221111111111 1344
Q ss_pred CCC-CCCCCccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecc
Q 030598 83 TSK-GSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVD 161 (174)
Q Consensus 83 ~~~-g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~D 161 (174)
... +....++++++.|..+|.++.|.+||+|+.++|++.||+.|+++|||+|+.+++||+.||++|+.++++ +++|.|
T Consensus 98 gl~~~p~~~~vv~~l~P~~~D~vL~kwrYsAF~~s~Llq~lr~~grdQLIItGVyaHigcl~TA~dAFm~diq-pfmV~D 176 (218)
T COG1535 98 GLTASPEQQKVVDELAPGADDTVLTKWRYSAFHRSPLLQMLREKGRDQLIITGVYAHIGCLTTATDAFMRDIQ-PFMVAD 176 (218)
T ss_pred CCCCChhhhhhHHhcCCCCCceEEeeeehhhhhcChHHHHHHHcCCCcEEEeehhhhhhhhhhHHHHHHhcCc-ceeehh
Confidence 433 334667889999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cccCCChhhhhc
Q 030598 162 ATAAATPEIHAG 173 (174)
Q Consensus 162 a~~~~~~~~h~~ 173 (174)
+++.+|.+.|.+
T Consensus 177 AlaDfs~~~H~m 188 (218)
T COG1535 177 ALADFSEEEHRM 188 (218)
T ss_pred hhhhccHHHHHH
Confidence 999999999974
No 16
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]
Probab=99.95 E-value=5.4e-28 Score=172.83 Aligned_cols=164 Identities=26% Similarity=0.312 Sum_probs=122.9
Q ss_pred CeEEEEEcccccccCCCCccc-cCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhh--------------
Q 030598 8 NTALLVIDMQNDFILDDGLMR-VDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQ-------------- 72 (174)
Q Consensus 8 ~~aLlviD~Q~~f~~~~g~~~-~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~-------------- 72 (174)
+.+||||||||+|+++.+.+. .++....+.-+++++..+-..=..||+|.+.|+.++..+.....
T Consensus 1 ~~~l~vvd~qndfi~~~~~~~s~~E~~~~i~Pi~~lLq~~d~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~t~~~~~ 80 (223)
T KOG4003|consen 1 MKTLIVVDMQNDFISPLGSLTSVPEGEELINPISDLLQDADRDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTYTYHSPR 80 (223)
T ss_pred CceEEEEeccccccccccccccCCCchhhhccHHHHHHhcccccceEEEecccCcccceehhhhccCCCCCCCCcccCCC
Confidence 368999999999999866554 33444445555555554332223678887655444432211100
Q ss_pred ---hhcCCC--CCCCCCCCCCCCccccCCCCCCCCeEEeCC------CCCCCC------CCChHHHHHHCCCCEEEEeec
Q 030598 73 ---HLYSTG--TVGPTSKGSPGAELVDGLEIKEGDYKVVKM------RFSAFF------ATHLNSFLRTAGIDSLVIVGV 135 (174)
Q Consensus 73 ---~~~~~~--~~~~~~~g~~g~~l~~~l~~~~~~~v~~K~------~~s~f~------~~~l~~~L~~~gi~~lii~G~ 135 (174)
+.+..+ ++.+|++++||.++++++-..+...++.|. .||+|+ .++|..+|++.+|+.|+|+|+
T Consensus 81 ~~d~V~~~~vl~p~HCv~ntwG~d~~~~~~~~~~~~~I~KG~D~~~eSYSaF~D~~GR~kt~L~~~L~k~~Id~V~IAGv 160 (223)
T KOG4003|consen 81 PGDDVTQEGILWPVHCVKNTWGVDQIMDQVVTKHIKIIDKGFDTDRESYSAFHDIWGRHKTDLNKYLEKHHIDEVYIAGV 160 (223)
T ss_pred cCCchheeeecchhhhhccCCCCCcchhhhhhhheeecccCcchhHHHHHHHhhhcccchhhHHHHHHHcCCCeEEEeeh
Confidence 011111 246899999999999999988888889886 799996 489999999999999999999
Q ss_pred cCCHhHHHHHHHHHHCCCCeEEEecccccCCChhhhh
Q 030598 136 QTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIHA 172 (174)
Q Consensus 136 ~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~~h~ 172 (174)
++|+||..||++|.+.||. .+|+.+|+++.+.+.|+
T Consensus 161 A~DICVk~TaL~A~~~~y~-t~vI~E~~~Gsst~si~ 196 (223)
T KOG4003|consen 161 ALDICVKATALSAAELGYK-TTVILEYTRGSSTPSIS 196 (223)
T ss_pred hhHHHHHHHHhhHHHhCcc-eeeehhhhccCCCcccc
Confidence 9999999999999999999 99999999998877664
No 17
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=99.86 E-value=1.1e-21 Score=138.86 Aligned_cols=133 Identities=23% Similarity=0.356 Sum_probs=108.1
Q ss_pred CCCCCCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCC
Q 030598 3 DTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGP 82 (174)
Q Consensus 3 ~~~~~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (174)
+-+|.++++++.|||+.|.+ +++-.++++++..+|++++|..++|+|.| +++|++- ++
T Consensus 10 rl~P~~t~fflCDmQEKFrp-----ai~yf~~iIs~~~rLl~aaril~vP~ivT--EqYP~gL---------------G~ 67 (201)
T KOG4044|consen 10 RLNPSSTVFFLCDMQEKFRP-----AIPYFPSIISVTTRLLAAARILQVPVIVT--EQYPEGL---------------GK 67 (201)
T ss_pred ecCCCceEEEEechHhhhcc-----cchhhHHHHHHHHHHHHhhhhhCCcEEee--ccccccc---------------cc
Confidence 45899999999999999987 45556789999999999999999999998 5555431 11
Q ss_pred CCCCCCCCccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHH-CCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecc
Q 030598 83 TSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRT-AGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVD 161 (174)
Q Consensus 83 ~~~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~-~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~D 161 (174)
-.++|.......++.|+.+|.+. ++.+.-+++ .|.++|+++|+.|+.||++|+++++++|.+ |+||.|
T Consensus 68 ---------TV~eLd~~g~~~~~~KT~FSM~~-p~v~~s~~~i~~~k~VvL~GiEthvCv~qTa~dLl~rgl~-VhvVaD 136 (201)
T KOG4044|consen 68 ---------TVPELDIEGLKLNLSKTKFSMVL-PPVEDSLKDIFGGKTVVLFGIETHVCVLQTALDLLERGLN-VHVVAD 136 (201)
T ss_pred ---------cchhhchhhhcccccccceeeeC-chHHHHHHhccCCCeEEEEecchheehHHHHHHHHhCCce-EEEEee
Confidence 22344333233458999999995 555555555 788999999999999999999999999999 999999
Q ss_pred cccCCCh
Q 030598 162 ATAAATP 168 (174)
Q Consensus 162 a~~~~~~ 168 (174)
||++++.
T Consensus 137 acSSRs~ 143 (201)
T KOG4044|consen 137 ACSSRSN 143 (201)
T ss_pred hhccccc
Confidence 9999873
No 18
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=84.79 E-value=1.6 Score=31.85 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=38.1
Q ss_pred ChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 117 HLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 117 ~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
.+.++|...|+..+..-|..+|=++.+-+..+.+.|++ |+|++
T Consensus 90 ~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~-v~IvS 132 (169)
T PF02739_consen 90 YIKELLEALGIPVLEVPGYEADDVIATLAKKASEEGFE-VIIVS 132 (169)
T ss_dssp HHHHHHHHTTSEEEEETTB-HHHHHHHHHHHHHHTTCE-EEEE-
T ss_pred HHHHHHHHCCCCEecCCCCcHHHHHHHHHhhhccCCCE-EEEEc
Confidence 46788889999999999999999999999999999999 99875
No 19
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=71.18 E-value=4.2 Score=31.32 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=39.6
Q ss_pred CCCCCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEeccc
Q 030598 4 TKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREH 60 (174)
Q Consensus 4 ~~~~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~ 60 (174)
..+.++.+++||.|-.=..... ..-+-...+....+-+..+|..|.|||-....+
T Consensus 61 ~~~krpIv~lVD~~sQa~grre--EllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~ 115 (234)
T PF06833_consen 61 SGPKRPIVALVDVPSQAYGRRE--ELLGINQALAHLAKAYALARLAGHPVIGLVYGK 115 (234)
T ss_pred cCCCCCEEEEEeCCccccchHH--HHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 4678899999999955433111 112346678888899999999999999885443
No 20
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=71.05 E-value=2.3 Score=22.78 Aligned_cols=19 Identities=32% Similarity=0.674 Sum_probs=15.9
Q ss_pred CCCCCCCChHHHHHHCCCC
Q 030598 110 FSAFFATHLNSFLRTAGID 128 (174)
Q Consensus 110 ~s~f~~~~l~~~L~~~gi~ 128 (174)
|+.++..+|..+|..+||.
T Consensus 1 fdtWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 1 FDTWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCCCHHHHHHHHHHcCCC
Confidence 5677788999999999874
No 21
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=64.52 E-value=14 Score=28.41 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=38.4
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
..+.+.|+..|+..+..-|..+|-.+.+-|..+...|++ ++|++
T Consensus 88 ~~~~~~l~~~gi~~i~~~~~EADD~ia~la~~~~~~g~~-~~I~S 131 (240)
T cd00008 88 PLIKELLEALGIPVLEIEGYEADDVIGTLAKKAEAEGYK-VVIVS 131 (240)
T ss_pred HHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHcCCe-EEEEe
Confidence 456778888999999999999998888888888888999 98887
No 22
>smart00475 53EXOc 5'-3' exonuclease.
Probab=64.13 E-value=16 Score=28.57 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=38.6
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
+.+.+.|+..|+..+..-|..+|-.+.+-|..+...|+. ++|++
T Consensus 87 ~~~~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~g~~-~~IvS 130 (259)
T smart00475 87 PLIKELLDALGIPVLEVEGYEADDVIATLAKKAEAEGYE-VRIVS 130 (259)
T ss_pred HHHHHHHHHCCCCEEeeCCcCHHHHHHHHHHHHHhCCCe-EEEEe
Confidence 567778889999999999999999888888888888999 98887
No 23
>PRK09482 flap endonuclease-like protein; Provisional
Probab=61.62 E-value=15 Score=28.73 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=39.5
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
+.+.+.|+..|+..+..-|+.+|=.+.+-|..+.+.|++ |+|++
T Consensus 87 ~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~-v~I~S 130 (256)
T PRK09482 87 PAIRAAFEELGIDSWHADGNEADDLIATLAVKVAQAGHQ-ATIVS 130 (256)
T ss_pred HHHHHHHHhCCCCEeccCCcCHHHHHHHHHHHHHHCCCe-EEEEE
Confidence 456788888999999999999999999989999999999 99887
No 24
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=60.93 E-value=68 Score=24.45 Aligned_cols=103 Identities=13% Similarity=0.026 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCC-CCCCccccCCCCCCCCeEEe-CCCCCCC
Q 030598 36 VPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKG-SPGAELVDGLEIKEGDYKVV-KMRFSAF 113 (174)
Q Consensus 36 ~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~~l~~~l~~~~~~~v~~-K~~~s~f 113 (174)
..++.+-++..++.|+..+|.-.. -++++++ +.|-++..+++....+..+. |-..+
T Consensus 18 ~~~l~~~~~~l~~~~~~~~H~Dim--------------------Dg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~-- 75 (228)
T PTZ00170 18 FSKLADEAQDVLSGGADWLHVDVM--------------------DGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVS-- 75 (228)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc--------------------cCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCC--
Confidence 356778888889999999998311 0345555 45666777776542122222 22211
Q ss_pred CCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecc
Q 030598 114 FATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVD 161 (174)
Q Consensus 114 ~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~D 161 (174)
......+.+.+.|++.+.+=+-++..-+..++..+.++|.. +-|.-.
T Consensus 76 ~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~-~gval~ 122 (228)
T PTZ00170 76 NPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMK-VGVAIK 122 (228)
T ss_pred CHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCe-EEEEEC
Confidence 12234566777899999998887766567778888889988 766544
No 25
>PHA00350 putative assembly protein
Probab=60.92 E-value=15 Score=30.66 Aligned_cols=50 Identities=20% Similarity=0.053 Sum_probs=31.4
Q ss_pred CeEEEEEc-ccccccCCCCcc------ccCCc------cchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 8 NTALLVID-MQNDFILDDGLM------RVDGG------KAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 8 ~~aLlviD-~Q~~f~~~~g~~------~~~~~------~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
+-+||||| +|+-| ++...+ .-|.. ....+...+.+..+|..|+.|++++.
T Consensus 81 ~gaLIViDEaq~~~-p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ 143 (399)
T PHA00350 81 RGALYVIDEAQMIF-PKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTP 143 (399)
T ss_pred CCCEEEEECchhhc-CCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeC
Confidence 45799999 55544 432110 01111 22356777788889999999999965
No 26
>PHA02567 rnh RnaseH; Provisional
Probab=60.89 E-value=22 Score=28.56 Aligned_cols=42 Identities=7% Similarity=0.016 Sum_probs=37.2
Q ss_pred hHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 118 LNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 118 l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
+.+++...|+..+.+-|+.+|=++.+-|..+.+.|+. |+|++
T Consensus 112 i~el~~~~gi~~l~~~g~EADDvIgTLA~k~~~~g~~-VvIvS 153 (304)
T PHA02567 112 VDEIKENMPYKVMKIDKAEADDIIAVLTKKFSAEGRP-VLIVS 153 (304)
T ss_pred HHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHhCCCc-EEEEe
Confidence 4556666799999999999999999999999999999 99987
No 27
>TIGR03586 PseI pseudaminic acid synthase.
Probab=58.55 E-value=56 Score=26.56 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCCCccccCCCCCCCCeEEeCCCCCCCCCC
Q 030598 37 PNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFAT 116 (174)
Q Consensus 37 ~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~~ 116 (174)
+-..+|.+.+++.|++++-+..+.. ..++..++.. + .+.-...+. .+.
T Consensus 77 e~~~~L~~~~~~~Gi~~~stpfd~~---------------------------svd~l~~~~v---~-~~KI~S~~~-~n~ 124 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFSSPFDET---------------------------AVDFLESLDV---P-AYKIASFEI-TDL 124 (327)
T ss_pred HHHHHHHHHHHHhCCcEEEccCCHH---------------------------HHHHHHHcCC---C-EEEECCccc-cCH
Confidence 3446788889999999887743211 1122222311 1 122222222 456
Q ss_pred ChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCC
Q 030598 117 HLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAAT 167 (174)
Q Consensus 117 ~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~ 167 (174)
+|.+.+.+.|..-|+=+|++|--=|...+.-..+.|-.++.++. |+++++
T Consensus 125 ~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Llh-C~s~YP 174 (327)
T TIGR03586 125 PLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLK-CTSSYP 174 (327)
T ss_pred HHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEe-cCCCCC
Confidence 77777777777777777876655566666556666763155554 766654
No 28
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=58.48 E-value=64 Score=23.72 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=69.3
Q ss_pred EEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCCCc
Q 030598 12 LVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAE 91 (174)
Q Consensus 12 lviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~ 91 (174)
|++|+-|-.+.- ...+..+.+.+.+...+.+|+.++.+.. .++.. ...
T Consensus 31 vi~DlDNTLv~w-------d~~~~tpe~~~W~~e~k~~gi~v~vvSN-n~e~R--V~~---------------------- 78 (175)
T COG2179 31 VILDLDNTLVPW-------DNPDATPELRAWLAELKEAGIKVVVVSN-NKESR--VAR---------------------- 78 (175)
T ss_pred EEEeccCceecc-------cCCCCCHHHHHHHHHHHhcCCEEEEEeC-CCHHH--HHh----------------------
Confidence 677888887762 2355678888999999999999888732 11100 000
Q ss_pred cccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCC--CCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccC
Q 030598 92 LVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAG--IDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAA 165 (174)
Q Consensus 92 l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~g--i~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~ 165 (174)
+.+.| .-+++..-..++ ...|...|++.+ .++++++|=.. .+-++.+...|++ ++.|+-...+
T Consensus 79 ~~~~l---~v~fi~~A~KP~---~~~fr~Al~~m~l~~~~vvmVGDqL----~TDVlggnr~G~~-tIlV~Pl~~~ 143 (175)
T COG2179 79 AAEKL---GVPFIYRAKKPF---GRAFRRALKEMNLPPEEVVMVGDQL----FTDVLGGNRAGMR-TILVEPLVAP 143 (175)
T ss_pred hhhhc---CCceeecccCcc---HHHHHHHHHHcCCChhHEEEEcchh----hhhhhcccccCcE-EEEEEEeccc
Confidence 11112 122332222222 456888898876 56899999653 4556788899999 8887755543
No 29
>PRK14976 5'-3' exonuclease; Provisional
Probab=57.27 E-value=23 Score=28.12 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=38.4
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
+.+.++|+..|+..+..-|..+|=.+.+-+..+.+.|+. |.|++
T Consensus 93 ~~i~~~l~~~gi~~~~~~g~EADDviatla~~~~~~g~~-v~IvS 136 (281)
T PRK14976 93 PLLKKILKLAGIKWEEQPGYEADDLIGSLAKKLSKQNIT-VLIYS 136 (281)
T ss_pred HHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHCCCe-EEEEe
Confidence 455678888999999999999998888888889999999 98887
No 30
>PHA00439 exonuclease
Probab=56.73 E-value=28 Score=27.76 Aligned_cols=43 Identities=9% Similarity=0.207 Sum_probs=36.9
Q ss_pred ChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCC-CeEEEec
Q 030598 117 HLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDY-KSITIIV 160 (174)
Q Consensus 117 ~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~-~~v~vv~ 160 (174)
-+.+.+...|+..+.+-|+.+|=++-+-+..+...|+ + |+|++
T Consensus 101 ~i~el~~~~gi~~i~~~G~EADDvIgtla~~~~~~g~~~-vvIvS 144 (286)
T PHA00439 101 FLEELMAREEWKSILEPGLEGDDVMGIIGTNPSLFGFKK-AVLVS 144 (286)
T ss_pred HHHHHHHhCCCCEEeeCCccHHHHHHHHHHHHHHCCCCe-EEEEe
Confidence 3456667789999999999999999888888888999 8 98886
No 31
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=54.58 E-value=20 Score=25.27 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=28.7
Q ss_pred CChHHHHHHCCCCEEEEeeccC-CHhHHHHHHHHHHCCCCeEEEe
Q 030598 116 THLNSFLRTAGIDSLVIVGVQT-PNCIRQTVFDAVELDYKSITII 159 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t-~~CV~~Ta~~a~~~G~~~v~vv 159 (174)
.++.++++++++++|+|+==.. ...+..=...+.+.|.+ |.++
T Consensus 131 ~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~-v~~v 174 (175)
T PF13727_consen 131 DDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVR-VRVV 174 (175)
T ss_dssp GGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-E-EEE-
T ss_pred HHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCE-EEEe
Confidence 6899999999999999995443 45565666667777888 8776
No 32
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=54.09 E-value=34 Score=27.56 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEeccc
Q 030598 121 FLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDA 162 (174)
Q Consensus 121 ~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da 162 (174)
..+++|.++|+.+|-++..-..++|..|..+|++ ++++...
T Consensus 64 ~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~-~~ivvp~ 104 (329)
T PRK14045 64 DALSRGADVVITVGAVHSNHAFVTGLAAKKLGLD-AVLVLRG 104 (329)
T ss_pred HHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCe-EEEEEeC
Confidence 3445788888876767666677888888899999 7777653
No 33
>PRK10098 putative dehydrogenase; Provisional
Probab=53.81 E-value=22 Score=29.22 Aligned_cols=46 Identities=28% Similarity=0.309 Sum_probs=36.8
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCC
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDP 62 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~ 62 (174)
++.++++||-|++|-. -.....+...++.||+.|+-++.++..++-
T Consensus 76 ~~~a~~~vDg~~g~G~----------~a~~~Am~~aie~Ar~~Gi~~v~vrnS~H~ 121 (350)
T PRK10098 76 DAGAVLTLDGDRGFGQ----------VVAHEAMALGIERARQHGICAVALRNSHHI 121 (350)
T ss_pred cCCcEEEEECCCCccH----------HHHHHHHHHHHHHHHHhCEEEEEEecCCCc
Confidence 4678999999999855 234667888999999999999999876653
No 34
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=51.52 E-value=50 Score=26.67 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEeccc
Q 030598 120 SFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDA 162 (174)
Q Consensus 120 ~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da 162 (174)
...+++|+++|+-+|-++..-..++|..+..+|++ ++++.+.
T Consensus 60 ~~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~-~~iv~~~ 101 (337)
T PRK12390 60 PDALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMK-CVLVQEN 101 (337)
T ss_pred HHHHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCe-EEEEeCC
Confidence 33447899999988766666667888889999999 8888543
No 35
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=51.48 E-value=45 Score=26.92 Aligned_cols=45 Identities=33% Similarity=0.423 Sum_probs=36.2
Q ss_pred ChHHHHH---HCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecc
Q 030598 117 HLNSFLR---TAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVD 161 (174)
Q Consensus 117 ~l~~~L~---~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~D 161 (174)
.|+.+|- ..|.++++=+|-.-+.-+.+||.-|..+|++.|.+++.
T Consensus 51 KLefll~eal~~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~ 98 (323)
T COG2515 51 KLEFLLGEALRKGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILEN 98 (323)
T ss_pred HHHHHHhhhhhcCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEec
Confidence 4555553 37999999999999999999999999999994444444
No 36
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.94 E-value=35 Score=24.62 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=33.4
Q ss_pred ChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCChh
Q 030598 117 HLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPE 169 (174)
Q Consensus 117 ~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~ 169 (174)
++...++++|++.|+++-+.--..--+=++ .....-+ |.++.|..+.+...
T Consensus 63 ~~~d~f~~kGVD~I~cVSVND~FVm~AWak-~~g~~~~-I~fi~Dg~geFTk~ 113 (165)
T COG0678 63 ELADEFKAKGVDEIYCVSVNDAFVMNAWAK-SQGGEGN-IKFIPDGNGEFTKA 113 (165)
T ss_pred HHHHHHHHcCCceEEEEEeCcHHHHHHHHH-hcCCCcc-EEEecCCCchhhhh
Confidence 466777899999999998864333222222 2222226 99999998877653
No 37
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=49.37 E-value=1.1e+02 Score=25.11 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCChhhhh
Q 030598 115 ATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIHA 172 (174)
Q Consensus 115 ~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~~h~ 172 (174)
+.+|.+++.+.|-.-|+=+|+++..-+..++.-..+.|-. =+++--|+++++...++
T Consensus 136 ~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~-~i~LLhC~s~YPap~ed 192 (347)
T COG2089 136 DLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNP-DIALLHCTSAYPAPFED 192 (347)
T ss_pred ChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCC-CeEEEEecCCCCCCHHH
Confidence 5789999999999999999999999999999999999987 67888899888754443
No 38
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=48.13 E-value=50 Score=23.88 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=26.0
Q ss_pred CCCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 6 FNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 6 ~~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
....|++|||...+. .....+.++.++..++|++.+-
T Consensus 93 ~~D~ailvVda~~g~---------------~~~~~~~l~~~~~~~~p~ivvl 129 (188)
T PF00009_consen 93 QADIAILVVDANDGI---------------QPQTEEHLKILRELGIPIIVVL 129 (188)
T ss_dssp TSSEEEEEEETTTBS---------------THHHHHHHHHHHHTT-SEEEEE
T ss_pred ccccceeeeeccccc---------------ccccccccccccccccceEEee
Confidence 346788888887662 3446677888899999977773
No 39
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=46.19 E-value=40 Score=21.99 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=30.4
Q ss_pred EEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 11 LLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 11 LlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
+++.|+-.-.+...............+.+.++++..+++|.+++.++.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~ 48 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATN 48 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeC
Confidence 356777766665322111122345677788888888899998877753
No 40
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=44.16 E-value=37 Score=27.69 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=36.0
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccC
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHD 61 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~ 61 (174)
++.+++++|-|++|-. -.....+...++.||+.|+-++.++..++
T Consensus 72 ~~~a~a~~Dg~~g~G~----------~~~~~am~~aiekAr~~Gi~~v~vrns~H 116 (332)
T PRK13260 72 SLGAIEQWDAQRAIGN----------LTAKKMMDRAIELARDHGIGLVALRNANH 116 (332)
T ss_pred cCCcEEEEECCCCchH----------HHHHHHHHHHHHHHHHhCEEEEEEcCCCc
Confidence 4678999999999854 23466788899999999999999977655
No 41
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.73 E-value=44 Score=31.04 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=39.9
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
+.+.++|+..||..+.+-|..+|-.+.+-|..+...|+. |.|++
T Consensus 87 ~~i~~~l~~~gi~~i~~~g~EADDiIatla~~~~~~g~~-v~IvS 130 (887)
T TIGR00593 87 PLIKELLDALGIPILEVEGYEADDVIATLAKQAEKEGYE-VRIIS 130 (887)
T ss_pred HHHHHHHHHCCCcEEeeCCccHHHHHHHHHHHHHhCCCc-EEEEE
Confidence 556788889999999999999999999989999999999 99887
No 42
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=43.52 E-value=77 Score=22.89 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=34.4
Q ss_pred CChHHHHHHCCCCEEEEeecc--CCHhHHHHHHHHHHCCCCeEEEec
Q 030598 116 THLNSFLRTAGIDSLVIVGVQ--TPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~--t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
..|..+|.+++..+|+++|=. .+.........+.+.|-+ |.++.
T Consensus 14 ~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~-v~~~~ 59 (181)
T PF08659_consen 14 QSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGAR-VEYVQ 59 (181)
T ss_dssp HHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-E-EEEEE
T ss_pred HHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCc-eeeec
Confidence 467889999999999999988 466777788888888888 87775
No 43
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=42.24 E-value=31 Score=26.71 Aligned_cols=102 Identities=11% Similarity=0.077 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCCCccccCCCCCCCCeEEeCCCCCCCCC
Q 030598 36 VPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFA 115 (174)
Q Consensus 36 ~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~ 115 (174)
.+...+|.+.+++.|+..+.+..+. .+.++..++... .+.-.+.+. .+
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stpfd~---------------------------~s~d~l~~~~~~----~~KIaS~dl-~n 102 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTPFDE---------------------------ESVDFLEELGVP----AYKIASGDL-TN 102 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SH---------------------------HHHHHHHHHT-S----EEEE-GGGT-T-
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCH---------------------------HHHHHHHHcCCC----EEEeccccc-cC
Confidence 5667788999999999888774321 112333334211 112122222 36
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCChhh
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEI 170 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~~ 170 (174)
-+|.+++.+.|..-|+=+|++|-.=|..++.-..+.|-. -.++-=|+++++...
T Consensus 103 ~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~-~l~llHC~s~YP~~~ 156 (241)
T PF03102_consen 103 LPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNE-DLVLLHCVSSYPTPP 156 (241)
T ss_dssp HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT---EEEEEE-SSSS--G
T ss_pred HHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCC-CEEEEecCCCCCCCh
Confidence 789999999999999999999988888877777677877 778888998876443
No 44
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=41.13 E-value=1.3e+02 Score=24.51 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCCCccccCCCCCCCCeEEeCCCCCCCCC
Q 030598 36 VPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFA 115 (174)
Q Consensus 36 ~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~ 115 (174)
.+....|.+.+++.|++++-+..+.. . .++..++.. + .+.-...+. .+
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd~~--s-------------------------vd~l~~~~v---~-~~KIaS~~~-~n 122 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFDLE--S-------------------------ADFLEDLGV---P-RFKIPSGEI-TN 122 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCCHH--H-------------------------HHHHHhcCC---C-EEEECcccc-cC
Confidence 46678899999999999887743321 0 112222211 1 122222222 34
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCC
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDY 153 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~ 153 (174)
-+|.+.+.+.|..-|+=+|++|--=+...+....+.|-
T Consensus 123 ~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~ 160 (329)
T TIGR03569 123 APLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGT 160 (329)
T ss_pred HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 56666666666666666677655555555555555554
No 45
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=40.87 E-value=95 Score=20.29 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=35.5
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccc
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDAT 163 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~ 163 (174)
+++++.|....++-++|+.-. ..=...++.++++|.. |++=+-.+
T Consensus 52 ~~~~~ll~~~~~D~V~I~tp~--~~h~~~~~~~l~~g~~-v~~EKP~~ 96 (120)
T PF01408_consen 52 TDLEELLADEDVDAVIIATPP--SSHAEIAKKALEAGKH-VLVEKPLA 96 (120)
T ss_dssp SSHHHHHHHTTESEEEEESSG--GGHHHHHHHHHHTTSE-EEEESSSS
T ss_pred hHHHHHHHhhcCCEEEEecCC--cchHHHHHHHHHcCCE-EEEEcCCc
Confidence 569999999999999998766 4456888999999998 76544433
No 46
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=40.85 E-value=78 Score=20.05 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=23.4
Q ss_pred CCCCEEEEeeccCCHhHHHHHHHHHHCCCC
Q 030598 125 AGIDSLVIVGVQTPNCIRQTVFDAVELDYK 154 (174)
Q Consensus 125 ~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~ 154 (174)
.|.++++|.|-+|.+.--+..-.|+..|-+
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~ 66 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGAD 66 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--E
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCC
Confidence 678999999999999999999889877755
No 47
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=40.81 E-value=43 Score=27.50 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccC
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHD 61 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~ 61 (174)
+..+++++|-|++|-. -.....+...++.||+.|+-++.++..++
T Consensus 72 e~~a~a~vDg~~g~G~----------~a~~~Am~~aiekAr~~Gi~~v~v~ns~H 116 (349)
T TIGR03175 72 TGPCTAIFHGDNGAGQ----------VAAKMAMEHAIEIAKKSGVAVVGISRMSH 116 (349)
T ss_pred ecCcEEEEECCCCchH----------HHHHHHHHHHHHHHHHhCEEEEEecCCCc
Confidence 4568999999999854 23466788899999999999999876554
No 48
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=40.77 E-value=85 Score=25.35 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=30.1
Q ss_pred HHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEeccc
Q 030598 120 SFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDA 162 (174)
Q Consensus 120 ~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da 162 (174)
...+++|+++|+-+|-++..--.++|..+..+|++ ++|+.+-
T Consensus 59 ~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~-~~iv~~~ 100 (337)
T TIGR01274 59 PDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMK-CVLVQEN 100 (337)
T ss_pred HHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCc-EEEEecc
Confidence 33456899888887655545556778888888999 7777654
No 49
>PRK05973 replicative DNA helicase; Provisional
Probab=39.86 E-value=59 Score=25.11 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=30.8
Q ss_pred eEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecc
Q 030598 9 TALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 9 ~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
.-+||||.-..+... . ..+++...+..|...+++.|++|+.+..-
T Consensus 148 ~~lVVIDsLq~l~~~-----~-~~~el~~~~~~Lk~~Ak~~gitvIl~sQl 192 (237)
T PRK05973 148 GTLVVIDYLQLLDQR-----R-EKPDLSVQVRALKSFARERGLIIVFISQI 192 (237)
T ss_pred CCEEEEEcHHHHhhc-----c-cchhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 458999987766431 1 12334455566888899999999999643
No 50
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=39.22 E-value=64 Score=21.89 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=25.4
Q ss_pred CCCCeEEeCCCCCCCCC------CChHHHHHHCCCCEEEEeecc
Q 030598 99 KEGDYKVVKMRFSAFFA------THLNSFLRTAGIDSLVIVGVQ 136 (174)
Q Consensus 99 ~~~~~v~~K~~~s~f~~------~~l~~~L~~~gi~~lii~G~~ 136 (174)
.++|.++.++--+.... ..|+..+...|+++|+|+|=.
T Consensus 24 ~~Gd~fv~Rn~Gn~v~~~~~~~~~sl~~av~~l~v~~ivV~gHt 67 (119)
T cd00382 24 GPGDLFVVRNAGNLVPPYDLDVLASLEYAVEVLGVKHIIVCGHT 67 (119)
T ss_pred CCCCEEEEeccCCcCCCCcccHHHHHHHHHHhhCCCEEEEEccC
Confidence 35777766653333322 356666778999999999964
No 51
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=38.67 E-value=68 Score=26.28 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=30.4
Q ss_pred hHHHHHHCCCCEEEEee-ccCCHhHHHHHHHHH-HCCCCeEEEec
Q 030598 118 LNSFLRTAGIDSLVIVG-VQTPNCIRQTVFDAV-ELDYKSITIIV 160 (174)
Q Consensus 118 l~~~L~~~gi~~lii~G-~~t~~CV~~Ta~~a~-~~G~~~v~vv~ 160 (174)
.+..|+..+.++|+|+| ++.|-........+. .+|++ +++..
T Consensus 253 t~rAl~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~-~~~p~ 296 (342)
T COG0533 253 TERALKHTGKKELVIAGGVAANSRLREMLEEMCKERGAE-VYIPP 296 (342)
T ss_pred HHHHHHHhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCE-EEcCC
Confidence 44567778999998875 666777777666666 78888 76654
No 52
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=38.25 E-value=88 Score=24.50 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=41.6
Q ss_pred CCCeEEeCCCCCCCCCCChHHHHHHCCC-CEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccC
Q 030598 100 EGDYKVVKMRFSAFFATHLNSFLRTAGI-DSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAA 165 (174)
Q Consensus 100 ~~~~v~~K~~~s~f~~~~l~~~L~~~gi-~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~ 165 (174)
.++.+++ || .++-++.+|.+.+- .+|+++--.-..==..+|..+.+.|.. |+++.|+..+
T Consensus 86 ~~dvILT---~s--~S~~v~~~l~~~~~~~~V~v~ESrP~~eG~~~a~~L~~~GI~-vtli~Dsa~~ 146 (253)
T PRK06372 86 NDSVIGT---IS--SSQVLKAFISSSEKIKSVYILESRPMLEGIDMAKLLVKSGID-VVLLTDASMC 146 (253)
T ss_pred CCCEEEE---eC--CcHHHHHHHHhcCCCCEEEEecCCCchHHHHHHHHHHHCCCC-EEEEehhHHH
Confidence 3566665 33 24667777766554 588887654432225899999999999 9999998654
No 53
>PLN02869 fatty aldehyde decarbonylase
Probab=37.00 E-value=2.7e+02 Score=24.88 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=21.9
Q ss_pred CCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEE
Q 030598 125 AGIDSLVIVGVQTPNCIRQTVFDAVELDYKSIT 157 (174)
Q Consensus 125 ~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~ 157 (174)
.|.++|+++|-.+-. -.+.|+.+.++|.+ +.
T Consensus 446 ~~~~~vfl~G~~sK~-~raia~~lc~r~i~-~~ 476 (620)
T PLN02869 446 KGTTQVLFRGNLSKV-AYFIASALCQRGIQ-VA 476 (620)
T ss_pred CCCceEEEecCccHH-HHHHHHHHHhcCCe-Ee
Confidence 678888888865533 34777778888877 53
No 54
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=36.72 E-value=1.2e+02 Score=22.05 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=27.2
Q ss_pred HHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 122 LRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 122 L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
+-+..++.++|+--.+|++-+... +.+.|-+ |+++.
T Consensus 101 ~~~~~iD~~vLvSgD~DF~~Lv~~--lre~G~~-V~v~g 136 (160)
T TIGR00288 101 IYNPNIDAVALVTRDADFLPVINK--AKENGKE-TIVIG 136 (160)
T ss_pred hccCCCCEEEEEeccHhHHHHHHH--HHHCCCE-EEEEe
Confidence 334678899998888888877554 4566999 98887
No 55
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=36.35 E-value=63 Score=26.24 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=35.1
Q ss_pred HHHHHCCCCEEEEeec--------------cCCHhHHHHHHHHHHCCCCeEEEecccccC-CChhhh
Q 030598 120 SFLRTAGIDSLVIVGV--------------QTPNCIRQTVFDAVELDYKSITIIVDATAA-ATPEIH 171 (174)
Q Consensus 120 ~~L~~~gi~~lii~G~--------------~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~-~~~~~h 171 (174)
+.+.+.||+.|+|.|+ ..|..|-.+++...+.-=+ +.|+.|-|-. ++..-|
T Consensus 64 ~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pd-l~vi~Dvclc~YT~hGH 129 (324)
T PF00490_consen 64 EEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPD-LLVITDVCLCEYTSHGH 129 (324)
T ss_dssp HHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTT-SEEEEEE-STTTBTSSS
T ss_pred HHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCC-cEEEEecccccccCCCc
Confidence 3455699999999999 5677788888877776557 9999998854 344333
No 56
>PLN00105 malate/L-lactate dehydrogenase; Provisional
Probab=36.26 E-value=61 Score=26.38 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=35.4
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEec-ccC
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVR-EHD 61 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~-~~~ 61 (174)
++.+++++|-+++|-. -.....+...++.||+.|+-++.++. .++
T Consensus 61 ~~~a~a~vDg~~g~G~----------~~~~~am~~aiekAr~~Gi~~v~vrn~S~H 106 (330)
T PLN00105 61 ETKTSAAVDGNKNAGM----------LVLHHAMDMAIDKAKTHGVGIVGTCNTSTS 106 (330)
T ss_pred cCCcEEEEECCCCccH----------HHHHHHHHHHHHHHHHhCEEEEEEeCCcCC
Confidence 3568889999998854 23466788899999999999999987 544
No 57
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=35.23 E-value=61 Score=26.63 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=35.8
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCC
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDP 62 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~ 62 (174)
+..+++++|-+++|-. -.....+...++.||+.|+-++.++..++-
T Consensus 72 ~~~a~a~vDg~~g~G~----------~a~~~Am~~aiekA~~~Gi~~v~vrnS~H~ 117 (349)
T PRK15025 72 TGPCSAILHADNAAGQ----------VAAKMGMEHAIETAKQNGVAVVGISRMGHS 117 (349)
T ss_pred ecCcEEEEECCCCchH----------HHHHHHHHHHHHHHHHhCEEEEEEeCCCcc
Confidence 3468889999998854 234667888999999999999999876653
No 58
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.15 E-value=60 Score=28.06 Aligned_cols=37 Identities=5% Similarity=0.196 Sum_probs=28.0
Q ss_pred CCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec--ccccC
Q 030598 126 GIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV--DATAA 165 (174)
Q Consensus 126 gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~--Da~~~ 165 (174)
.-.+|||.|- -..=+++|+.+.+.|++ |.|++ |.+++
T Consensus 14 ~~~~VIVIGA--GiaGLsAArqL~~~G~~-V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGA--GLAGLSAARQLQDFGFD-VLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECC--cHHHHHHHHHHHHcCCc-eEEEeccCCcCc
Confidence 3457888873 45668999999999999 99885 44443
No 59
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=34.66 E-value=1.2e+02 Score=23.14 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=33.3
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecc
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
.+.-+|+||.-.-.-.+.+ .......+..-..+|-+.|++.++|||.+.+-
T Consensus 129 ~~~~~v~IDyl~ll~~~~~--~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 129 KKVDVVFIDYLQLLKSEDS--SDNRRQEIGEISRELKALAKELNIPVIALSQL 179 (259)
T ss_dssp TTEEEEEEEEGGGSBTSCS--SSCCHHHHHHHHHHHHHHHHHHTSEEEEEEEB
T ss_pred cCCCEEEechHHHhcCCCC--CCCHHHHHHHHHHHHHHHHHHcCCeEEEcccc
Confidence 3556899998877655321 11122344455666777899999999998653
No 60
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=34.51 E-value=21 Score=24.62 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=26.1
Q ss_pred cccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCC
Q 030598 92 LVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGID 128 (174)
Q Consensus 92 l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~ 128 (174)
|.+.+.|...-+.+.+...+.| +..|+..||.+|.-
T Consensus 16 L~~~ypPA~Tt~~L~q~~~d~F-g~aL~~~LR~~GYa 51 (121)
T PF07283_consen 16 LAEQYPPAKTTFELKQKDPDPF-GQALENALRAKGYA 51 (121)
T ss_pred HHHhcCCCccEEEEEcCCCChH-HHHHHHHHHhcCcE
Confidence 4444555555566767778888 79999999999953
No 61
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=34.44 E-value=65 Score=23.87 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=30.1
Q ss_pred eEEEEEcccccccCCCCccc---cCCccchhHHHHHHHHHHHHcCCeEEEEecc
Q 030598 9 TALLVIDMQNDFILDDGLMR---VDGGKAIVPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 9 ~aLlviD~Q~~f~~~~g~~~---~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
.-+||||-...+........ ......+..-+..|...+++.+++|+++...
T Consensus 104 ~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 104 VDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred CcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 56899998887753110000 0001123333455667789999999999654
No 62
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=34.41 E-value=76 Score=30.17 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=30.7
Q ss_pred CCCEEEEeec---------cCCHhHHHHHHHHHHCCCCeEEEecccc
Q 030598 126 GIDSLVIVGV---------QTPNCIRQTVFDAVELDYKSITIIVDAT 163 (174)
Q Consensus 126 gi~~lii~G~---------~t~~CV~~Ta~~a~~~G~~~v~vv~Da~ 163 (174)
+-++|+|.|- ..|+|+...++.+.++||+ |+++...-
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~-vI~vn~np 599 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYE-TIMINNNP 599 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCE-EEEEeCCc
Confidence 5678888886 5689999999999999999 88776543
No 63
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=34.32 E-value=1.3e+02 Score=23.75 Aligned_cols=43 Identities=28% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccC
Q 030598 122 LRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAA 165 (174)
Q Consensus 122 L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~ 165 (174)
.+++|.++|+-+|-++..--.+.|..+..+|++ ++++-+...+
T Consensus 47 a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~-~~i~v~~~~~ 89 (307)
T cd06449 47 ALAKGADTLVTVGGIQSNHTRQVAAVAAKLGLK-CVLVQENWVP 89 (307)
T ss_pred HHHcCCCEEEECCCchhHHHHHHHHHHHHcCCe-EEEEecCCCC
Confidence 345778888777654444455677777788888 7777665443
No 64
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=33.66 E-value=49 Score=22.58 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=34.2
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccC
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHD 61 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~ 61 (174)
.+..+||||--..+.+..............+.+.++.+.+++.+++++++.+...
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 3456888886666654211000011234567788888888889999999965443
No 65
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=32.88 E-value=2.3e+02 Score=23.83 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=39.0
Q ss_pred ChHHHHHHCCCCEEEEeeccCC--HhHHHHHHHHHHCCCCeEEEecccccCCC
Q 030598 117 HLNSFLRTAGIDSLVIVGVQTP--NCIRQTVFDAVELDYKSITIIVDATAAAT 167 (174)
Q Consensus 117 ~l~~~L~~~gi~~lii~G~~t~--~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~ 167 (174)
-|..+|++.|. +++..|+..| .-+..+...|.+. ++ +.|.+-+++.-+
T Consensus 207 ~l~a~l~~~G~-e~~~~giv~Dd~~~l~~~i~~a~~~-~D-viItsGG~SvG~ 256 (404)
T COG0303 207 MLAALLERAGG-EVVDLGIVPDDPEALREAIEKALSE-AD-VIITSGGVSVGD 256 (404)
T ss_pred HHHHHHHHcCC-ceeeccccCCCHHHHHHHHHHhhhc-CC-EEEEeCCccCcc
Confidence 58889999998 7888888888 6777888888876 89 999988877654
No 66
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=32.07 E-value=1e+02 Score=25.36 Aligned_cols=46 Identities=30% Similarity=0.292 Sum_probs=36.2
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCC
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDP 62 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~ 62 (174)
...+++++|-+++|-. ......+..+++.||+.|+-++.++..++-
T Consensus 75 ~~~a~~~iDa~~g~G~----------~a~~~am~~aie~Ak~~Gia~vav~ns~H~ 120 (349)
T COG2055 75 EAPAVAVLDADGGFGQ----------VAAKKAMELAIEKAKQHGIAAVAVRNSNHF 120 (349)
T ss_pred ecCcEEEEeCCCCcch----------HHHHHHHHHHHHHHHHhCeeEEEEecCCcc
Confidence 4568899999999866 235667888999999999999998765543
No 67
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=31.89 E-value=1.7e+02 Score=21.76 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=31.6
Q ss_pred CCChHHHHH---HCCCCEEEEeeccCC-----HhHHHHHHHHHHCCCCeEEEeccc
Q 030598 115 ATHLNSFLR---TAGIDSLVIVGVQTP-----NCIRQTVFDAVELDYKSITIIVDA 162 (174)
Q Consensus 115 ~~~l~~~L~---~~gi~~lii~G~~t~-----~CV~~Ta~~a~~~G~~~v~vv~Da 162 (174)
.|+++..|+ +++.++|+|.|.... .+.+.++......+.+ ++++.+-
T Consensus 72 ~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L~~~~~~~~~-i~l~d~~ 126 (203)
T TIGR01378 72 TTDLELALKYALERGADEITILGATGGRLDHTLANLNLLLEYAKRGIK-VRLIDEQ 126 (203)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCe-EEEEcCC
Confidence 477776665 578999999997543 2334455555566788 8777654
No 68
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=31.44 E-value=90 Score=23.43 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=30.7
Q ss_pred CeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 8 NTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 8 ~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
+.-+||||.-..+.... ........+..-+.+|-+.|++.+++++.+.+
T Consensus 123 ~~~~vvID~l~~l~~~~--~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q 171 (242)
T cd00984 123 GLGLIVIDYLQLMSGSK--KKGNRQQEVAEISRSLKLLAKELNVPVIALSQ 171 (242)
T ss_pred CCCEEEEcCchhcCCCC--CCCCHHHHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 56799999877665421 01111223344455666678899999999864
No 69
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=31.42 E-value=2.6e+02 Score=22.91 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEecc
Q 030598 37 PNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 37 ~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
..+.++++.+++.|...+.++.+
T Consensus 131 ~~~~~l~~ra~~ag~~alvltvD 153 (344)
T cd02922 131 TKTEELLKRAEKLGAKAIFLTVD 153 (344)
T ss_pred HHHHHHHHHHHHcCCCEEEEECC
Confidence 66788999999999988877544
No 70
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=31.31 E-value=98 Score=20.58 Aligned_cols=27 Identities=4% Similarity=0.176 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHHHcCCeEEEEecc
Q 030598 33 KAIVPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 33 ~~~~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
..--+.+.+.++.+|++|.+||.++..
T Consensus 57 sG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 57 SGETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334577888999999999999998643
No 71
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=31.31 E-value=81 Score=25.15 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=29.9
Q ss_pred HHHHCCCCEEEEeeccCCHhHHHHH-HHHH-HCCCCeEEEecc
Q 030598 121 FLRTAGIDSLVIVGVQTPNCIRQTV-FDAV-ELDYKSITIIVD 161 (174)
Q Consensus 121 ~L~~~gi~~lii~G~~t~~CV~~Ta-~~a~-~~G~~~v~vv~D 161 (174)
++++.|+++|+++|-..-.|++... .... ++|++ +++..-
T Consensus 253 ~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~-v~~~~~ 294 (305)
T TIGR00329 253 ALKDTGPKELVLVGGVSANKRLREMLETLCQELNVE-FYYPPL 294 (305)
T ss_pred HHHHcCCCEEEEECCHHHHHHHHHHHHHHHHHCCCE-EECCCC
Confidence 4445799999999999988888654 3333 77899 877665
No 72
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=30.95 E-value=1.5e+02 Score=23.92 Aligned_cols=48 Identities=10% Similarity=0.232 Sum_probs=32.1
Q ss_pred CCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEeccc
Q 030598 115 ATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDA 162 (174)
Q Consensus 115 ~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da 162 (174)
+..+.+++++.|++.|+-.|-..+-.+..-+....+.+.+.|+|+.+.
T Consensus 105 g~g~~~lf~~~Gv~~vi~ggqt~nPS~~dl~~Ai~~~~a~~VivLPNn 152 (313)
T PF13684_consen 105 GEGLAELFRSLGVDVVISGGQTMNPSTEDLLNAIEKVGADEVIVLPNN 152 (313)
T ss_pred CccHHHHHHhCCCeEEEeCCCCCCCCHHHHHHHHHhCCCCeEEEEeCC
Confidence 677888888888888877776666666644444444465547776654
No 73
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=30.77 E-value=1.6e+02 Score=21.55 Aligned_cols=48 Identities=8% Similarity=0.119 Sum_probs=33.9
Q ss_pred CCCCCeEEeCCCCCCC------CCCChHHHHHHCCCCEEEEeeccCCHhHHHHH
Q 030598 98 IKEGDYKVVKMRFSAF------FATHLNSFLRTAGIDSLVIVGVQTPNCIRQTV 145 (174)
Q Consensus 98 ~~~~~~v~~K~~~s~f------~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta 145 (174)
..++|.++.++--+.. ....|+..+...|+++|+|+|=..-+-|.++.
T Consensus 45 ~~~GdlFViRnaGN~v~~~~~~~~asleyAv~~L~v~~IvV~GHs~CGav~a~~ 98 (182)
T cd00883 45 LLPGEVFVHRNIANLVSPTDLNCLSVLQYAVDVLKVKHIIVCGHYGCGGVKAAL 98 (182)
T ss_pred CCCCCEEEEEeeccccCCCCcchhhhHHHHHHhcCCCEEEEecCCCchHHHHHH
Confidence 3467777766633333 23567777788999999999988777777664
No 74
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=30.74 E-value=59 Score=30.06 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=37.6
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccC
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHD 61 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~ 61 (174)
--..++|||=-.++... ...++.+.|.+|+..+|+.|+++|.++....
T Consensus 638 lP~iviiiDe~adlm~~-------~~k~ve~~i~rLa~~ara~GIHlilatqRps 685 (858)
T COG1674 638 LPYIVIIIDEYADLMMV-------AGKELEELIARLAQKGRAAGIHLILATQRPS 685 (858)
T ss_pred CCeEEEEEcchHHHhhh-------hhHHHHHHHHHHHHhhhhcceEEEEecCCCC
Confidence 34578999988888762 1234899999999999999999999965443
No 75
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=30.08 E-value=1.3e+02 Score=21.12 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=25.6
Q ss_pred hHHHHHHCCCCEEEEeeccC-------CHhHHHHHHHHHHCCCCeEEEecccccCC
Q 030598 118 LNSFLRTAGIDSLVIVGVQT-------PNCIRQTVFDAVELDYKSITIIVDATAAA 166 (174)
Q Consensus 118 l~~~L~~~gi~~lii~G~~t-------~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~ 166 (174)
+.+.+++.. ++|.|+...- .-.+.....+|.++|.+ |.|+-|.....
T Consensus 26 i~~~I~~A~-~~I~i~~~~~~~~~~~~~~~l~~~L~~a~~rGv~-V~il~~~~~~~ 79 (176)
T cd00138 26 LLEAISNAK-KSIYIASFYLSPLITEYGPVILDALLAAARRGVK-VRILVDEWSNT 79 (176)
T ss_pred HHHHHHhhh-eEEEEEEeEecccccccchHHHHHHHHHHHCCCE-EEEEEcccccC
Confidence 333444333 4555555433 33555666677777777 77766655443
No 76
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=29.92 E-value=73 Score=23.06 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=34.0
Q ss_pred eEEEEEcccccccCCCCccccCC---ccchhHHHHHHHHHHHHcCCeEEEEeccc
Q 030598 9 TALLVIDMQNDFILDDGLMRVDG---GKAIVPNVIKAVEIARQHGILVVWVVREH 60 (174)
Q Consensus 9 ~aLlviD~Q~~f~~~~g~~~~~~---~~~~~~~i~~l~~~~r~~~~~vi~~~~~~ 60 (174)
...|+||+-..|.... +.... ...+.+.+.+|++..++.+.++|++..+-
T Consensus 74 ~~~VLIDclt~~~~n~--l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnEv 126 (169)
T cd00544 74 GDVVLIDCLTLWVTNL--LFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEV 126 (169)
T ss_pred CCEEEEEcHhHHHHHh--CCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECCc
Confidence 3479999988877621 11111 12356788889999999999999986543
No 77
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=29.87 E-value=1.8e+02 Score=25.11 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=37.7
Q ss_pred CCCCCeEEEE-EcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCC
Q 030598 4 TKFNNTALLV-IDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRD 66 (174)
Q Consensus 4 ~~~~~~aLlv-iD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~ 66 (174)
.|++|+=|++ +|--.-+++ ...+.+++.|.+..+.-|++|+=|+|++ ++|.+.+
T Consensus 250 GD~dkPklVfFfDEAHLLF~-------da~kall~~ieqvvrLIRSKGVGv~fvT--Q~P~DiP 304 (502)
T PF05872_consen 250 GDLDKPKLVFFFDEAHLLFN-------DAPKALLDKIEQVVRLIRSKGVGVYFVT--QNPTDIP 304 (502)
T ss_pred CCCCCceEEEEEechhhhhc-------CCCHHHHHHHHHHHHHhhccCceEEEEe--CCCCCCC
Confidence 4777766644 564444443 2236688999999999999999999994 5565543
No 78
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=29.83 E-value=1.6e+02 Score=21.34 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=19.3
Q ss_pred CEEEEeeccCCHhHHHHHHHHHHCCCCeEEEe
Q 030598 128 DSLVIVGVQTPNCIRQTVFDAVELDYKSITII 159 (174)
Q Consensus 128 ~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv 159 (174)
++++|.|-..... ...++.+.+.|++ |+++
T Consensus 29 ~~vlVlGgtG~iG-~~~a~~l~~~g~~-V~l~ 58 (194)
T cd01078 29 KTAVVLGGTGPVG-QRAAVLLAREGAR-VVLV 58 (194)
T ss_pred CEEEEECCCCHHH-HHHHHHHHHCCCE-EEEE
Confidence 4677777665544 4556666667777 7765
No 79
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.79 E-value=79 Score=20.64 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=20.1
Q ss_pred cchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 33 KAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 33 ~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
...++...+.++..++.|.++++++
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lT 37 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLT 37 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEE
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEe
Confidence 4467777888888899999999995
No 80
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=29.75 E-value=67 Score=23.86 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=32.0
Q ss_pred CCeEEEEEcccccccCCCCccc--cCCccc-hhHHHHHHHHHHHHcCCeEEEEecc
Q 030598 7 NNTALLVIDMQNDFILDDGLMR--VDGGKA-IVPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~--~~~~~~-~~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
.+..|||||--..+......-. ...... +..-+..|...+++.++.|+++.+.
T Consensus 113 ~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~ 168 (226)
T cd01393 113 GRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQV 168 (226)
T ss_pred CCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEE
Confidence 3567999999888765210000 000112 2333455777789999999999654
No 81
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=29.61 E-value=1.5e+02 Score=23.52 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=28.5
Q ss_pred HHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccc
Q 030598 122 LRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDAT 163 (174)
Q Consensus 122 L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~ 163 (174)
.+++|.++|+-+|-++..--.+.|..+..+|++ ++++-+..
T Consensus 51 a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G~~-~~ivvp~~ 91 (311)
T TIGR01275 51 ALSKGADTVITVGAIQSNHARATALAAKKLGLD-AVLVLREK 91 (311)
T ss_pred HHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCc-eEEEecCC
Confidence 345788888887744444445667777788999 88777764
No 82
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=29.51 E-value=96 Score=24.00 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=28.8
Q ss_pred CCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEeccc
Q 030598 126 GIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDA 162 (174)
Q Consensus 126 gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da 162 (174)
...+|+|.|- ..+....++-|...||+ |+|+.|-
T Consensus 99 p~~~L~IfGa--G~va~~la~la~~lGf~-V~v~D~R 132 (246)
T TIGR02964 99 PAPHVVLFGA--GHVGRALVRALAPLPCR-VTWVDSR 132 (246)
T ss_pred CCCEEEEECC--cHHHHHHHHHHhcCCCE-EEEEeCC
Confidence 4579999994 67788999999999999 9997655
No 83
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.45 E-value=1.2e+02 Score=25.79 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=35.5
Q ss_pred CCCeEEEEEc-ccccccCCCCccccCC-ccchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 6 FNNTALLVID-MQNDFILDDGLMRVDG-GKAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 6 ~~~~aLlviD-~Q~~f~~~~g~~~~~~-~~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
..++.|+||| +|.-|.+.-. ..|+ -.++-+-...|++.|++.+++++.+-+
T Consensus 166 ~~~p~lvVIDSIQT~~s~~~~--SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 166 QEKPDLVVIDSIQTLYSEEIT--SAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred hcCCCEEEEeccceeeccccc--CCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 3577899999 5555554211 1232 355778888999999999999887754
No 84
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=29.38 E-value=99 Score=22.19 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=25.1
Q ss_pred CeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 8 NTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 8 ~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
+.-+||||--..+... ..........-+..|.+.++..|..|+.+.+
T Consensus 141 ~~~lvviD~l~~~~~~----~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H 187 (193)
T PF13481_consen 141 GPDLVVIDPLQSLHDG----DENSNSAVAQLMQELKRLAKEYGVAVILVHH 187 (193)
T ss_dssp --SEEEEE-GGGG--S-----TT-HHHHHHHHHHHHHHHHHH--EEEEEEE
T ss_pred CCcEEEEcCHHHHhcC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 4679999988888772 1111222345556666667888999888843
No 85
>PTZ00445 p36-lilke protein; Provisional
Probab=28.88 E-value=1.4e+02 Score=22.81 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=34.5
Q ss_pred EEEEEcccccccCC-CCccccCC------ccchhHHHHHHHHHHHHcCCeEEEEecc
Q 030598 10 ALLVIDMQNDFILD-DGLMRVDG------GKAIVPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 10 aLlviD~Q~~f~~~-~g~~~~~~------~~~~~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
=+|++|+-|-.+.. .|.+..+. ...+-+....++...++.|++|+.++.+
T Consensus 44 k~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 44 KVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred eEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 46788888887762 23333332 1225677888999999999999998754
No 86
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.77 E-value=2.9e+02 Score=21.64 Aligned_cols=13 Identities=15% Similarity=0.662 Sum_probs=7.3
Q ss_pred HHHHCCCCEEEEe
Q 030598 121 FLRTAGIDSLVIV 133 (174)
Q Consensus 121 ~L~~~gi~~lii~ 133 (174)
++++.|.++|+||
T Consensus 144 ~i~~~Gn~~i~L~ 156 (250)
T PRK13397 144 YLQDTGKSNIILC 156 (250)
T ss_pred HHHHcCCCeEEEE
Confidence 4444555566666
No 87
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.76 E-value=26 Score=22.24 Aligned_cols=36 Identities=8% Similarity=0.255 Sum_probs=24.0
Q ss_pred cccccccCCCCccccCCccchhHHHHHHHHHHHHcCCe
Q 030598 15 DMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGIL 52 (174)
Q Consensus 15 D~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~ 52 (174)
..|..++.......+| +.+++.+.+|.+.++++|++
T Consensus 32 ~~Q~~WLskeRgG~IP--~~V~~sl~kL~~La~~N~v~ 67 (82)
T PF11020_consen 32 QFQATWLSKERGGQIP--EKVMDSLSKLYKLAKENNVS 67 (82)
T ss_pred HHHHHHHHHhhCCCCC--HHHHHHHHHHHHHHHHcCCC
Confidence 3455555532222333 56899999999999998875
No 88
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=28.73 E-value=1.4e+02 Score=22.62 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=28.9
Q ss_pred CEEEEeeccCCHhHH-HHHHHHHHCCCCeEEEec
Q 030598 128 DSLVIVGVQTPNCIR-QTVFDAVELDYKSITIIV 160 (174)
Q Consensus 128 ~~lii~G~~t~~CV~-~Ta~~a~~~G~~~v~vv~ 160 (174)
.+|+|+|+=.++||- .-|..+...|+. +++|-
T Consensus 40 gkv~V~G~GkSG~Igkk~Aa~L~s~G~~-a~fv~ 72 (202)
T COG0794 40 GKVFVTGVGKSGLIGKKFAARLASTGTP-AFFVG 72 (202)
T ss_pred CcEEEEcCChhHHHHHHHHHHHHccCCc-eEEec
Confidence 389999999999998 567888999999 99998
No 89
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=28.44 E-value=1.2e+02 Score=24.60 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=21.8
Q ss_pred HHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 121 FLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 121 ~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
++++.| +--+|+| +||.==.+=|+++.++||+ |.+++
T Consensus 44 ~~~~~g-~WAVVTG-aTDGIGKayA~eLAkrG~n-vvLIs 80 (312)
T KOG1014|consen 44 LKEKLG-SWAVVTG-ATDGIGKAYARELAKRGFN-VVLIS 80 (312)
T ss_pred hHHhcC-CEEEEEC-CCCcchHHHHHHHHHcCCE-EEEEe
Confidence 444455 5566665 3455555666666667776 66654
No 90
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=28.09 E-value=1.2e+02 Score=22.83 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=34.1
Q ss_pred CCCCCeEEeCCCCCCCC------CCChHHHHHHCCCCEEEEeeccCCHhHHHHHH
Q 030598 98 IKEGDYKVVKMRFSAFF------ATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVF 146 (174)
Q Consensus 98 ~~~~~~v~~K~~~s~f~------~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~ 146 (174)
-.++|.++.++--+.-. -..++......|+++|+|||=..-+-|.++..
T Consensus 56 ~~pGdlfV~RNaGniV~~~~~~~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~ 110 (207)
T COG0288 56 LGPGDLFVIRNAGNIVTHPDGSVLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALD 110 (207)
T ss_pred CCCccEEEEeecccccCCCccchhHHHHHHHHHcCCCEEEEecCCCcHHHHhccc
Confidence 44688877776333332 24678888889999999999777666665543
No 91
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=27.98 E-value=2.4e+02 Score=20.91 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=24.6
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHH
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTV 145 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta 145 (174)
..|+..+...+++.|+|||=..-.-|.++.
T Consensus 75 asleyav~~l~v~~ivV~GH~~Cgav~Aa~ 104 (190)
T cd00884 75 AAIEYAVAVLKVEHIVVCGHSDCGGIRALL 104 (190)
T ss_pred hhHHHHHHHhCCCEEEEeCCCcchHHHHHh
Confidence 567778889999999999987777776654
No 92
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=27.98 E-value=1e+02 Score=25.51 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=31.3
Q ss_pred CeEEEEEcccccccCCCCccccCCc-cchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 8 NTALLVIDMQNDFILDDGLMRVDGG-KAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 8 ~~aLlviD~Q~~f~~~~g~~~~~~~-~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
++-+||||--..+..+.-. ..++. .++-+-+.+|.+.+++.+++++.+.+
T Consensus 158 ~~~lVVIDSIq~l~~~~~~-~~~g~~~qvr~~~~~L~~lak~~~itvilvgh 208 (372)
T cd01121 158 KPDLVIIDSIQTVYSSELT-SAPGSVSQVRECTAELMRFAKERNIPIFIVGH 208 (372)
T ss_pred CCcEEEEcchHHhhccccc-cCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 5678999976555432100 11221 23444566788889999999998854
No 93
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=27.88 E-value=72 Score=24.36 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=31.2
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCC
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYK 154 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~ 154 (174)
-+|..+++++|++-++|+|=.-+ ....|...+.+.||.
T Consensus 121 ~~l~~~~~~~G~~V~~iT~R~~~-~r~~T~~nL~~~G~~ 158 (229)
T PF03767_consen 121 LELYNYARSRGVKVFFITGRPES-QREATEKNLKKAGFP 158 (229)
T ss_dssp HHHHHHHHHTTEEEEEEEEEETT-CHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCeEEEEecCCch-hHHHHHHHHHHcCCC
Confidence 47888888899999999997666 777888888888874
No 94
>PRK05755 DNA polymerase I; Provisional
Probab=27.75 E-value=1.3e+02 Score=27.86 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=38.9
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
+.+.+.|+..|+..+..-|+.+|-.+.+-|..+...|+. |.|++
T Consensus 89 ~~~~~~l~~~gi~~~~~~g~EADD~ia~la~~~~~~~~~-~~i~S 132 (880)
T PRK05755 89 PLIRELLRALGIPLLELEGYEADDVIGTLAKQAEAAGYE-VLIVT 132 (880)
T ss_pred HHHHHHHHHCCCCEEeeCCccHHHHHHHHHHHHHhCCCc-EEEEc
Confidence 456678888999999999999999999888888888999 99887
No 95
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=27.60 E-value=1.9e+02 Score=19.85 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=34.3
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEeccc
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDA 162 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da 162 (174)
.++.+.+..++++.++|+.-.+|+.- .+..+.++|.+ |.++.-.
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD~Df~~--~i~~lr~~G~~-V~v~~~~ 132 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGDSDFVP--LVERLRELGKR-VIVVGFE 132 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECCccHHH--HHHHHHHcCCE-EEEEccC
Confidence 45666777779999999988888765 45667777999 9988765
No 96
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=27.35 E-value=2.1e+02 Score=19.58 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=32.1
Q ss_pred CCChHHHH---HHCCCCEEEEeeccCC-----HhHHHHHHHHHHCCCCeEEEec
Q 030598 115 ATHLNSFL---RTAGIDSLVIVGVQTP-----NCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 115 ~~~l~~~L---~~~gi~~lii~G~~t~-----~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
.|+++..| .+.+.++|+|.|.... .+.+.++....+.|.+ ++++.
T Consensus 70 ~TD~e~Al~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l~~~~~~~~~-i~lid 122 (123)
T PF04263_consen 70 YTDLEKALEYAIEQGPDEIIVLGALGGRFDHTLANLNLLYKYKKRGIK-IVLID 122 (123)
T ss_dssp S-HHHHHHHHHHHTTTSEEEEES-SSSSHHHHHHHHHHHHHHHTTTSE-EEEEE
T ss_pred cCHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHHHHHHHHHHcCCe-EEEEe
Confidence 47887766 4579999999998764 4555666777778888 87764
No 97
>PRK03094 hypothetical protein; Provisional
Probab=27.33 E-value=53 Score=20.90 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=7.4
Q ss_pred CChHHHHHHCCCCE
Q 030598 116 THLNSFLRTAGIDS 129 (174)
Q Consensus 116 ~~l~~~L~~~gi~~ 129 (174)
+++.++|+++|.+-
T Consensus 11 s~i~~~L~~~GYeV 24 (80)
T PRK03094 11 TDVQQALKQKGYEV 24 (80)
T ss_pred HHHHHHHHHCCCEE
Confidence 34555666555443
No 98
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=27.22 E-value=79 Score=27.17 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCCCccccCCCCCCCCeEEeCCCCCCCC
Q 030598 35 IVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFF 114 (174)
Q Consensus 35 ~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~ 114 (174)
+.+.+..+|++ .+.|+.+|.+.. -|-.+.++..+. +-|++++-=+.=.+.
T Consensus 13 Ir~GLk~lI~w-~~~g~eiVgtA~--------------------------NG~eAleli~e~---~pDiviTDI~MP~md 62 (475)
T COG4753 13 IREGLKSLIDW-EALGIEVVGTAA--------------------------NGKEALELIQET---QPDIVITDINMPGMD 62 (475)
T ss_pred HHHHHHHhCCh-hhcCCeEEEecc--------------------------cHHHHHHHHHhc---CCCEEEEecCCCCCc
Confidence 45556666654 677888888732 233344555555 456887765555566
Q ss_pred CCChHHHHHH--CCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 115 ATHLNSFLRT--AGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 115 ~~~l~~~L~~--~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
|=+|.+.+++ -.+..|||+|...= .=|+.|+..|.. =+++.
T Consensus 63 GLdLI~~ike~~p~~~~IILSGy~eF----eYak~Am~lGV~-dYLLK 105 (475)
T COG4753 63 GLDLIKAIKEQSPDTEFIILSGYDEF----EYAKKAMKLGVK-DYLLK 105 (475)
T ss_pred HHHHHHHHHHhCCCceEEEEeccchh----HHHHHHHhcCch-hheeC
Confidence 7899999998 56889999998763 456777777765 44443
No 99
>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
Probab=27.04 E-value=84 Score=25.10 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=40.2
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecc
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVD 161 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~D 161 (174)
..+.+.+.+.|+.-+-+-|+..|-++.+=|..+...|+. +.|++.
T Consensus 99 ~~i~~~~~~~~~~~l~~~G~eadd~i~t~A~~a~~~g~~-~~I~S~ 143 (310)
T COG0258 99 PILTELLVALGIPLLELMGIEADDPIETLAQKAYKKGDV-VLIISG 143 (310)
T ss_pred HHHHHHHHHhCcHhhhcCCCCcchhHHHHHHHHHhcCCe-EEEEeC
Confidence 457788888999999999999999999999999999999 998864
No 100
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=26.90 E-value=1.8e+02 Score=19.79 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=33.6
Q ss_pred CChHHHHHHCCCCEEEE--eeccCCHhHHHHHHHHHHCCCC
Q 030598 116 THLNSFLRTAGIDSLVI--VGVQTPNCIRQTVFDAVELDYK 154 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii--~G~~t~~CV~~Ta~~a~~~G~~ 154 (174)
.-|.+.+.+.||..+++ .|...+.-|.+-+..|.+.|.+
T Consensus 78 ~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~ 118 (119)
T PF00861_consen 78 ELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLE 118 (119)
T ss_dssp HHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCC
Confidence 34677788899999988 7888899999999999999986
No 101
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=26.76 E-value=2e+02 Score=23.10 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=28.8
Q ss_pred HHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccC
Q 030598 122 LRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAA 165 (174)
Q Consensus 122 L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~ 165 (174)
.+++|.++|+-+|-++..--.+.|..+..+|++ ++|+-+...+
T Consensus 59 a~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~-~~i~vp~~~~ 101 (331)
T PRK03910 59 ALAQGADTLITAGAIQSNHARQTAAAAAKLGLK-CVLLLENPVP 101 (331)
T ss_pred HHHcCCCEEEEcCcchhHHHHHHHHHHHHhCCc-EEEEEcCCCC
Confidence 335788888866643333345667777788999 8887766544
No 102
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=26.71 E-value=68 Score=24.44 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=17.1
Q ss_pred ChHHHHHHCCCCEEEEeecc
Q 030598 117 HLNSFLRTAGIDSLVIVGVQ 136 (174)
Q Consensus 117 ~l~~~L~~~gi~~lii~G~~ 136 (174)
.+..+|+++|+++++++|-.
T Consensus 3 ~~i~~lk~~gv~~vvmaG~v 22 (214)
T PF06230_consen 3 KIIKFLKREGVTRVVMAGKV 22 (214)
T ss_pred HHHHHHHHcCCCEEEEeecc
Confidence 35678999999999999965
No 103
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=26.55 E-value=2.1e+02 Score=20.25 Aligned_cols=42 Identities=14% Similarity=0.402 Sum_probs=28.9
Q ss_pred ChHHHHHH-CCCCEEEEeeccCCHhHHHHHHHHHHC----CCCeEEEe
Q 030598 117 HLNSFLRT-AGIDSLVIVGVQTPNCIRQTVFDAVEL----DYKSITII 159 (174)
Q Consensus 117 ~l~~~L~~-~gi~~lii~G~~t~~CV~~Ta~~a~~~----G~~~v~vv 159 (174)
++.+.+++ .++++|++.|+=.+.--...+.+++.. +.+ ++++
T Consensus 9 ~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~-i~~~ 55 (158)
T cd05015 9 EFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLR-LHFV 55 (158)
T ss_pred HHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCce-EEEE
Confidence 34555665 589999999999888866666666543 445 6554
No 104
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=26.42 E-value=1.6e+02 Score=22.38 Aligned_cols=41 Identities=27% Similarity=0.458 Sum_probs=31.3
Q ss_pred eEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 9 TALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 9 ~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
.=||++|+=--+++.. ..+-+...+.++.+++.|++++.++
T Consensus 3 ~kli~~DlDGTLl~~~--------~~i~~~~~~al~~~~~~g~~v~iaT 43 (264)
T COG0561 3 IKLLAFDLDGTLLDSN--------KTISPETKEALARLREKGVKVVLAT 43 (264)
T ss_pred eeEEEEcCCCCccCCC--------CccCHHHHHHHHHHHHCCCEEEEEC
Confidence 3478888877776632 2377888888889999999999885
No 105
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.37 E-value=1.2e+02 Score=18.43 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEe
Q 030598 35 IVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 35 ~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
.-+.+.++++.++++|.++|..+
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 59 RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEe
Confidence 34668888999999999998875
No 106
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=26.36 E-value=27 Score=24.86 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=26.9
Q ss_pred cccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEE
Q 030598 92 LVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSL 130 (174)
Q Consensus 92 l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~l 130 (174)
|.+.+.|...-+.+.|.. |.| +.-|+..||..|.--+
T Consensus 50 Lae~~pPa~tt~~l~q~~-d~F-g~aL~~aLr~~GYaVv 86 (145)
T PRK13835 50 LAEQIGPGTTTIKLKKDT-SPF-GQALEAALKGWGYAVV 86 (145)
T ss_pred HHHhcCCCceEEEEeecC-cHH-HHHHHHHHHhcCeEEe
Confidence 445555655556666666 888 7999999999996555
No 107
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=26.17 E-value=1.3e+02 Score=23.92 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=28.5
Q ss_pred ChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCC
Q 030598 117 HLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYK 154 (174)
Q Consensus 117 ~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~ 154 (174)
.|-.+|+++|++-++|+|=. +.+-..|...+.+.||.
T Consensus 152 ~ly~~l~~~G~kIf~VSgR~-e~~r~aT~~NL~kaGy~ 188 (275)
T TIGR01680 152 KNYNKLVSLGFKIIFLSGRL-KDKQAVTEANLKKAGYH 188 (275)
T ss_pred HHHHHHHHCCCEEEEEeCCc-hhHHHHHHHHHHHcCCC
Confidence 56777888888888888874 55677788888888885
No 108
>COG3356 Predicted membrane protein [Function unknown]
Probab=26.15 E-value=1.2e+02 Score=26.58 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=18.8
Q ss_pred ChHHHHHHCCCCEEEEeeccCCHhHH
Q 030598 117 HLNSFLRTAGIDSLVIVGVQTPNCIR 142 (174)
Q Consensus 117 ~l~~~L~~~gi~~lii~G~~t~~CV~ 142 (174)
.+.+.+++. +++++|+=-.++.|--
T Consensus 463 ~v~~~v~~l-v~~veV~TTDtH~vn~ 487 (578)
T COG3356 463 EVRKAVRDL-VSEVEVVTTDTHYVNG 487 (578)
T ss_pred HHHHHHHhh-hcEEEEEecCCceecc
Confidence 344455556 9999999999998864
No 109
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=26.03 E-value=1.5e+02 Score=19.05 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=28.1
Q ss_pred EEEEEcc-cccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 10 ALLVIDM-QNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 10 aLlviD~-Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
-.|++|+ .-.|++ ..-+..+..+.+.+++.|..++++.
T Consensus 42 ~~vvlDls~v~~iD----------ssg~~~l~~~~~~~~~~g~~l~l~g 80 (109)
T cd07041 42 RGVIIDLTGVPVID----------SAVARHLLRLARALRLLGARTILTG 80 (109)
T ss_pred CEEEEECCCCchhc----------HHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3688888 445555 2246778888888899999999884
No 110
>PRK14031 glutamate dehydrogenase; Provisional
Probab=25.81 E-value=2.2e+02 Score=24.32 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=33.7
Q ss_pred hHHHHHHCCC----CEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccC
Q 030598 118 LNSFLRTAGI----DSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAA 165 (174)
Q Consensus 118 l~~~L~~~gi----~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~ 165 (174)
+.+.++..|. +++.|.|+ -..=..+|+-+.+.|.+ |+.|+|..++
T Consensus 215 ~~~~~~~~g~~l~g~rVaVQGf--GNVG~~aA~~L~e~GAk-VVaVSD~~G~ 263 (444)
T PRK14031 215 LMEMLKTKGTDLKGKVCLVSGS--GNVAQYTAEKVLELGGK-VVTMSDSDGY 263 (444)
T ss_pred HHHHHHhcCCCcCCCEEEEECC--CHHHHHHHHHHHHCCCE-EEEEECCCCe
Confidence 5566666664 59999998 22223788889999999 9999996554
No 111
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.71 E-value=1.1e+02 Score=21.04 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=19.2
Q ss_pred cchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 33 KAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 33 ~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
..--+++.+.++.||++|.+||..+
T Consensus 113 SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 113 SGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp SS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3345889999999999999999763
No 112
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=25.51 E-value=1.2e+02 Score=24.38 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=25.9
Q ss_pred HHHCCCCEEEEeeccCCHhHHHH-HHHHH-HCCCCeEEEecc
Q 030598 122 LRTAGIDSLVIVGVQTPNCIRQT-VFDAV-ELDYKSITIIVD 161 (174)
Q Consensus 122 L~~~gi~~lii~G~~t~~CV~~T-a~~a~-~~G~~~v~vv~D 161 (174)
++..|+++|+++|-..-.|++-. ....+ +.|++ |++..-
T Consensus 238 ~~~~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~-v~~~~~ 278 (322)
T TIGR03722 238 LAHTGKKEVLLVGGVAANRRLREMLELMAEDRGAK-FYVPPP 278 (322)
T ss_pred HHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCE-EEcCCC
Confidence 33468999999976666666644 44433 67998 886554
No 113
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=25.30 E-value=81 Score=18.90 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCCeEEEeccc
Q 030598 141 IRQTVFDAVELDYKSITIIVDA 162 (174)
Q Consensus 141 V~~Ta~~a~~~G~~~v~vv~Da 162 (174)
=+++|..+.+.|++ |.|++-.
T Consensus 8 Gl~aA~~L~~~g~~-v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYR-VTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSE-EEEEESS
T ss_pred HHHHHHHHHHCCCc-EEEEecC
Confidence 36778888889999 9998754
No 114
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=25.26 E-value=1.3e+02 Score=22.74 Aligned_cols=13 Identities=23% Similarity=0.186 Sum_probs=6.7
Q ss_pred CCChHHHHHHCCC
Q 030598 115 ATHLNSFLRTAGI 127 (174)
Q Consensus 115 ~~~l~~~L~~~gi 127 (174)
+..+...|.+.|.
T Consensus 28 G~~ia~~l~~~G~ 40 (258)
T PRK06935 28 GQGYAVALAKAGA 40 (258)
T ss_pred HHHHHHHHHHCCC
Confidence 4455555555554
No 115
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=25.22 E-value=1.8e+02 Score=22.24 Aligned_cols=41 Identities=37% Similarity=0.588 Sum_probs=30.2
Q ss_pred eEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 9 TALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 9 ~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
.-||++|+=--+++.. ..+-+...+.++.++++|+.++.++
T Consensus 3 ~kli~~DlDGTLl~~~--------~~i~~~~~~ai~~l~~~G~~~~iaT 43 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD--------HTISPAVKQAIAAARAKGVNVVLTT 43 (270)
T ss_pred eEEEEEecCCcCcCCC--------CccCHHHHHHHHHHHHCCCEEEEec
Confidence 3488888877777632 2355666778888899999998884
No 116
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=25.18 E-value=1.3e+02 Score=19.81 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHHcCCeEEEEec
Q 030598 34 AIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 34 ~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
.--+.+.+.++.++++|.++|.++.
T Consensus 57 G~t~e~~~~~~~a~~~g~~vi~iT~ 81 (126)
T cd05008 57 GETADTLAALRLAKEKGAKTVAITN 81 (126)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 3456688899999999999998864
No 117
>COG1647 Esterase/lipase [General function prediction only]
Probab=25.13 E-value=69 Score=24.78 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=21.7
Q ss_pred HHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCC
Q 030598 120 SFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELD 152 (174)
Q Consensus 120 ~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G 152 (174)
.+|++.|.++|.|+|++.-+ | .|..=|...-
T Consensus 77 ~~L~~~gy~eI~v~GlSmGG-v-~alkla~~~p 107 (243)
T COG1647 77 RDLKEAGYDEIAVVGLSMGG-V-FALKLAYHYP 107 (243)
T ss_pred HHHHHcCCCeEEEEeecchh-H-HHHHHHhhCC
Confidence 46888999999999998754 2 3444444433
No 118
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=24.94 E-value=1.2e+02 Score=28.72 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=29.3
Q ss_pred CCCEEEEeec---------cCCHhHHHHHHHHHHCCCCeEEEeccc
Q 030598 126 GIDSLVIVGV---------QTPNCIRQTVFDAVELDYKSITIIVDA 162 (174)
Q Consensus 126 gi~~lii~G~---------~t~~CV~~Ta~~a~~~G~~~v~vv~Da 162 (174)
..++|+|.|- .-|+|....++.+.++||+ |+++...
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~-vI~v~~n 597 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYE-TIMINYN 597 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCE-EEEEecC
Confidence 4568888874 4579999999999999999 9888543
No 119
>PRK10976 putative hydrolase; Provisional
Probab=24.91 E-value=1.8e+02 Score=22.12 Aligned_cols=39 Identities=15% Similarity=0.404 Sum_probs=29.2
Q ss_pred EEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 11 LLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 11 LlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
||++|+=--+++.. ..+-+...+.++.++++|++++.++
T Consensus 4 li~~DlDGTLl~~~--------~~is~~~~~ai~~l~~~G~~~~iaT 42 (266)
T PRK10976 4 VVASDLDGTLLSPD--------HTLSPYAKETLKLLTARGIHFVFAT 42 (266)
T ss_pred EEEEeCCCCCcCCC--------CcCCHHHHHHHHHHHHCCCEEEEEc
Confidence 78888877777632 2355666778888999999998885
No 120
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=24.76 E-value=1.4e+02 Score=22.38 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.1
Q ss_pred CCChHHHHHHCCCCEEEEeecc
Q 030598 115 ATHLNSFLRTAGIDSLVIVGVQ 136 (174)
Q Consensus 115 ~~~l~~~L~~~gi~~lii~G~~ 136 (174)
.++|++.|++.|++=|+++|..
T Consensus 76 d~eL~~~l~e~~~d~v~lAG~M 97 (206)
T KOG3076|consen 76 DNELAEVLLELGTDLVCLAGYM 97 (206)
T ss_pred cHHHHHHHHHhCCCEEEehhhH
Confidence 3899999999999999999864
No 121
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=24.69 E-value=77 Score=20.02 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.3
Q ss_pred HHHHHHCCCCEEEEeec
Q 030598 119 NSFLRTAGIDSLVIVGV 135 (174)
Q Consensus 119 ~~~L~~~gi~~lii~G~ 135 (174)
...|+.+||++|-++|-
T Consensus 44 aRkLd~qGI~~V~L~G~ 60 (77)
T PF12404_consen 44 ARKLDGQGIKNVALAGE 60 (77)
T ss_pred HHHHhhCCCceEEEecC
Confidence 34677899999999996
No 122
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=24.62 E-value=3.1e+02 Score=22.78 Aligned_cols=24 Identities=4% Similarity=0.044 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEeccc
Q 030598 37 PNVIKAVEIARQHGILVVWVVREH 60 (174)
Q Consensus 37 ~~i~~l~~~~r~~~~~vi~~~~~~ 60 (174)
+...++++.+++.|...+.++.+.
T Consensus 146 ~~~~~li~RA~~aG~~alvlTvD~ 169 (367)
T TIGR02708 146 GINRDIMDRVKADGAKAIVLTADA 169 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Confidence 446789999999999877776543
No 123
>PHA00012 I assembly protein
Probab=24.57 E-value=1.8e+02 Score=24.01 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecc
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
.+-+|+|||-=..++++. .+. ...-+.+.+.+...|..|+.++++++.
T Consensus 80 p~gsLlVlDEaq~~fp~R-~~~----sk~p~~vie~l~~hRh~G~DvilITQ~ 127 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSR-SWN----DKERQPVIDWFLHARKLGWDIIFIIQD 127 (361)
T ss_pred CCCcEEEEECcccccCCC-CcC----cCCcHHHHHHHHHhccCCceEEEEcCC
Confidence 456788888444444422 111 233444677888899999999999643
No 124
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=24.43 E-value=1.8e+02 Score=23.82 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=31.8
Q ss_pred CCChHHHHHHCCCCEEEEe--------eccCCHhHHHHHHHHHHCCCCeEEEe
Q 030598 115 ATHLNSFLRTAGIDSLVIV--------GVQTPNCIRQTVFDAVELDYKSITII 159 (174)
Q Consensus 115 ~~~l~~~L~~~gi~~lii~--------G~~t~~CV~~Ta~~a~~~G~~~v~vv 159 (174)
..++.++|+++|++.|=|= |...---|..+|+.|.++|++ |.+-
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~-vlld 77 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMK-VLLD 77 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-E-EEEE
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCe-EEEe
Confidence 4689999999999977663 766667788999999999999 7653
No 125
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=24.39 E-value=3.8e+02 Score=22.25 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHcCCeEEEEeccc
Q 030598 36 VPNVIKAVEIARQHGILVVWVVREH 60 (174)
Q Consensus 36 ~~~i~~l~~~~r~~~~~vi~~~~~~ 60 (174)
-+...++++.|++.|...+.++.+.
T Consensus 134 r~~~~~li~RA~~aG~~alvlTvD~ 158 (367)
T PLN02493 134 RNVVEQLVRRAERAGFKAIALTVDT 158 (367)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4567889999999999888776543
No 126
>PRK11823 DNA repair protein RadA; Provisional
Probab=24.28 E-value=1.5e+02 Score=25.19 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=31.7
Q ss_pred CeEEEEEcccccccCCCCccccCCc-cchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 8 NTALLVIDMQNDFILDDGLMRVDGG-KAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 8 ~~aLlviD~Q~~f~~~~g~~~~~~~-~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
+.-+||||--..+....-. ..++. .++..-+..|.+.+++.+++++.+.+
T Consensus 156 ~~~lVVIDSIq~l~~~~~~-~~~g~~~qvr~~~~~L~~~ak~~~itvilv~h 206 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPELE-SAPGSVSQVRECAAELMRLAKQRGIAVFLVGH 206 (446)
T ss_pred CCCEEEEechhhhcccccc-CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 4568999976665542100 11222 23344566788899999999999854
No 127
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=24.26 E-value=1.5e+02 Score=25.16 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=31.3
Q ss_pred CeEEEEEcccccccCCCCccccCCc-cchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 8 NTALLVIDMQNDFILDDGLMRVDGG-KAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 8 ~~aLlviD~Q~~f~~~~g~~~~~~~-~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
+..+||||-...+..+.-. ..++. .++.+-+..|.+.+++.|+.++.+.+
T Consensus 170 ~~~~vVIDSIq~l~~~~~~-~~~g~~~q~r~~~~~L~~~ak~~giTvllt~h 220 (454)
T TIGR00416 170 NPQACVIDSIQTLYSPDIS-SAPGSVSQVRECTAELMRLAKTRGIAIFIVGH 220 (454)
T ss_pred CCcEEEEecchhhcccccc-cCCCCHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 4568999976665442110 11222 22344456788889999999999854
No 128
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=24.15 E-value=2.5e+02 Score=23.20 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=47.5
Q ss_pred CCeEEeCCCCCCCCCCChHHHHHHCCCC------EEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCChhh
Q 030598 101 GDYKVVKMRFSAFFATHLNSFLRTAGID------SLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEI 170 (174)
Q Consensus 101 ~~~v~~K~~~s~f~~~~l~~~L~~~gi~------~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~~ 170 (174)
.|..+..+ |..| ..+..+|++...+ ++.+-=++.+.=+......|.+.|-+ |+|+-+.-+.++++.
T Consensus 9 ~DiLlh~P-Y~sf--~~vv~fl~eAA~DP~V~aIk~TLYR~a~~S~iv~aLi~AA~nGK~-Vtv~vELkARFDEe~ 80 (352)
T PF13090_consen 9 KDILLHHP-YESF--DPVVDFLREAAEDPDVLAIKITLYRVASNSPIVNALIEAAENGKQ-VTVLVELKARFDEEN 80 (352)
T ss_dssp S-EEEECT-TB-T--CHHHHHHHHHCC-TTEEEEEEEESSS-TT-HHHHHHHHHHHTT-E-EEEEESTTSSSTTCC
T ss_pred CCEEEECC-cccc--HHHHHHHHHHhcCCCccEEEEEEEecCCCCHHHHHHHHHHHcCCE-EEEEEEEeccccHHH
Confidence 45555544 5555 4567788886554 56777888999999999999999999 999999999988764
No 129
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.00 E-value=1.5e+02 Score=19.78 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.1
Q ss_pred cchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 33 KAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 33 ~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
..--+.+.+.++.++++|.++|.++.
T Consensus 57 SG~t~~~~~~~~~a~~~g~~vi~iT~ 82 (120)
T cd05710 57 SGNTKETVAAAKFAKEKGATVIGLTD 82 (120)
T ss_pred CCCChHHHHHHHHHHHcCCeEEEEEC
Confidence 33467788899999999999998854
No 130
>PTZ00174 phosphomannomutase; Provisional
Probab=23.94 E-value=2.6e+02 Score=21.22 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=31.0
Q ss_pred CeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 8 NTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 8 ~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
+.-||++|+=--+++.. ..+-+...+.++.+++.|+.++.++
T Consensus 4 ~~klia~DlDGTLL~~~--------~~is~~~~~ai~~l~~~Gi~~viaT 45 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPR--------NPITQEMKDTLAKLKSKGFKIGVVG 45 (247)
T ss_pred CCeEEEEECcCCCcCCC--------CCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 34588999877777632 3355666778888899999888874
No 131
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=23.90 E-value=1.1e+02 Score=19.69 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEe
Q 030598 37 PNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 37 ~~i~~l~~~~r~~~~~vi~~~ 57 (174)
.-+..+...++++++|++|+.
T Consensus 42 ~vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 42 YLMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHHHHHHHHcCCCEEEEC
Confidence 356688888999999999994
No 132
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=23.86 E-value=1.4e+02 Score=16.58 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=20.6
Q ss_pred cchhHHHHHHHHHHHHcCCeEEEEecc
Q 030598 33 KAIVPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 33 ~~~~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
.++-.++.++++.+...+ ||+.++..
T Consensus 5 te~r~~~~~~l~~v~~~~-pv~It~~g 30 (52)
T TIGR01552 5 SEAKNKLGELLKRVRDGE-PVTITKRG 30 (52)
T ss_pred HHHHHHHHHHHHHHHCCC-CEEEEECC
Confidence 456778899999998877 99998653
No 133
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=23.71 E-value=1.5e+02 Score=21.92 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=33.0
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccc
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDAT 163 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~ 163 (174)
.++..+++..++++++|+|.+...-+...+........+ -.|+.++.
T Consensus 84 ~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~-~lvl~~~~ 130 (288)
T TIGR01250 84 DELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLK-GLIISSML 130 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCccccc-eeeEeccc
Confidence 456677788889999999999988877766555444455 44554443
No 134
>PLN00416 carbonate dehydratase
Probab=23.70 E-value=2.8e+02 Score=21.76 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=33.3
Q ss_pred CCCCCeEEeCCCCCCCC----------CCChHHHHHHCCCCEEEEeeccCCHhHHHHH
Q 030598 98 IKEGDYKVVKMRFSAFF----------ATHLNSFLRTAGIDSLVIVGVQTPNCIRQTV 145 (174)
Q Consensus 98 ~~~~~~v~~K~~~s~f~----------~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta 145 (174)
..++|.++.++--+... ...|+..+...|+++|+|||=.--+-|.+..
T Consensus 100 ~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~ 157 (258)
T PLN00416 100 FQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLM 157 (258)
T ss_pred CCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 44688877776333322 1357888888999999999987776665543
No 135
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=23.67 E-value=1.6e+02 Score=20.88 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=31.3
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHh--HHHHHHHHHHCCCCeEEEecc
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNC--IRQTVFDAVELDYKSITIIVD 161 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~C--V~~Ta~~a~~~G~~~v~vv~D 161 (174)
.++.+.|+ ..++|-|+|++-+=- -+-.+..+.+.||+ |+-|--
T Consensus 7 ~~i~~iL~--~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~-ViPVNP 51 (140)
T COG1832 7 EDIAEILK--SAKTIAVVGASDKPDRPSYRVAKYLQQKGYR-VIPVNP 51 (140)
T ss_pred HHHHHHHH--hCceEEEEecCCCCCccHHHHHHHHHHCCCE-EEeeCc
Confidence 45667775 456999999986533 33556788999999 887644
No 136
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=23.66 E-value=1.6e+02 Score=22.16 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=26.3
Q ss_pred EEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 11 LLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 11 LlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
|++.|+-.-+++ . ....+...+.++..+++|++++.++
T Consensus 1 li~~DlDGTLl~-~--------~~~~~~~~~ai~~l~~~G~~~vi~T 38 (225)
T TIGR02461 1 VIFTDLDGTLLP-P--------GYEPGPAREALEELKDLGFPIVFVS 38 (225)
T ss_pred CEEEeCCCCCcC-C--------CCCchHHHHHHHHHHHCCCEEEEEe
Confidence 466777666665 1 1234556778888899999999884
No 137
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=23.65 E-value=1.8e+02 Score=22.05 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=29.2
Q ss_pred EEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 10 aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
-||++|+=--+++.. ..+.++..+.++.++++|+.++.++
T Consensus 4 kli~~DlDGTLl~~~--------~~i~~~~~~ai~~~~~~G~~~~iaT 43 (272)
T PRK10530 4 RVIALDLDGTLLTPK--------KTILPESLEALARAREAGYKVIIVT 43 (272)
T ss_pred cEEEEeCCCceECCC--------CccCHHHHHHHHHHHHCCCEEEEEc
Confidence 378888877777632 2355566778888999999988885
No 138
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=23.58 E-value=39 Score=17.45 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=13.6
Q ss_pred CCCCCCChHHHHHHCCCC
Q 030598 111 SAFFATHLNSFLRTAGID 128 (174)
Q Consensus 111 s~f~~~~l~~~L~~~gi~ 128 (174)
+.+...+|.+.|+..|+.
T Consensus 2 ~~l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 2 AKLKVSELKDELKKRGLS 19 (35)
T ss_pred CcCcHHHHHHHHHHcCCC
Confidence 455667888899888865
No 139
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=23.54 E-value=2.5e+02 Score=22.54 Aligned_cols=46 Identities=7% Similarity=0.067 Sum_probs=27.5
Q ss_pred CChHHHHHHCCCC---EEEEeeccCCHhHHHHHHHHHHCCCCeEEEecc
Q 030598 116 THLNSFLRTAGID---SLVIVGVQTPNCIRQTVFDAVELDYKSITIIVD 161 (174)
Q Consensus 116 ~~l~~~L~~~gi~---~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~D 161 (174)
..|+.+|++.||+ +|||.+-....-....+..+...||++|.++..
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdG 137 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDG 137 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCC
Confidence 5688888888864 777775322221122234566788865777643
No 140
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=23.51 E-value=2.1e+02 Score=23.08 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=27.7
Q ss_pred EEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 11 LLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 11 LlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
||+.|+=--+++.. ...-+.....++..+++|++||.++-
T Consensus 3 LIftDLDGTLLd~~--------~~~~~~a~~aL~~Lk~~GI~vVlaTG 42 (302)
T PRK12702 3 LVLSSLDGSLLDLE--------FNSYGAARQALAALERRSIPLVLYSL 42 (302)
T ss_pred EEEEeCCCCCcCCC--------CcCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 67778777776632 12334456678888899999999853
No 141
>PRK07831 short chain dehydrogenase; Provisional
Probab=23.51 E-value=1.5e+02 Score=22.44 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=12.8
Q ss_pred CCChHHHHHHCCCCEEEEee
Q 030598 115 ATHLNSFLRTAGIDSLVIVG 134 (174)
Q Consensus 115 ~~~l~~~L~~~gi~~lii~G 134 (174)
+..+...|.++|.+ |++++
T Consensus 31 G~~ia~~l~~~G~~-V~~~~ 49 (262)
T PRK07831 31 GSATARRALEEGAR-VVISD 49 (262)
T ss_pred HHHHHHHHHHcCCE-EEEEe
Confidence 56677777777865 65554
No 142
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.46 E-value=70 Score=20.28 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=20.0
Q ss_pred CCChHHHHHHCCCCEEEEeeccC
Q 030598 115 ATHLNSFLRTAGIDSLVIVGVQT 137 (174)
Q Consensus 115 ~~~l~~~L~~~gi~~lii~G~~t 137 (174)
..+...+|+..++++++|.|-..
T Consensus 61 ~~~~~~~l~~~~~~~v~iiGg~~ 83 (92)
T PF04122_consen 61 PSSVKAFLKSLNIKKVYIIGGEG 83 (92)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC
Confidence 37899999999999999999654
No 143
>PRK05443 polyphosphate kinase; Provisional
Probab=23.39 E-value=3.8e+02 Score=24.33 Aligned_cols=66 Identities=23% Similarity=0.326 Sum_probs=48.9
Q ss_pred CCCeEEeCCCCCCCCCCChHHHHHHCCCC------EEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCChh
Q 030598 100 EGDYKVVKMRFSAFFATHLNSFLRTAGID------SLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPE 169 (174)
Q Consensus 100 ~~~~v~~K~~~s~f~~~~l~~~L~~~gi~------~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~ 169 (174)
.+|+.+..+ |..| ..+..+|++...+ ++.+-=++.+-=+..+..+|.++|-+ |+|+-+.-+.++++
T Consensus 338 ~~DiLLh~P-Y~SF--~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~-V~vlve~karfde~ 409 (691)
T PRK05443 338 EKDILLHHP-YESF--DPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQ-VTVLVELKARFDEE 409 (691)
T ss_pred hCCEEEECC-ccCc--hHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCE-EEEEEccCccccHH
Confidence 355555544 5556 5677788887664 44555566778899999999999999 99999988866654
No 144
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.33 E-value=1.5e+02 Score=25.08 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=16.6
Q ss_pred CEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 128 DSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 128 ~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
+++.|+|+-..+. +.|+-+.++|++ |++.-
T Consensus 15 ~~i~v~G~G~sG~--a~a~~L~~~G~~-V~~~D 44 (458)
T PRK01710 15 KKVAVVGIGVSNI--PLIKFLVKLGAK-VTAFD 44 (458)
T ss_pred CeEEEEcccHHHH--HHHHHHHHCCCE-EEEEC
Confidence 4566666555443 555555566665 55554
No 145
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=23.24 E-value=1.4e+02 Score=23.52 Aligned_cols=42 Identities=14% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
++...+++|+.=-... +...++...+.++..+++|.|++|++
T Consensus 6 ~~y~~~l~DlDGvl~~---------G~~~ipga~e~l~~L~~~g~~~iflT 47 (269)
T COG0647 6 DKYDGFLFDLDGVLYR---------GNEAIPGAAEALKRLKAAGKPVIFLT 47 (269)
T ss_pred hhcCEEEEcCcCceEe---------CCccCchHHHHHHHHHHcCCeEEEEe
Confidence 3444577776655554 24556777778888899999999995
No 146
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=23.19 E-value=1.3e+02 Score=24.06 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=29.1
Q ss_pred HHHHCCCCEEEEeeccCCHhHHHHH--HHHHHCCCCeEEEecc
Q 030598 121 FLRTAGIDSLVIVGVQTPNCIRQTV--FDAVELDYKSITIIVD 161 (174)
Q Consensus 121 ~L~~~gi~~lii~G~~t~~CV~~Ta--~~a~~~G~~~v~vv~D 161 (174)
++++.|+++|+++|-..-.|++... ..+.++|++ +++..-
T Consensus 254 ~~~~~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~-v~~~~~ 295 (314)
T TIGR03723 254 ALKKTGLKTLVVAGGVAANSRLRERLEELAEKAGLE-VFIPPL 295 (314)
T ss_pred HHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCE-EECCCC
Confidence 3445789999999988888888554 344467898 877654
No 147
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=23.19 E-value=1.1e+02 Score=23.17 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEecccCCCC
Q 030598 35 IVPNVIKAVEIARQHGILVVWVVREHDPLG 64 (174)
Q Consensus 35 ~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~ 64 (174)
...+..++++.+++.|.|++...+-|.|..
T Consensus 152 ~~~~~~~~~~~~~~~g~piiisSdAh~~~~ 181 (237)
T PRK00912 152 TLSNFRDNLALARKYDFPLVLTSGAMSCYD 181 (237)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCcccc
Confidence 366777899999999999999988887754
No 148
>PLN02979 glycolate oxidase
Probab=23.15 E-value=3.4e+02 Score=22.54 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHcCCeEEEEecc
Q 030598 36 VPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 36 ~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
-+...++++.|++.|...+.++.+
T Consensus 133 r~~~~~ll~RA~~aG~~AlvlTVD 156 (366)
T PLN02979 133 RNVVEQLVRRAERAGFKAIALTVD 156 (366)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEec
Confidence 456788999999999987776544
No 149
>PLN02253 xanthoxin dehydrogenase
Probab=23.01 E-value=1.5e+02 Score=22.69 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=10.8
Q ss_pred CCCCChHHHHHHCCCCEEEEee
Q 030598 113 FFATHLNSFLRTAGIDSLVIVG 134 (174)
Q Consensus 113 f~~~~l~~~L~~~gi~~lii~G 134 (174)
+-+..+...|.++|. +|++++
T Consensus 29 gIG~~la~~l~~~G~-~v~~~~ 49 (280)
T PLN02253 29 GIGESIVRLFHKHGA-KVCIVD 49 (280)
T ss_pred hHHHHHHHHHHHcCC-EEEEEe
Confidence 335556666666664 344444
No 150
>PF10092 DUF2330: Uncharacterized protein conserved in bacteria (DUF2330); InterPro: IPR019283 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.00 E-value=4.3e+02 Score=21.78 Aligned_cols=139 Identities=15% Similarity=0.096 Sum_probs=67.5
Q ss_pred CCCCeEEEEEc-------ccccccCCCCc--cc--cCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCC---hhhh
Q 030598 5 KFNNTALLVID-------MQNDFILDDGL--MR--VDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRD---VELF 70 (174)
Q Consensus 5 ~~~~~aLlviD-------~Q~~f~~~~g~--~~--~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~---~~~~ 70 (174)
+....+||..| ||++|-.+... |- +|..+++.-.=.++++..-+...|-+-...++.|-... ...+
T Consensus 20 ~~~e~vli~~dg~~t~l~m~~~y~G~a~~fA~VVPVP~~~~V~vg~~~lF~~Ld~~TaPrlv~~~~~~pc~~~~~~~~~~ 99 (348)
T PF10092_consen 20 NNAEQVLIARDGGRTVLVMQIDYQGDAEDFAWVVPVPAVPQVKVGDPALFDRLDALTAPRLVEYFDWDPCGESDGFAGGF 99 (348)
T ss_pred ccccEEEEEEcCCEEEEEEEeeccCCccceEEEecCCCccceeccCHHHHHHHHhccCCEeEeeccCCcccccccccccc
Confidence 34556677666 88888775322 22 33433333333445555455555666655554443100 0000
Q ss_pred hhhhcCCCCCCCCCCCCCC--CccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHH
Q 030598 71 RQHLYSTGTVGPTSKGSPG--AELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDA 148 (174)
Q Consensus 71 ~~~~~~~~~~~~~~~g~~g--~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a 148 (174)
. ..+..........| -++..+...-+-|+++-+.. ....|..||+++|.+ ..--...-...-
T Consensus 100 ~----~~~~~~~~~~~~~g~~V~V~~~~~VG~ydi~iLsa~----ds~gL~~WL~~ngY~--------ip~~a~~~L~pY 163 (348)
T PF10092_consen 100 P----SAPGGAAGAGSDSGGGVTVEARERVGPYDITILSAK----DSDGLRTWLRDNGYA--------IPPGAEPILDPY 163 (348)
T ss_pred c----cccccCCCCCCcCCCCceEEEEEeecceEEEEEecC----ChHHHHHHHHHcCCC--------CCccHHHHHHHH
Confidence 0 00000000011111 34444444444455544432 347899999998864 344455555666
Q ss_pred HHCCCCeEEEec
Q 030598 149 VELDYKSITIIV 160 (174)
Q Consensus 149 ~~~G~~~v~vv~ 160 (174)
.+.|++ -++++
T Consensus 164 v~~G~~-Ffa~k 174 (348)
T PF10092_consen 164 VRQGWK-FFAAK 174 (348)
T ss_pred HHcCCE-EEEEE
Confidence 788888 65554
No 151
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=22.97 E-value=1.6e+02 Score=22.62 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=18.4
Q ss_pred hHHHHHHCCC---CEEEEeeccC---CHhH-HHHHH-HHHHCCCCeEEE
Q 030598 118 LNSFLRTAGI---DSLVIVGVQT---PNCI-RQTVF-DAVELDYKSITI 158 (174)
Q Consensus 118 l~~~L~~~gi---~~lii~G~~t---~~CV-~~Ta~-~a~~~G~~~v~v 158 (174)
-.+.|++.|+ ++|++-+... +..+ .+..| ...+.||+ |+.
T Consensus 153 T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYr-Iv~ 200 (229)
T TIGR01675 153 TLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYR-IWG 200 (229)
T ss_pred HHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCce-EEE
Confidence 3455666553 4566655322 2222 22333 33445676 544
No 152
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=22.87 E-value=2.3e+02 Score=23.74 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=36.3
Q ss_pred CChHHHHHHCCCCEEEEeeccCCH-hHHHHHHHHHHCCCCeEEEeccccc
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPN-CIRQTVFDAVELDYKSITIIVDATA 164 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~-CV~~Ta~~a~~~G~~~v~vv~Da~~ 164 (174)
.++.+.++++++++|+|+.-..+. ....-+..+.+.|.+ |.++.|...
T Consensus 178 ~~l~~~i~~~~id~ViIa~p~~~~~~~~~ll~~~~~~gv~-V~~vP~~~e 226 (445)
T TIGR03025 178 DDLVELVRAHRVDEVIIALPLSEEARILELLLQLRDLGVD-VRLVPDLFE 226 (445)
T ss_pred HHHHHHHHhCCCCEEEEecCcccHHHHHHHHHHHHhcCCE-EEEeCchhh
Confidence 468899999999999999655443 334455667788999 999987653
No 153
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=22.79 E-value=3.3e+02 Score=20.84 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=42.2
Q ss_pred CCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCChhh
Q 030598 115 ATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEI 170 (174)
Q Consensus 115 ~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~~ 170 (174)
+.-+.+...+.|.+-+.|.|.+.+-.+.+....|.+.|.. +.-|.....+++.
T Consensus 69 G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~---v~iDl~~~~~~~~ 121 (217)
T COG0269 69 GAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKE---VQIDLIGVWDPEQ 121 (217)
T ss_pred hHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCe---EEEEeecCCCHHH
Confidence 3445556667999999999999999999999999998766 5667777666543
No 154
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=22.71 E-value=2.5e+02 Score=18.93 Aligned_cols=48 Identities=10% Similarity=0.264 Sum_probs=31.8
Q ss_pred EEEEcccccccCCCC-cccc---CCccchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 11 LLVIDMQNDFILDDG-LMRV---DGGKAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 11 LlviD~Q~~f~~~~g-~~~~---~~~~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
||++|+=+-+..... .... -..+...+.+.++++..+++|+++..++.
T Consensus 2 li~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn 53 (128)
T TIGR01681 2 VIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASY 53 (128)
T ss_pred EEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeC
Confidence 677888887776311 0000 01114688999999999999999887743
No 155
>PRK09604 UGMP family protein; Validated
Probab=22.70 E-value=1.3e+02 Score=24.33 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=29.6
Q ss_pred HHHHCCCCEEEEeeccCCHhHHHHH--HHHHHCCCCeEEEecc
Q 030598 121 FLRTAGIDSLVIVGVQTPNCIRQTV--FDAVELDYKSITIIVD 161 (174)
Q Consensus 121 ~L~~~gi~~lii~G~~t~~CV~~Ta--~~a~~~G~~~v~vv~D 161 (174)
++++.|+++|+++|-..-.|++... ..+.++|++ +++..-
T Consensus 249 ~~~~~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~-v~~~~~ 290 (332)
T PRK09604 249 ALKQTGVKTLVVAGGVAANSGLRERLAELAKKRGIE-VFIPPL 290 (332)
T ss_pred HHHHhCCCeEEEcChHHHHHHHHHHHHHHHHHCCCE-EECCCC
Confidence 3445689999999988888888555 334567898 877664
No 156
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=22.70 E-value=1.9e+02 Score=21.34 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=25.7
Q ss_pred EEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 11 LLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 11 LlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
||++|+=--+++. + ....+...+.++.++++|++++.++
T Consensus 1 ~i~~DlDGTLL~~-------~-~~~~~~~~~~l~~l~~~gi~~~i~T 39 (221)
T TIGR02463 1 WVFSDLDGTLLDS-------H-SYDWQPAAPWLTRLQEAGIPVILCT 39 (221)
T ss_pred CEEEeCCCCCcCC-------C-CCCcHHHHHHHHHHHHCCCeEEEEc
Confidence 4667765555542 1 2234445678888899999999884
No 157
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=22.64 E-value=59 Score=18.65 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.4
Q ss_pred CChHHHHHHCCCCEEEEeecc
Q 030598 116 THLNSFLRTAGIDSLVIVGVQ 136 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~ 136 (174)
.+|..++.++-|..|.+.|--
T Consensus 13 ~DLrS~I~~~~I~ql~ipGsH 33 (51)
T PF03490_consen 13 SDLRSSIGEMAITQLFIPGSH 33 (51)
T ss_pred HHHHHHHhcceeeeEEecccc
Confidence 589999999999999999853
No 158
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=22.60 E-value=1.3e+02 Score=22.54 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=15.3
Q ss_pred HHHHHHHcCCeEEEEecccC
Q 030598 42 AVEIARQHGILVVWVVREHD 61 (174)
Q Consensus 42 l~~~~r~~~~~vi~~~~~~~ 61 (174)
.++.|+..|+|+|...++..
T Consensus 123 Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 123 ALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred HHHHHHHcCCCEEEEeeCCC
Confidence 35667889999999876553
No 159
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=22.54 E-value=3.2e+02 Score=22.10 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=38.0
Q ss_pred CCCeEEeCCCCCCCCCCChHHHHHHCCCC----EEEEeeccCCHhHHHHHHHHHHCCCCeEEEeccccc
Q 030598 100 EGDYKVVKMRFSAFFATHLNSFLRTAGID----SLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATA 164 (174)
Q Consensus 100 ~~~~v~~K~~~s~f~~~~l~~~L~~~gi~----~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~ 164 (174)
+++.+++.. + +..+.+.|+..--+ +|||+=---+.==..+|+.+.+.|.. ++++.|.-.
T Consensus 119 dg~~IlTh~-~----S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~-~~~I~Dsa~ 181 (301)
T COG1184 119 DGDVILTHS-F----SKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIP-VTVIVDSAV 181 (301)
T ss_pred CCCEEEEec-C----cHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCc-eEEEechHH
Confidence 566666643 2 35555555543322 66766544444466788899999988 999988743
No 160
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=22.51 E-value=42 Score=21.22 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=31.8
Q ss_pred CCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecc
Q 030598 107 KMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVD 161 (174)
Q Consensus 107 K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~D 161 (174)
|...++|.+++|..||-+++. +.+-.=-...+..+++.|+- -.|..+
T Consensus 23 ~~y~~cF~GselVdWL~~~~~-------~~~R~eAv~~gq~Ll~~g~i-~hV~~~ 69 (81)
T cd04448 23 RTYTNCILGKELVNWLIRQGK-------AATRVQAIAIGQALLDAGWI-ECVSDD 69 (81)
T ss_pred EEcCcccChHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHCCCE-EecCCC
Confidence 456789999999999998752 13333334555677888886 665544
No 161
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=22.48 E-value=2.8e+02 Score=24.31 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=29.3
Q ss_pred CCCCCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCC
Q 030598 4 TKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGI 51 (174)
Q Consensus 4 ~~~~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~ 51 (174)
.++-++.+|+-|||-|-+..... .....+-..+-+.++++|.
T Consensus 434 e~M~k~lfV~SDMeFD~a~~~~~------~~w~T~~e~i~~~f~~aGY 475 (534)
T PF11443_consen 434 EDMPKRLFVFSDMEFDQASNSSD------RPWETNFEAIKRKFEEAGY 475 (534)
T ss_pred HHCCceEEEEecccccccccccc------CccccHHHHHHHHHHHhCC
Confidence 45668899999999998873211 2345566667777788886
No 162
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=22.47 E-value=2.4e+02 Score=20.03 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 33 KAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 33 ~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
..+-+.+.++++..+++|.++++++
T Consensus 26 ~~~~~~~~~a~~~l~~~G~~ivy~T 50 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNGYKILYLT 50 (157)
T ss_pred CcCCHHHHHHHHHHHHcCCeEEEEc
Confidence 4567888899999999999999985
No 163
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=22.40 E-value=2.3e+02 Score=22.90 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=29.4
Q ss_pred hHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEe
Q 030598 118 LNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITII 159 (174)
Q Consensus 118 l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv 159 (174)
..+.|++++|+.|++.|-... +.+|..+.+.|+. |+-+
T Consensus 84 ~~~~l~~~~Id~Li~IGGdgs---~~~a~~L~e~~i~-vigi 121 (317)
T cd00763 84 AIEQLKKHGIDALVVIGGDGS---YMGAMRLTEHGFP-CVGL 121 (317)
T ss_pred HHHHHHHcCCCEEEEECCchH---HHHHHHHHHcCCC-EEEe
Confidence 456788999999999998665 5667777777888 7644
No 164
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=22.26 E-value=1.2e+02 Score=21.64 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=19.7
Q ss_pred chhHHHHHHHHHHHHcCCeEEEEe
Q 030598 34 AIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 34 ~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
...+.+.++++..++.|++++.++
T Consensus 26 ~~~pgv~e~L~~Lk~~G~~l~i~T 49 (176)
T TIGR00213 26 EFIDGVIDALRELKKMGYALVLVT 49 (176)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEe
Confidence 346778889999999999988774
No 165
>PRK10736 hypothetical protein; Provisional
Probab=22.20 E-value=4.7e+02 Score=21.83 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=31.4
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHH-HHHHHC-CCCeEEEecccccCCChhhhh
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTV-FDAVEL-DYKSITIIVDATAAATPEIHA 172 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta-~~a~~~-G~~~v~vv~Da~~~~~~~~h~ 172 (174)
..|...|.+.| -+||+|++..+ ...| +.|++. |.. |.|+.....-.-|..|.
T Consensus 127 ~~l~~~la~~g--~~IVSGlA~Gi--D~~AH~~aL~~~g~T-IaVlg~Gld~~YP~~n~ 180 (374)
T PRK10736 127 RLFCEELAKNG--LTITSGLARGI--DGVAHRAALQAGGKT-IAVLGNGLENIYPRRHA 180 (374)
T ss_pred HHHHHHHHHCC--CEEECcchhhH--HHHHHHHHHHcCCCE-EEEECCCCCccCCHhHH
Confidence 34666777777 48899988632 2222 335555 566 77777776655454443
No 166
>PRK09165 replicative DNA helicase; Provisional
Probab=22.14 E-value=1.6e+02 Score=25.40 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=29.7
Q ss_pred eEEEEEcccccccCCCCccccCCccchhHHH-HHHHHHHHHcCCeEEEEeccc
Q 030598 9 TALLVIDMQNDFILDDGLMRVDGGKAIVPNV-IKAVEIARQHGILVVWVVREH 60 (174)
Q Consensus 9 ~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i-~~l~~~~r~~~~~vi~~~~~~ 60 (174)
.-+||||.-.-+..+... ...+....+..| ..|-..|++.++|||.+.+-.
T Consensus 342 ~~lvvIDyLqli~~~~~~-~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLn 393 (497)
T PRK09165 342 LDLLVVDYLQLIRGSSKR-SSDNRVQEISEITQGLKALAKELNIPVIALSQLS 393 (497)
T ss_pred CCEEEEcchHhccCCCCC-CCCchHHHHHHHHHHHHHHHHHhCCeEEEeeccc
Confidence 568999986655432111 011111234445 445556799999999996533
No 167
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=21.98 E-value=2.1e+02 Score=20.94 Aligned_cols=51 Identities=14% Similarity=-0.027 Sum_probs=34.6
Q ss_pred CCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHH-HCCCCeEEEecccccCC
Q 030598 115 ATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAV-ELDYKSITIIVDATAAA 166 (174)
Q Consensus 115 ~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~-~~G~~~v~vv~Da~~~~ 166 (174)
..++.+.++..+++.+++.|.+.-.+|-.-+.... ....+ -.++.++..+.
T Consensus 53 ~~~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~-~lvl~~~~~~~ 104 (242)
T PRK11126 53 SRLLSQTLQSYNILPYWLVGYSLGGRIAMYYACQGLAGGLC-GLIVEGGNPGL 104 (242)
T ss_pred HHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCCccccc-EEEEeCCCCCC
Confidence 35788888889999999999998887765554443 22266 44555544433
No 168
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.97 E-value=2.2e+02 Score=21.80 Aligned_cols=39 Identities=15% Similarity=0.364 Sum_probs=28.5
Q ss_pred EEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 11 LLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 11 LlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
||++|+=--++++. ..+-+...+.++.++++|+.+++++
T Consensus 4 li~~DlDGTLl~~~--------~~i~~~~~~ai~~l~~~G~~~~iaT 42 (272)
T PRK15126 4 LAAFDMDGTLLMPD--------HHLGEKTLSTLARLRERDITLTFAT 42 (272)
T ss_pred EEEEeCCCcCcCCC--------CcCCHHHHHHHHHHHHCCCEEEEEC
Confidence 78888766666532 2356666778888899999999884
No 169
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.95 E-value=1.4e+02 Score=24.24 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=28.9
Q ss_pred CeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEeccc
Q 030598 8 NTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREH 60 (174)
Q Consensus 8 ~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~ 60 (174)
.+.||++| .|-..+..+...++++-+.+|.+ +..+||+|+.++.
T Consensus 146 ~P~LLLmD------EPLaSLD~~RK~EilpylERL~~---e~~IPIlYVSHS~ 189 (352)
T COG4148 146 APELLLMD------EPLASLDLPRKREILPYLERLRD---EINIPILYVSHSL 189 (352)
T ss_pred CCCeeeec------CchhhcccchhhHHHHHHHHHHH---hcCCCEEEEecCH
Confidence 34566666 23345556667777777777655 4679999997543
No 170
>PF12696 TraG-D_C: TraM recognition site of TraD and TraG
Probab=21.91 E-value=2.2e+02 Score=19.16 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHcCCeEEEEecc
Q 030598 36 VPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 36 ~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
++.+.+++..+|..|+.++.+.+.
T Consensus 15 ~~~l~~~~~~~r~~gi~~~~~~Qs 38 (128)
T PF12696_consen 15 IPGLEDLLATGRSYGISFILAFQS 38 (128)
T ss_pred cHhHHHHHHHHhcCCCEEEEEEcc
Confidence 577899999999999998888654
No 171
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=21.71 E-value=1.3e+02 Score=23.35 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=27.3
Q ss_pred EEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 11 LLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 11 LlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
++++|+..-+... ...++.+.+.++..+++|.++++++
T Consensus 4 ~~~~D~DGtl~~~---------~~~~~ga~e~l~~L~~~g~~~~~~T 41 (279)
T TIGR01452 4 GFIFDCDGVLWLG---------ERVVPGAPELLDRLARAGKAALFVT 41 (279)
T ss_pred EEEEeCCCceEcC---------CeeCcCHHHHHHHHHHCCCeEEEEe
Confidence 5777988888762 2234446667777789999998885
No 172
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=21.69 E-value=1.4e+02 Score=27.97 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhh
Q 030598 35 IVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQ 72 (174)
Q Consensus 35 ~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~ 72 (174)
-++.+..+++.++++|+.||-+....+|.++..+.|.+
T Consensus 806 ~~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~~t~~fg~ 843 (912)
T TIGR02171 806 NMNSLKAFIDETAKKGVKVIGTIFPQSPGYKNTGSFGR 843 (912)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCCCCCccccCcccc
Confidence 37888899999999999999999888888876665544
No 173
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=21.67 E-value=1.9e+02 Score=25.47 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=38.5
Q ss_pred CCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHH-------HHHHHCCCCe--EEEecccc
Q 030598 111 SAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTV-------FDAVELDYKS--ITIIVDAT 163 (174)
Q Consensus 111 s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta-------~~a~~~G~~~--v~vv~Da~ 163 (174)
+.|.+..|...+....-.+|-|.|+.+|..|.+.. .-|.+.|.++ |+++.|.=
T Consensus 110 ~~~~n~~l~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGR 171 (558)
T PLN02538 110 KIFEGEGFKYIKEAFATGTLHLIGLLSDGGVHSRLDQLQLLLKGAAERGAKRIRVHVLTDGR 171 (558)
T ss_pred CcccCHHHHHHHHHhcCCeeEEEEeccCCCcccHHHHHHHHHHHHHHcCCCeEEEEEEcCCC
Confidence 45556677777776556799999999999999765 3456778743 56677764
No 174
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=21.64 E-value=2e+02 Score=17.40 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=21.8
Q ss_pred CEEEEeeccCCHhHHHHHHHHHHCCCCeEEEeccccc
Q 030598 128 DSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATA 164 (174)
Q Consensus 128 ~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~ 164 (174)
++|++.. .+.......+..+.+.||++|.++.....
T Consensus 57 ~~iv~~c-~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 57 KPVVVYC-RSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CeEEEEe-CCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 4555554 44444456667777888865777665543
No 175
>PF02615 Ldh_2: Malate/L-lactate dehydrogenase; InterPro: IPR003767 The malate dehydrogenase (MDH) of some extremophilies is more similar to the L-lactate dehydrogenases (L-LDH) 1.1.1.27 from EC from various sources than to other MDHs []. This family consists of bacterial and archaeal malate/L-lactate dehydrogenases. The archaebacterial malate dehydrogenase 1.1.1.37 from EC, 1.1.1.82 from EC deviates from the eubacterial and eukaryotic enzymes having a low selectivity for the coenzyme (NAD(H) or NADP(H)) and catalyzing the reduction of oxalacetate to malate more efficiently than the reverse reaction [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1VBI_A 2G8Y_B 2X06_H 1Z2I_B 1X0A_A 1V9N_A 1XRH_G 3I0P_A 2CWH_B 2CWF_B ....
Probab=21.51 E-value=62 Score=26.40 Aligned_cols=45 Identities=31% Similarity=0.245 Sum_probs=33.9
Q ss_pred CeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCC
Q 030598 8 NTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDP 62 (174)
Q Consensus 8 ~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~ 62 (174)
..+++++|=+++|-. -.....+...++.||+.|+-++.++..++-
T Consensus 73 ~~a~~~vDg~~g~G~----------~~~~~A~~~aiekA~~~Gia~v~vrns~H~ 117 (335)
T PF02615_consen 73 TPASAVVDGDNGFGQ----------VAAKFAMELAIEKAKEHGIAAVAVRNSNHF 117 (335)
T ss_dssp ETTEEEEEETTBBHH----------HHHHHHHHHHHHHHHHHSEEEEEEEEEE--
T ss_pred cCeEEEEECCCCccH----------HHHHHHHHHHHHHHHHcCEEEEEEecCCCC
Confidence 457888998888754 234566788999999999999999876653
No 176
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.45 E-value=2e+02 Score=18.92 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEecc
Q 030598 35 IVPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 35 ~~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
.-..+.+.++.+++.|.++|.++..
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCC
Confidence 3566777888999999999988643
No 177
>TIGR02589 cas_Csd2 CRISPR-associated protein, Csd2 family. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csd2 protein of the Dvulg subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02590, the Csh2 protein of the Hmari CRISPR subtype.
Probab=21.22 E-value=60 Score=25.90 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=23.7
Q ss_pred eeccCCHhHHHHHHHHHHC--CCCeEEEeccc
Q 030598 133 VGVQTPNCIRQTVFDAVEL--DYKSITIIVDA 162 (174)
Q Consensus 133 ~G~~t~~CV~~Ta~~a~~~--G~~~v~vv~Da 162 (174)
.|+.||+|+.-++|+-++. |+. ++|=++.
T Consensus 33 ~glVSDV~LKRkIRd~l~~~~g~~-IfV~~~~ 63 (284)
T TIGR02589 33 HGLVTDVSLKRKIRNRVLLMGGQD-IFVQEKA 63 (284)
T ss_pred CEEECcceecHHHHHHHHhcCCce-EEEEecc
Confidence 3788999999999998876 799 9886553
No 178
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=21.12 E-value=1.8e+02 Score=24.40 Aligned_cols=32 Identities=6% Similarity=0.085 Sum_probs=18.2
Q ss_pred CCCEEEEeeccCCHhHHH-HHHHHHHCCCCeEEEe
Q 030598 126 GIDSLVIVGVQTPNCIRQ-TVFDAVELDYKSITII 159 (174)
Q Consensus 126 gi~~lii~G~~t~~CV~~-Ta~~a~~~G~~~v~vv 159 (174)
|-++++|+|.++.+..-+ .|+.+ ..|.+ |.++
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~-Vi~v 72 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGAD-TLGV 72 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCCe-EEEE
Confidence 335666666666665554 44444 66666 5554
No 179
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=21.12 E-value=2.1e+02 Score=23.95 Aligned_cols=34 Identities=6% Similarity=0.088 Sum_probs=27.8
Q ss_pred CCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 125 AGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 125 ~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
..-++||++-+. +.||+.|++.+-..||+ |+.+.
T Consensus 89 ~~~~HIIts~iE-H~aVl~~~~~Le~~g~~-Vtyl~ 122 (386)
T COG1104 89 QKGKHIITSAIE-HPAVLNTCRYLERQGFE-VTYLP 122 (386)
T ss_pred cCCCeEEEcccc-cHHHHHHHHHHHhcCCe-EEEeC
Confidence 357788888764 88999999999777999 88764
No 180
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=21.07 E-value=1.7e+02 Score=21.42 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=30.7
Q ss_pred CeEEEEEcccccccCCCCcccc-CCccchhHHHHHHHHHHHHcCCeEEEEec
Q 030598 8 NTALLVIDMQNDFILDDGLMRV-DGGKAIVPNVIKAVEIARQHGILVVWVVR 58 (174)
Q Consensus 8 ~~aLlviD~Q~~f~~~~g~~~~-~~~~~~~~~i~~l~~~~r~~~~~vi~~~~ 58 (174)
+.-+||||--..+......-.. .....+...+..|.+.+++.++.++++..
T Consensus 97 ~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 97 SASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred CccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4568999988776541100000 00113344455677778999999999954
No 181
>TIGR01595 cas_CT1132 CRISPR-associated protein, CT1132 family. This protein is found in at least five widely species that contain CRISPR loci. Four cas (CRISPR-associated) proteins that are widely distributed and found near the CRISPR repeats. This protein is found exclusively next to other cas proteins. Its function is unknown.
Probab=20.98 E-value=90 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=22.4
Q ss_pred eeccCCHhHHHHHHHHHHC-CCCeEEEecc
Q 030598 133 VGVQTPNCIRQTVFDAVEL-DYKSITIIVD 161 (174)
Q Consensus 133 ~G~~t~~CV~~Ta~~a~~~-G~~~v~vv~D 161 (174)
.|+.||+|..-++|+-++. |+. |+|-+.
T Consensus 36 ~~~vSDV~lKR~IRd~~~~~G~~-Ifv~~~ 64 (265)
T TIGR01595 36 YLVVSDVRIKRKVRDYLQDMGKS-ILVQTK 64 (265)
T ss_pred cEEECccchhHHHHHHHHhCCCc-EEEEEc
Confidence 4678899999999888764 888 888764
No 182
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.90 E-value=2.5e+02 Score=21.68 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=29.7
Q ss_pred eEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEe
Q 030598 9 TALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 9 ~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
.-+|++|+=.-++++. ..+.+...+.++.+++.|++++.++
T Consensus 4 ~kli~~DlDGTLl~~~--------~~~~~~~~~ai~~l~~~Gi~~~iaT 44 (273)
T PRK00192 4 KLLVFTDLDGTLLDHH--------TYSYEPAKPALKALKEKGIPVIPCT 44 (273)
T ss_pred ceEEEEcCcccCcCCC--------CcCcHHHHHHHHHHHHCCCEEEEEc
Confidence 3488899877777622 2345667778888899999988874
No 183
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.86 E-value=1.1e+02 Score=29.96 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=34.1
Q ss_pred eEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecc
Q 030598 9 TALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVRE 59 (174)
Q Consensus 9 ~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~ 59 (174)
..+||||---+++... .+.+.+.|.+|+..+|+.|+.+|.++..
T Consensus 1141 ~IVVIIDE~AdLm~~~-------~kevE~lI~rLAqkGRAaGIHLILATQR 1184 (1355)
T PRK10263 1141 YIVVLVDEFADLMMTV-------GKKVEELIARLAQKARAAGIHLVLATQR 1184 (1355)
T ss_pred eEEEEEcChHHHHhhh-------hHHHHHHHHHHHHHhhhcCeEEEEEecC
Confidence 3689999887777521 2456677999999999999999998644
No 184
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=20.82 E-value=1.4e+02 Score=21.96 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=28.9
Q ss_pred ChHHHH----HHCCCCEEEEeeccCC-HhHHHHHHHHHHCCCC
Q 030598 117 HLNSFL----RTAGIDSLVIVGVQTP-NCIRQTVFDAVELDYK 154 (174)
Q Consensus 117 ~l~~~L----~~~gi~~lii~G~~t~-~CV~~Ta~~a~~~G~~ 154 (174)
.++... .+.+|+.|+|||-..- +=.-++.+.+++.|..
T Consensus 54 GIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~aLh~NGid 96 (176)
T PF04208_consen 54 GIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLLALHENGID 96 (176)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccCCCcchHHHHHHHHcCCC
Confidence 445444 4568999999999986 5556888888888874
No 185
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=20.73 E-value=2.1e+02 Score=23.40 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=32.9
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCC
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELD 152 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G 152 (174)
..+...|++.++++|+.+|.=++.-+..++..+++.-
T Consensus 28 ~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~ 64 (340)
T COG2222 28 AELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERE 64 (340)
T ss_pred HHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999998843
No 186
>PRK14878 UGMP family protein; Provisional
Probab=20.69 E-value=1.6e+02 Score=23.65 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=26.7
Q ss_pred HHHCCCCEEEEeeccCCHhHHHHH-HHH-HHCCCCeEEEecc
Q 030598 122 LRTAGIDSLVIVGVQTPNCIRQTV-FDA-VELDYKSITIIVD 161 (174)
Q Consensus 122 L~~~gi~~lii~G~~t~~CV~~Ta-~~a-~~~G~~~v~vv~D 161 (174)
+++.|+++|+++|-..-.|.+... ... .++|++ |++..-
T Consensus 237 ~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~-v~~~~~ 277 (323)
T PRK14878 237 LAHTGKKEVLLVGGVAANRRLREKLEIMAEDRGAK-FYVVPP 277 (323)
T ss_pred HHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCE-EECCCC
Confidence 444689999999766666666443 333 367998 888764
No 187
>PF07643 DUF1598: Protein of unknown function (DUF1598); InterPro: IPR011487 This is a family of Rhodopirellula baltica hypothetical proteins of about 500 amino acids in length.
Probab=20.59 E-value=2.4e+02 Score=18.13 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=21.2
Q ss_pred HHHH-HCCCCEEEEeeccCCHhHHHHHHHH
Q 030598 120 SFLR-TAGIDSLVIVGVQTPNCIRQTVFDA 148 (174)
Q Consensus 120 ~~L~-~~gi~~lii~G~~t~~CV~~Ta~~a 148 (174)
.-|+ +.|-..|.|.|+..+.-+-.+..+|
T Consensus 34 ~~l~~~LG~QdV~V~Gip~~sh~ArvLVeA 63 (84)
T PF07643_consen 34 DGLRQALGPQDVTVYGIPADSHFARVLVEA 63 (84)
T ss_pred HHHHHHhCCceeEEEccCCccHHHHHHHHh
Confidence 3444 4799999999999998775555443
No 188
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=20.58 E-value=2.1e+02 Score=23.58 Aligned_cols=74 Identities=19% Similarity=0.307 Sum_probs=39.5
Q ss_pred CCCCCCccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeecc-------CCHhHHHHHHHHHHCCCCeEE
Q 030598 85 KGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQ-------TPNCIRQTVFDAVELDYKSIT 157 (174)
Q Consensus 85 ~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~-------t~~CV~~Ta~~a~~~G~~~v~ 157 (174)
+.++|+++++.+ |.+..+.-...|.| ..|.+.+++.. ++|.|.=.- .-.=+.....++.++|.+ |.
T Consensus 8 ~~~~~~~~v~~~---p~~~~~~~~~~~~~--~~l~~~I~~Ak-~~I~i~~yi~~~~~d~~g~~i~~aL~~aa~rGV~-Vr 80 (369)
T PHA03003 8 PPGAGCRIVETL---PKSLGIATQHMSTY--ECFDEIISQAK-KYIYIASFCCNLRSTPEGRLILDKLKEAAESGVK-VT 80 (369)
T ss_pred CCCCCeEEEEeC---CCCCCCCCCCCCHH--HHHHHHHHhhh-hEEEEEEEEecccCCchHHHHHHHHHHhccCCCe-EE
Confidence 445677787777 34443332211222 23333333322 344433321 122356777778889999 99
Q ss_pred EecccccC
Q 030598 158 IIVDATAA 165 (174)
Q Consensus 158 vv~Da~~~ 165 (174)
++-|+.++
T Consensus 81 il~D~~~~ 88 (369)
T PHA03003 81 ILVDEQSG 88 (369)
T ss_pred EEecCCCC
Confidence 99998753
No 189
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=20.56 E-value=3e+02 Score=21.46 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=25.5
Q ss_pred CChHHHHHHCCCC---EEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598 116 THLNSFLRTAGID---SLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160 (174)
Q Consensus 116 ~~l~~~L~~~gi~---~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~ 160 (174)
..|.+++++.|++ +||+.+-.....-...+..+...||++|.++.
T Consensus 73 ~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~ 120 (281)
T PRK11493 73 ETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILA 120 (281)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcC
Confidence 4677888888774 67777532221111223445567887566554
No 190
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=20.52 E-value=2e+02 Score=23.15 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=38.7
Q ss_pred CCCeEEeCCCCCCCCCCChHHHHH---HCCC-CEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccC
Q 030598 100 EGDYKVVKMRFSAFFATHLNSFLR---TAGI-DSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAA 165 (174)
Q Consensus 100 ~~~~v~~K~~~s~f~~~~l~~~L~---~~gi-~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~ 165 (174)
+++.+++ ..+| ......|+ ++|. -+|+++--.-...-..||..+.+.|.. |+++.|+..+
T Consensus 120 ~g~~ILT-~~~S----~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~-vtlI~Dsav~ 183 (310)
T PRK08535 120 DGDVIMT-HCNS----SAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIP-VTLIVDSAVR 183 (310)
T ss_pred CCCEEEE-eCCc----HHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCC-EEEEehhHHH
Confidence 4666666 3344 23333333 2333 466666555554557899999999999 9999998653
No 191
>PLN03006 carbonate dehydratase
Probab=20.49 E-value=3.8e+02 Score=21.67 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=34.1
Q ss_pred CCCCCeEEeCCCCCCCC---------CCChHHHHHHCCCCEEEEeeccCCHhHHHH
Q 030598 98 IKEGDYKVVKMRFSAFF---------ATHLNSFLRTAGIDSLVIVGVQTPNCIRQT 144 (174)
Q Consensus 98 ~~~~~~v~~K~~~s~f~---------~~~l~~~L~~~gi~~lii~G~~t~~CV~~T 144 (174)
-.++|.++.++--+... ...|+..+...+++.|+|+|=..-+-|.+.
T Consensus 133 ~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa 188 (301)
T PLN03006 133 FQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQAL 188 (301)
T ss_pred CCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHH
Confidence 45788888777444431 236888888999999999997776666643
No 192
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=20.47 E-value=1.6e+02 Score=25.86 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=30.9
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecc
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVD 161 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~D 161 (174)
.+|+.+.-+..-+-|+|.|-. .=+++|+++.+.||. |++|+-
T Consensus 114 e~le~~~~~v~~svLVIGGGv---AGitAAl~La~~G~~-v~LVEK 155 (622)
T COG1148 114 EPLEEIKVEVSKSVLVIGGGV---AGITAALELADMGFK-VYLVEK 155 (622)
T ss_pred CChhhHHHhhccceEEEcCcH---HHHHHHHHHHHcCCe-EEEEec
Confidence 556666655565667776643 346899999999999 999874
No 193
>PLN03019 carbonic anhydrase
Probab=20.23 E-value=3.7e+02 Score=22.04 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=34.2
Q ss_pred CCCCCeEEeCCCCCCCC----------CCChHHHHHHCCCCEEEEeeccCCHhHHHHH
Q 030598 98 IKEGDYKVVKMRFSAFF----------ATHLNSFLRTAGIDSLVIVGVQTPNCIRQTV 145 (174)
Q Consensus 98 ~~~~~~v~~K~~~s~f~----------~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta 145 (174)
..++|.++.++--+... ...|+..+...++++|+|+|=..-+.|.++.
T Consensus 175 ~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal 232 (330)
T PLN03019 175 FHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLM 232 (330)
T ss_pred CCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 44688777766333221 2468888888999999999988777776654
No 194
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=20.21 E-value=1e+02 Score=23.71 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=29.9
Q ss_pred CCCCChHHHHHHC--CCCEEEEeeccCCHhHHHHH-------HHHHHCCCCe--EEEecccccC
Q 030598 113 FFATHLNSFLRTA--GIDSLVIVGVQTPNCIRQTV-------FDAVELDYKS--ITIIVDATAA 165 (174)
Q Consensus 113 f~~~~l~~~L~~~--gi~~lii~G~~t~~CV~~Ta-------~~a~~~G~~~--v~vv~Da~~~ 165 (174)
|.+..|...++.. +=.+|-|.|+.+|+.|.+.. .-|.+.|..+ |+.+.|+=-.
T Consensus 11 ~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt 74 (223)
T PF06415_consen 11 FKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDT 74 (223)
T ss_dssp GTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS
T ss_pred ccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCC
Confidence 3455555555542 22589999999999998654 4456778653 5677776433
No 195
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=20.16 E-value=40 Score=24.19 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=25.7
Q ss_pred cccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEE
Q 030598 92 LVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLV 131 (174)
Q Consensus 92 l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~li 131 (174)
|.+.+.|...-+.+.+...+.| ++.|+..||..|+--+.
T Consensus 44 L~~~ypPA~Tt~~l~q~~~D~F-g~aL~~aLR~~GYaV~e 82 (151)
T PRK13883 44 LATLYPPAQTRFELQQPTPDAF-GQALVKALRDKGYALLE 82 (151)
T ss_pred HHHhCCCcceEEEEecCCCcHH-HHHHHHHHHHcCeEEEe
Confidence 4444455544455655555677 79999999999975544
No 196
>PRK10349 carboxylesterase BioH; Provisional
Probab=20.12 E-value=1.8e+02 Score=21.74 Aligned_cols=47 Identities=19% Similarity=0.112 Sum_probs=35.6
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHC--CCCeEEEecccc
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVEL--DYKSITIIVDAT 163 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~--G~~~v~vv~Da~ 163 (174)
.++...|++..+.+++|.|-.-..+-...+..+.++ +.+ +.++.+|-
T Consensus 186 ~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~~-~~~i~~~g 234 (256)
T PRK10349 186 VDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSE-SYIFAKAA 234 (256)
T ss_pred CccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCCe-EEEeCCCC
Confidence 466778888899999999988877766666655554 677 88887764
No 197
>TIGR00312 cbiD cobalamin biosynthesis protein CbiD. role_id
Probab=20.11 E-value=1.3e+02 Score=24.76 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=41.2
Q ss_pred ccchhHHHHHHHHHHHHcCCeE-EEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCCCccccCCCCCCCCeEEeCCCC
Q 030598 32 GKAIVPNVIKAVEIARQHGILV-VWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRF 110 (174)
Q Consensus 32 ~~~~~~~i~~l~~~~r~~~~~v-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~l~~~~~~~v~~K~~~ 110 (174)
.+.+.+.|..-++.+++.|... +++ +|..|.++..++-+...+.++. .
T Consensus 169 ~~A~~~Si~~~i~va~a~g~~~~vl~----------------------------~G~~ge~~a~~~~~~~~~~~V~---~ 217 (347)
T TIGR00312 169 AEAYLASLACQIDTAAAQGHQCLVFV----------------------------PGNIGLDLARQWGVPLDDEIIK---T 217 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEc----------------------------cChHHHHHHHHhCCCCcccEEE---E
Confidence 3567888887788888887643 344 2223333333332222222222 3
Q ss_pred CCCCCCChHHHHHHCCCCEEEEeeccC
Q 030598 111 SAFFATHLNSFLRTAGIDSLVIVGVQT 137 (174)
Q Consensus 111 s~f~~~~l~~~L~~~gi~~lii~G~~t 137 (174)
|-|.+..|+.. .++|+++|+++|.-.
T Consensus 218 gnfiG~~L~~a-~~~g~~~i~l~G~~G 243 (347)
T TIGR00312 218 ANFLGSMLVAA-AAVGVEEILLLGHAG 243 (347)
T ss_pred ehhhHHHHHHH-HHcCCCEEEEEeEhH
Confidence 44544444444 448999999999743
No 198
>PLN02154 carbonic anhydrase
Probab=20.11 E-value=4e+02 Score=21.40 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=34.3
Q ss_pred CCCCCeEEeCCCCCCCCC---------CChHHHHHHCCCCEEEEeeccCCHhHHHHH
Q 030598 98 IKEGDYKVVKMRFSAFFA---------THLNSFLRTAGIDSLVIVGVQTPNCIRQTV 145 (174)
Q Consensus 98 ~~~~~~v~~K~~~s~f~~---------~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta 145 (174)
..++|.++.++--+.... ..|+..+...+++.|+|+|=..-+.|.++.
T Consensus 127 ~~pGdlFvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal 183 (290)
T PLN02154 127 FQPGEAFTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHSNCGGIAALM 183 (290)
T ss_pred CCCCCEEEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 346787777663333221 258888889999999999988877777654
No 199
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=20.09 E-value=1.2e+02 Score=21.29 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEe
Q 030598 35 IVPNVIKAVEIARQHGILVVWVV 57 (174)
Q Consensus 35 ~~~~i~~l~~~~r~~~~~vi~~~ 57 (174)
+..|=..|-+..|+.|+||++.+
T Consensus 102 VaTnD~eLk~rlr~~GIPvi~lr 124 (136)
T COG1412 102 VATNDKELKRRLRENGIPVITLR 124 (136)
T ss_pred EEeCCHHHHHHHHHcCCCEEEEe
Confidence 34555677888889999999996
No 200
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=20.05 E-value=1.6e+02 Score=20.67 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=20.6
Q ss_pred CChHHHHHHCCCCEEEEeeccCCHhHHHHH
Q 030598 116 THLNSFLRTAGIDSLVIVGVQTPNCIRQTV 145 (174)
Q Consensus 116 ~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta 145 (174)
..|..+||..|+++++.-++ .|.=++..|
T Consensus 10 ~~Lar~LR~lG~Dt~~~~~~-~D~~il~~A 38 (147)
T PF01927_consen 10 GRLARWLRLLGYDTLYSRDI-DDDEILELA 38 (147)
T ss_pred HHHHHHHHHCCCcEEEeCCC-ChHHHHHHh
Confidence 35888999999999988866 444444333
Done!