Query 030599
Match_columns 174
No_of_seqs 136 out of 270
Neff 2.9
Searched_HMMs 29240
Date Tue Mar 26 02:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 2.6E-35 9E-40 220.8 1.2 76 57-132 2-93 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 1.8E-33 6E-38 208.8 0.6 68 61-128 1-84 (88)
3 1wj0_A Squamosa promoter-bindi 99.9 5.4E-28 1.8E-32 168.5 1.1 51 62-112 2-52 (60)
4 2dt7_A Splicing factor 3A subu 25.3 11 0.00037 23.5 -0.6 11 75-85 19-29 (38)
5 2pw4_A Uncharacterized protein 22.8 42 0.0014 27.0 2.2 43 80-122 140-187 (188)
6 3ga8_A HTH-type transcriptiona 20.4 16 0.00055 24.6 -0.6 21 91-111 23-43 (78)
7 1vk6_A NADH pyrophosphatase; 1 18.3 23 0.00078 29.0 -0.3 33 78-111 100-132 (269)
8 3o9x_A Uncharacterized HTH-typ 18.2 17 0.00057 25.6 -1.0 21 91-111 23-43 (133)
9 2yrt_A Chord containing protei 16.7 69 0.0024 22.6 2.0 42 57-102 2-44 (75)
10 3tj3_C Nuclear pore complex pr 13.4 51 0.0017 25.3 0.5 31 7-37 4-34 (114)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=2.6e-35 Score=220.81 Aligned_cols=76 Identities=71% Similarity=1.185 Sum_probs=64.2
Q ss_pred CCCCCCCcceecCCCccccccChhhhhhccchhhhhccceEEECCccccccHHHH----------------HHHhhhhhh
Q 030599 57 SSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRLAGHNER 120 (174)
Q Consensus 57 ~~g~~g~~~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCs----------------rrLa~HN~R 120 (174)
++||++.++||||||++||+.+|.||+||+|||.|+|||+|+|+|+++||||||+ ++|++||+|
T Consensus 2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R 81 (94)
T 1ul4_A 2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER 81 (94)
T ss_dssp ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred CCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999 789999999
Q ss_pred hccccccccCCC
Q 030599 121 RRKNAAESNGEG 132 (174)
Q Consensus 121 RRK~~~~~~~~g 132 (174)
|||+++++...+
T Consensus 82 RRk~~~~~~~~~ 93 (94)
T 1ul4_A 82 RRKSSGESGPSS 93 (94)
T ss_dssp CCSCCCC-----
T ss_pred hccCCCCcCCCC
Confidence 999999986543
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.97 E-value=1.8e-33 Score=208.75 Aligned_cols=68 Identities=43% Similarity=0.891 Sum_probs=63.7
Q ss_pred CCCcceecCCCccccccChhhhhhccchhhhhccceEEECCccccccHHHH----------------HHHhhhhhhhccc
Q 030599 61 SGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRLAGHNERRRKN 124 (174)
Q Consensus 61 ~g~~~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCs----------------rrLa~HN~RRRK~ 124 (174)
+|.++||||||++||+.+|.||+||+|||.|+|||+|+|+|+++||||||| ++|++||+|||++
T Consensus 1 G~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~ 80 (88)
T 1ul5_A 1 GSVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRK 80 (88)
T ss_dssp --CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCC
T ss_pred CCCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccC
Confidence 357899999999999999999999999999999999999999999999999 7899999999998
Q ss_pred cccc
Q 030599 125 AAES 128 (174)
Q Consensus 125 ~~~~ 128 (174)
++++
T Consensus 81 ~~~~ 84 (88)
T 1ul5_A 81 PVDK 84 (88)
T ss_dssp SCSS
T ss_pred CccC
Confidence 8875
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.93 E-value=5.4e-28 Score=168.54 Aligned_cols=51 Identities=71% Similarity=1.264 Sum_probs=48.7
Q ss_pred CCcceecCCCccccccChhhhhhccchhhhhccceEEECCccccccHHHHH
Q 030599 62 GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR 112 (174)
Q Consensus 62 g~~~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCsr 112 (174)
+.++||||||++||+.+|.||+||||||.|+|||+|+++|.++|||||||+
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsr 52 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSR 52 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCS
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccC
Confidence 578999999999999999999999999999999999999999999999983
No 4
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.33 E-value=11 Score=23.51 Aligned_cols=11 Identities=45% Similarity=1.017 Sum_probs=5.8
Q ss_pred cccChhhhhhc
Q 030599 75 LSDAKQYHRRH 85 (174)
Q Consensus 75 Ls~~K~YhrRh 85 (174)
|..+|+||+||
T Consensus 19 lk~Ike~Hrr~ 29 (38)
T 2dt7_A 19 LKQIKEFHRKH 29 (38)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhC
Confidence 33455566555
No 5
>2pw4_A Uncharacterized protein DUF1470; YP_510353.1, protein of unknown function DUF1470, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Jannaschia SP} PDB: 3h0n_A*
Probab=22.84 E-value=42 Score=27.03 Aligned_cols=43 Identities=28% Similarity=0.536 Sum_probs=28.8
Q ss_pred hhhhhccchhhhhccceEEEC--CccccccH-HHH--HHHhhhhhhhc
Q 030599 80 QYHRRHKVCEVHAKAQVVLMG--GIRQRFCQ-QCS--RRLAGHNERRR 122 (174)
Q Consensus 80 ~YhrRhRVCE~H~KAp~V~v~--G~~qRFCQ-QCs--rrLa~HN~RRR 122 (174)
.-..|-|+|+.+-=.-.++-- +...|||- -|| .+.+.|.+|++
T Consensus 140 ~~~~rlr~C~~~~C~~~f~D~sr~~~rrwCs~~CgnR~k~~~~r~R~~ 187 (188)
T 2pw4_A 140 QNVRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQNRVKAAAFRERRA 187 (188)
T ss_dssp TCGGGEEECCSTTCCCEEECCSSSCCCCCSSHHHHHHHHHHTTTTC--
T ss_pred CccccccCCCCCCCCEEEecCCCCCCCCccCccccCHHHHHHHHhhhc
Confidence 345799999976544444443 68999995 588 56777877664
No 6
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.42 E-value=16 Score=24.62 Aligned_cols=21 Identities=19% Similarity=0.634 Sum_probs=17.8
Q ss_pred hhccceEEECCccccccHHHH
Q 030599 91 HAKAQVVLMGGIRQRFCQQCS 111 (174)
Q Consensus 91 H~KAp~V~v~G~~qRFCQQCs 111 (174)
-.+-..++|..++--+|++||
T Consensus 23 ~~~G~~~~I~~Vp~~~C~~CG 43 (78)
T 3ga8_A 23 TFRGRKTVLKGIHGLYCVHCE 43 (78)
T ss_dssp EETTEEEEEEEEEEEEETTTC
T ss_pred EECCEEEEEcCceeEECCCCC
Confidence 346667888999999999999
No 7
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=18.25 E-value=23 Score=29.03 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=26.3
Q ss_pred ChhhhhhccchhhhhccceEEECCccccccHHHH
Q 030599 78 AKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS 111 (174)
Q Consensus 78 ~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCs 111 (174)
+-.++++++-|..+-. |....++...+.|..|+
T Consensus 100 l~~w~~~~~fC~~CG~-~~~~~~~~~~~~C~~C~ 132 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCGH-EMYPSKTEWAMLCSHCR 132 (269)
T ss_dssp HHHHHHTTSBCTTTCC-BEEECSSSSCEEESSSS
T ss_pred HHhhhhcCCccccCCC-cCccCCCceeeeCCCCC
Confidence 3568889999988764 55667888899999998
No 8
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=18.19 E-value=17 Score=25.64 Aligned_cols=21 Identities=19% Similarity=0.634 Sum_probs=17.7
Q ss_pred hhccceEEECCccccccHHHH
Q 030599 91 HAKAQVVLMGGIRQRFCQQCS 111 (174)
Q Consensus 91 H~KAp~V~v~G~~qRFCQQCs 111 (174)
-.+-..++|.+++..||.+||
T Consensus 23 ~~kg~~~~v~~v~~~~C~~CG 43 (133)
T 3o9x_A 23 TFRGRKTVLKGIHGLYCVHCE 43 (133)
T ss_dssp EETTEEEEEEEEEEEEESSSS
T ss_pred EECCEEEEECCCceeECCCCC
Confidence 345667888899999999999
No 9
>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.66 E-value=69 Score=22.65 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=29.3
Q ss_pred CCCCCCC-cceecCCCccccccChhhhhhccchhhhhccceEEECCc
Q 030599 57 SSGGSGL-RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGI 102 (174)
Q Consensus 57 ~~g~~g~-~~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~ 102 (174)
+.|+.|+ ..|+--||+........ -.-.|-+|.-.|+ .-+|.
T Consensus 2 ~~~~~~m~~~C~n~GC~~~f~~~~n---~~~~C~yHpG~Pv-FHdg~ 44 (75)
T 2yrt_A 2 SSGSSGMALLCYNRGCGQRFDPETN---SDDACTYHPGVPV-FHDAL 44 (75)
T ss_dssp CCCCCSCCEECCSTTTCCEECTTTC---CTTTBCCCSSCEE-EETTE
T ss_pred CCccCcCccccCCCCCCCEecCCCC---CCCCeECCCCCcc-cCCCC
Confidence 3456665 48999999997754322 3467999999985 45665
No 10
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=13.38 E-value=51 Score=25.31 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=21.1
Q ss_pred ccceeeeechhhhhhccccCCCCCCCCcccc
Q 030599 7 NKMVKVVKKEEATAAFVDSDDDDDDGGEYDL 37 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (174)
.+|.|.+-..|.|..=.|+|||+++.+....
T Consensus 4 ~~MAKR~A~~qLT~dNwd~eed~ee~GtF~~ 34 (114)
T 3tj3_C 4 GSMAKRNAEKELTDRNWDQEDEAEEVGTFSM 34 (114)
T ss_dssp SCCCCCCCSSCCCTTTSSSCCCCCCCCCCCB
T ss_pred hhhhhhccccccccccccccccccccCCccc
Confidence 4688888888888765566666655555544
Done!