Query 030600
Match_columns 174
No_of_seqs 80 out of 82
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 02:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g1p_A Conotoxin EVIA; three d 36.7 13 0.00044 22.8 1.1 12 1-12 19-30 (33)
2 3d9j_A RNA-binding protein 16; 16.6 68 0.0023 24.1 2.0 20 155-174 105-124 (145)
3 3h4c_A Transcription factor TF 15.7 49 0.0017 28.4 1.1 13 148-160 70-82 (260)
4 2km4_A Regulator of TY1 transp 14.8 72 0.0025 23.7 1.7 18 157-174 103-120 (142)
5 2auv_A Potential NAD-reducing 14.7 63 0.0022 21.5 1.3 16 5-21 51-66 (85)
6 1ytv_M V1AR, vasopressin V1A r 13.4 1.3E+02 0.0044 21.9 2.7 40 6-47 27-70 (84)
7 3lx4_A Fe-hydrogenase; HYDA, H 12.4 52 0.0018 30.0 0.4 15 1-15 375-389 (457)
8 2k53_A A3DK08 protein; NESG, C 12.4 67 0.0023 21.9 0.9 9 2-11 26-34 (76)
9 4fu3_A Regulation of nuclear P 12.3 1.1E+02 0.0037 21.9 2.0 16 159-174 103-118 (135)
10 2exu_A Transcription initiatio 12.1 79 0.0027 25.7 1.4 13 152-164 178-190 (200)
No 1
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=36.72 E-value=13 Score=22.83 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.7
Q ss_pred CCCCCCcccCCC
Q 030600 1 MHGSSGCLGCFI 12 (174)
Q Consensus 1 ~~~~~gC~Gc~~ 12 (174)
+.|+|.|+|-|+
T Consensus 19 lccsgacvgvca 30 (33)
T 1g1p_A 19 LCCSGACVGVCA 30 (33)
T ss_dssp CBTTBCBSSBBC
T ss_pred cccCCceeEEee
Confidence 468899999885
No 2
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=16.63 E-value=68 Score=24.09 Aligned_cols=20 Identities=5% Similarity=0.429 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHhhcCCCC
Q 030600 155 PLSEMVDFLVDIWEQEGMYD 174 (174)
Q Consensus 155 PL~EMVDfLVDiWE~EGLyd 174 (174)
....-+.=|++||++-++|+
T Consensus 105 ~~r~kl~rLl~iW~~r~vF~ 124 (145)
T 3d9j_A 105 DDKSKIVRVLNLWQKNNVFK 124 (145)
T ss_dssp GGHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 46677888999999999884
No 3
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=15.75 E-value=49 Score=28.36 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=10.4
Q ss_pred CCCCCCCChHHHH
Q 030600 148 KPFPQPIPLSEMV 160 (174)
Q Consensus 148 kpFpqPIPL~EMV 160 (174)
+--.+||||+||-
T Consensus 70 e~~~~PiplaE~r 82 (260)
T 3h4c_A 70 EEAQQPLPLAEVR 82 (260)
T ss_dssp HHTTCCCCHHHHH
T ss_pred HHcCCCccHHHHH
Confidence 4457999999993
No 4
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=14.78 E-value=72 Score=23.69 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 030600 157 SEMVDFLVDIWEQEGMYD 174 (174)
Q Consensus 157 ~EMVDfLVDiWE~EGLyd 174 (174)
..-|.=|++|||+-+.|+
T Consensus 103 ~~kv~rvl~iWeer~vf~ 120 (142)
T 2km4_A 103 KKKLSRVVNILKERNIFS 120 (142)
T ss_dssp HHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHhhccCCcC
Confidence 344666789999999985
No 5
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=14.72 E-value=63 Score=21.53 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=11.2
Q ss_pred CCcccCCCCCCcccccC
Q 030600 5 SGCLGCFIRPPVNTSAS 21 (174)
Q Consensus 5 ~gC~Gc~~kp~~~~~vd 21 (174)
.||+|.|...|.+ .|+
T Consensus 51 ~~ClG~C~~~P~v-~V~ 66 (85)
T 2auv_A 51 LRCVGGCALAPIV-MVG 66 (85)
T ss_dssp SSSSSSCTTSCCC-EEG
T ss_pred CCccCcCCCCCEE-EEC
Confidence 4899999876643 444
No 6
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=13.44 E-value=1.3e+02 Score=21.91 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=20.6
Q ss_pred CcccCCCCCCcccccCCCcccCCCCCc----ccCCCCCCCCccccc
Q 030600 6 GCLGCFIRPPVNTSASNLSKELGVPGR----SAGKRSISEDFWTTS 47 (174)
Q Consensus 6 gC~Gc~~kp~~~~~vd~~sk~l~~q~~----~~~k~~~s~dfWsts 47 (174)
.||-||.++..... -|.|-+ ..+-. ....|..+-+.|-.+
T Consensus 27 r~fpCC~~~k~~~~-kEdSdS-ssRRtTllT~srsPt~s~~~wk~~ 70 (84)
T 1ytv_M 27 GSFPCCQNMKEKFN-KEDTDS-MSRRQTFYSNNRSPTNSTGMWKDS 70 (84)
T ss_pred hccccccCccccCC-ccCCCc-ccccceeeeccCCCCCCccccccC
Confidence 79999988774322 222222 11111 124466667777543
No 7
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii}
Probab=12.44 E-value=52 Score=30.03 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=11.5
Q ss_pred CCCCCCcccCCCCCC
Q 030600 1 MHGSSGCLGCFIRPP 15 (174)
Q Consensus 1 ~~~~~gC~Gc~~kp~ 15 (174)
|+|-|||+|-=..|.
T Consensus 375 MACPgGCi~GgGQp~ 389 (457)
T 3lx4_A 375 MACPAGCVGGGGQPR 389 (457)
T ss_dssp ESSTTCGGGCTTSCC
T ss_pred CCCCccccCCccccc
Confidence 789999998655554
No 8
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=12.42 E-value=67 Score=21.91 Aligned_cols=9 Identities=56% Similarity=1.331 Sum_probs=6.3
Q ss_pred CCCCCcccCC
Q 030600 2 HGSSGCLGCF 11 (174)
Q Consensus 2 ~~~~gC~Gc~ 11 (174)
|+|. |+||=
T Consensus 26 ~G~~-C~gC~ 34 (76)
T 2k53_A 26 NGMH-CLGCP 34 (76)
T ss_dssp TTCC-CCSSC
T ss_pred cCCC-CCCCC
Confidence 4665 88875
No 9
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=12.30 E-value=1.1e+02 Score=21.88 Aligned_cols=16 Identities=25% Similarity=0.808 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhcCCCC
Q 030600 159 MVDFLVDIWEQEGMYD 174 (174)
Q Consensus 159 MVDfLVDiWE~EGLyd 174 (174)
-|.=|+++|++-++|+
T Consensus 103 kl~kll~iW~~r~vf~ 118 (135)
T 4fu3_A 103 PLERLLNIWQERSVYG 118 (135)
T ss_dssp HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhcCCCCcC
Confidence 3455899999999985
No 10
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=12.11 E-value=79 Score=25.71 Aligned_cols=13 Identities=31% Similarity=0.375 Sum_probs=11.8
Q ss_pred CCCChHHHHHHHH
Q 030600 152 QPIPLSEMVDFLV 164 (174)
Q Consensus 152 qPIPL~EMVDfLV 164 (174)
.-||..||.|+|.
T Consensus 178 ~lVPi~Em~dll~ 190 (200)
T 2exu_A 178 LLIPVQELPLLLK 190 (200)
T ss_dssp EECCGGGHHHHHC
T ss_pred eEecHHHhHhHhh
Confidence 7899999999984
Done!