Query 030600
Match_columns 174
No_of_seqs 80 out of 82
Neff 3.2
Searched_HMMs 13730
Date Tue Mar 26 02:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030600.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030600hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g1pa_ g.3.6.1 (A:) Conotoxin 37.7 5.7 0.00041 22.8 1.1 12 1-12 19-30 (32)
2 d2p5zx2 b.106.1.1 (X:15-201) H 24.0 11 0.00082 27.2 1.0 14 160-173 156-169 (187)
3 d2idba2 d.333.1.1 (A:326-491) 16.1 28 0.0021 25.2 1.7 26 148-173 140-166 (166)
4 d1ug7a_ a.24.24.1 (A:) Domain 15.8 26 0.0019 25.5 1.4 20 138-157 103-125 (128)
5 d1t56a2 a.121.1.1 (A:95-214) E 11.9 65 0.0047 21.6 2.5 72 92-169 41-115 (120)
6 d3c8ya1 c.96.1.1 (A:210-574) F 11.7 35 0.0025 27.4 1.2 14 1-14 288-301 (365)
7 d1uv7a_ d.67.4.1 (A:) General 11.1 79 0.0057 20.3 2.6 21 152-172 33-53 (80)
8 d1wiga1 g.39.1.3 (A:1-32) Acti 9.9 47 0.0034 18.9 0.9 9 3-11 4-12 (32)
9 d1eh9a2 b.71.1.1 (A:491-557) G 9.4 39 0.0029 22.1 0.5 14 142-155 40-53 (67)
10 d2cr8a1 g.41.11.1 (A:8-48) MDM 9.1 50 0.0036 19.8 0.9 18 40-57 1-18 (41)
No 1
>d1g1pa_ g.3.6.1 (A:) Conotoxin {Conus ermineus, E VIa [TaxId: 55423]}
Probab=37.70 E-value=5.7 Score=22.80 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.6
Q ss_pred CCCCCCcccCCC
Q 030600 1 MHGSSGCLGCFI 12 (174)
Q Consensus 1 ~~~~~gC~Gc~~ 12 (174)
+.|+|.|+|-|+
T Consensus 19 lccsgacvgvca 30 (32)
T d1g1pa_ 19 LCCSGACVGVCA 30 (32)
T ss_dssp CBTTBCBSSBBC
T ss_pred ccccCceeEEec
Confidence 468899999885
No 2
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393 {Escherichia coli o6 [TaxId: 217992]}
Probab=24.03 E-value=11 Score=27.21 Aligned_cols=14 Identities=14% Similarity=0.586 Sum_probs=12.9
Q ss_pred HHHHHHHHhhcCCC
Q 030600 160 VDFLVDIWEQEGMY 173 (174)
Q Consensus 160 VDfLVDiWE~EGLy 173 (174)
-|||..++|+||+|
T Consensus 156 ~~Fl~RL~ee~Gi~ 169 (187)
T d2p5zx2 156 LTFVSRLLSEVGIW 169 (187)
T ss_dssp HHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhcCCE
Confidence 48999999999987
No 3
>d2idba2 d.333.1.1 (A:326-491) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
Probab=16.06 E-value=28 Score=25.18 Aligned_cols=26 Identities=19% Similarity=0.639 Sum_probs=21.2
Q ss_pred CCCCCCCCh-HHHHHHHHHHHhhcCCC
Q 030600 148 KPFPQPIPL-SEMVDFLVDIWEQEGMY 173 (174)
Q Consensus 148 kpFpqPIPL-~EMVDfLVDiWE~EGLy 173 (174)
+.||+++.. +|+.+-..+.|++=|||
T Consensus 140 ~~~p~~~~~~~e~~~~v~~~W~elGl~ 166 (166)
T d2idba2 140 REWGRPIKKDPDVVAHIDAIWDELAIF 166 (166)
T ss_dssp SCCCEECCCCHHHHHHHHHHTTTSCCC
T ss_pred ccCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 457777654 58999999999999997
No 4
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.84 E-value=26 Score=25.51 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=15.6
Q ss_pred hhhhhhcCCCCCCC---CCCChH
Q 030600 138 ATYESLLGSNKPFP---QPIPLS 157 (174)
Q Consensus 138 aTYe~LLgsnkpFp---qPIPL~ 157 (174)
.+-.+||..|+||| +||||.
T Consensus 103 piLknll~~~keFP~~v~~~~~~ 125 (128)
T d1ug7a_ 103 PILKNILTYNKEFPFDVQPISGP 125 (128)
T ss_dssp HHHHTTTTCCSCCSSCCCCSSCC
T ss_pred HHHHHHhhcCCCCCcccccCCcc
Confidence 44567899999998 788875
No 5
>d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=11.88 E-value=65 Score=21.64 Aligned_cols=72 Identities=25% Similarity=0.416 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhcCCCCCc---cccccCCCcccchhhhhhhhhhccccchhhhhhcCCCCCCCCCCChHHHHHHHHHHHh
Q 030600 92 FLLWNQTRQRWIGNKKAEN---RTHQVREPKLNTHCLCLVKKFWLCSWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWE 168 (174)
Q Consensus 92 l~~W~q~R~qWvg~~~~~~---~~~~~reP~l~~~~~~l~~~~w~~swnaTYe~LLgsnkpFpqPIPL~EMVDfLVDiWE 168 (174)
-.+|++.|+.|+......= +..-...+.++. ..++..+-.=--...|..+.+ .+ ..++..+.|+-|..||-
T Consensus 41 ~~~w~~~~~~~i~~ia~~I~~~q~~G~a~~~ld~--~~~A~AL~~M~er~~~~~~~~-~~---~~~d~e~~v~tL~~iW~ 114 (120)
T d1t56a2 41 AELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPA--HELATALNLMNERTLFASFAG-EQ---PSVPEARVLDTLVHIWV 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSCH--HHHHHHHHHHHHHHHHHHHHT-CS---SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCH--HHHHHHHHHHHHHHHHHHHcc-CC---CCCCHHHHHHHHHHHHH
Confidence 4689999999998642111 111111223311 112222211111233444433 22 22789999999999995
Q ss_pred h
Q 030600 169 Q 169 (174)
Q Consensus 169 ~ 169 (174)
.
T Consensus 115 ~ 115 (120)
T d1t56a2 115 T 115 (120)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]}
Probab=11.74 E-value=35 Score=27.38 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=10.6
Q ss_pred CCCCCCcccCCCCC
Q 030600 1 MHGSSGCLGCFIRP 14 (174)
Q Consensus 1 ~~~~~gC~Gc~~kp 14 (174)
|+|-|||++--..|
T Consensus 288 mACpgGCinGgGq~ 301 (365)
T d3c8ya1 288 MACHGGCVNGGGQP 301 (365)
T ss_dssp ESSTTSGGGCTTSC
T ss_pred ecCCCCCcCCCCcC
Confidence 78999999765444
No 7
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]}
Probab=11.13 E-value=79 Score=20.28 Aligned_cols=21 Identities=33% Similarity=0.827 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHHHHHhhcCC
Q 030600 152 QPIPLSEMVDFLVDIWEQEGM 172 (174)
Q Consensus 152 qPIPL~EMVDfLVDiWE~EGL 172 (174)
.++|...++..|.++-++.|+
T Consensus 33 d~v~F~~ll~WL~~L~~~~Gi 53 (80)
T d1uv7a_ 33 QPLPFSQLVSWIAYLQERQGV 53 (80)
T ss_dssp CCBCHHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHhcCCe
Confidence 478889999999999999886
No 8
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.88 E-value=47 Score=18.89 Aligned_cols=9 Identities=67% Similarity=1.224 Sum_probs=6.5
Q ss_pred CCCCcccCC
Q 030600 3 GSSGCLGCF 11 (174)
Q Consensus 3 ~~~gC~Gc~ 11 (174)
+++||-+|=
T Consensus 4 gssgC~~C~ 12 (32)
T d1wiga1 4 GSSGCDSCE 12 (32)
T ss_dssp SCCSCSSSC
T ss_pred ccchhhhhh
Confidence 577888863
No 9
>d1eh9a2 b.71.1.1 (A:491-557) Glycosyltrehalose trehalohydrolase {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=9.38 E-value=39 Score=22.11 Aligned_cols=14 Identities=57% Similarity=0.790 Sum_probs=11.3
Q ss_pred hhcCCCCCCCCCCC
Q 030600 142 SLLGSNKPFPQPIP 155 (174)
Q Consensus 142 ~LLgsnkpFpqPIP 155 (174)
=||++|..||+-|-
T Consensus 40 LvlsSn~sFP~~I~ 53 (67)
T d1eh9a2 40 LLLSSNNSFPQHIE 53 (67)
T ss_dssp CCEESSSCSCSBCC
T ss_pred EEEecCCcCchhhh
Confidence 46788889999884
No 10
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.08 E-value=50 Score=19.75 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=14.8
Q ss_pred CCCccccccccccCcccc
Q 030600 40 SEDFWTTSTCDMDNSAVQ 57 (174)
Q Consensus 40 s~dfWsts~~~mdns~~~ 57 (174)
|+|+|.=+.|++-|+-++
T Consensus 1 seD~WkC~~C~~~N~Pl~ 18 (41)
T d2cr8a1 1 SEDEWQCTECKKFNSPSK 18 (41)
T ss_dssp CSCCEECSSSCCEECSSC
T ss_pred CCcceecCcccccCCcch
Confidence 689999999988887664
Done!