BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030601
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JM76|ARPC3_MOUSE Actin-related protein 2/3 complex subunit 3 OS=Mus musculus
GN=Arpc3 PE=1 SV=3
Length = 178
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
Query: 2 VYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
YHSS +D + TK G LLPL+S KGPAP +D TDIVDEAI +F+ANVFF+N++
Sbjct: 3 AYHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYE 59
Query: 61 IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
IK+ AD+ LIY+T YI+ LK+L+ + ++G K + LG+ P+PGEP FP ++A
Sbjct: 60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119
Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNG-TPNKWWLAFAKRKFMN 170
P S++E E+ R YL+Q+R+ET RL + P P+KWW F KR+FMN
Sbjct: 120 PASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170
>sp|O15145|ARPC3_HUMAN Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens
GN=ARPC3 PE=1 SV=3
Length = 178
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 5/171 (2%)
Query: 2 VYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
YHSS +D + TK G LLP++S KGPAP +D TDIVDEAI +F+ANVFF+N++
Sbjct: 3 AYHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYE 59
Query: 61 IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
IK+ AD+ LIY+T YI+ LK+L+ + ++G K + LG+ P+PGEP FP ++A
Sbjct: 60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119
Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
P +++E E+ R YL+Q+R+ET RL + P N P+KWW F KR+FMN
Sbjct: 120 PANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170
>sp|Q3T035|ARPC3_BOVIN Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3
PE=1 SV=3
Length = 178
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 5/171 (2%)
Query: 2 VYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
YHSS +D + TK G LLP++S KGPAP +D TDIVDEAI +F+ANVFF+N++
Sbjct: 3 AYHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYE 59
Query: 61 IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
IK+ AD+ LIY+T YI+ LK+L+ + ++G K + LG+ P+PGEP FP ++A
Sbjct: 60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119
Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
P +++E E+ R YL+Q+R+ET RL + P N P+KWW F KR+FMN
Sbjct: 120 PANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170
>sp|O96624|ARPC3_DICDI Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium
discoideum GN=arcC PE=1 SV=1
Length = 174
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 3/172 (1%)
Query: 1 MVYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNF 59
MVYHS F DE + G P+LPLK+ KGPAP D + DI+DEA+ F+AN+ FRNF
Sbjct: 1 MVYHSQFNDESAGFRLVGNVPILPLKTTHKGPAPKGDANSVDIIDEALDLFKANILFRNF 60
Query: 60 DIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFA 119
+++ + D++LIYLT YI L ++ A+ KA+ + E+ +PGE FP GL
Sbjct: 61 EVQGNGDRVLIYLTLYITKCLLKIAPMNK-ADAEKALFLIAQEQFSIPGESAFPLGGLVT 119
Query: 120 LPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWWLAFAKRKFMN 170
+P ++ A+ R Y Q+R E RL Y + NKWW+ F+KRKF+N
Sbjct: 120 VPNTRDAADTLRQYFTQLRLELGVRLCQRVYAVDPSKANKWWICFSKRKFLN 171
>sp|Q9Y7J4|ARPC3_SCHPO Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=arc3 PE=1 SV=1
Length = 174
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 2 VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
YHSSF+ V +LPLK+ +GPA +D+ + DI+DE I FRAN FFRNF+I
Sbjct: 3 AYHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEI 62
Query: 62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
K AD+ LIY T +I+ L R+ G + + + +L LE +PG FP L+A P
Sbjct: 63 KGPADRTLIYGTLFISECLGRVNG-LNYRDAERQLNSLALENFSIPGSAGFPLNALYAPP 121
Query: 122 QSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 170
S ++AE+ R YL Q R+E + RLLS Y P+KWW F+KR+FMN
Sbjct: 122 LSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMN 171
>sp|Q9XWV3|ARPC3_CAEEL Probable actin-related protein 2/3 complex subunit 3
OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1
Length = 183
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 104/173 (60%), Gaps = 6/173 (3%)
Query: 2 VYHSSFVDEEGVTKACGCPL--LPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNF 59
YHS F E V + LP++++ KGPAP ++QD DI+DEA+T+F+ N+FFR F
Sbjct: 3 AYHSKFDTELKVLPLGNTNMGKLPIRTNFKGPAPQTNQD--DIIDEALTYFKPNIFFREF 60
Query: 60 DIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTK-AIINLGLEKVPVPGEPNFPFPGLF 118
+IK AD+ +IYL FYI L++L+ G K +P+PGE FP ++
Sbjct: 61 EIKGPADRTMIYLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNSMY 120
Query: 119 ALPQSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 170
PQS+ + + R YL+QIR+E RL +A+ P P+KWWL FA+R+FM+
Sbjct: 121 KAPQSKPDEDEMRAYLQQIRQEIGARLCDLAFPDPQDRPSKWWLCFARRRFMD 173
>sp|Q05933|ARPC3_YEAST Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC18 PE=1
SV=1
Length = 178
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
YHS+F + + G LLPL + +GPA S+ D DI+DE + FRAN FF+NF+I
Sbjct: 4 YHSTFPVDPNTDRMVGNFALLPLNTKFRGPAYPSNSDY-DIIDECLDLFRANSFFKNFEI 62
Query: 62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
KS AD++LIY +IN L L+ + E K + N+ L+ +PG P FP ++ +P
Sbjct: 63 KSPADRVLIYGILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFPLNNVYQVP 122
Query: 122 -QSQKEAELFRNYLKQIREETSGRLLSVAYRPNGT---PNKWWLAFAKRKFMN 170
Q +L + Y++Q R+E + RLL Y + P+K+WLAF +R+FMN
Sbjct: 123 VQDHNSMDLLKTYIQQFRQELAMRLLERVYSSTDSKEYPSKFWLAFTRRRFMN 175
>sp|O15604|ARPC3_ENTHI Probable actin-related protein 2/3 complex subunit 3 (Fragment)
OS=Entamoeba histolytica PE=2 SV=1
Length = 128
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 3 YHSSFVDEEGVTKACGCPLLPLKSHIK-GPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
YHS +D++ V KA PL+ K+ +K P D DIVDEAIT+++ANVF++N D+
Sbjct: 9 YHSE-LDKDIVQKAGNFPLMQFKTKVKVNPKFLLKGDDMDIVDEAITYYKANVFYKNLDM 67
Query: 62 K-SSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGL 117
ADKLL YL FY+ L G RT + K +L +E +PG+ F G+
Sbjct: 68 SICEADKLLAYLMFYLQSLLLTFTG-RTKVDCDKMAFSLAIENFGLPGDGKFCLGGI 123
>sp|Q6L016|KTHY_PICTO Probable thymidylate kinase OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=tmk PE=3
SV=1
Length = 202
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 68 LLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEA 127
L+IYL +ALKRL R+ + T A L + K V ++ F G+ +P + A
Sbjct: 125 LIIYLKIDPGIALKRLNLRKNEKKNTDAFERLEMLK-NVSKYYDYIFSGIIKIPVIKINA 183
Query: 128 ELFRNYLKQ 136
E+ NY+K
Sbjct: 184 EMEYNYVKD 192
>sp|Q0V8S9|CNTP5_CHICK Contactin-associated protein-like 5 OS=Gallus gallus GN=CNTNAP5
PE=2 SV=1
Length = 1305
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 98 NLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETS-----GRLLSVAYRP 152
N GL +V G P P+ F S ++ E N + +E + RLL+ P
Sbjct: 636 NTGLTRVQGAG-PEKPYTMSFNYNSSAEQLEAVINSAEYCEQEAAYHCKKSRLLNT---P 691
Query: 153 NGTPNKWWLAFAKRKFM 169
NG P WW+ A K +
Sbjct: 692 NGIPFAWWVGRANEKHL 708
>sp|P50996|ATP4A_CANFA Potassium-transporting ATPase alpha chain 1 OS=Canis familiaris
GN=ATP4A PE=2 SV=3
Length = 1034
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 48 TFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKV 104
TF RA VFF + + LL +T +++ KRL + + + +A+ LG + V
Sbjct: 326 TFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSKSV 382
>sp|P20648|ATP4A_HUMAN Potassium-transporting ATPase alpha chain 1 OS=Homo sapiens
GN=ATP4A PE=2 SV=5
Length = 1035
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 48 TFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKV 104
TF RA VFF + + LL +T +++ KRL + + + +A+ LG V
Sbjct: 327 TFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSV 383
>sp|P27112|ATP4A_RABIT Potassium-transporting ATPase alpha chain 1 OS=Oryctolagus
cuniculus GN=ATP4A PE=2 SV=3
Length = 1035
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 48 TFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKV 104
TF RA VFF + + LL +T +++ KRL + + + +A+ LG V
Sbjct: 327 TFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSV 383
>sp|P19156|ATP4A_PIG Potassium-transporting ATPase alpha chain 1 OS=Sus scrofa GN=ATP4A
PE=1 SV=3
Length = 1034
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 48 TFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKV 104
TF RA VFF + + LL +T +++ KRL + + + +A+ LG V
Sbjct: 326 TFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSV 382
>sp|P09626|ATP4A_RAT Potassium-transporting ATPase alpha chain 1 OS=Rattus norvegicus
GN=Atp4a PE=2 SV=3
Length = 1033
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 48 TFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKV 104
TF RA VFF + + LL +T +++ KRL + + + +A+ LG V
Sbjct: 325 TFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSV 381
>sp|Q64436|ATP4A_MOUSE Potassium-transporting ATPase alpha chain 1 OS=Mus musculus
GN=Atp4a PE=1 SV=3
Length = 1033
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 48 TFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKV 104
TF RA VFF + + LL +T +++ KRL + + + +A+ LG V
Sbjct: 325 TFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSV 381
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,048,468
Number of Sequences: 539616
Number of extensions: 2652472
Number of successful extensions: 5521
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5486
Number of HSP's gapped (non-prelim): 18
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)