Query 030601
Match_columns 174
No_of_seqs 114 out of 163
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 02:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8k_E P21, ARP2/3 complex 21 100.0 8E-100 3E-104 622.6 16.8 171 1-173 2-173 (178)
2 3dwl_E Actin-related protein 2 100.0 9E-100 3E-104 620.5 -5.1 171 2-173 3-174 (174)
3 1f8p_A Neuropeptide Y (PNPY); 56.5 4.4 0.00015 25.4 1.3 22 121-142 8-29 (37)
4 4eq9_A ABC transporter substra 53.5 57 0.0019 23.7 7.3 78 76-153 151-237 (246)
5 4afm_A Endoglucanase CEL5A; hy 50.1 2.4 8E-05 32.7 -0.9 17 56-72 42-61 (134)
6 2ypj_A Eccel5A, endoglucanase 47.4 2.4 8E-05 33.3 -1.3 17 56-72 67-86 (155)
7 4ba6_A Endoglucanase CEL5A; ca 47.3 2.4 8E-05 33.0 -1.3 17 56-72 48-67 (144)
8 2l60_A Peptide YY; GPCR ligand 47.3 5 0.00017 25.7 0.5 21 122-142 13-33 (41)
9 2fok_A R.FOKI, FOKI restrictio 38.6 26 0.00089 33.0 4.0 32 124-165 479-510 (579)
10 3r6f_A HIT family protein; str 34.0 32 0.0011 25.1 3.1 32 107-142 103-134 (135)
11 2l2l_A Transcriptional repress 33.4 34 0.0012 22.0 2.7 18 123-143 2-19 (43)
12 2pco_A Latarcin-1, LTC-1; cont 32.2 16 0.00053 21.3 0.9 19 128-146 5-23 (26)
13 3ksv_A Uncharacterized protein 29.6 46 0.0016 24.9 3.5 32 107-142 116-147 (149)
14 2bf9_A Pancreatic hormone; tur 29.1 35 0.0012 21.2 2.2 22 121-142 8-29 (36)
15 3fzv_A Probable transcriptiona 28.2 31 0.0011 26.3 2.3 20 78-97 10-29 (306)
16 1buu_A Protein (mannose-bindin 27.9 51 0.0018 24.3 3.4 38 105-142 1-40 (168)
17 4f3p_A Glutamine-binding perip 27.8 42 0.0014 24.9 2.9 77 76-153 160-244 (249)
18 3tql_A Arginine-binding protei 25.4 1.5E+02 0.0051 20.9 5.5 75 76-150 140-227 (227)
19 2vkj_A TM1634; membrane protei 24.7 32 0.0011 25.7 1.7 43 41-85 55-105 (106)
20 1ii5_A SLR1257 protein; membra 21.2 91 0.0031 22.2 3.6 80 76-156 144-231 (233)
21 3hv1_A Polar amino acid ABC up 21.0 2.6E+02 0.0088 20.7 6.7 34 120-153 216-250 (268)
22 1j6r_A Methionine synthase; st 21.0 7.7 0.00026 31.6 -2.5 40 40-82 51-90 (214)
No 1
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=100.00 E-value=7.8e-100 Score=622.56 Aligned_cols=171 Identities=45% Similarity=0.876 Sum_probs=164.7
Q ss_pred CcccccCCCCCCcceeeCccccccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehHhHHHHHHHHH
Q 030601 1 MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVAL 80 (174)
Q Consensus 1 mAYHS~f~~~~~~~~~~g~alLPlrt~~rGPAp~~~~~~~DIIDEal~~FrAN~fFrnfEIKg~aDR~LIYltLyi~~CL 80 (174)
=||||+|++++. +.+||||||||||++|||||+ +++++|||||||+|||||||||||||||+||||||||||||+|||
T Consensus 2 PAYHS~f~~~~~-~~vgn~~lLPlrt~~rGPAp~-~~~~~DIiDEal~~FraNvfFrnfeIkg~ADR~LIYltlyi~eCL 79 (178)
T 1k8k_E 2 PAYHSSLMDPDT-KLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECL 79 (178)
T ss_dssp CCCCCCCCCTTC-EEETTEEECCBCCSSCSSCCB-CCSSCCHHHHHHHHHHHHTTCSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred Ccccchhccccc-ceEcceeEEeeeccCCCCCCC-CCCccchHHHHHHHHHhhhhhhccccCCCCceEeeeHHHHHHHHH
Confidence 099999998744 568889999999999999998 567899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHhcccCCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCchh
Q 030601 81 KRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKW 159 (174)
Q Consensus 81 kkl~~~~~~~ea~k~l~~la~~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~Q~RqEl~~RL~ervy~~~-~~psKw 159 (174)
|||++|++++||+|+|+++|+++|+||||+|||||++|++|+|++|+|+||+||+|+|||+|.|||||||+++ ++||||
T Consensus 80 kkl~~~~~k~ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~~~~~psKw 159 (178)
T 1k8k_E 80 KKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKW 159 (178)
T ss_dssp HHHTSCCSHHHHHHHHHHHHHSCCCCTTSTTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSSSCBCHH
T ss_pred HHhhcCCCHHHHHHHHHHHhhhcCCCCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999977 899999
Q ss_pred hhhhcccccccccC
Q 030601 160 WLAFAKRKFMNIIV 173 (174)
Q Consensus 160 Wm~FaKRkFM~ksL 173 (174)
||||+|||||||||
T Consensus 160 Wl~FaKRkFM~ksl 173 (178)
T 1k8k_E 160 WTCFVKRQFMNKSL 173 (178)
T ss_dssp HHTTTTCCGGGCCC
T ss_pred ceeehhhhhhcccc
Confidence 99999999999998
No 2
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-100 Score=620.49 Aligned_cols=171 Identities=43% Similarity=0.806 Sum_probs=63.0
Q ss_pred cccccCCCCCCcceeeCccccccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehHhHHHHHHHHHH
Q 030601 2 VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALK 81 (174)
Q Consensus 2 AYHS~f~~~~~~~~~~g~alLPlrt~~rGPAp~~~~~~~DIIDEal~~FrAN~fFrnfEIKg~aDR~LIYltLyi~~CLk 81 (174)
||||+|+++++++.+||||||||||++|||||+++++++|||||||+|||||||||||||||+|||||||+||||+|||+
T Consensus 3 AYHS~f~~~~~~~~iGn~~lLPlrt~~rGPA~~~~~~~~DIiDEal~~FrANvfFrnfeIkg~ADR~LIYltlyi~~CLk 82 (174)
T 3dwl_E 3 AYHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIKGPADRTLIYGTLFISECLG 82 (174)
T ss_dssp -----------------------------------------CHHHHHHHHHHTTCCCC-----CTHHHHHHHHHHHSCC-
T ss_pred CccccccCCCcceeEccceeeeecccCCCCCCCCCCCCcChHHHHHHHHHhhhhhhccccCCCCceeeehHHHHHHHHHH
Confidence 89999998766667778999999999999999987778999999999999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHhcccCCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCchhh
Q 030601 82 RLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWW 160 (174)
Q Consensus 82 kl~~~~~~~ea~k~l~~la~~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~Q~RqEl~~RL~ervy~~~-~~psKwW 160 (174)
||++| +++||+|+|+++|+++|+||||+|||||++|++|+|++|+|+||+||+|+|||+|.|||||||+++ ++|||||
T Consensus 83 kl~~~-sk~ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~~~~kpsKwW 161 (174)
T 3dwl_E 83 RVNGL-NYRDAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWW 161 (174)
T ss_dssp -----------CCCCC---------------------------------------CCGGGTTTTTC-----------CTT
T ss_pred HHhcc-CHHHHHHHHHHHHHhcCCCCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHH
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999877 8999999
Q ss_pred hhhcccccccccC
Q 030601 161 LAFAKRKFMNIIV 173 (174)
Q Consensus 161 m~FaKRkFM~ksL 173 (174)
|||+|||||||||
T Consensus 162 l~F~KRkFM~ksL 174 (174)
T 3dwl_E 162 TCFSKRRFMNKAL 174 (174)
T ss_dssp SGGGGCCGGGC--
T ss_pred HHHHHHhhhcccC
Confidence 9999999999997
No 3
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=56.49 E-value=4.4 Score=25.43 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=17.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q 030601 121 PQSQKEAELFRNYLKQIREETS 142 (174)
Q Consensus 121 P~~~~e~d~lR~Yl~Q~RqEl~ 142 (174)
|++....|.|++|+++||+=+.
T Consensus 8 Pg~~a~pEela~Y~~~Lr~Yin 29 (37)
T 1f8p_A 8 PGEDAPAEDLARYYSALRHYIN 29 (37)
T ss_dssp CCSSCTTTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 5566666889999999998654
No 4
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=53.54 E-value=57 Score=23.68 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=48.2
Q ss_pred HHHHHHHhhcCCC------HHHHHHHHHHhcccCCCCCCCCCC--CCCccccCCCChhHHHHHHHHHHHHHHH-HHHHHH
Q 030601 76 INVALKRLEGRRT------LAEGTKAIINLGLEKVPVPGEPNF--PFPGLFALPQSQKEAELFRNYLKQIREE-TSGRLL 146 (174)
Q Consensus 76 i~~CLkkl~~~~~------~~ea~k~l~~la~~~F~iPGd~gF--pLn~~y~~P~~~~e~d~lR~Yl~Q~RqE-l~~RL~ 146 (174)
..+|++.|....- ...+...+.....+++.+-+.+.. |-..+...+.++.=.+.+.+.|.+++++ .-.+|+
T Consensus 151 ~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~ 230 (246)
T 4eq9_A 151 FQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKLS 230 (246)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4677777776533 344555555554444433222221 2112333446666779999999999887 778999
Q ss_pred hhhcCCC
Q 030601 147 SVAYRPN 153 (174)
Q Consensus 147 ervy~~~ 153 (174)
++.|..+
T Consensus 231 ~k~~~~~ 237 (246)
T 4eq9_A 231 KQFFGDT 237 (246)
T ss_dssp HHHHSSC
T ss_pred HHhcCCC
Confidence 9999765
No 5
>4afm_A Endoglucanase CEL5A; hydrolase, carbohydrate binding module, family 5 glycoside H; HET: MSE; 1.25A {Eubacterium cellulosolvens}
Probab=50.12 E-value=2.4 Score=32.65 Aligned_cols=17 Identities=53% Similarity=0.815 Sum_probs=14.8
Q ss_pred ccccccC---CCCceehHhH
Q 030601 56 FRNFDIK---SSADKLLIYL 72 (174)
Q Consensus 56 FrnfEIK---g~aDR~LIYl 72 (174)
=|||||| +.||-|||+-
T Consensus 42 nknfeikvdy~gadivlifa 61 (134)
T 4afm_A 42 NKNFEIKVDYSGADIVLIFA 61 (134)
T ss_dssp TSCEEEEEEEESSCEEEEEE
T ss_pred CcCeEEEEecCCCcEEEEEe
Confidence 4899999 8899999973
No 6
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=47.43 E-value=2.4 Score=33.31 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=14.9
Q ss_pred ccccccC---CCCceehHhH
Q 030601 56 FRNFDIK---SSADKLLIYL 72 (174)
Q Consensus 56 FrnfEIK---g~aDR~LIYl 72 (174)
=|||||| +.||-|||+-
T Consensus 67 nknfeikvdy~gadivlifa 86 (155)
T 2ypj_A 67 NKNFEIKVDYNGADIVLIFA 86 (155)
T ss_dssp TSCEEEEEEEEESCEEEEEE
T ss_pred CcCeEEEEecCCCcEEEEEe
Confidence 4899999 7899999974
No 7
>4ba6_A Endoglucanase CEL5A; carbohydrate-binding protein, plant cell WALL degradation, beta-jelly roll; 1.42A {Eubacterium cellulosolvens}
Probab=47.34 E-value=2.4 Score=32.97 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=14.9
Q ss_pred ccccccC---CCCceehHhH
Q 030601 56 FRNFDIK---SSADKLLIYL 72 (174)
Q Consensus 56 FrnfEIK---g~aDR~LIYl 72 (174)
=|||||| +.||-|||+-
T Consensus 48 nknfeikvdy~gadivlifa 67 (144)
T 4ba6_A 48 NKNFEIKVDYNGADIVLIFA 67 (144)
T ss_dssp TSCEEEEEEEEESCEEEEEE
T ss_pred CcCeEEEEecCCCcEEEEEe
Confidence 4899999 7899999974
No 8
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=47.26 E-value=5 Score=25.70 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=16.1
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q 030601 122 QSQKEAELFRNYLKQIREETS 142 (174)
Q Consensus 122 ~~~~e~d~lR~Yl~Q~RqEl~ 142 (174)
++....|.|++|+.+||+=+.
T Consensus 13 g~~aspEela~Y~~~Lr~Yin 33 (41)
T 2l60_A 13 LKKLSPEELNRYYASLRHYLN 33 (41)
T ss_dssp HTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 344456899999999998654
No 9
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} SCOP: a.4.5.12 a.4.5.12 a.4.5.12 c.52.1.12 PDB: 1fok_A*
Probab=38.56 E-value=26 Score=33.04 Aligned_cols=32 Identities=22% Similarity=0.642 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhhcc
Q 030601 124 QKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAK 165 (174)
Q Consensus 124 ~~e~d~lR~Yl~Q~RqEl~~RL~ervy~~~~~psKwWm~FaK 165 (174)
-..+|.|--|+.+..+ | ++.-.|+|||-+|-.
T Consensus 479 i~qaDeM~RYIeen~~----R------de~~nPnkWWe~f~~ 510 (579)
T 2fok_A 479 IGQADEMQRYVEENQT----R------NKHINPNEWWKVYPS 510 (579)
T ss_dssp HHHHHHHHHHHHHHHH----C------CTTTCTTCGGGGSCT
T ss_pred hhhHHHHHHHHHhccc----c------ccccCchhhhhhccc
Confidence 3556666569887652 1 122689999999964
No 10
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=33.98 E-value=32 Score=25.08 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=21.2
Q ss_pred CCCCCCCCCccccCCCChhHHHHHHHHHHHHHHHHH
Q 030601 107 PGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETS 142 (174)
Q Consensus 107 PGd~gFpLn~~y~~P~~~~e~d~lR~Yl~Q~RqEl~ 142 (174)
.||.||++. +. ..+-+.+.+.+..+++|++|.
T Consensus 103 ~~d~g~~~~--~~--~~~~~~~~l~~~~~~ir~~l~ 134 (135)
T 3r6f_A 103 SADERLMIN--WK--AKSVSDKEYSEMVEEARLRVS 134 (135)
T ss_dssp BTTBSCCCC--CC--CCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCceec--CC--CCCCCHHHHHHHHHHHHHHhc
Confidence 478999964 22 223345668888888888764
No 11
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=33.36 E-value=34 Score=21.95 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=12.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHH
Q 030601 123 SQKEAELFRNYLKQIREETSG 143 (174)
Q Consensus 123 ~~~e~d~lR~Yl~Q~RqEl~~ 143 (174)
+++|.|.+ ++|||+||-.
T Consensus 2 s~~ere~~---i~~LreeLR~ 19 (43)
T 2l2l_A 2 SPEERERM---IKQLKEELRL 19 (43)
T ss_dssp CHHHHHHH---HHHHHHHHHH
T ss_pred CHHHHHHH---HHHHHHHHHH
Confidence 44555544 8889988764
No 12
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=32.17 E-value=16 Score=21.34 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030601 128 ELFRNYLKQIREETSGRLL 146 (174)
Q Consensus 128 d~lR~Yl~Q~RqEl~~RL~ 146 (174)
+.||.||+.+||-+-.|+-
T Consensus 5 gk~keklKkf~~~lk~k~~ 23 (26)
T 2pco_A 5 GMWRRKLKKLRNALKKKLK 23 (26)
T ss_dssp SCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3589999999999887763
No 13
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=29.58 E-value=46 Score=24.89 Aligned_cols=32 Identities=6% Similarity=0.026 Sum_probs=21.2
Q ss_pred CCCCCCCCCccccCCCChhHHHHHHHHHHHHHHHHH
Q 030601 107 PGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETS 142 (174)
Q Consensus 107 PGd~gFpLn~~y~~P~~~~e~d~lR~Yl~Q~RqEl~ 142 (174)
.||.||+++- |..+-+.+.+.+..+++|.++.
T Consensus 116 ~~d~g~~~~w----~~~~~~~~~l~~~~~~lr~~l~ 147 (149)
T 3ksv_A 116 DEKTGLKIGW----DTVKVASDELAEDAKRYSEAIA 147 (149)
T ss_dssp CTTSSCCCCC----CCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCC----CCCCCCHHHHHHHHHHHHHHHh
Confidence 5788998642 2333445667777888888763
No 14
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=29.13 E-value=35 Score=21.21 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=17.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q 030601 121 PQSQKEAELFRNYLKQIREETS 142 (174)
Q Consensus 121 P~~~~e~d~lR~Yl~Q~RqEl~ 142 (174)
|++..-.|.|.+|...||+=+.
T Consensus 8 PG~dA~~Eela~Y~~~LrhYiN 29 (36)
T 2bf9_A 8 PGDDAPVEDLIRFYNDLQQYLN 29 (36)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 5556667899999999998654
No 15
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=28.24 E-value=31 Score=26.27 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=14.6
Q ss_pred HHHHHhhcCCCHHHHHHHHH
Q 030601 78 VALKRLEGRRTLAEGTKAII 97 (174)
Q Consensus 78 ~CLkkl~~~~~~~ea~k~l~ 97 (174)
+++..+.++.|-..|.+.|+
T Consensus 10 ~~f~~v~~~~s~s~AA~~L~ 29 (306)
T 3fzv_A 10 KYFVTTVECGSVAEASRKLY 29 (306)
T ss_dssp HHHHHHHHSSSHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHhC
Confidence 56667777888888877764
No 16
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=27.89 E-value=51 Score=24.32 Aligned_cols=38 Identities=3% Similarity=-0.026 Sum_probs=11.8
Q ss_pred CCCCCCCCC-CCccccCCCC-hhHHHHHHHHHHHHHHHHH
Q 030601 105 PVPGEPNFP-FPGLFALPQS-QKEAELFRNYLKQIREETS 142 (174)
Q Consensus 105 ~iPGd~gFp-Ln~~y~~P~~-~~e~d~lR~Yl~Q~RqEl~ 142 (174)
+|||++|-| -++-...|+. ..+-+.|.+-+++|++++.
T Consensus 1 ~~~~~~g~~g~~g~~g~~~~~~~~l~~L~~~~~~L~~~l~ 40 (168)
T 1buu_A 1 AIEVSQGPKGQKGDRGDSRAIEVKLANMEAEINTLKSKLE 40 (168)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 356666655 3333333322 2233445577778888774
No 17
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=27.84 E-value=42 Score=24.88 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCC------HHHHHHHHHHhcccCCCCCCCCCCCCC-ccccCCCChhHHHHHHHHHHHHHHH-HHHHHHh
Q 030601 76 INVALKRLEGRRT------LAEGTKAIINLGLEKVPVPGEPNFPFP-GLFALPQSQKEAELFRNYLKQIREE-TSGRLLS 147 (174)
Q Consensus 76 i~~CLkkl~~~~~------~~ea~k~l~~la~~~F~iPGd~gFpLn-~~y~~P~~~~e~d~lR~Yl~Q~RqE-l~~RL~e 147 (174)
..+|++.|.+..- ...+...+......++.+-+.+-.+.. .+.....++ -.+.+.+.|.+++++ .-.+|.+
T Consensus 160 ~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~-l~~~l~~~l~~l~~~g~~~~i~~ 238 (249)
T 4f3p_A 160 IDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSP-LVAKVNAELARMKADGRYAKIYK 238 (249)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCT-HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCch-HHHHHHHHHHHHHhCCcHHHHHH
Confidence 4567777775532 334444444433333333222222211 122233444 789999999999988 7799999
Q ss_pred hhcCCC
Q 030601 148 VAYRPN 153 (174)
Q Consensus 148 rvy~~~ 153 (174)
|.|..+
T Consensus 239 k~~~~~ 244 (249)
T 4f3p_A 239 KWFGSE 244 (249)
T ss_dssp HHHSSC
T ss_pred HHcCCC
Confidence 999754
No 18
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=25.36 E-value=1.5e+02 Score=20.88 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCC------CHHHHHHHHHHhcccCCC-----CCCCCCCCCC-ccccCCCChhHHHHHHHHHHHHHHH-HH
Q 030601 76 INVALKRLEGRR------TLAEGTKAIINLGLEKVP-----VPGEPNFPFP-GLFALPQSQKEAELFRNYLKQIREE-TS 142 (174)
Q Consensus 76 i~~CLkkl~~~~------~~~ea~k~l~~la~~~F~-----iPGd~gFpLn-~~y~~P~~~~e~d~lR~Yl~Q~RqE-l~ 142 (174)
..+|++.|.+.. +...+...+.+....++. ++...-++.. ++...+.++.-.+.+.+.|.++++. .-
T Consensus 140 ~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~ 219 (227)
T 3tql_A 140 EEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQALLLKLNKALAAIKANGVY 219 (227)
T ss_dssp HHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCHHHHHHHHHHHHHHHhCChH
Confidence 356777776542 244455445444332222 2222212112 2333345666779999999999986 66
Q ss_pred HHHHhhhc
Q 030601 143 GRLLSVAY 150 (174)
Q Consensus 143 ~RL~ervy 150 (174)
.+|.++.|
T Consensus 220 ~~i~~k~~ 227 (227)
T 3tql_A 220 AAIVQKYF 227 (227)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhC
Confidence 78887765
No 19
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=24.65 E-value=32 Score=25.72 Aligned_cols=43 Identities=30% Similarity=0.512 Sum_probs=27.3
Q ss_pred chHHHHHHhhh------hhccccccccCCCCceehHh--HHHHHHHHHHHhhc
Q 030601 41 DIVDEAITFFR------ANVFFRNFDIKSSADKLLIY--LTFYINVALKRLEG 85 (174)
Q Consensus 41 DIIDEal~~Fr------AN~fFrnfEIKg~aDR~LIY--ltLyi~~CLkkl~~ 85 (174)
-.||||-++|| |-+||+. |+.-.|---|= .-+|+-+|=|||+.
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k--~~n~ten~~i~ki~~fyl~ec~kklag 105 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEK--ALNLSDNEEIKKIASFYLEECRKKLAG 105 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcchhHHHHHHHH--HHccccCHHHHHHHHHHHHHHHHHhcC
Confidence 35899999987 4577773 33222222221 13699999999875
No 20
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=21.16 E-value=91 Score=22.25 Aligned_cols=80 Identities=9% Similarity=-0.056 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCC------HHHHHHHHHHhcccCCCCCCCCCCCCC-ccccCCCChhHHHHHHHHHHHHHH-HHHHHHHh
Q 030601 76 INVALKRLEGRRT------LAEGTKAIINLGLEKVPVPGEPNFPFP-GLFALPQSQKEAELFRNYLKQIRE-ETSGRLLS 147 (174)
Q Consensus 76 i~~CLkkl~~~~~------~~ea~k~l~~la~~~F~iPGd~gFpLn-~~y~~P~~~~e~d~lR~Yl~Q~Rq-El~~RL~e 147 (174)
..+|++.|....- ...+...+.......+.+-+.+..+.. .+...+.++ -.+.+.+.|.++++ ..-.+|.+
T Consensus 144 ~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-l~~~~~~~l~~l~~~g~~~~i~~ 222 (233)
T 1ii5_A 144 LTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSP-LQKTINVEMLNLLYSRVIAEFTE 222 (233)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCT-THHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCch-HHHHHHHHHHHHHhCCcHHHHHH
Confidence 4678888876533 334444444443334444333222211 122233343 67889999999984 46678999
Q ss_pred hhcCCCCCC
Q 030601 148 VAYRPNGTP 156 (174)
Q Consensus 148 rvy~~~~~p 156 (174)
|.+..+-.|
T Consensus 223 k~~~~~~~~ 231 (233)
T 1ii5_A 223 RWLGPGIEE 231 (233)
T ss_dssp HHHC-----
T ss_pred HHcCCCccc
Confidence 988654333
No 21
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=21.04 E-value=2.6e+02 Score=20.70 Aligned_cols=34 Identities=0% Similarity=-0.012 Sum_probs=27.5
Q ss_pred CCCChhHHHHHHHHHHHHHHH-HHHHHHhhhcCCC
Q 030601 120 LPQSQKEAELFRNYLKQIREE-TSGRLLSVAYRPN 153 (174)
Q Consensus 120 ~P~~~~e~d~lR~Yl~Q~RqE-l~~RL~ervy~~~ 153 (174)
.+.++.=.+.+.+.|.+++++ .-.+|++|.|..+
T Consensus 216 ~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~ 250 (268)
T 3hv1_A 216 RKVDKTLIKKINQGFETLYKNGEFQKISNKWFGED 250 (268)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCC
Confidence 345666779999999999987 5689999999754
No 22
>1j6r_A Methionine synthase; structural genomics, TM0269, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.30A {Thermotoga maritima} SCOP: d.173.1.2
Probab=21.02 E-value=7.7 Score=31.64 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=28.2
Q ss_pred cchHHHHHHhhhhhccccccccCCCCceehHhHHHHHHHHHHH
Q 030601 40 TDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKR 82 (174)
Q Consensus 40 ~DIIDEal~~FrAN~fFrnfEIKg~aDR~LIYltLyi~~CLkk 82 (174)
.++++|++.++++...|+-|++. .| +.|..+-+-+.||.+
T Consensus 51 ~~~l~~i~~~~~p~~vy~~fp~~--~d-i~i~~~~~r~~~Lad 90 (214)
T 1j6r_A 51 NRAYEELLDAAKPVVLWRDFEVD--GS-LSFDDMRLTGELATK 90 (214)
T ss_dssp HHHHHHHHHHCCCEEEEEEEECT--TC-SBCSSCBCCSHHHHH
T ss_pred HHHHHHHHhhcceeEEEEEEeCC--CC-EEecCCeeechhHHH
Confidence 46788888899999999999998 56 555432223455544
Done!