Query 030602
Match_columns 174
No_of_seqs 58 out of 60
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 02:33:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 98.6 1.5E-08 5E-13 87.1 1.7 100 68-170 7-109 (332)
2 2plg_A TLL0839 protein; hypoth 11.0 2.4E+02 0.0082 22.2 3.8 31 104-134 106-136 (163)
3 2q0z_X Protein Pro2281; SEC63, 10.1 1E+02 0.0036 25.7 1.5 25 93-117 11-36 (339)
4 3nsw_A Excretory-secretory pro 8.9 1.9E+02 0.0064 21.3 2.3 37 95-131 55-105 (106)
5 2lcn_A WALP19-P10 peptide; pro 8.5 1.7E+02 0.0058 16.9 1.5 18 80-97 3-20 (26)
6 1vf5_E Protein PET L; photosyn 8.3 2.9E+02 0.0099 16.7 2.6 20 77-96 5-24 (32)
7 2zt9_E Cytochrome B6-F complex 7.8 2.3E+02 0.008 17.0 2.0 19 77-95 4-22 (31)
8 3ewt_E Tumor necrosis factor r 7.7 1.9E+02 0.0067 16.5 1.5 11 70-80 13-23 (25)
9 2kzq_A Envelope glycoprotein E 6.9 67 0.0023 20.1 -0.8 11 161-171 3-13 (36)
10 1b3t_A Protein (nuclear protei 5.2 4.2E+02 0.014 20.9 2.7 33 97-135 89-121 (147)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=98.56 E-value=1.5e-08 Score=87.08 Aligned_cols=100 Identities=16% Similarity=0.052 Sum_probs=82.7
Q ss_pred cchHHHHHHHHhhhhHHHHHHHHHHHhcCCCCceeeeeeeeeeeeEEeEeeecCCccchhHHHHHHhcCchHHHHHHHHH
Q 030602 68 NWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLDWLY 147 (174)
Q Consensus 68 ~w~~~v~~F~ikNfLplal~vaivlal~~P~pG~~~~eysIsy~ava~IFLISGLtLkT~eL~~al~~Wra~l~glvsIL 147 (174)
+..+++.+|+ +||+++..++++++|+++|..+.....+ ...+++++++..|++++.+|+++.+++||.++.+++.-+
T Consensus 7 ~~l~~~~~~l-~~~~~l~i~~~~~lg~~~P~~~~~~~~~--i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~ 83 (332)
T 3zux_A 7 NILSKISSFI-GKTFSLWAALFAAAAFFAPDTFKWAGPY--IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQF 83 (332)
T ss_dssp CHHHHHHHHH-HHTHHHHHHHHHHHHHHCGGGTGGGGGG--HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHcchhhhhhHHH--HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHH
Confidence 3468888988 6899999999999999999998765432 345788999999999999999999999999999999999
Q ss_pred HHhhHHHHh---cccchhhHHHHhHh
Q 030602 148 LAACQQHYQ---VEWHLPILLGGILH 170 (174)
Q Consensus 148 liTP~ii~~---i~~~p~ef~~GLa~ 170 (174)
++.|...+- +--.++|...|+.-
T Consensus 84 vi~Pll~~~l~~~~~l~~~~~~Glil 109 (332)
T 3zux_A 84 AIMPATAWCLSKLLNLPAEIAVGVIL 109 (332)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 999944433 32346788888754
No 2
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=11.00 E-value=2.4e+02 Score=22.22 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=27.7
Q ss_pred eeeeeeeeeEEeEeeecCCccchhHHHHHHh
Q 030602 104 DKYQLSKFSTFAIFIVSGLTLRSGEIGAAAE 134 (174)
Q Consensus 104 ~eysIsy~ava~IFLISGLtLkT~eL~~al~ 134 (174)
+.|.|.-.-+.++|.+..-+|..+|+..+++
T Consensus 106 arFaI~~n~V~~v~~r~ls~Ld~~E~~~aIt 136 (163)
T 2plg_A 106 AHFAIAEEQVQVVASRTLGGITAGEISRLIT 136 (163)
T ss_dssp CEEEEETTEEEEEEEEECTTCCHHHHHHHHH
T ss_pred eEEEEECCEEEEEEEEEcccCCHHHHHHHHH
Confidence 4788877889999999999999999999875
No 3
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=10.06 E-value=1e+02 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=0.0
Q ss_pred HhcCCCC-ceeeeeeeeeeeeEEeEe
Q 030602 93 GFANPSL-GCLADKYQLSKFSTFAIF 117 (174)
Q Consensus 93 al~~P~p-G~~~~eysIsy~ava~IF 117 (174)
|.+.|++ |.+++.|.|++-.+..++
T Consensus 11 g~l~~t~lGriaS~yYi~~~T~~~f~ 36 (339)
T 2q0z_X 11 MDVAPLNLGMIAAYYYINYTTIELFS 36 (339)
T ss_dssp --------------------------
T ss_pred ceeccCcHHHHHHHHCCCHHHHHHHH
Confidence 4456777 999999999887666543
No 4
>3nsw_A Excretory-secretory protein 2; hookworm, excretory-secretory protei merohedral twinning, immunomodulator, netrin domain, immune; HET: EPE; 1.75A {Ancylostoma ceylanicum}
Probab=8.90 E-value=1.9e+02 Score=21.34 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=25.0
Q ss_pred cCCCCceeeeeee-----------e---eeeeEEeEeeecCCccchhHHHH
Q 030602 95 ANPSLGCLADKYQ-----------L---SKFSTFAIFIVSGLTLRSGEIGA 131 (174)
Q Consensus 95 ~~P~pG~~~~eys-----------I---sy~ava~IFLISGLtLkT~eL~~ 131 (174)
.||++|.++++.. + +.---+.+=|.-||+-+.+|+.+
T Consensus 55 qwpsfgtlrddcgniqltadtdyvlgcksgnqdcfvklhdglsqkekdllk 105 (106)
T 3nsw_A 55 QWPSFGTLRDDCGNIQLTADTDYVLGCKSGNQDCFVKLHDGLSQKEKDLLK 105 (106)
T ss_dssp CCCSEEEEECSSCSCCCCTTEEEEEEEETTTEEEEEEEGGGCCHHHHHHHT
T ss_pred cCCcccccccccCceEEecccCEEEeecCCCcceEEEeccchhhhHHHHhc
Confidence 5899999988732 2 11123556788899888888753
No 5
>2lcn_A WALP19-P10 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=8.48 E-value=1.7e+02 Score=16.88 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHhcCC
Q 030602 80 NFLPLALIGGVAFGFANP 97 (174)
Q Consensus 80 NfLplal~vaivlal~~P 97 (174)
-||-+++.-++.+++-|-
T Consensus 3 wwlalalapalalalwwa 20 (26)
T 2lcn_A 3 WWLALALAPALALALWWA 20 (26)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 378888888888887664
No 6
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=8.29 E-value=2.9e+02 Score=16.72 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHhhhhHHHHHHHHHHHhcC
Q 030602 77 AADNFLPLALIGGVAFGFAN 96 (174)
Q Consensus 77 ~ikNfLplal~vaivlal~~ 96 (174)
+++..+.+++..+++.|+.+
T Consensus 5 ~i~yi~~l~~~f~iA~GL~f 24 (32)
T 1vf5_E 5 AVFYIVFIALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888765
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=7.82 E-value=2.3e+02 Score=16.98 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHhhhhHHHHHHHHHHHhc
Q 030602 77 AADNFLPLALIGGVAFGFA 95 (174)
Q Consensus 77 ~ikNfLplal~vaivlal~ 95 (174)
+++.++.+++..+++.|+.
T Consensus 4 ~i~y~~~l~~~~~iA~GL~ 22 (31)
T 2zt9_E 4 IVAYIGFLALFTGIAAGLL 22 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777888888877765
No 8
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=7.65 E-value=1.9e+02 Score=16.47 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=9.4
Q ss_pred hHHHHHHHHhh
Q 030602 70 AKPLLKIAADN 80 (174)
Q Consensus 70 ~~~v~~F~ikN 80 (174)
++.+++|+++|
T Consensus 13 ~~~Vk~fvR~~ 23 (25)
T 3ewt_E 13 LSQVKGFVRKN 23 (26)
T ss_pred HHHHHHHHHHc
Confidence 58899999987
No 9
>2kzq_A Envelope glycoprotein E2 peptide; membrane protein, E2 structural protein, HCV; NMR {Hepatitis c virus}
Probab=6.88 E-value=67 Score=20.11 Aligned_cols=11 Identities=64% Similarity=1.059 Sum_probs=9.1
Q ss_pred hhhHHHHhHhh
Q 030602 161 LPILLGGILHL 171 (174)
Q Consensus 161 p~ef~~GLa~~ 171 (174)
.|.|.+||-||
T Consensus 3 ~palstGliHl 13 (36)
T 2kzq_A 3 LPALSTGLLHL 13 (36)
T ss_dssp CSCCCCHHHHH
T ss_pred cchhhccceeh
Confidence 47788999997
No 10
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=5.19 E-value=4.2e+02 Score=20.87 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCCceeeeeeeeeeeeEEeEeeecCCccchhHHHHHHhc
Q 030602 97 PSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEA 135 (174)
Q Consensus 97 P~pG~~~~eysIsy~ava~IFLISGLtLkT~eL~~al~~ 135 (174)
|.||-++. +..|-+++|+..++ --|.+++|++.
T Consensus 89 PqPgPlrE----S~~~yFlvFlqt~~--fAe~~kDAi~D 121 (147)
T 1b3t_A 89 PQPGPLRE----SIVCYFMVFLQTHI--FAEVLKDAIKD 121 (147)
T ss_dssp CCCCTTCE----EEEEEEEEEESCHH--HHHHHHHHHHH
T ss_pred CCCCcchh----heeeeeeeeeehhH--HHHHHHHHHHH
Confidence 55566654 45677899998865 56888888764
Done!