BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030603
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 239 bits (611), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/175 (65%), Positives = 130/175 (74%), Gaps = 3/175 (1%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
MTNP+VFFDI I GR+VMEL+AD PKTAENFRALCTGEKG G SGKPLHYK S F
Sbjct: 5 MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVF 64
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMK---HTGPGILSMANAGPNTNGS 117
HR+IPNFM Q ESIYG F DE+F K HTG G LSMANAGPNTNGS
Sbjct: 65 HRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGS 124
Query: 118 QFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
QFFICT TPWLDGKHVVFG+V+DG V+K +E++GS SG+T +V+ DCG++A
Sbjct: 125 QFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVA 179
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 238 bits (607), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/171 (67%), Positives = 130/171 (76%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M+ +VFFDI IG GR+VMEL+ DV PKTA NFRALCTGE GIG SGKPLH+KGS F
Sbjct: 1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRIIPNFM Q ESIYG KF DENFK KHTGPG+LSMANAGPNTNGSQFF
Sbjct: 61 HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
+CT KT WLDGKHVVFG+VV+G V+K +E GS+SG+ + +I DCGQL
Sbjct: 121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 223 bits (567), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 126/172 (73%), Gaps = 7/172 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP V+ D+ GRVV+EL ADV PKTAENFRALCTGEKG G YKGSTF
Sbjct: 1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTF 53
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HR+IP+FMCQ +SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFF
Sbjct: 54 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
ICT KT WLDGKHVVFG V++G V+K +E GS+SGRTS+ +VI DCGQL+
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/170 (63%), Positives = 125/170 (73%), Gaps = 7/170 (4%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
NP V+ D+ GRVV+EL ADV PKTAENFRALCTGEKG G YKGSTFHR
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 55
Query: 63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
+IP+FMCQ +SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFFIC
Sbjct: 56 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 115
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
T KT WLDGKHVVFG V++G V+K +E GS+SGRTS+ +VI DCGQL+
Sbjct: 116 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/170 (63%), Positives = 125/170 (73%), Gaps = 7/170 (4%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
NP V+ D+ GRVV+EL ADV PKTAENFRALCTGEKG G YKGSTFHR
Sbjct: 4 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 56
Query: 63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
+IP+FMCQ +SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFFIC
Sbjct: 57 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 116
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
T KT WLDGKHVVFG V++G V+K +E GS+SGRTS+ +VI DCGQL+
Sbjct: 117 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 166
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/170 (63%), Positives = 125/170 (73%), Gaps = 7/170 (4%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
NP V+ D+ GRVV+EL ADV PKTAENFRALCTGEKG G YKGSTFHR
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 54
Query: 63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
+IP+FMCQ +SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFFIC
Sbjct: 55 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
T KT WLDGKHVVFG V++G V+K +E GS+SGRTS+ +VI DCGQL+
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 220 bits (560), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS F
Sbjct: 20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 72
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRIIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 73 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 132
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 133 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 220 bits (560), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 123/167 (73%), Gaps = 1/167 (0%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+VFFDI I N GR++ ELF+D+TP+T ENFRALCTGEK IG GK LHYK S FHRII
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
P FMCQ ESIYG F DENF MKH PG+LSMANAGPNTN SQFFI
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
PWLDGKHVVFGKV++G +V+++MEK G++SG ++VVI DCG+L
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 220 bits (560), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRIIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54 HRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 220 bits (560), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRIIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 220 bits (560), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRIIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 219 bits (559), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS F
Sbjct: 9 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 61
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRIIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 62 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 121
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 122 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 172
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 219 bits (558), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRIIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54 HRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 219 bits (557), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 109/171 (63%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRIIP FMCQ +SIYG KF DENF +KHTGPGIL+MANAGPNTNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/171 (63%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
H+IIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54 HKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 218 bits (555), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/171 (63%), Positives = 122/171 (71%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRIIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
ICT KT WLDG HVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 122/169 (72%), Gaps = 7/169 (4%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS FHR
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
IIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFIC
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
T KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 122/169 (72%), Gaps = 7/169 (4%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
IIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFIC
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
T KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 218 bits (554), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/171 (63%), Positives = 122/171 (71%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
M NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS F
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRIIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54 HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
ICT KT WLDG HVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 216 bits (550), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 121/169 (71%), Gaps = 7/169 (4%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
IIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFIC
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
T KT WLDGKHVVFG V +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 216 bits (550), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/166 (62%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+VFFDI I N GR++ ELF+D+TP+T ENFRALCTGEK IG GK LHYK S FHRII
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
P FMCQ ESIYG F DENF MKH PG+LSMANAGPNTN SQF I
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 170
PWLDGKHVVFGKV++G +V+++MEK G++SG ++VVI DCG+
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGE 169
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 216 bits (549), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 122/169 (72%), Gaps = 7/169 (4%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
IIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFIC
Sbjct: 55 IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
T KT WLDGKHVVFGKV +G ++++ M++ GS +G+TS+ + I DCGQL
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQL 163
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 216 bits (549), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 121/169 (71%), Gaps = 7/169 (4%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS FHR
Sbjct: 7 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 59
Query: 63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
IIP FMCQ +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFIC
Sbjct: 60 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
T KT WLDG HVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 213 bits (541), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/168 (60%), Positives = 122/168 (72%), Gaps = 7/168 (4%)
Query: 4 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRI 63
PRVFFDI IG + GR+VMEL +D+ P+TAENFRALCTGE+G G Y FHR+
Sbjct: 11 PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRV 63
Query: 64 IPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICT 123
IP FMCQ +SIYG KF DENF+++H G G+LSMAN+GPNTNGSQFFICT
Sbjct: 64 IPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICT 123
Query: 124 QKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
K WLDGKHVVFG+VVDG +V+K ME VGS+SG+ + V+I CG+L
Sbjct: 124 TKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 211 bits (536), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 119/169 (70%), Gaps = 7/169 (4%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
NP VFFDI + GRV ELFAD PKTAENFRAL TGEKG G YKGS FHR
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
IIP F CQ +SIYG KF DENF +KHTGPGILS ANAGPNTNGSQFFIC
Sbjct: 55 IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
T KT WLDGKHVVFGKV +G ++++ E+ GS +G+TS+ + I DCGQL
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCGQL 163
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 209 bits (533), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/167 (62%), Positives = 119/167 (71%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
NP V+FDI IG+ GR+ MELFAD P TAENFRALCTGEKG+G SGKPL Y GS FHR
Sbjct: 19 NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHR 78
Query: 63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
IIP FM Q ESIYG KF DENF H P +LSMANAGPNTNGSQFFI
Sbjct: 79 IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCG 169
T PWLDGKHVVFGKV++G V+K +EK GS++G+ +++V I G
Sbjct: 139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 121/173 (69%), Gaps = 1/173 (0%)
Query: 2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTF 60
+NPRVFFD+ IG GR+V+ELFAD+ PKTAENFRALCTGEKGIG +GKPLH+KG F
Sbjct: 14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HRII FM Q ESIYG KF DENF KH G+LSMANAG NTNGSQFF
Sbjct: 74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
I T TP LDGKHVVFG+V+ G V K +E V + + ++ VI +CG+L E
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKE 186
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 197 bits (500), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/169 (56%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
+NP+V+ DI IG GR+ M L +DV P TAENFR LCT EKG G +KGS+FH
Sbjct: 10 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFH 62
Query: 62 RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
RIIP FMCQ +SIYG KF DENF +KHTGPG+LSMAN+GPNTNGSQFF+
Sbjct: 63 RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 122
Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 170
KT WLDGKHVVFG+V +G V++ +E GS+ G+ Q V+I DCG+
Sbjct: 123 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 171
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 197 bits (500), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/169 (56%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
+NP+V+ DI IG GR+ M L +DV P TAENFR LCT EKG G +KGS+FH
Sbjct: 2 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFH 54
Query: 62 RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
RIIP FMCQ +SIYG KF DENF +KHTGPG+LSMAN+GPNTNGSQFF+
Sbjct: 55 RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 114
Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 170
KT WLDGKHVVFG+V +G V++ +E GS+ G+ Q V+I DCG+
Sbjct: 115 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 163
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 192 bits (489), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 113/167 (67%), Gaps = 7/167 (4%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+V+FD+ GRVV +L+ D+ PKTAENFRALCTGEKG G Y GS FHR+I
Sbjct: 3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVI 55
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
P+FM Q +SIYG KF DENFK H PG+LSMANAGPNTNGSQFFI T
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
PWLDGKHVVFG+VVDGY ++K +E +GS SG T +V+ G+L
Sbjct: 116 PCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 190 bits (482), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/169 (55%), Positives = 114/169 (67%), Gaps = 7/169 (4%)
Query: 2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
+NP+V+ DI IG GR+ L +DV P TAENFR LCT EKG G +KGS+FH
Sbjct: 11 SNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFH 63
Query: 62 RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
RIIP F CQ +SIYG KF DENF +KHTGPG+LS AN+GPNTNGSQFF+
Sbjct: 64 RIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFL 123
Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 170
KT WLDGKHVVFG+V +G V++ +E GS+ G+ Q V+I DCG+
Sbjct: 124 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 172
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 7/165 (4%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
VFFDI G + +LF DV PKTA NFRALCTGEKG G Y GS FHR+I
Sbjct: 3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVI 55
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
P+FM Q +SIYG KFADENF++KH PG+LSMANAGPNTNGSQFFI T
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCG 169
T WLDGKHVVFG+V+DG +V+K +E GS SG+ + I CG
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 183 bits (464), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 114/167 (68%), Gaps = 7/167 (4%)
Query: 6 VFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIP 65
VFF+I I +GR+V +L+ + PKTA+NFR L TG+ G G YK S FHR+IP
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 57
Query: 66 NFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQK 125
FM Q +SIYG KFADENF++KHT PG+LSMANAG NTNGSQFFI T
Sbjct: 58 QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 117
Query: 126 TPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
T WLDGKHVVFG+V++G +++ +E GS SG+T+ T+ I DCG +A
Sbjct: 118 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 6 VFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIP 65
VFF+I I +GR+V +L+ + PKTA+NFR L TG+ G G YK S FHR+IP
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 58
Query: 66 NFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQK 125
FM Q +SIYG KFADENF++KHT PG+LSMANAG NTNGSQFFI T
Sbjct: 59 QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 118
Query: 126 TPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
T WLDGKHVVFG+V++G +++ +E GS SG+T+ T+ I DCG +
Sbjct: 119 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTV 164
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 179 bits (455), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 113/171 (66%), Gaps = 3/171 (1%)
Query: 2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
NP VFFD+ IG GR+ +ELFADV PKTAENFR CTGE G P+ YKGSTFH
Sbjct: 9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFH 66
Query: 62 RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
R+I +FM Q SIY FADENFK++H+ PG+LSMAN+GP+TNG QFFI
Sbjct: 67 RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126
Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGS-ESGRTSQTVVIEDCGQL 171
K WLDGKHVVFGK++DG V++ +E V + + + VVI CG++
Sbjct: 127 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 179 bits (453), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 110/171 (64%), Gaps = 7/171 (4%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
MTNP VFFD+ GR+ MELF+++ P+TAENFRALCTGEKG G +K S F
Sbjct: 4 MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIF 56
Query: 61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
HR+IP+F+CQ +SIYG KF DENF +KHTGPG+LSMAN G NTN SQF
Sbjct: 57 HRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFV 116
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
I +K LD KHVVFG V DG +K +E GS G + + I +CGQ+
Sbjct: 117 ITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 167
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 171 bits (432), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFHRI 63
RVF D+ I GR+VMEL+ D+ P+T NF LCTG G G +SGKPLHYKGSTFHR+
Sbjct: 8 RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRV 67
Query: 64 IPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICT 123
I NFM Q ESIYG F DE F MKH P ++SMAN GPNTNGSQFFI T
Sbjct: 68 IKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITT 127
Query: 124 QKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQLA 172
P L+ HVVFGKVV G V+ +E + + S R VVI +CG+L
Sbjct: 128 TPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 171 bits (432), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSG-KPLHYKGST 59
+ PR FFDI I GRVV ELF+DV PKT ENFR LCTGEKG G S KPLHYK
Sbjct: 24 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 83
Query: 60 FHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
FHR++ +FM Q ESIYG F DE+F +KH +LSMAN G +TNGSQF
Sbjct: 84 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQL 171
FI T+ TP LDG HVVFG+V+ G V++++E +++ + V I CG+L
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 108/169 (63%), Gaps = 9/169 (5%)
Query: 6 VFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIP 65
V+FD+ + + GR+VM+L D+ PKTA+NFR LC KG G YKGSTFHRIIP
Sbjct: 30 VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFHRIIP 82
Query: 66 NFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQK 125
FM Q SIYG KF DENF++KHT GILSMAN G +TNGSQFFI K
Sbjct: 83 GFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGK 142
Query: 126 TPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIE--DCGQLA 172
T WLD KHVVFG+VV+G V+ + K GSESG+ + IE DCG L
Sbjct: 143 TQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLG 191
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 170 bits (431), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMS-GKPLHYKGST 59
+ PR FFDI I GRVV ELF+DV PKT ENFR LCTGEKG G S KPLHYK
Sbjct: 7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66
Query: 60 FHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
FHR++ +FM Q ESIYG F DE+F +KH +LSMAN G +TNGSQF
Sbjct: 67 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQL 171
FI T+ TP LDG HVVFG+V+ G V++++E +++ + V I CG+L
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 170 bits (431), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMS-GKPLHYKGST 59
+ PR FFDI I GRVV ELF+DV PKT ENFR LCTGEKG G S KPLHYK
Sbjct: 7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXL 66
Query: 60 FHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
FHR++ +FM Q ESIYG F DE+F +KH +LSMAN G +TNGSQF
Sbjct: 67 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQL 171
FI T+ TP LDG HVVFG+V+ G V++++E +++ + V I CG+L
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 111/168 (66%), Gaps = 8/168 (4%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+V+FD+ IG + GRV+ LF PKT +NF AL TGEKG G YK S FHR+I
Sbjct: 17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVI 69
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
+FM Q +SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI T
Sbjct: 70 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 129
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
KT WLDGKHVVFGKV++G V++ +E ++S + + V+I DCG++
Sbjct: 130 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 111/168 (66%), Gaps = 8/168 (4%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+V+FD+ IG + GRV+ LF PKT +NF AL TGEKG G YK S FHR+I
Sbjct: 7 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVI 59
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
+FM Q +SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI T
Sbjct: 60 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 119
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
KT WLDGKHVVFGKV++G V++ +E ++S + + V+I DCG++
Sbjct: 120 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 111/169 (65%), Gaps = 10/169 (5%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+V+FD+ IG + GRVV+ LF PKT +NF AL TGEKG G YK S FHR+I
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVI 66
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
+FM Q +SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI T
Sbjct: 67 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS--QTVVIEDCGQL 171
KT WLDGKHVVFGKV++G V++ +E ++ GR + V I DCG++
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKTD-GRDKPLKDVTIADCGKI 174
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 111/169 (65%), Gaps = 10/169 (5%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+V+FD+ IG + GRVV+ LF PKT +NF AL TGEKG G YK S FHR+I
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVI 66
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
+FM Q +SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI T
Sbjct: 67 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS--QTVVIEDCGQL 171
KT WLDGKHVVFGKV++G V++ +E ++ GR + V I DCG++
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKTD-GRDKPLKDVTIADCGKI 174
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 108/176 (61%), Gaps = 16/176 (9%)
Query: 5 RVFFDILIGKMNK-----GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGST 59
+VFFD+ + GR+V LF PKTA+NFR LC G G Y+ ST
Sbjct: 4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YREST 56
Query: 60 FHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
FHRIIPNFM Q SIYG KFADENF KH GILSMANAGPNTNGSQF
Sbjct: 57 FHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQF 116
Query: 120 FICTQKTPWLDGKHVVFGKVVD--GYSVIKDMEKVGSESG--RTSQTVVIEDCGQL 171
FI T T WLDGKHVVFG+V D YSV+K++E +GS SG R++ I +CG+L
Sbjct: 117 FITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 163 bits (413), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 113/174 (64%), Gaps = 2/174 (1%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFH 61
+P+ FDI I + GR++ +LF+D+ PKT +NF LC+GEKG+G +GK L YKGSTFH
Sbjct: 19 SPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFH 78
Query: 62 RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
R++ NFM Q ESIYG F DENF +KH +LSMAN G +TNGSQFFI
Sbjct: 79 RVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFI 138
Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQLAEK 174
T+ P LDG HVVFG V+ G+ VI+ +E + +++ R V + DCG LA K
Sbjct: 139 TTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATK 192
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 163 bits (412), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 97/146 (66%), Gaps = 7/146 (4%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+VFFD+ IG + GR+V+ LF V PKT ENF AL TGEKG G YKGS FHR+I
Sbjct: 17 KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVI 69
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
+FM Q SIYG F DENFK+KH G G +SMANAGP+TNGSQFFI
Sbjct: 70 KDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 129
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDME 150
K WLDGKHVVFGKV+DG +V+ +E
Sbjct: 130 KPTWLDGKHVVFGKVIDGMTVVHSIE 155
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 162 bits (411), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 98/146 (67%), Gaps = 7/146 (4%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+VFFD+ IG + GR+V+ LF +V PKT ENF AL TGEKG G YKGS FHR+I
Sbjct: 9 KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHRVI 61
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
+FM Q SIYG F DENFK+KH G G +SMANAGP+TNGSQFFI
Sbjct: 62 KDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDME 150
K WLDGKHVVFGKV+DG +V+ +E
Sbjct: 122 KPTWLDGKHVVFGKVLDGMTVVHSIE 147
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 104/169 (61%), Gaps = 8/169 (4%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
RV+FD+ IG GR+V+ LF PKTA NF L KG G Y GS FHR+I
Sbjct: 8 RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVI 60
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
+FM Q SIYG KFADENFK+KH G G LSMANAG +TNGSQFFI T
Sbjct: 61 ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQLA 172
KTPWLDG+HVVFGK+++G V++ +E+ G R Q V+I G +A
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 107/168 (63%), Gaps = 9/168 (5%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+V+FDI IG GRVV+ LF + PKT ENF+ L +GE G G YKGS FHR+I
Sbjct: 7 KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHRVI 59
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
NFM Q +SIYG +F DEN K+KH G +SMANAGPN+NGSQFF+ T
Sbjct: 60 RNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTA 118
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSE-SGRTSQTVVIEDCGQL 171
TPWLDG+HVVFGKVV+G V+K +E + + + + V I DCG L
Sbjct: 119 PTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 103/168 (61%), Gaps = 9/168 (5%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+V+FD++I GR+ + LF P T ENFR LCTGE G G YK S FHR+I
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVI 65
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
NFM Q +SIYG KFADEN +KH G LSMANAGPNTNGSQFFI T
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
TPWLDG+HVVFGKV+DG V+ +EK + S R + V I G+L
Sbjct: 125 PTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 156 bits (395), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 102/168 (60%), Gaps = 9/168 (5%)
Query: 5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
+V+FD++I GR+ + LF P T ENFR LCTGE G G YK S FHR+I
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVI 65
Query: 65 PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
NFM Q +SIYG KFADEN +KH G LSMANAGPNTNGSQFFI T
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
TPWLDG HVVFGKV+DG V+ +EK + S R + V I G+L
Sbjct: 125 PTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 149 bits (376), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
+NP VF DI +G G+ ELF ++ PKT+ENFR CTGE + + P+ YK + FH
Sbjct: 58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFH 115
Query: 62 RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
R+I FM Q SIYG KF DENF +KH G+LSMAN+GPNTNG QFFI
Sbjct: 116 RVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFI 175
Query: 122 CTQKTPWLDGKHVVFGKVVDGYS--VIKDMEKVGSESGRTSQTVVIE--DCGQL 171
T+K WLDGK+VVFG+++D S ++K +E V + I +CG+L
Sbjct: 176 TTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 87/154 (56%), Gaps = 14/154 (9%)
Query: 16 NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXX 75
NKG + +EL D+TPKT ENF LC K +Y G+ FHR I NF+ Q
Sbjct: 27 NKGDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPT 76
Query: 76 XXXXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
ES +G F DE + HTG GILSMAN+GPN+N SQFFI + +LD KH
Sbjct: 77 GTGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 135 VFGKVVDGYSVIKDMEKVGSE--SGRTSQTVVIE 166
+FG+VV G+ V+ ME V S+ + R + + I+
Sbjct: 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRID 169
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
G + +E+F + TPKT ENF ALC +Y G FHR I FM Q
Sbjct: 10 GDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTGT 59
Query: 78 XXXXXESIYGMKFADENFK-MKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
SI+G KF DE + +KH G++SMAN GPNTNGSQFFI K P LD K+ VF
Sbjct: 60 GRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVF 118
Query: 137 GKVVDGYSVIKDMEK--VGSESGRTSQTVVIED 167
GKV+DG + ++EK V ++ R V I+D
Sbjct: 119 GKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 151
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
G + +E+F + TPKT ENF ALC +Y G FHR I FM Q
Sbjct: 16 GDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTGT 65
Query: 78 XXXXXESIYGMKFADENFK-MKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
SI+G KF DE + +KH G++SMAN GPNTNGSQFFI K P LD K+ VF
Sbjct: 66 GRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVF 124
Query: 137 GKVVDGYSVIKDMEK--VGSESGRTSQTVVIED 167
GKV+DG + ++EK V ++ R V I+D
Sbjct: 125 GKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 157
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 80/140 (57%), Gaps = 12/140 (8%)
Query: 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
G +V+EL+ PKT +NF L +G +Y G+ FHRII +FM Q
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 78 XXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
SIYG +F DE + +K TG GIL+MANAGP+TNGSQFF+ T WLDGKH +F
Sbjct: 71 GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 137 GKVVDGYSVIKDMEKVGSES 156
G+V G ++ + V + S
Sbjct: 130 GRVCQGIGMVNRVGMVETNS 149
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 102 bits (255), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 80/140 (57%), Gaps = 12/140 (8%)
Query: 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
G +V+EL+ PKT +NF L +G +Y G+ FHRII +FM Q
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 78 XXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
SIYG +F DE + +K TG GIL+MANAGP+TNGSQFF+ T WLDGKH +F
Sbjct: 71 GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 137 GKVVDGYSVIKDMEKVGSES 156
G+V G ++ + V + S
Sbjct: 130 GRVCQGIGMVNRVGMVETNS 149
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 80/140 (57%), Gaps = 12/140 (8%)
Query: 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
G +V+EL+ PKT +NF L +G +Y G+ FHRII +FM Q
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 78 XXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
SIYG +F DE + +K TG GIL+MANAGP+TNGSQFF+ T WLDGKH +F
Sbjct: 71 GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 137 GKVVDGYSVIKDMEKVGSES 156
G+V G ++ + V + S
Sbjct: 130 GRVCQGIGMVNRVGMVETNS 149
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 4 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRI 63
P+ D I + G + +LF PKT ENF C + + +Y G TFHRI
Sbjct: 17 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---C-------VHSRNGYYNGHTFHRI 66
Query: 64 IPNFMCQXXXXXXXXXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFIC 122
I FM Q ESI+G +F DE + ++H P LSMANAG NTNGSQFFI
Sbjct: 67 IKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 125
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKV 152
TPWLD KH VFG+V G V++ + V
Sbjct: 126 VVPTPWLDNKHTVFGRVTKGMEVVQRISNV 155
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 76/138 (55%), Gaps = 12/138 (8%)
Query: 16 NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXX 75
N G +EL+ +PKT NF LC E G Y + FHR+IPNF+ Q
Sbjct: 46 NLGDFEVELYWYHSPKTCLNFYTLC--EMGF--------YDNTIFHRVIPNFVIQGGDPT 95
Query: 76 XXXXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
+SIYG F DE N ++KHTG GILSM+N GPNTN SQFFI P LDGKH
Sbjct: 96 GTGKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 154
Query: 135 VFGKVVDGYSVIKDMEKV 152
+F +V + I+++ V
Sbjct: 155 IFARVSKNMTCIENIASV 172
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 77/139 (55%), Gaps = 12/139 (8%)
Query: 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
G + + LF KT +NF ++G +Y FHR+I +FM Q
Sbjct: 15 GDIHISLFYKECKKTVQNFSVH-------SING---YYNNCIFHRVIKHFMVQTGDPSGD 64
Query: 78 XXXXXESIYGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
ESI+G +F DE F + H+ P ++SMAN GPNTNGSQFFI T PWLD KH VF
Sbjct: 65 GTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 123
Query: 137 GKVVDGYSVIKDMEKVGSE 155
GKV G ++ D+EKV ++
Sbjct: 124 GKVTQGSKIVLDIEKVRTD 142
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 86/160 (53%), Gaps = 13/160 (8%)
Query: 16 NKGRVVMELFADVTPKTAENFRALCTGEKGIG---MSGKPL--HYKGSTFHRIIPNFMCQ 70
N+G + + LF + PKT NF L G K SG P Y G+ FHR+I FM Q
Sbjct: 31 NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ 90
Query: 71 XXXXXXXXXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWL 129
KFADE + +++ P +L+MANAGP TNGSQFFI KTP L
Sbjct: 91 GGDPTGTGRGGPG----YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHL 146
Query: 130 DGKHVVFGKVVDGYS--VIKDMEKVGSE-SGRTSQTVVIE 166
+ +H +FG+V+D S V++ + K ++ + R + VVIE
Sbjct: 147 NRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE 186
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 17/158 (10%)
Query: 16 NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXX 75
N G + ELF PK +NF AL SG +YK + FH+ I F+ Q
Sbjct: 24 NYGDLKFELFCSQCPKACKNFLALSA-------SG---YYKNTIFHKNIKGFIIQGGDPT 73
Query: 76 XXXXXXXESIYGMKFADENF-KMKHTGPGILSMANAG----PNTNGSQFFICTQKTPWLD 130
ESIYG F DE + ++K+ GILSMA+ G PNTNGSQFFI P L+
Sbjct: 74 GTGKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLN 132
Query: 131 GKHVVFGKVVDGYSVIKDMEKVGSE-SGRTSQTVVIED 167
G++V+FGK++DG+ + +E S+ S + ++I+D
Sbjct: 133 GEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 22/148 (14%)
Query: 17 KGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXX 76
+G + +EL AD+ P+ ++F LC + ++ + FHR I NFM Q
Sbjct: 15 QGSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAEL 64
Query: 77 XXXXXXESIY-----------GMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
+ + G F DE + ++ H G G+LSMAN G ++N S+FFI +
Sbjct: 65 RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKV 152
L+ KH +FG+VV G V++ EK+
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKL 152
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXX 73
K G + +EL++ PK NF LC +Y + FHR++P F+ Q
Sbjct: 30 KTTAGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGD 79
Query: 74 XXXXXXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGK 132
ESIYG F DE + +++ G+++MANAG + NGSQFF + L+ K
Sbjct: 80 PTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNK 138
Query: 133 HVVFGKVV 140
H +FGKV
Sbjct: 139 HTIFGKVT 146
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 50/178 (28%)
Query: 14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXX 73
+ N G + ++LFAD P+TA NF K HY G+ FHR+I FM Q
Sbjct: 5 QTNHGTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQ--- 51
Query: 74 XXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAG---------------PNTNGSQ 118
G F + K K T I + AN G P++ +Q
Sbjct: 52 -------------GGGF-EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQ 97
Query: 119 FFICTQKTPWLDGK--------HVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDC 168
FFI + +LD + VFG+VV+G V+ ++ V + S V ++D
Sbjct: 98 FFINVKDNAFLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDV 155
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 16 NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQ----- 70
N G + +EL PKT ENF L +KG HY G+ FHR+I FM Q
Sbjct: 11 NHGVIKLELDEAKAPKTVENF--LNYVKKG--------HYDGTIFHRVINGFMIQGGGFE 60
Query: 71 --XXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPW 128
E+ G+K M T + A N N ++F + TP
Sbjct: 61 PGLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQ 120
Query: 129 LDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDC 168
G + VFGKVV+G ++ ++ V + S Q V +D
Sbjct: 121 GWG-YAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDV 159
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 74/199 (37%), Gaps = 32/199 (16%)
Query: 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGE------KGIGMSGKPLH-- 54
NPRV+ DI++ GR+ ++LF D P ENF L G+ G G H
Sbjct: 14 NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73
Query: 55 --YKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADE-------NFKMKHTGPGIL 105
Y+G FH ++ N ++Y DE ++ H G+L
Sbjct: 74 RTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVY----CDEPIPPVFGDYFYPHESKGLL 129
Query: 106 SMA----NAGPNTNGSQFFIC------TQKTPWLDGKHVVFGKVVDGYSVIKDMEK-VGS 154
S+ +G S F I + LD VV G+V G V+ + +
Sbjct: 130 SLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKP 189
Query: 155 ESGRTSQTVVIEDCGQLAE 173
+GR T I CG +
Sbjct: 190 YAGRKYPTFSIGKCGAYLD 208
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 26/164 (15%)
Query: 16 NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXX 75
N G +V++ F D P+T +NF C + Y + FHR+I FM Q
Sbjct: 7 NHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFE 56
Query: 76 --XXXXXXXESIYGMKFADENFKMKHTGPGILSMANA-GPNTNGSQFFICTQKTPWLDGK 132
E I + N +K+T G L+MA P++ +QFFI +L+
Sbjct: 57 PGMKQKATKEPIKN----EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFS 111
Query: 133 --------HVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDC 168
+ VF +VVDG V+ ++ V + Q V ED
Sbjct: 112 GESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDV 155
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 26/164 (15%)
Query: 16 NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXX 75
N G +V++ F D P+T +NF C + Y + FHR+I FM Q
Sbjct: 7 NHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFE 56
Query: 76 --XXXXXXXESIYGMKFADENFKMKHTGPGILSMANA-GPNTNGSQFFICTQKTPWLDGK 132
E I + N +K+T G L+MA P++ +QFFI +L+
Sbjct: 57 PGMKQKATKEPIKN----EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFS 111
Query: 133 --------HVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDC 168
+ VF +VVDG + ++ V + Q V ED
Sbjct: 112 GESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDV 155
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 31/159 (19%)
Query: 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
G + +EL+A P NF LC + G +Y + FHR++ +F+ Q
Sbjct: 31 GDLDVELWARECPLACRNFVQLC-------LEG---YYVNTIFHRVVKDFIVQGGDPTGT 80
Query: 78 XXXXXESIY-GMKFADENF-KMKHTGPGILSMANAGPN--------------TNGSQFFI 121
++ + G F E ++K G++ +AN G + TNG+QFFI
Sbjct: 81 GRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFI 140
Query: 122 CTQKTPWLDGKHVVFGKVVDG--YSVIK--DMEKVGSES 156
+ L+ + +FGKV Y+++K D+E VG E
Sbjct: 141 TLARADVLNNAYTLFGKVTGHTLYNLMKFNDLE-VGKED 178
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 19/152 (12%)
Query: 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
G + +EL P + +NF SG Y +TFHR+IP FM Q
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 78 XXXXXESIYGMKFADENFKMKHTGPGILSMA-NAGPNTNGSQFFICTQKTPWLD-GK--- 132
+ AD + G ++MA A ++ SQFFI +LD G+
Sbjct: 64 MQQKKPNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 133 -HVVFGKVVDGYSVIKDMEKVGSESGRTSQTV 163
+ VFGKVV G V + +V + Q V
Sbjct: 121 GYAVFGKVVKGMDVADKISQVPTHDVGPYQNV 152
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
G + +EL P + +NF SG Y +TFHR+IP FM Q
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 78 XXXXXESIYGMKFADENFKMKHTGPGILSMA-NAGPNTNGSQFFICTQKTPWLD-GK--- 132
+ AD + G ++MA A ++ SQFFI +LD G+
Sbjct: 64 MQQKKPNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 133 -HVVFGKVVDGYSVIKDMEKV 152
+ VFGKVV G V + +V
Sbjct: 121 GYAVFGKVVKGMDVADKISQV 141
>pdb|2V5I|A Chain A, Structure Of The Receptor-binding Protein Of Bacteriophage
Det7: A Podoviral Tailspike In A Myovirus
Length = 559
Score = 30.0 bits (66), Expect = 0.73, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 94 NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWL------DGKHVVFGKVV 140
N K K G G L N GP + +Q F+ ++ TPW+ DGK + +V
Sbjct: 64 NCKAKFIGDGALIFNNMGPGSVINQPFMESKTTPWVIFPWDADGKWITDAALV 116
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
+E+F D + + +ALC G KG+G+ G+P Y S + R
Sbjct: 303 LEVFVDGGVRRGTDVLKALCLGAKGVGL-GRPFLYANSCYGR 343
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
+E+F D + + +ALC G KG+G+ G+P Y S + R
Sbjct: 305 LEVFVDGGVRRGTDVLKALCLGAKGVGL-GRPFLYANSCYGR 345
>pdb|3VC5|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Phosphate
pdb|3VC6|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Magnesium And Formate
pdb|4DHG|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|B Chain B, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|C Chain C, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|D Chain D, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
Length = 441
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 122 CTQKTPWLDGKHVVFG---KVVDGYSVIKDMEKVGSESGRTSQTVV---IEDCG 169
C TPW DG+ VV + VDG + D +G E R + V+ E CG
Sbjct: 364 CDTHTPWQDGQDVVAPGALRFVDGAVPVPDGPGLGVELDRDALAVMHEQYERCG 417
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 36 FRALCTGEKGIGMSGKPLHYKGSTFHR 62
+ALC G KG+G+ G+P Y S + R
Sbjct: 419 LKALCLGAKGVGL-GRPFLYANSCYGR 444
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 36 FRALCTGEKGIGMSGKPLHYKGSTFHR 62
+ALC G KG+G+ G+P Y S + R
Sbjct: 419 LKALCLGAKGVGL-GRPFLYANSCYGR 444
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 36 FRALCTGEKGIGMSGKPLHYKGSTFHR 62
+ALC G KG+G+ G+P Y S + R
Sbjct: 419 LKALCLGAKGVGL-GRPFLYANSCYGR 444
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 36 FRALCTGEKGIGMSGKPLHYKGSTFHR 62
+ALC G KG+G+ G+P Y S + R
Sbjct: 419 LKALCLGAKGVGL-GRPFLYANSCYGR 444
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
+E+F D + + +ALC G KG+G+ G+P Y S + R
Sbjct: 399 LEVFVDGGVRRGTDVLKALCLGAKGVGL-GRPFLYANSCYGR 439
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 22 MELFADV-TPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
+E+F D + + +ALC G KG+G+ G+P Y S + R
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGL-GRPFLYANSCYGR 444
>pdb|1FLC|A Chain A, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|C Chain C, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|E Chain E, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
Length = 432
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKP----LHYKGSTFHRII 64
+ +K ADV+ KTA+ FR L G + M G P Y+G H++
Sbjct: 58 RTDKSNSAFPRSADVSAKTADKFRFLSGGSLMLSMFGPPGKVDYLYQGCGKHKVF 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,161,959
Number of Sequences: 62578
Number of extensions: 202207
Number of successful extensions: 549
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 87
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)