Query 030603
Match_columns 174
No_of_seqs 110 out of 1257
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 16:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 7.8E-59 1.7E-63 375.6 15.3 172 3-174 8-181 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.6E-53 3.4E-58 319.1 17.2 163 4-173 40-204 (217)
3 PTZ00060 cyclophilin; Provisio 100.0 4.5E-51 9.7E-56 311.8 21.1 171 1-172 13-183 (183)
4 cd01926 cyclophilin_ABH_like c 100.0 4.1E-50 8.8E-55 301.9 20.2 164 4-169 1-164 (164)
5 PLN03149 peptidyl-prolyl isome 100.0 5.3E-50 1.2E-54 306.3 19.9 169 1-171 16-186 (186)
6 KOG0879 U-snRNP-associated cyc 100.0 1.1E-50 2.4E-55 287.5 13.0 167 3-171 10-177 (177)
7 PTZ00221 cyclophilin; Provisio 100.0 1.4E-48 3.1E-53 308.0 20.8 167 3-173 52-221 (249)
8 KOG0111 Cyclophilin-type pepti 100.0 1.1E-47 2.5E-52 292.4 10.5 165 1-172 134-298 (298)
9 cd01923 cyclophilin_RING cyclo 100.0 2.6E-45 5.6E-50 274.5 19.3 148 15-173 6-155 (159)
10 cd01928 Cyclophilin_PPIL3_like 100.0 8.7E-45 1.9E-49 270.0 18.2 144 15-169 7-152 (153)
11 COG0652 PpiB Peptidyl-prolyl c 100.0 4.2E-45 9.1E-50 270.3 16.2 146 13-171 4-157 (158)
12 KOG0881 Cyclophilin type pepti 100.0 3.9E-46 8.4E-51 261.5 9.0 153 3-171 9-163 (164)
13 cd01927 cyclophilin_WD40 cyclo 100.0 1.6E-44 3.4E-49 267.3 17.4 143 14-167 3-147 (148)
14 cd01921 cyclophilin_RRM cyclop 100.0 2.2E-44 4.7E-49 271.2 18.1 149 14-173 3-161 (166)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 4.5E-44 9.8E-49 264.2 16.8 142 14-166 3-145 (146)
16 cd01925 cyclophilin_CeCYP16-li 100.0 6.4E-42 1.4E-46 258.9 18.9 148 15-173 12-162 (171)
17 PRK10903 peptidyl-prolyl cis-t 100.0 1E-41 2.3E-46 261.3 18.8 151 3-171 28-189 (190)
18 PRK10791 peptidyl-prolyl cis-t 100.0 4.3E-41 9.4E-46 252.5 17.1 145 14-171 5-163 (164)
19 KOG0883 Cyclophilin type, U bo 100.0 1.7E-41 3.8E-46 275.9 12.6 154 6-173 278-433 (518)
20 cd01920 cyclophilin_EcCYP_like 100.0 3.4E-40 7.4E-45 245.8 16.6 140 15-167 4-154 (155)
21 PF00160 Pro_isomerase: Cyclop 100.0 8.4E-40 1.8E-44 243.4 17.5 151 7-170 1-155 (155)
22 KOG0882 Cyclophilin-related pe 100.0 8.5E-41 1.8E-45 276.2 11.6 149 11-170 407-557 (558)
23 KOG0884 Similar to cyclophilin 100.0 2.9E-40 6.3E-45 230.7 11.6 145 15-170 7-154 (161)
24 cd00317 cyclophilin cyclophili 100.0 5.8E-39 1.3E-43 236.8 17.0 141 15-167 4-146 (146)
25 KOG0865 Cyclophilin type pepti 100.0 5.2E-40 1.1E-44 244.9 10.0 164 1-171 1-167 (167)
26 cd01924 cyclophilin_TLP40_like 100.0 7.5E-37 1.6E-41 231.9 15.5 128 14-151 3-164 (176)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 3E-36 6.6E-41 244.1 12.1 147 15-172 19-168 (439)
28 KOG0415 Predicted peptidyl pro 100.0 2.8E-35 6E-40 237.4 13.7 149 14-173 6-164 (479)
29 KOG0882 Cyclophilin-related pe 98.0 8.4E-06 1.8E-10 69.1 4.6 146 15-171 105-262 (558)
30 TIGR03268 methan_mark_3 putati 97.3 0.0024 5.2E-08 55.1 9.8 102 18-150 201-302 (503)
31 PRK00969 hypothetical protein; 97.2 0.0028 6.1E-08 54.9 9.6 102 18-150 204-305 (508)
32 TIGR03268 methan_mark_3 putati 96.9 0.016 3.6E-07 50.1 10.9 115 18-152 375-496 (503)
33 COG4070 Predicted peptidyl-pro 96.8 0.007 1.5E-07 51.0 7.9 103 18-151 203-305 (512)
34 PRK00969 hypothetical protein; 96.5 0.046 1E-06 47.6 10.8 114 18-152 378-498 (508)
35 PF12903 DUF3830: Protein of u 96.0 0.053 1.1E-06 39.9 7.7 109 18-151 8-130 (147)
36 COG4070 Predicted peptidyl-pro 95.5 0.063 1.4E-06 45.4 7.1 113 19-152 377-499 (512)
37 PF04126 Cyclophil_like: Cyclo 59.4 21 0.00046 25.2 4.3 47 100-151 60-113 (120)
38 PF05913 DUF871: Bacterial pro 58.8 7.2 0.00016 33.0 2.1 52 99-151 297-349 (357)
39 COG2164 Uncharacterized conser 51.4 20 0.00043 24.9 2.9 22 18-40 13-34 (126)
40 COG0219 CspR Predicted rRNA me 42.7 34 0.00073 25.5 3.2 34 19-65 2-35 (155)
41 PF10276 zf-CHCC: Zinc-finger 31.5 34 0.00074 19.4 1.4 11 2-12 15-25 (40)
42 COG4391 Uncharacterized protei 29.6 40 0.00087 21.0 1.6 10 2-11 35-44 (62)
43 PF08415 NRPS: Nonribosomal pe 26.1 65 0.0014 19.3 2.1 27 140-167 4-30 (58)
44 PF09383 NIL: NIL domain; Int 25.3 1.8E+02 0.0039 18.1 4.5 28 11-40 39-66 (76)
45 PF09887 DUF2114: Uncharacteri 24.4 48 0.001 28.4 1.6 37 1-41 194-230 (448)
46 PRK14451 acylphosphatase; Prov 24.3 1.1E+02 0.0024 20.3 3.1 27 13-41 36-62 (89)
47 TIGR03285 methan_mark_14 putat 23.0 52 0.0011 28.2 1.6 37 1-41 191-227 (445)
48 KOG1816 Ubiquitin fusion-degra 22.3 1.1E+02 0.0024 25.2 3.3 36 137-172 38-78 (308)
49 PRK14452 acylphosphatase; Prov 21.3 1.3E+02 0.0028 20.8 3.1 27 13-41 53-79 (107)
50 PRK14442 acylphosphatase; Prov 20.4 1.5E+02 0.0032 19.7 3.2 28 12-41 36-63 (91)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-59 Score=375.56 Aligned_cols=172 Identities=67% Similarity=1.118 Sum_probs=167.4
Q ss_pred CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCC-CCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGI-GMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG 81 (174)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~-~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~ 81 (174)
||+|||||.|++...|||+++||.|.||+||+||..||+|.+|. ...|+.++|+|+.||||+++|||||||++.++++|
T Consensus 8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG 87 (372)
T KOG0546|consen 8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG 87 (372)
T ss_pred CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence 89999999999999999999999999999999999999999984 36899999999999999999999999999999999
Q ss_pred CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcc
Q 030603 82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTS 160 (174)
Q Consensus 82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~ 160 (174)
|.+|||..+.||++.++|.++++||||+.|||++|||||||+.++|||||+|+|||+||+|++||+.|+.+.++. .+|.
T Consensus 88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~ 167 (372)
T KOG0546|consen 88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL 167 (372)
T ss_pred cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred cceEEeEeeeeccC
Q 030603 161 QTVVIEDCGQLAEK 174 (174)
Q Consensus 161 ~~i~I~~~g~l~~~ 174 (174)
.+|+|.+||+|.++
T Consensus 168 ~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 168 ADVVISDCGELVKK 181 (372)
T ss_pred cceEeccccccccc
Confidence 99999999999764
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-53 Score=319.14 Aligned_cols=163 Identities=65% Similarity=1.139 Sum_probs=157.4
Q ss_pred CeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhc-CCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603 4 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCT-GEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG 82 (174)
Q Consensus 4 p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~-~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~ 82 (174)
.+|||||++.+...|||+|+||++.+|+||+||.+||+ +.++.+ |.+++||||+|||||||||.+.+++.++
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~t~g~gtGg 112 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDFTKGDGTGG 112 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCccccCCCCCC
Confidence 48999999999999999999999999999999999998 666555 9999999999999999999999999999
Q ss_pred CcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCccc
Q 030603 83 ESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQ 161 (174)
Q Consensus 83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~ 161 (174)
.+++|.++++|++.++|.++|.||||+.||+++|||||||+...|+||++++|||+|++||++|.+|+.++|+. ++|.+
T Consensus 113 ~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e 192 (217)
T KOG0880|consen 113 KSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLE 192 (217)
T ss_pred eEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ceEEeEeeeecc
Q 030603 162 TVVIEDCGQLAE 173 (174)
Q Consensus 162 ~i~I~~~g~l~~ 173 (174)
+++|.+||.|.-
T Consensus 193 ~v~I~~~g~l~~ 204 (217)
T KOG0880|consen 193 DVVIANCGELPV 204 (217)
T ss_pred cEEEeecCcccc
Confidence 999999998864
No 3
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=4.5e-51 Score=311.76 Aligned_cols=171 Identities=69% Similarity=1.171 Sum_probs=157.5
Q ss_pred CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT 80 (174)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~ 80 (174)
|.||+||||+.+++++.|+|+||||.+.||++|+||++||++....+ .|+..+|+++.||||+|+++||+||+..+.+.
T Consensus 13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~ 91 (183)
T PTZ00060 13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT 91 (183)
T ss_pred CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence 45899999999999999999999999999999999999998765432 45566799999999999999999998766777
Q ss_pred CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603 81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS 160 (174)
Q Consensus 81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~ 160 (174)
++.++++..+++|...+.|..+|+|+|++.++++++|||||++.++|+||++|+|||+|++|||||++|+++++..++|.
T Consensus 92 ~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~ 171 (183)
T PTZ00060 92 GGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPK 171 (183)
T ss_pred CCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999779999
Q ss_pred cceEEeEeeeec
Q 030603 161 QTVVIEDCGQLA 172 (174)
Q Consensus 161 ~~i~I~~~g~l~ 172 (174)
++|+|.+||+|+
T Consensus 172 ~~v~I~~cg~~~ 183 (183)
T PTZ00060 172 KPVVVTDCGELQ 183 (183)
T ss_pred CCeEEEEeEEcC
Confidence 999999999985
No 4
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=4.1e-50 Score=301.91 Aligned_cols=164 Identities=77% Similarity=1.301 Sum_probs=150.8
Q ss_pred CeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCC
Q 030603 4 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGE 83 (174)
Q Consensus 4 p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~ 83 (174)
|+||||+.+++++.|+|+||||.+.||++|+||++||++.++.+. +..+|+++.|||++|+++||+|++..+++.++.
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~ 78 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK 78 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence 899999999999999999999999999999999999986544211 234699999999999999999998766777778
Q ss_pred cccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcccce
Q 030603 84 SIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTV 163 (174)
Q Consensus 84 ~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~i 163 (174)
++++..+++|...+.|..+|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++.++|.++|
T Consensus 79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i 158 (164)
T cd01926 79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV 158 (164)
T ss_pred cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEeEee
Q 030603 164 VIEDCG 169 (174)
Q Consensus 164 ~I~~~g 169 (174)
+|.+||
T Consensus 159 ~I~~cG 164 (164)
T cd01926 159 VIADCG 164 (164)
T ss_pred EEEECC
Confidence 999998
No 5
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=5.3e-50 Score=306.32 Aligned_cols=169 Identities=59% Similarity=1.051 Sum_probs=154.9
Q ss_pred CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT 80 (174)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~ 80 (174)
|.||+||||+.+++++.|+|+||||.+.||++|+||++||++... +.|+...|+++.||||+|+++||+||+..+++.
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~ 93 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGT 93 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCC
Confidence 468999999999999999999999999999999999999987642 234444599999999999999999998767777
Q ss_pred CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEE-cChHHHHHHHhCCCCC-CC
Q 030603 81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVV-DGYSVIKDMEKVGSES-GR 158 (174)
Q Consensus 81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~~~-~~ 158 (174)
++.++++..+++|...+.|+.+|+|+|++.++++++|||||++.++|+||++|+|||+|+ +||+||++|++++++. ++
T Consensus 94 g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~ 173 (186)
T PLN03149 94 GCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNR 173 (186)
T ss_pred CcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCC
Confidence 888888888888888899999999999999999999999999999999999999999999 8999999999999976 99
Q ss_pred cccceEEeEeeee
Q 030603 159 TSQTVVIEDCGQL 171 (174)
Q Consensus 159 P~~~i~I~~~g~l 171 (174)
|..+|+|.+||++
T Consensus 174 P~~~i~I~~cG~~ 186 (186)
T PLN03149 174 PKLACVISECGEM 186 (186)
T ss_pred CcCCeEEEeCEeC
Confidence 9999999999985
No 6
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-50 Score=287.52 Aligned_cols=167 Identities=57% Similarity=1.019 Sum_probs=162.1
Q ss_pred CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG 82 (174)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~ 82 (174)
||.||||+.+.+...|||.||||.|.+|++++||.+.|+|... ..|++.-|++++|||++++||||+||...+++++.
T Consensus 10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~ 87 (177)
T KOG0879|consen 10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGV 87 (177)
T ss_pred CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceecCCCceE
Confidence 9999999999999999999999999999999999999999764 57888889999999999999999999999999999
Q ss_pred CcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCccc
Q 030603 83 ESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQ 161 (174)
Q Consensus 83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~ 161 (174)
.++++.++++|++.++|..+|++|||+++++++|.|||||..+..+||++++|||+|++|+.++++|+.+++.. ++|+-
T Consensus 88 ~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl 167 (177)
T KOG0879|consen 88 ASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKL 167 (177)
T ss_pred EEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred ceEEeEeeee
Q 030603 162 TVVIEDCGQL 171 (174)
Q Consensus 162 ~i~I~~~g~l 171 (174)
+|.|..||++
T Consensus 168 ~v~i~qCGem 177 (177)
T KOG0879|consen 168 PVVIVQCGEM 177 (177)
T ss_pred cEEEeecccC
Confidence 9999999974
No 7
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.4e-48 Score=308.00 Aligned_cols=167 Identities=41% Similarity=0.623 Sum_probs=152.2
Q ss_pred CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCC-CCCccccccCCEEEEeecC-ceEeeCCCCCCCCC
Q 030603 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFHRIIPN-FMCQGGDFTRGNGT 80 (174)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~-~~g~~~~y~g~~f~ri~~~-~~iq~G~~~~~~~~ 80 (174)
+|+||||+.+++.+.|+|+|+||.+.||++|+||++||+|.++.+ ..|+..+|+++.||||+++ ++||+||+..
T Consensus 52 ~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~---- 127 (249)
T PTZ00221 52 SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS---- 127 (249)
T ss_pred CCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----
Confidence 899999999999999999999999999999999999999877543 3455566999999999985 8999999763
Q ss_pred CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCc
Q 030603 81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRT 159 (174)
Q Consensus 81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P 159 (174)
.+.+++|.++.+|...++|+.+|+|+|++.++++++||||||+.++|+||++|+|||+|++||+||++|++++++. ++|
T Consensus 128 ~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP 207 (249)
T PTZ00221 128 FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRP 207 (249)
T ss_pred CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCC
Confidence 2345567889999989999999999999999999999999999999999999999999999999999999999876 999
Q ss_pred ccceEEeEeeeecc
Q 030603 160 SQTVVIEDCGQLAE 173 (174)
Q Consensus 160 ~~~i~I~~~g~l~~ 173 (174)
.++|+|.+||+|.+
T Consensus 208 ~~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 208 LLPVTVSFCGALTG 221 (249)
T ss_pred CCCeEEEECeEecC
Confidence 99999999999975
No 8
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-47 Score=292.39 Aligned_cols=165 Identities=68% Similarity=1.187 Sum_probs=162.0
Q ss_pred CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT 80 (174)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~ 80 (174)
|+||+||+|+++.+...|||+++|..+..|++++||..||++.+|.+ |+|+.||||+|.||+||||++++++.
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ngt 206 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNGT 206 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCCC
Confidence 68999999999999999999999999999999999999999999988 99999999999999999999999999
Q ss_pred CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603 81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS 160 (174)
Q Consensus 81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~ 160 (174)
++.+++|..+.+|++.++|..+|+|||+++++|++||||||++....+||++++|||.|++||+|++++++.+++.++|.
T Consensus 207 ggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~ 286 (298)
T KOG0111|consen 207 GGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQ 286 (298)
T ss_pred CCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeEeeeec
Q 030603 161 QTVVIEDCGQLA 172 (174)
Q Consensus 161 ~~i~I~~~g~l~ 172 (174)
..|+|.+||+|.
T Consensus 287 qkv~i~~cge~~ 298 (298)
T KOG0111|consen 287 QKVKIVECGEIE 298 (298)
T ss_pred eEEEEEeccccC
Confidence 999999999874
No 9
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=2.6e-45 Score=274.46 Aligned_cols=148 Identities=51% Similarity=0.860 Sum_probs=137.1
Q ss_pred EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603 15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN 94 (174)
Q Consensus 15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (174)
|+.|+|+||||++.||++|+||++||+ .| ||+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~-------~g---~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~ 74 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCK-------KG---YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF 74 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHh-------cC---ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCccc
Confidence 899999999999999999999999994 33 4999999999999999999986 566777888888888885
Q ss_pred c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeEeeeec
Q 030603 95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQLA 172 (174)
Q Consensus 95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g~l~ 172 (174)
. .++|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++||++|++|+++++++ ++|+++|+|.+|+++.
T Consensus 75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 4 6788899999999999999999999999999999999999999999999999999999876 9999999999999997
Q ss_pred c
Q 030603 173 E 173 (174)
Q Consensus 173 ~ 173 (174)
|
T Consensus 155 d 155 (159)
T cd01923 155 D 155 (159)
T ss_pred C
Confidence 6
No 10
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=8.7e-45 Score=270.00 Aligned_cols=144 Identities=52% Similarity=0.859 Sum_probs=132.8
Q ss_pred EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603 15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN 94 (174)
Q Consensus 15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (174)
|+.|+|+||||++.||++|+||++||++ | ||+++.|||++|++++|+||+. +++.++.++++.++++|.
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~-------g---~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 75 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCAS-------G---YYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEF 75 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHhc-------C---ccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCcccccc
Confidence 8999999999999999999999999953 3 4999999999999999999986 556677778888888887
Q ss_pred c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeEee
Q 030603 95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCG 169 (174)
Q Consensus 95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g 169 (174)
. .+.|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++. ++|..+|+|.+|.
T Consensus 76 ~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 76 RETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred ccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 5 5788899999999999999999999999999999999999999999999999999999876 9999999999984
No 11
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-45 Score=270.29 Aligned_cols=146 Identities=47% Similarity=0.798 Sum_probs=131.0
Q ss_pred CCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCC
Q 030603 13 GKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFAD 92 (174)
Q Consensus 13 ~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~ 92 (174)
..|+.|+|+|+||++.||+||+||++||+ .|+ |+|+.||||+|+||+||||+..+.+.+++ +.++++
T Consensus 4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~-------~g~---Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~ 70 (158)
T COG0652 4 LETNKGDITIELYPDKAPKTVANFLQLVK-------EGF---YDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKD 70 (158)
T ss_pred eeccCCCEEEEECCCcCcHHHHHHHHHHH-------cCC---CCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcc
Confidence 45999999999999999999999999994 444 99999999999999999999876677776 378899
Q ss_pred CccCCCCCC--CeEEEeeecC-CCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-----CCcccceE
Q 030603 93 ENFKMKHTG--PGILSMANAG-PNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-----GRTSQTVV 164 (174)
Q Consensus 93 e~~~~~~~~--~G~v~~~~~~-~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-----~~P~~~i~ 164 (174)
|.....|.+ +|+||||+.+ |++++|||||++.+.|+||++|+|||+|++|||+|++|++..+.. ..|..+++
T Consensus 71 E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~ 150 (158)
T COG0652 71 ENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVK 150 (158)
T ss_pred cccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeE
Confidence 988877776 9999999998 999999999999999999999999999999999999999987765 45667888
Q ss_pred EeEeeee
Q 030603 165 IEDCGQL 171 (174)
Q Consensus 165 I~~~g~l 171 (174)
|.+..++
T Consensus 151 i~~~~~~ 157 (158)
T COG0652 151 ILSVKIV 157 (158)
T ss_pred Eeeeeee
Confidence 8887765
No 12
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-46 Score=261.48 Aligned_cols=153 Identities=52% Similarity=0.856 Sum_probs=144.1
Q ss_pred CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG 82 (174)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~ 82 (174)
-|.|+++ |++|.|++|||-+.||++|+||.+|+ ++|+ |+|+.||||+++|+|||||++ +.+.++
T Consensus 9 ~~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa-------rrgY---Yn~v~FHRii~DFmiQGGDPT-GTGRGG 72 (164)
T KOG0881|consen 9 PPNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA-------RRGY---YNGVIFHRIIKDFMIQGGDPT-GTGRGG 72 (164)
T ss_pred CCeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH-------hccc---ccceeeeehhhhheeecCCCC-CCCCCc
Confidence 3677777 99999999999999999999999999 5666 999999999999999999997 789999
Q ss_pred CcccCCccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcc
Q 030603 83 ESIYGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTS 160 (174)
Q Consensus 83 ~~~~~~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~ 160 (174)
.+++|..+.+|-. .++|..+|.+|||+.+||+++|||||||++.++||+++++||||+.||+|+.++..+.|++ +||+
T Consensus 73 aSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi 152 (164)
T KOG0881|consen 73 ASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPI 152 (164)
T ss_pred cccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCc
Confidence 9999999999976 7999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cceEEeEeeee
Q 030603 161 QTVVIEDCGQL 171 (174)
Q Consensus 161 ~~i~I~~~g~l 171 (174)
.+++|..+-.+
T Consensus 153 ~~~kIika~~~ 163 (164)
T KOG0881|consen 153 DEVKIIKAYPS 163 (164)
T ss_pred cceeeEeeecC
Confidence 99999887543
No 13
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.6e-44 Score=267.30 Aligned_cols=143 Identities=51% Similarity=0.861 Sum_probs=131.8
Q ss_pred CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCC
Q 030603 14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADE 93 (174)
Q Consensus 14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 93 (174)
.|+.|+|+||||.+.||++|+||++||+. | ||+++.|||++|++++|+||+. +++.++.++++.++++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-------g---~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e 71 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHARN-------G---YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE 71 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhhc-------C---CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence 48999999999999999999999999953 3 4999999999999999999975 56677777888888888
Q ss_pred cc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeE
Q 030603 94 NF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIED 167 (174)
Q Consensus 94 ~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~ 167 (174)
.. .+.|..+|+|+|++.++++++|||||+++++|+||++|+|||+|++|||+|++|++++++. ++|.++|+|.+
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 76 7889989999999999999999999999999999999999999999999999999999876 99999999986
No 14
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2.2e-44 Score=271.25 Aligned_cols=149 Identities=39% Similarity=0.662 Sum_probs=131.8
Q ss_pred CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccC------
Q 030603 14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYG------ 87 (174)
Q Consensus 14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~------ 87 (174)
+|+.|+|+||||++.||++|+||++||+. | ||+++.|||++|+++||+|++. .++.++.++++
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~-------~---~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~ 71 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCKL-------K---YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ 71 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHhc-------C---CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence 48999999999999999999999999953 3 4999999999999999999986 45555555543
Q ss_pred -CccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccC-CCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccce
Q 030603 88 -MKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQK-TPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTV 163 (174)
Q Consensus 88 -~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~-~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i 163 (174)
..+.+|.. .++|+.+|+|+|++.++++++|||||++.+ .|+||++|+|||||++|||||++|++++++. ++|.++|
T Consensus 72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i 151 (166)
T cd01921 72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI 151 (166)
T ss_pred CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence 24556653 678989999999999999999999999975 7999999999999999999999999999977 9999999
Q ss_pred EEeEeeeecc
Q 030603 164 VIEDCGQLAE 173 (174)
Q Consensus 164 ~I~~~g~l~~ 173 (174)
+|.+|++|.|
T Consensus 152 ~I~~~~i~~~ 161 (166)
T cd01921 152 RIKHTHILDD 161 (166)
T ss_pred EEEEEEEECC
Confidence 9999999986
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=4.5e-44 Score=264.23 Aligned_cols=142 Identities=54% Similarity=0.925 Sum_probs=130.4
Q ss_pred CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCC
Q 030603 14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADE 93 (174)
Q Consensus 14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 93 (174)
+|+.|+|+||||.+.||++|+||++||+ .| ||+++.|||++|++++|+|++. +++.++.++++.++++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~-------~g---~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e 71 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAK-------RG---YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE 71 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHh-------cC---CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence 4899999999999999999999999994 33 4999999999999999999975 45666777788888888
Q ss_pred c-cCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcccceEEe
Q 030603 94 N-FKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIE 166 (174)
Q Consensus 94 ~-~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~i~I~ 166 (174)
. ..++|.++|+|+|++.++++++|||||+++++|+||++|+|||+|++|||||++|++++++.++|.++|+|.
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~ 145 (146)
T cd01922 72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKIL 145 (146)
T ss_pred cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEe
Confidence 5 478899999999999999999999999999999999999999999999999999999999888999999996
No 16
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=6.4e-42 Score=258.85 Aligned_cols=148 Identities=40% Similarity=0.705 Sum_probs=135.6
Q ss_pred EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603 15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN 94 (174)
Q Consensus 15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (174)
|++|+|+||||.+.||++|+||++||+. | ||+++.|||++|++++|+|++. +++.++.++++..+.+|.
T Consensus 12 Ts~G~i~ieL~~~~~P~t~~nF~~L~~~-------~---~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~ 80 (171)
T cd01925 12 TTAGDIDIELWSKEAPKACRNFIQLCLE-------G---YYDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEF 80 (171)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhc-------C---CCCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCccc
Confidence 8999999999999999999999999953 3 4999999999999999999986 567777888888888886
Q ss_pred c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEE-cChHHHHHHHhCCCCC-CCcccceEEeEeeee
Q 030603 95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVV-DGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171 (174)
Q Consensus 95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g~l 171 (174)
. .+.|+++|+|+|++.++++++|||||++++.|+||++|+|||+|+ ++++++++|++++++. ++|.++|+|.+|+++
T Consensus 81 ~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~ 160 (171)
T cd01925 81 HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVL 160 (171)
T ss_pred ccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEE
Confidence 5 577899999999999999999999999999999999999999999 4688899999999987 899999999999998
Q ss_pred cc
Q 030603 172 AE 173 (174)
Q Consensus 172 ~~ 173 (174)
.+
T Consensus 161 ~~ 162 (171)
T cd01925 161 EN 162 (171)
T ss_pred cC
Confidence 75
No 17
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1e-41 Score=261.28 Aligned_cols=151 Identities=32% Similarity=0.520 Sum_probs=129.3
Q ss_pred CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603 3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG 82 (174)
Q Consensus 3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~ 82 (174)
+++|.++ |+.|+|+||||++.||++|+||++||+ .| ||+++.|||++|+|++|+|++......
T Consensus 28 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~-------~g---~Ydg~~FhRvi~~f~iQgG~~~~~~~~-- 90 (190)
T PRK10903 28 DPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQMQQ-- 90 (190)
T ss_pred CcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHHh-------cC---CcCCcEEEEEeCCceEEeCCcCCCCCC--
Confidence 4566555 899999999999999999999999994 34 499999999999999999997643211
Q ss_pred CcccCCccCCCccCCCCCCCeEEEeeecC-CCCCcceEEEEccCCCCCCC-----CceEEEEEEcChHHHHHHHhCCCCC
Q 030603 83 ESIYGMKFADENFKMKHTGPGILSMANAG-PNTNGSQFFICTQKTPWLDG-----KHVVFGKVVDGYSVIKDMEKVGSES 156 (174)
Q Consensus 83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~~~-~~~~~s~FfItl~~~~~ld~-----~~~vfG~V~~G~~vl~~I~~~~~~~ 156 (174)
...+.++.+|.....|+.+|+|+|++.+ +++++|||||++++.++||+ +|+|||+|++|||||++|++++++.
T Consensus 91 -~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~ 169 (190)
T PRK10903 91 -KKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD 169 (190)
T ss_pred -CCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCC
Confidence 1224567777666667889999999865 89999999999999999984 8999999999999999999999864
Q ss_pred -----CCcccceEEeEeeee
Q 030603 157 -----GRTSQTVVIEDCGQL 171 (174)
Q Consensus 157 -----~~P~~~i~I~~~g~l 171 (174)
++|.++|+|.+|+++
T Consensus 170 ~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 170 VGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCcccCCeEEEEEEEe
Confidence 699999999999986
No 18
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=4.3e-41 Score=252.55 Aligned_cols=145 Identities=31% Similarity=0.554 Sum_probs=122.8
Q ss_pred CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCC
Q 030603 14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADE 93 (174)
Q Consensus 14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 93 (174)
.|+.|+|+|+||++.||++|+||++||+ .| ||+++.||||+|+|+||||++..+... ...+.++.+|
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~-------~g---~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e 71 (164)
T PRK10791 5 HTNHGDIVIKTFDDKAPETVKNFLDYCR-------EG---FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNE 71 (164)
T ss_pred EEccccEEEEEeCCCCcHHHHHHHHHHh-------cC---CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCc
Confidence 3899999999999999999999999994 33 499999999999999999997543221 1224566777
Q ss_pred ccCCCCCCCeEEEeeecC-CCCCcceEEEEccCCCCCC-------C-CceEEEEEEcChHHHHHHHhCCCCC-----CCc
Q 030603 94 NFKMKHTGPGILSMANAG-PNTNGSQFFICTQKTPWLD-------G-KHVVFGKVVDGYSVIKDMEKVGSES-----GRT 159 (174)
Q Consensus 94 ~~~~~~~~~G~v~~~~~~-~~~~~s~FfItl~~~~~ld-------~-~~~vfG~V~~G~~vl~~I~~~~~~~-----~~P 159 (174)
.....++.+|+|||++.+ +++++|||||++.+.++|| + +|+|||+|++|||||++|++++++. ++|
T Consensus 72 ~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P 151 (164)
T PRK10791 72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVP 151 (164)
T ss_pred ccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCc
Confidence 554455679999999975 9999999999999988776 2 7999999999999999999999875 589
Q ss_pred ccceEEeEeeee
Q 030603 160 SQTVVIEDCGQL 171 (174)
Q Consensus 160 ~~~i~I~~~g~l 171 (174)
..+|+|.+|.+.
T Consensus 152 ~~~v~I~~~~i~ 163 (164)
T PRK10791 152 KEDVIIESVTVS 163 (164)
T ss_pred CCCeEEEEEEEe
Confidence 999999999764
No 19
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=275.92 Aligned_cols=154 Identities=46% Similarity=0.813 Sum_probs=144.9
Q ss_pred EEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcc
Q 030603 6 VFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESI 85 (174)
Q Consensus 6 v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~ 85 (174)
-|..+. |+.|.|-|||+.|.+|.+|+||+.|| ..|+ |+|+.|||.+.||||||||++ +.+.|+.++
T Consensus 278 gyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc-------~~gY---Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSi 343 (518)
T KOG0883|consen 278 GYVRLV---TNHGPLNLELHCDYAPRACENFITLC-------KNGY---YNNTIFHRSIRNFMIQGGDPT-GTGRGGESI 343 (518)
T ss_pred ceEEEe---ccCCceeeEeecCcchHHHHHHHHHH-------hccc---ccchHHHHHHHHHeeeCCCCC-CCCCCCccc
Confidence 344444 89999999999999999999999999 4444 999999999999999999997 889999999
Q ss_pred cCCccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccce
Q 030603 86 YGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTV 163 (174)
Q Consensus 86 ~~~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i 163 (174)
+|.++.||.. .+.|..||+||||++|||++||||||+...+.+||++|++||+|+.|+++|.+|+.+++++ ++|..+|
T Consensus 344 WgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I 423 (518)
T KOG0883|consen 344 WGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEI 423 (518)
T ss_pred cCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccce
Confidence 9999999976 8999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEeEeeeecc
Q 030603 164 VIEDCGQLAE 173 (174)
Q Consensus 164 ~I~~~g~l~~ 173 (174)
+|.+.-+..|
T Consensus 424 ~i~~~~VFVd 433 (518)
T KOG0883|consen 424 KIEDAIVFVD 433 (518)
T ss_pred EEeeeEEeeC
Confidence 9999998875
No 20
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.4e-40 Score=245.84 Aligned_cols=140 Identities=34% Similarity=0.507 Sum_probs=120.5
Q ss_pred EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603 15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN 94 (174)
Q Consensus 15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (174)
|+.|+|+|+||++.||++|+||++||+ .| ||+++.||||+|++++|+|++...... ...+.++.+|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~-------~g---~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~ 70 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVR-------KG---FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA 70 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHh-------cC---CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence 899999999999999999999999994 33 499999999999999999997643222 12245566676
Q ss_pred cCCCCCCCeEEEeeecC-CCCCcceEEEEccCCCCCCC-----CceEEEEEEcChHHHHHHHhCCCCC-----CCcccce
Q 030603 95 FKMKHTGPGILSMANAG-PNTNGSQFFICTQKTPWLDG-----KHVVFGKVVDGYSVIKDMEKVGSES-----GRTSQTV 163 (174)
Q Consensus 95 ~~~~~~~~G~v~~~~~~-~~~~~s~FfItl~~~~~ld~-----~~~vfG~V~~G~~vl~~I~~~~~~~-----~~P~~~i 163 (174)
....|+.+|+|||++.+ +++++|||||++++.|+||. +|+|||+|++||+||++|++++++. ++|..+|
T Consensus 71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v 150 (155)
T cd01920 71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV 150 (155)
T ss_pred cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence 66667889999999975 89999999999999999995 7999999999999999999999876 4889899
Q ss_pred EEeE
Q 030603 164 VIED 167 (174)
Q Consensus 164 ~I~~ 167 (174)
+|.+
T Consensus 151 ~i~~ 154 (155)
T cd01920 151 IIES 154 (155)
T ss_pred EEEE
Confidence 8875
No 21
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=8.4e-40 Score=243.39 Aligned_cols=151 Identities=48% Similarity=0.807 Sum_probs=129.2
Q ss_pred EEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC-Ccc
Q 030603 7 FFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG-ESI 85 (174)
Q Consensus 7 ~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~-~~~ 85 (174)
|++|.+++ .|+|+||||++.||++|+||++||+.+ +|+++.|||++|++++|+|++......+. ...
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~ 68 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST 68 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc----------ccCCceeecccccceeeeeeccCCCCccccccc
Confidence 68888544 999999999999999999999999633 49999999999999999999765433111 122
Q ss_pred cCCccCCCcc-CCCCCCCeEEEeeecC--CCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcccc
Q 030603 86 YGMKFADENF-KMKHTGPGILSMANAG--PNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQT 162 (174)
Q Consensus 86 ~~~~~~~e~~-~~~~~~~G~v~~~~~~--~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~ 162 (174)
.+.++++|.. ...++.+|+|+|++.+ +++++|||||+|++.|++|++|+|||+|++||++|++|++.++++ +|.++
T Consensus 69 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~ 147 (155)
T PF00160_consen 69 GGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQD 147 (155)
T ss_dssp TBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSST
T ss_pred CccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCC
Confidence 3345777774 4455589999999975 888999999999999999999999999999999999999999988 99999
Q ss_pred eEEeEeee
Q 030603 163 VVIEDCGQ 170 (174)
Q Consensus 163 i~I~~~g~ 170 (174)
|+|.+||+
T Consensus 148 v~I~~cgv 155 (155)
T PF00160_consen 148 VTISSCGV 155 (155)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeEC
Confidence 99999997
No 22
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-41 Score=276.23 Aligned_cols=149 Identities=48% Similarity=0.806 Sum_probs=140.5
Q ss_pred EECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCcc
Q 030603 11 LIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKF 90 (174)
Q Consensus 11 ~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~ 90 (174)
++--|+.|+|.|.||++.||++|+||...| +.|+ |+|..||||+++||||+||+. +++.|+.+++|..+
T Consensus 407 aiihtt~gdi~~kl~p~ecpktvenf~th~-------rngy---y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~df 475 (558)
T KOG0882|consen 407 AIIHTTQGDIHIKLYPEECPKTVENFTTHS-------RNGY---YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDF 475 (558)
T ss_pred eEEEecccceEEEecccccchhhhhhhccc-------cCcc---ccCcchHHhhhhheeecCCCC-CCCCCCcccccccc
Confidence 334599999999999999999999999999 5555 999999999999999999997 89999999999999
Q ss_pred CCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeEe
Q 030603 91 ADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDC 168 (174)
Q Consensus 91 ~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~~ 168 (174)
++|.+ .++|+++.+||||+.|+|++|||||||+-+.|+||++++|||||+.||+|+++|+++.|+. +||.+++.|.+.
T Consensus 476 edefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iini 555 (558)
T KOG0882|consen 476 EDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINI 555 (558)
T ss_pred hhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEE
Confidence 99987 8999999999999999999999999999999999999999999999999999999999977 999999999987
Q ss_pred ee
Q 030603 169 GQ 170 (174)
Q Consensus 169 g~ 170 (174)
.+
T Consensus 556 sv 557 (558)
T KOG0882|consen 556 SV 557 (558)
T ss_pred ec
Confidence 54
No 23
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-40 Score=230.67 Aligned_cols=145 Identities=49% Similarity=0.754 Sum_probs=137.0
Q ss_pred EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603 15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN 94 (174)
Q Consensus 15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (174)
|..|+|-||||.+.+|++|+||+.+|. ..||++|.|+|-+|+|++|+|++. ..+.++.+++|.++++|.
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~~----------~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~ 75 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALCA----------SDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEY 75 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHhh----------hhhccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHH
Confidence 788999999999999999999999994 346999999999999999999986 678999999999999998
Q ss_pred c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC--CCcccceEEeEeee
Q 030603 95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES--GRTSQTVVIEDCGQ 170 (174)
Q Consensus 95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~--~~P~~~i~I~~~g~ 170 (174)
. .++|+.||.||||+.||++++||||||.+.+|+||-+|+|||+|++|+|.|++|+.+++++ .||..++.|.+..+
T Consensus 76 ~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti 154 (161)
T KOG0884|consen 76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_pred HHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence 6 6999999999999999999999999999999999999999999999999999999999998 89999999988764
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=5.8e-39 Score=236.78 Aligned_cols=141 Identities=58% Similarity=0.944 Sum_probs=125.9
Q ss_pred EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603 15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN 94 (174)
Q Consensus 15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (174)
|+.|+|+|+||++.||++|+||++||+++ +|+++.|||++|++++|+|++......+ +.++..+++|.
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~ 71 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARGG----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN 71 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhcC----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence 78899999999999999999999999543 4999999999999999999986543322 34466788887
Q ss_pred cCCC-CCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeE
Q 030603 95 FKMK-HTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIED 167 (174)
Q Consensus 95 ~~~~-~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~ 167 (174)
.... |+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++||++|++|++.++++ ++|.++|+|..
T Consensus 72 ~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 72 FPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 7655 8999999999999999999999999999999999999999999999999999999985 99999999963
No 25
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-40 Score=244.94 Aligned_cols=164 Identities=74% Similarity=1.258 Sum_probs=157.6
Q ss_pred CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEE---eecCceEeeCCCCCC
Q 030603 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR---IIPNFMCQGGDFTRG 77 (174)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~r---i~~~~~iq~G~~~~~ 77 (174)
|.||+||||+.+++++.|+++++|+.|..|++++||..||++.++.+ |++..||| .++++++|+||.+..
T Consensus 1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~h 73 (167)
T KOG0865|consen 1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCH 73 (167)
T ss_pred CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCccccc
Confidence 78999999999999999999999999999999999999999988776 99999999 345799999999989
Q ss_pred CCCCCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCC
Q 030603 78 NGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG 157 (174)
Q Consensus 78 ~~~~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~ 157 (174)
++.++.++++..+.+|++.++|..+|.|+|++.+||+++|||||++....+||++++|||+|.+||+++++++..+..++
T Consensus 74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g 153 (167)
T KOG0865|consen 74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG 153 (167)
T ss_pred CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccceEEeEeeee
Q 030603 158 RTSQTVVIEDCGQL 171 (174)
Q Consensus 158 ~P~~~i~I~~~g~l 171 (174)
+|.++|.|.+||+|
T Consensus 154 k~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 154 KTSKKITIADCGQL 167 (167)
T ss_pred cccccEEEecCCcC
Confidence 99999999999986
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=7.5e-37 Score=231.92 Aligned_cols=128 Identities=32% Similarity=0.546 Sum_probs=107.0
Q ss_pred CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCC--------------
Q 030603 14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNG-------------- 79 (174)
Q Consensus 14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~-------------- 79 (174)
.|+.|+|+|+||++.||++|+||++||+ .| ||+++.||||+|+||+|+|++.....
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~-------~g---~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p 72 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVE-------RG---FYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIP 72 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHH-------hC---CcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccc
Confidence 5899999999999999999999999994 33 49999999999999999999863310
Q ss_pred ------CCCCcccCCcc-----CCCccCCCCCCCeEEEeeecC--CCCCcceEEEEcc-------CCCCCCCCceEEEEE
Q 030603 80 ------TGGESIYGMKF-----ADENFKMKHTGPGILSMANAG--PNTNGSQFFICTQ-------KTPWLDGKHVVFGKV 139 (174)
Q Consensus 80 ------~~~~~~~~~~~-----~~e~~~~~~~~~G~v~~~~~~--~~~~~s~FfItl~-------~~~~ld~~~~vfG~V 139 (174)
..+.++++..+ .++...++|+.+|+|||++.+ +++++|||||+++ +.|+||++|+|||+|
T Consensus 73 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~V 152 (176)
T cd01924 73 LEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV 152 (176)
T ss_pred ceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEE
Confidence 01122333332 244567888999999999987 6999999999998 789999999999999
Q ss_pred EcChHHHHHHHh
Q 030603 140 VDGYSVIKDMEK 151 (174)
Q Consensus 140 ~~G~~vl~~I~~ 151 (174)
++|||||++|+.
T Consensus 153 veG~dvl~~I~~ 164 (176)
T cd01924 153 TDGLDILRELKV 164 (176)
T ss_pred ecCHHHHHhhcC
Confidence 999999999975
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-36 Score=244.11 Aligned_cols=147 Identities=43% Similarity=0.751 Sum_probs=139.6
Q ss_pred EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603 15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN 94 (174)
Q Consensus 15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 94 (174)
|+.|+|.||||...||++|+||++|| ..|+ |+|+.|||++|+|.+|||+++ +++.|+.+++|.++.+|.
T Consensus 19 TT~G~I~iELW~kE~P~acrnFiqKO-------Gegy---y~nt~fhrlvp~f~~Qggdp~-~~gtGgesiyg~~fadE~ 87 (439)
T KOG0885|consen 19 TTKGDIDIELWAKECPKACRNFIQLC-------LEGY---YDNTEFHRLVPGFLVQGGDPT-GTGTGGESIYGRPFADEF 87 (439)
T ss_pred eccCceeeeehhhhhhHHHHHHHHHH-------Hhcc---ccCceeeeeccchhcccCCCC-CCCCCccccccccchhhc
Confidence 89999999999999999999999999 5665 999999999999999999996 789999999999999998
Q ss_pred c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEE-cChHHHHHHHhCCCCC-CCcccceEEeEeeee
Q 030603 95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVV-DGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171 (174)
Q Consensus 95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g~l 171 (174)
+ ++.+.++|+|+|++.+.+.+|||||+||+++|+|++++++||+|+ ..+-.+-+|..+.++. .||..+-+|.+|.+|
T Consensus 88 h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 88 HPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVL 167 (439)
T ss_pred CcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEee
Confidence 7 788899999999999999999999999999999999999999999 5888899999999987 999999999999998
Q ss_pred c
Q 030603 172 A 172 (174)
Q Consensus 172 ~ 172 (174)
.
T Consensus 168 ~ 168 (439)
T KOG0885|consen 168 I 168 (439)
T ss_pred c
Confidence 5
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-35 Score=237.41 Aligned_cols=149 Identities=40% Similarity=0.665 Sum_probs=136.3
Q ss_pred CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCc----
Q 030603 14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMK---- 89 (174)
Q Consensus 14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~---- 89 (174)
+|++|+|+|+||-+.+|.+|.||++|| +..||+.|.||.|..+|.+|.|||+ +.+.||.++|+.-
T Consensus 6 eTtlGDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q 74 (479)
T KOG0415|consen 6 ETTLGDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQ 74 (479)
T ss_pred EeecccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeeccccc
Confidence 499999999999999999999999999 4558999999999999999999997 6899999888643
Q ss_pred ---cCCCc-cCCCCCCCeEEEeeecCCCCCcceEEEEccC-CCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccce
Q 030603 90 ---FADEN-FKMKHTGPGILSMANAGPNTNGSQFFICTQK-TPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTV 163 (174)
Q Consensus 90 ---~~~e~-~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~-~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i 163 (174)
+..|. +.+.|.+.|+|||++.|.|..||||||||++ +..||++|+|||+|.+|+|+|.+|+.+-++. ++|+++|
T Consensus 75 ~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdI 154 (479)
T KOG0415|consen 75 ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDI 154 (479)
T ss_pred chhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccce
Confidence 34454 4799999999999999999999999999975 5789999999999999999999999988888 9999999
Q ss_pred EEeEeeeecc
Q 030603 164 VIEDCGQLAE 173 (174)
Q Consensus 164 ~I~~~g~l~~ 173 (174)
+|.+.-+|+|
T Consensus 155 RI~HTiiLdD 164 (479)
T KOG0415|consen 155 RIKHTIILDD 164 (479)
T ss_pred eeeeeEEecC
Confidence 9999999987
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=8.4e-06 Score=69.14 Aligned_cols=146 Identities=17% Similarity=0.214 Sum_probs=111.2
Q ss_pred Eece----EEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCccc--CC
Q 030603 15 MNKG----RVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIY--GM 88 (174)
Q Consensus 15 t~~G----~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~--~~ 88 (174)
+..| -|.|+|+.+-+|.-++-|...|+ ..++++..|.+|...+++|.||..-....++.--+ +.
T Consensus 105 ~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q----------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 105 TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ----------DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred cCCCCeeeeEEeecccCCCcEEECCcCCcCc----------cceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 4556 89999999999999999999993 33599999999999999999986543333332111 11
Q ss_pred -c--cCC--CccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccc
Q 030603 89 -K--FAD--ENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQT 162 (174)
Q Consensus 89 -~--~~~--e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~ 162 (174)
+ +++ .+..++|. .-++...+......+-+|++.-...+.+..+..|+|++.+|-++++.|....++. ..|+.+
T Consensus 175 ~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~ 253 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP 253 (558)
T ss_pred CcccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc
Confidence 1 111 22344444 4555555555555677999999999999999999999999999999999999998 889999
Q ss_pred eEEeEeeee
Q 030603 163 VVIEDCGQL 171 (174)
Q Consensus 163 i~I~~~g~l 171 (174)
+.|.+..+.
T Consensus 254 y~l~~Velg 262 (558)
T KOG0882|consen 254 YGLMHVELG 262 (558)
T ss_pred cccceeehh
Confidence 999887653
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=97.29 E-value=0.0024 Score=55.15 Aligned_cols=102 Identities=24% Similarity=0.400 Sum_probs=65.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM 97 (174)
Q Consensus 18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 97 (174)
=.+.+||.++ ||.++++|+.+.+ .|. + .+.+. .+-+|. .+...+...+.|+ .
T Consensus 201 Ty~evE~~~~-~p~s~EH~la~~~-------~G~---~---~Vd~~-tsTfi~-----------d~~L~g~~~p~En--~ 252 (503)
T TIGR03268 201 TYVEVELDPN-APVSVEHFLALME-------DGT---F---RVDYR-TSTFIS-----------DDSLRGLDKPEEN--I 252 (503)
T ss_pred EEEEEEEcCC-CChhHHHHHHHHh-------CCe---E---EEeee-ecceEe-----------cccccCccCCccc--c
Confidence 4567788766 8999999999984 332 1 11111 111111 1122233444444 4
Q ss_pred CCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHH
Q 030603 98 KHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDME 150 (174)
Q Consensus 98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~ 150 (174)
....+|+|.+.+.|.+.. ..||...+.+. .-.|+|+|+|+.|||+++--+
T Consensus 253 ~~R~rGtVTVRn~G~G~G--~VYIYredr~s-s~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 253 EKRRRGAVTVRNSGVGEG--RVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred CcccceeEEEEeeccCce--eEEEEcCCCCC-CcccceeEEEecceeeeeccc
Confidence 445699999999875433 78999877663 246999999999999986443
No 31
>PRK00969 hypothetical protein; Provisional
Probab=97.23 E-value=0.0028 Score=54.88 Aligned_cols=102 Identities=25% Similarity=0.415 Sum_probs=65.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM 97 (174)
Q Consensus 18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 97 (174)
=.+.++|.++ ||.++++|+.+.+ .|. + .+.+. .+-+|. .+...+...+.|+ .
T Consensus 204 Ty~eve~~~~-~p~s~EH~la~~~-------~G~---f---~Vd~~-tstfI~-----------d~~L~g~~~p~En--~ 255 (508)
T PRK00969 204 TYVEVELDPG-APKSVEHFLALLE-------DGT---F---EVDFE-TSTFIA-----------DDRLQGLKIPEEN--F 255 (508)
T ss_pred EEEEEEEcCC-CCchHHHHHHHHh-------CCe---E---EEeee-ecceEe-----------eccccCccCCccc--c
Confidence 4567788876 8999999999984 332 1 11111 111111 1122233444454 4
Q ss_pred CCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHH
Q 030603 98 KHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDME 150 (174)
Q Consensus 98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~ 150 (174)
....+|+|++.+.|.+.. ..||...+.+. .-.|+|+|+|+.|||+++--.
T Consensus 256 ~~R~~GtVTVRt~G~g~G--~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 256 EPRRRGTVTVRTAGVGVG--KVYIYREDRPS-SLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred CccccceEEEEeeccCce--eEEEECCCCCC-CccceeEEEEecceeeeeccc
Confidence 445699999999875433 78999887663 246999999999999986443
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.87 E-value=0.016 Score=50.14 Aligned_cols=115 Identities=17% Similarity=0.280 Sum_probs=69.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM 97 (174)
Q Consensus 18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 97 (174)
--|.|+||.+.||.++.-|.++.--.. . .-|+ ..+|-..++.++.-|+... ...+.+|+..-
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~tGL~~-~-~VG~------L~v~F~~~d~~mFk~~~~~----------~k~LiPEN~P~ 436 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFTGLKT-K-PVGR------LPVHFAFKEMIMFKGNKEL----------AKGLIPENTPE 436 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhcCCcc-c-ccce------eEEEEEeCCeeEeccCchh----------ccccCCCCCCC
Confidence 468999999999999999998862110 0 1122 3555566765555333321 34466666655
Q ss_pred CCCCCeEEEeeecCCCCCcceEEEEccCCC-------CCCCCceEEEEEEcChHHHHHHHhC
Q 030603 98 KHTGPGILSMANAGPNTNGSQFFICTQKTP-------WLDGKHVVFGKVVDGYSVIKDMEKV 152 (174)
Q Consensus 98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~-------~ld~~~~vfG~V~~G~~vl~~I~~~ 152 (174)
....+|.+++-+......| -.=|-|.+.. .+++ --++|+|+++++.|.++..-
T Consensus 437 ~~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 437 DKVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKEG 496 (503)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-cceEEEecCChhHhcccccC
Confidence 5666888887765321111 1122223322 3443 45789999999999887663
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.007 Score=50.98 Aligned_cols=103 Identities=25% Similarity=0.407 Sum_probs=65.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM 97 (174)
Q Consensus 18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 97 (174)
=.+.++|.++ +|+++++|++|.. +|. .=.....|.++. .++....+.+.|+ .
T Consensus 203 Ty~eve~s~n-sP~saEH~lalme-------dG~-------lri~~~tntfis-----------~~~lq~~~~~~en--~ 254 (512)
T COG4070 203 TYFEVELSRN-SPKSAEHFLALME-------DGT-------LRIDVTTNTFIS-----------DDTLQEEKVPEEN--F 254 (512)
T ss_pred EEEEEEeCCC-CchhHHHHHHHhh-------cce-------EEEEEeccceee-----------ccccccccCChhh--h
Confidence 5678888877 8999999999983 332 111122332222 1112233445554 4
Q ss_pred CCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHh
Q 030603 98 KHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEK 151 (174)
Q Consensus 98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~ 151 (174)
....+|+++..+.|.++. .-||.-.+-+. ...|.|+|+|.+||++++--.+
T Consensus 255 d~RerG~iTvRn~GvgeG--rvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 255 DLRERGAITVRNVGVGEG--RVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhhhcceEEEEeeecccc--eEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 445689999998774433 67888766543 2359999999999998875443
No 34
>PRK00969 hypothetical protein; Provisional
Probab=96.46 E-value=0.046 Score=47.57 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=69.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM 97 (174)
Q Consensus 18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 97 (174)
--|.|+||.+.||.++.-|.++.--... .-| -..+|-..++.++.-|+... ...+.+|+..-
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~tGL~~~--~VG------~L~v~F~~~d~~lFk~~~~~----------~k~liPEN~P~ 439 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVTGLKTK--PVG------KLPVYFKYEDTYLFKGNIEY----------AKGLLPENTPE 439 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhcCCccc--ccc------eeEEEEEeCCeEEEccChhh----------ccccCCCCCCC
Confidence 4689999999999999999998621100 111 23566667776666444332 34466677666
Q ss_pred CCCCCeEEEeeecCCCCCcceEEEEccCCC-------CCCCCceEEEEEEcChHHHHHHHhC
Q 030603 98 KHTGPGILSMANAGPNTNGSQFFICTQKTP-------WLDGKHVVFGKVVDGYSVIKDMEKV 152 (174)
Q Consensus 98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~-------~ld~~~~vfG~V~~G~~vl~~I~~~ 152 (174)
....+|.+++-+......| -.=|-+.+.. .+++ --++|+|+ +++-|.++..-
T Consensus 440 ~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKeG 498 (508)
T PRK00969 440 DKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKEG 498 (508)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhcccccC
Confidence 6677888887764321111 1122223322 2333 56899999 89988887663
No 35
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=95.99 E-value=0.053 Score=39.92 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=54.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCc--eEeeCCCCCCCCCCCCcccCCccCCCcc
Q 030603 18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNF--MCQGGDFTRGNGTGGESIYGMKFADENF 95 (174)
Q Consensus 18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 95 (174)
-.++.+|..|.||+||+.|.+..- |.+..+|-...+. |+.-++... .....||.
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~LP-------------~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~ 63 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEALP-------------LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENH 63 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SE
T ss_pred eEEEEEEcccCChHHHHHHHHhCC-------------CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcC
Confidence 378899999999999999999972 5555555555443 444344320 12334544
Q ss_pred CCCCCCCeEEEee---ecCC--CCC-cceEEEEccCCCC-CCC-----CceEEEEEEcChHHHHHHHh
Q 030603 96 KMKHTGPGILSMA---NAGP--NTN-GSQFFICTQKTPW-LDG-----KHVVFGKVVDGYSVIKDMEK 151 (174)
Q Consensus 96 ~~~~~~~G~v~~~---~~~~--~~~-~s~FfItl~~~~~-ld~-----~~~vfG~V~~G~~vl~~I~~ 151 (174)
..... +|-|.+. .... +.. -++.=|..+-..- +.. --.+|++|.+|+|-|.++.+
T Consensus 64 T~~P~-pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 64 TVTPI-PGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACR 130 (147)
T ss_dssp ESS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHH
T ss_pred cccCC-CCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHH
Confidence 44333 6777766 1111 111 1333333332211 111 15799999999997766643
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.063 Score=45.42 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=61.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHhcCC-CCCCCCCccccccCCEEEEeecC--ceEeeCCCCCCCCCCCCcccCCccCCCcc
Q 030603 19 RVVMELFADVTPKTAENFRALCTGE-KGIGMSGKPLHYKGSTFHRIIPN--FMCQGGDFTRGNGTGGESIYGMKFADENF 95 (174)
Q Consensus 19 ~i~i~L~~~~aP~~~~nF~~l~~~~-~~~~~~g~~~~y~g~~f~ri~~~--~~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 95 (174)
-|.||||.+.||.++.-|.++..-. ++ -|+ ..+|-..++ .++.-|+... +..+.+|+.
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~kp---VGk------L~Vhfay~d~~~vmfegn~~~----------~K~llPEN~ 437 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKTKP---VGK------LKVHFAYDDTYLVMFEGNAVL----------AKGLLPENT 437 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhccccccc---ccc------eEEEEEeCCceEEEEcCChHH----------hccCCCCCC
Confidence 5899999999999999999886321 11 222 345555555 2333333221 233444544
Q ss_pred CCCCCCCeEEEeeecCCCCCcceEEEEccCCC-------CCCCCceEEEEEEcChHHHHHHHhC
Q 030603 96 KMKHTGPGILSMANAGPNTNGSQFFICTQKTP-------WLDGKHVVFGKVVDGYSVIKDMEKV 152 (174)
Q Consensus 96 ~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~-------~ld~~~~vfG~V~~G~~vl~~I~~~ 152 (174)
......+|.++.-+....-.| -.-+-|.+.. .+. .-.++|+|++|.+-|..|...
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe-~TNiIGrIveg~e~l~~ikeG 499 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFE-GTNIIGRIVEGPERLIGIKEG 499 (512)
T ss_pred chhheecccccccccchhccc-eeEEEeccccccCCCCCccc-cceeehhhccChHHhcccccC
Confidence 444444444443332110000 0111222221 232 356899999999999888763
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=59.44 E-value=21 Score=25.17 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=28.2
Q ss_pred CCCeEEEeeecCCCCCcceEEEEccCCC-------CCCCCceEEEEEEcChHHHHHHHh
Q 030603 100 TGPGILSMANAGPNTNGSQFFICTQKTP-------WLDGKHVVFGKVVDGYSVIKDMEK 151 (174)
Q Consensus 100 ~~~G~v~~~~~~~~~~~s~FfItl~~~~-------~ld~~~~vfG~V~~G~~vl~~I~~ 151 (174)
...|.|+.-..+. -|.|-.++.| ..-....++|+|..|.+.+.++..
T Consensus 60 ~~~GDi~Yw~pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 60 VEAGDIAYWPPGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp B-TTEEEEECCCT-----EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred ccCceEEEeCCCC-----EEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 4578887654332 3667666664 344568999999999998888765
No 38
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=58.76 E-value=7.2 Score=32.97 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=34.0
Q ss_pred CCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEE-cChHHHHHHHh
Q 030603 99 HTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVV-DGYSVIKDMEK 151 (174)
Q Consensus 99 ~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~-~G~~vl~~I~~ 151 (174)
...+|.|.+.+..-..-..|.-|++.+.|. |++.-|+|+|. +-+.+|+-|..
T Consensus 297 ~r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 297 ERKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp -B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred cccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 456899999987644455699999999986 88999999999 57888888864
No 39
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=51.37 E-value=20 Score=24.88 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHHh
Q 030603 18 GRVVMELFADVTPKTAENFRALC 40 (174)
Q Consensus 18 G~i~i~L~~~~aP~~~~nF~~l~ 40 (174)
|.-+++|+.+. |.+++.+.+-.
T Consensus 13 g~c~~eL~ee~-pE~vr~i~d~l 34 (126)
T COG2164 13 GHCTGELDEEN-PESVRRIYDSL 34 (126)
T ss_pred ceEEEEccccC-hHHHHHHHHhC
Confidence 89999999987 99999887765
No 40
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=42.65 E-value=34 Score=25.47 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=29.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeec
Q 030603 19 RVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIP 65 (174)
Q Consensus 19 ~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~ 65 (174)
.+.|-||.-.-|..+.|.+++|. ..|+..|.|.|
T Consensus 2 ~~~IvL~~PeIP~NTGNI~R~ca-------------~tga~LhlI~P 35 (155)
T COG0219 2 MLNIVLYQPEIPPNTGNIIRTCA-------------ATGAELHLIEP 35 (155)
T ss_pred ccEEEEECCCCCCchhHHHHHHH-------------hcCCeEEEEcc
Confidence 36788999999999999999995 56899999988
No 41
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=31.46 E-value=34 Score=19.36 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=7.9
Q ss_pred CCCeEEEEEEE
Q 030603 2 TNPRVFFDILI 12 (174)
Q Consensus 2 ~~p~v~~di~~ 12 (174)
.+|+||++|.-
T Consensus 15 gHPrVyl~l~~ 25 (40)
T PF10276_consen 15 GHPRVYLNLDD 25 (40)
T ss_dssp CCCCEEEE-TT
T ss_pred CCCeEEEecCC
Confidence 58999998653
No 42
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.63 E-value=40 Score=21.03 Aligned_cols=10 Identities=50% Similarity=0.956 Sum_probs=8.4
Q ss_pred CCCeEEEEEE
Q 030603 2 TNPRVFFDIL 11 (174)
Q Consensus 2 ~~p~v~~di~ 11 (174)
.+|+||+||.
T Consensus 35 ~HPrV~L~mg 44 (62)
T COG4391 35 DHPRVFLDMG 44 (62)
T ss_pred CCCEEEEEcC
Confidence 4899999984
No 43
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=26.10 E-value=65 Score=19.34 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=19.8
Q ss_pred EcChHHHHHHHhCCCCCCCcccceEEeE
Q 030603 140 VDGYSVIKDMEKVGSESGRTSQTVVIED 167 (174)
Q Consensus 140 ~~G~~vl~~I~~~~~~~~~P~~~i~I~~ 167 (174)
..|.+|++++++. .......-||.+++
T Consensus 4 ~sGv~vlRel~r~-~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 4 FSGVEVLRELARR-GGGRAAVMPVVFTS 30 (58)
T ss_pred ccHHHHHHHHHHh-cCCCCCcCCEEEeC
Confidence 4689999999998 44466666777665
No 44
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=25.28 E-value=1.8e+02 Score=18.13 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=19.9
Q ss_pred EECCEeceEEEEEEcCCCChHHHHHHHHHh
Q 030603 11 LIGKMNKGRVVMELFADVTPKTAENFRALC 40 (174)
Q Consensus 11 ~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~ 40 (174)
.+.+++.|.++++|.++ +...+.+++..
T Consensus 39 ~i~~~~~G~l~l~l~g~--~~~~~~a~~~L 66 (76)
T PF09383_consen 39 EIQGTPFGILILELPGD--DEEIEKAIAYL 66 (76)
T ss_dssp EETTEEEEEEEEEEES---HHHHHHHHHHH
T ss_pred EcCCeeEEEEEEEEECC--HHHHHHHHHHH
Confidence 34788999999999866 44466666655
No 45
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.45 E-value=48 Score=28.44 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=27.9
Q ss_pred CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhc
Q 030603 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCT 41 (174)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~ 41 (174)
++||-+.+|+-. |-.|||+=+-.+. -+++.||.-|+-
T Consensus 194 fRNPciSiDFGT--TL~GRIt~d~~Py--aktiGNfcGLAG 230 (448)
T PF09887_consen 194 FRNPCISIDFGT--TLAGRITNDEEPY--AKTIGNFCGLAG 230 (448)
T ss_pred ccCceeEeeccc--cccceecCCCCcH--HHHhhhhhhhcc
Confidence 579999999652 4449998775554 478999999983
No 46
>PRK14451 acylphosphatase; Provisional
Probab=24.31 E-value=1.1e+02 Score=20.25 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=22.3
Q ss_pred CCEeceEEEEEEcCCCChHHHHHHHHHhc
Q 030603 13 GKMNKGRVVMELFADVTPKTAENFRALCT 41 (174)
Q Consensus 13 ~~t~~G~i~i~L~~~~aP~~~~nF~~l~~ 41 (174)
.+..-|++.|++-++ +..++.|++.+.
T Consensus 36 ~N~~dG~Vei~~qG~--~~~i~~f~~~l~ 62 (89)
T PRK14451 36 RNLADGRVEVFACGK--EDKLEEFYTWLQ 62 (89)
T ss_pred EECCCCCEEEEEEEC--HHHHHHHHHHHh
Confidence 345668999999885 788999999994
No 47
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.96 E-value=52 Score=28.15 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=27.6
Q ss_pred CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhc
Q 030603 1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCT 41 (174)
Q Consensus 1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~ 41 (174)
++||-+.+|+-. |-.|||+=+.-+. -+++.||+-|+-
T Consensus 191 fRNPciSiDFGT--TLaGRIt~d~~Py--aktiGNfcGLAG 227 (445)
T TIGR03285 191 FRNPCISIDFGT--TLAGRITNDDLPY--AKTIGNFCGLAG 227 (445)
T ss_pred ccCceEEeeccc--cccceecCCCCch--HHhhhhhhhhcc
Confidence 579999999652 4449998775444 478999999983
No 48
>KOG1816 consensus Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.35 E-value=1.1e+02 Score=25.22 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=24.8
Q ss_pred EEEEcChHHHHHHHhCCCCC-----CCcccceEEeEeeeec
Q 030603 137 GKVVDGYSVIKDMEKVGSES-----GRTSQTVVIEDCGQLA 172 (174)
Q Consensus 137 G~V~~G~~vl~~I~~~~~~~-----~~P~~~i~I~~~g~l~ 172 (174)
|+|+-==..|++++++-... -.=....+.+|||||+
T Consensus 38 gKIilPPSaL~~Ls~lnI~yPMlFkLtn~~~~r~THcGVLE 78 (308)
T KOG1816|consen 38 GKIILPPSALDRLSSLNITYPMLFKLTNVDVDRVTHCGVLE 78 (308)
T ss_pred CeEEeCHHHHHHHHHhcCCCceEEEEeccccceeeeeeEEE
Confidence 56776667888888875544 1223446999999996
No 49
>PRK14452 acylphosphatase; Provisional
Probab=21.29 E-value=1.3e+02 Score=20.83 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=21.6
Q ss_pred CCEeceEEEEEEcCCCChHHHHHHHHHhc
Q 030603 13 GKMNKGRVVMELFADVTPKTAENFRALCT 41 (174)
Q Consensus 13 ~~t~~G~i~i~L~~~~aP~~~~nF~~l~~ 41 (174)
.+..-|+|.|++-++ +..++.|++++.
T Consensus 53 ~N~~dGsVeI~~qG~--~~~ve~F~~~l~ 79 (107)
T PRK14452 53 RNLSDGSVEVQAEGP--PLALSELRAWCE 79 (107)
T ss_pred EECCCCCEEEEEEcC--HHHHHHHHHHHh
Confidence 345668899999776 679999999994
No 50
>PRK14442 acylphosphatase; Provisional
Probab=20.41 E-value=1.5e+02 Score=19.70 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=22.2
Q ss_pred ECCEeceEEEEEEcCCCChHHHHHHHHHhc
Q 030603 12 IGKMNKGRVVMELFADVTPKTAENFRALCT 41 (174)
Q Consensus 12 ~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~ 41 (174)
+.++.-|++.|++-++ +..++.|++.+.
T Consensus 36 V~N~~dG~Vei~~qG~--~~~i~~f~~~l~ 63 (91)
T PRK14442 36 VRNLDDGRVEVVWEGE--EDRAKALERWLG 63 (91)
T ss_pred EEECCCCCEEEEEEcC--HHHHHHHHHHHh
Confidence 3456678999999876 667999999994
Done!