BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030604
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 78/163 (47%), Gaps = 16/163 (9%)
Query: 7 NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT-----NDKACKNCRK 61
++ C+ CGK GH A DC + RLC NC KPGH+ DCT K C NC +
Sbjct: 2 SQKACYVCGKIGHLAEDCDSE-------RLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGE 54
Query: 62 TGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYV 121
TGH+ +C + C CN GH++R+CP+ + GG +
Sbjct: 55 TGHVRSECTVQ-RCFNCNQTGHISRECPEPKKTSRFSKVSCYK--CGGPNHMAKDCMKED 111
Query: 122 GYHDVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPSG 164
G + C +C Q GHMSRDC +C NC GH++ +CP
Sbjct: 112 GISGLKCYTCGQAGHMSRDCQNDR-LCYNCNETGHISKDCPKA 153
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 31/118 (26%)
Query: 52 NDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGG 111
+ KAC C K GH+A DC +E +C CN GHV C ++ +
Sbjct: 2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQ------------- 48
Query: 112 DGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPSGRIADR 169
C +C + GH+ +C + C NC GH++ ECP + R
Sbjct: 49 ----------------CYNCGETGHVRSECT--VQRCFNCNQTGHISRECPEPKKTSR 88
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLR--LCNNCYKPGHIAADCTNDK--------ACKNCR 60
C +CGK GH AR+C S GD R C C + GH++ +C N+ C C
Sbjct: 18 CRNCGKEGHYAREC-PEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76
Query: 61 KTGHIARDCQNEP--------VCNLCNIAGHVARQCPKGDSLGERGG-----GGGGERGG 107
+ GH++RDC N C C GH++R CP G RGG G G +GG
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQG-GSRGGYGQKRGRSGAQGG 135
Query: 108 GGG-------GDGG-------GGGGRYVGYHDVICRSCNQMGHMSRDCVGPL-------- 145
G GD G G G Y G D C C GH+SRDC
Sbjct: 136 YSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGD 195
Query: 146 IICRNCGGRGHMAYECPS 163
C CG GHM+ ECPS
Sbjct: 196 RKCYKCGESGHMSRECPS 213
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 83/221 (37%), Gaps = 62/221 (28%)
Query: 1 MASNCHNEG--------ICHSCGKTGHRARDCSTHVQSGGDLRL-CNNCYKPGHIAADCT 51
M+ C NE C CG+ GH +RDC + G C C + GH++ DC
Sbjct: 54 MSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCP 113
Query: 52 N------------------------DKACKNCRKTGHIARDCQN---------EPVCNLC 78
+ D+ C C GHI+RDC N + C C
Sbjct: 114 SSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKC 173
Query: 79 NIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGG-----GGGRYVGYHDVICRSCNQ 133
AGH++R CP G + G G G+R G+ G G D C C +
Sbjct: 174 GDAGHISRDCPNG----QGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGK 229
Query: 134 MGHMSRDCVGPLI-----------ICRNCGGRGHMAYECPS 163
GH+SR+C C CG GH++ +CPS
Sbjct: 230 PGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPS 270
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 41/134 (30%)
Query: 52 NDKACKNCRKTGHIARDC--------QNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGG 103
+ +C+NC K GH AR+C + C C GH++R+CP G G
Sbjct: 14 SSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGA---- 69
Query: 104 ERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPL-------IICRNCGGRGH 156
+ C C + GHMSRDC C CG GH
Sbjct: 70 ----------------------MTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGH 107
Query: 157 MAYECPSGRIADRG 170
++ +CPS + RG
Sbjct: 108 LSRDCPSSQGGSRG 121
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 39/161 (24%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT---NDKACKNCRKTGHIAR 67
C++CG+ GH+AR+C+ +C NC + GH A++CT +K C C GH+ R
Sbjct: 19 CYNCGENGHQARECT-------KGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVR 71
Query: 68 DCQNEP------VCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYV 121
DC + P C C GH+AR C +G GGR+
Sbjct: 72 DCPSSPNPRQGAECYKCGRVGHIARDCRT---------------------NGQQSGGRFG 110
Query: 122 GYH-DVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 161
G+ ++ C +C GH +RDC + C +CG GH ++EC
Sbjct: 111 GHRSNMNCYACGSYGHQARDCTM-GVKCYSCGKIGHRSFEC 150
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 64/166 (38%), Gaps = 36/166 (21%)
Query: 1 MASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDK------ 54
A C IC++C +TGH+A +C+ Q + C C GH+ DC +
Sbjct: 28 QARECTKGSICYNCNQTGHKASECTEPQQE----KTCYACGTAGHLVRDCPSSPNPRQGA 83
Query: 55 ACKNCRKTGHIARDC--------------QNEPVCNLCNIAGHVARQCPKGDSLGERGGG 100
C C + GHIARDC ++ C C GH AR C G G
Sbjct: 84 ECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKI 143
Query: 101 GGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLI 146
G DG +C CNQ GH++ +C P+I
Sbjct: 144 GHRSFECQQASDG------------QLCYKCNQPGHIAVNCTSPVI 177
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 55/144 (38%), Gaps = 44/144 (30%)
Query: 37 CNNCYKPGHIAADCTNDKACKNCRKTGHIARDC---QNEPVCNLCNIAGHVARQCPKGDS 93
C NC + GH A +CT C NC +TGH A +C Q E C C AGH+ R CP S
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCP--SS 76
Query: 94 LGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVG---------- 143
R G C C ++GH++RDC
Sbjct: 77 PNPRQGAE--------------------------CYKCGRVGHIARDCRTNGQQSGGRFG 110
Query: 144 ---PLIICRNCGGRGHMAYECPSG 164
+ C CG GH A +C G
Sbjct: 111 GHRSNMNCYACGSYGHQARDCTMG 134
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 127 ICRSCNQMGHMSRDCVGPLI--ICRNCGGRGHMAYECPSGRIADRGYRRY 174
IC +CNQ GH + +C P C CG GH+ +CPS +G Y
Sbjct: 37 ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECY 86
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4
PE=2 SV=2
Length = 1156
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 57/148 (38%), Gaps = 54/148 (36%)
Query: 35 RLCNNCYKPGHIAADCTNDKA----CKNCRKTGHIARDCQNEPV----CNLCNIAGHVAR 86
R C+NC + GHI+ +C K C+NC + GH A DC V C C I GH A
Sbjct: 570 RGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAV 629
Query: 87 QC-----PKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDC 141
C P+G CR+C Q GH ++DC
Sbjct: 630 DCDQPKVPRGP-----------------------------------CRNCGQEGHFAKDC 654
Query: 142 ------VGPLIICRNCGGRGHMAYECPS 163
+ P CR C GH YECP+
Sbjct: 655 QNERVRMEPTEPCRRCAEEGHWGYECPT 682
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA----CKNCRKTGHIA 66
C +C + GH A DC G C NC GH A DC K C+NC + GH A
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGP---CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFA 651
Query: 67 RDCQNEPV-------CNLCNIAGHVARQCP 89
+DCQNE V C C GH +CP
Sbjct: 652 KDCQNERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 2 ASNCHN----EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA-- 55
AS+C G C +CG GH A DC G C NC + GH A DC N++
Sbjct: 605 ASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGP---CRNCGQEGHFAKDCQNERVRM 661
Query: 56 -----CKNCRKTGHIARDCQNEP 73
C+ C + GH +C P
Sbjct: 662 EPTEPCRRCAEEGHWGYECPTRP 684
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 128 CRSCNQMGHMSRDCVGPLI---ICRNCGGRGHMAYECPSGRI 166
CR+C Q+GH + DC P + CRNCG GH A +C ++
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKV 636
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 73/175 (41%), Gaps = 38/175 (21%)
Query: 11 CHSCGKTGHRARDCST----------------HVQSGGDLRLCNNCYKPGHIAADC--TN 52
C CG+TGH AR+C T S +C C + GH+A DC
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 53 DKACKNCRKTGHIARDCQN-----EPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGG 107
DKAC NC + GHIA+DC+ E C C GH+AR C D E+ GE G
Sbjct: 66 DKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD---EQKCYSCGEFGH 122
Query: 108 GGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 161
V C C + GH++ +C + C CG GH+A EC
Sbjct: 123 IQKDCT-----------KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 8 EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 67
E C++CGK GH ARDC D + C +C + GHI DCT K C C +TGH+A
Sbjct: 90 EQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAI 143
Query: 68 DCQ--NEPVCNLCNIAGHVARQC 88
+C +E C C +GH+AR+C
Sbjct: 144 NCSKTSEVNCYRCGESGHLAREC 166
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 7 NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACKNCRKTGH 64
+E C+SCG+ GH +DC T V+ C C + GH+A +C T++ C C ++GH
Sbjct: 110 DEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNCYRCGESGH 161
Query: 65 IARDCQNEPV 74
+AR+C E
Sbjct: 162 LARECTIEAT 171
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 71/188 (37%), Gaps = 58/188 (30%)
Query: 11 CHSCGKTGHRARDC------STHVQSGGDLRLCNNCYKPGHIAADCTN------------ 52
C++CG+ GH ++DC + C NC GH A DCT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 53 -DKACKNCRKTGHIARDCQNEPV---------------CNLCNIAGHVARQCPKGDSLGE 96
+ C C GH+ARDC + V C C GH AR C + + G
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221
Query: 97 RGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVG---PLIICRNCGG 153
GGGG C SC +GH++RDC P C CGG
Sbjct: 222 VRSGGGGSG---------------------TCYSCGGVGHIARDCATKRQPSRGCYQCGG 260
Query: 154 RGHMAYEC 161
GH+A +C
Sbjct: 261 SGHLARDC 268
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 51/156 (32%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLR--------LCNNCYKPGHIAADCTNDKACKNCRK- 61
C++CG GH ARDC+ GD R C C GH A DCT A N R
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Query: 62 ------------TGHIARDC--QNEPV--CNLCNIAGHVARQCPKGDSLGERGGGGGGER 105
GHIARDC + +P C C +GH+AR C +R
Sbjct: 226 GGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCD--------------QR 271
Query: 106 GGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDC 141
G GGGG+ D C C + GH +R+C
Sbjct: 272 GSGGGGN------------DNACYKCGKEGHFAREC 295
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 66/172 (38%), Gaps = 57/172 (33%)
Query: 37 CNNCYKPGHIAADCTNDKA-------------CKNCRKTGHIARDCQN------------ 71
C NC + GHI+ DC C NC TGH ARDC +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 72 -EPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRS 130
C C GHVAR C ++ G G +RG GG+ G C +
Sbjct: 162 GNDGCYTCGDVGHVARDCT------QKSVGNGDQRGAVKGGNDG-------------CYT 202
Query: 131 CNQMGHMSRDCVGPLI------------ICRNCGGRGHMAYECPSGRIADRG 170
C +GH +RDC + C +CGG GH+A +C + R RG
Sbjct: 203 CGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRG 254
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 8 EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT--------NDKACKNC 59
G C+SCG GH ARDC+T Q R C C GH+A DC ND AC C
Sbjct: 229 SGTCYSCGGVGHIARDCATKRQPS---RGCYQCGGSGHLARDCDQRGSGGGGNDNACYKC 285
Query: 60 RKTGHIARDCQN 71
K GH AR+C +
Sbjct: 286 GKEGHFARECSS 297
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 65/160 (40%), Gaps = 48/160 (30%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDK-----ACKNCRKTGH 64
IC+ CG++GH A+DC C NC + GHIA DC K C NC K GH
Sbjct: 53 ICYRCGESGHLAKDCDLQEDEA-----CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 107
Query: 65 IARDCQ--NEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVG 122
+ARDC +E C C GH+ + C K
Sbjct: 108 LARDCDHADEQKCYSCGEFGHIQKDCTK-------------------------------- 135
Query: 123 YHDVICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 161
V C C + GH++ +C + C CG GH+A EC
Sbjct: 136 ---VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 8 EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 67
E C++CGK GH ARDC D + C +C + GHI DCT K C C +TGH+A
Sbjct: 96 EQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAI 149
Query: 68 DCQ--NEPVCNLCNIAGHVARQC 88
+C +E C C +GH+AR+C
Sbjct: 150 NCSKTSEVNCYRCGESGHLAREC 172
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 7 NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACKNCRKTGH 64
+E C+SCG+ GH +DC T V+ C C + GH+A +C T++ C C ++GH
Sbjct: 116 DEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNCYRCGESGH 167
Query: 65 IARDCQNEPV 74
+AR+C E
Sbjct: 168 LARECTIEAT 177
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 66/160 (41%), Gaps = 49/160 (30%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDK-----ACKNCRKTGH 64
IC+ CG++GH A+DC + C NC + GHIA DC K C NC K GH
Sbjct: 53 ICYRCGESGHLAKDCDLQEDA------CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106
Query: 65 IARDCQ--NEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVG 122
+ARDC +E C C GH+ + C K
Sbjct: 107 LARDCDHADEQKCYSCGEFGHIQKDCTK-------------------------------- 134
Query: 123 YHDVICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 161
V C C + GH++ +C + C CG GH+A EC
Sbjct: 135 ---VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 1 MASNCH-NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACK 57
+A +C E C++CG+ GH A+DC + + C NC KPGH+A DC +++ C
Sbjct: 63 LAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCY 120
Query: 58 NCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSL 94
+C + GHI +DC + C C GHVA C K +
Sbjct: 121 SCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEV 156
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 8 EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 67
E C++CGK GH ARDC D + C +C + GHI DCT K C C +TGH+A
Sbjct: 95 EQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAI 148
Query: 68 DCQ--NEPVCNLCNIAGHVARQC 88
+C +E C C +GH+AR+C
Sbjct: 149 NCSKTSEVNCYRCGESGHLAREC 171
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 75 CNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYH-DVICRSCNQ 133
C C +GH AR+CP G GG G G R G GG G ++V IC C +
Sbjct: 6 CFKCGRSGHWARECPTG------GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGE 59
Query: 134 MGHMSRDCVGPLIICRNCGGRGHMAYECPSGR 165
GH+++DC C NCG GH+A +C +
Sbjct: 60 SGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK 91
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 66/160 (41%), Gaps = 49/160 (30%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDK-----ACKNCRKTGH 64
IC+ CG++GH A+DC + C NC + GHIA DC K C NC K GH
Sbjct: 53 ICYRCGESGHLAKDCDLQEDA------CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106
Query: 65 IARDCQ--NEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVG 122
+ARDC +E C C GH+ + C K
Sbjct: 107 LARDCDHADEQKCYSCGEFGHIQKDCTK-------------------------------- 134
Query: 123 YHDVICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 161
V C C + GH++ +C + C CG GH+A EC
Sbjct: 135 ---VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 1 MASNCH-NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACK 57
+A +C E C++CG+ GH A+DC + + C NC KPGH+A DC +++ C
Sbjct: 63 LAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCY 120
Query: 58 NCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSL 94
+C + GHI +DC + C C GHVA C K +
Sbjct: 121 SCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEV 156
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 8 EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 67
E C++CGK GH ARDC D + C +C + GHI DCT K C C +TGH+A
Sbjct: 95 EQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAI 148
Query: 68 DCQ--NEPVCNLCNIAGHVARQC 88
+C +E C C +GH+AR+C
Sbjct: 149 NCSKTSEVNCYRCGESGHLAREC 171
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 75 CNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYH-DVICRSCNQ 133
C C +GH AR+CP G GG G G R G GG G ++V IC C +
Sbjct: 6 CFKCGRSGHWARECPTG------GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGE 59
Query: 134 MGHMSRDCVGPLIICRNCGGRGHMAYECPSGR 165
GH+++DC C NCG GH+A +C +
Sbjct: 60 SGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK 91
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 66/160 (41%), Gaps = 49/160 (30%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDK-----ACKNCRKTGH 64
IC+ CG++GH A+DC + C NC + GHIA DC K C NC K GH
Sbjct: 53 ICYRCGESGHLAKDCDLQEDA------CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106
Query: 65 IARDCQ--NEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVG 122
+ARDC +E C C GH+ + C K
Sbjct: 107 LARDCDHADEQKCYSCGEFGHIQKDCTK-------------------------------- 134
Query: 123 YHDVICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 161
V C C + GH++ +C + C CG GH+A EC
Sbjct: 135 ---VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 1 MASNCH-NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACK 57
+A +C E C++CG+ GH A+DC + + C NC KPGH+A DC +++ C
Sbjct: 63 LAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCY 120
Query: 58 NCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSL 94
+C + GHI +DC + C C GHVA C K +
Sbjct: 121 SCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEV 156
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 8 EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 67
E C++CGK GH ARDC D + C +C + GHI DCT K C C +TGH+A
Sbjct: 95 EQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAI 148
Query: 68 DCQ--NEPVCNLCNIAGHVARQC 88
+C +E C C +GH+AR+C
Sbjct: 149 NCSKTSEVNCYRCGESGHLAREC 171
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 75 CNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYH-DVICRSCNQ 133
C C +GH AR+CP G GG G G R G GG G ++V IC C +
Sbjct: 6 CFKCGRSGHWARECPTG------GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGE 59
Query: 134 MGHMSRDCVGPLIICRNCGGRGHMAYECPSGR 165
GH+++DC C NCG GH+A +C +
Sbjct: 60 SGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK 91
>sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster
GN=CG3800 PE=1 SV=1
Length = 165
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 68/180 (37%), Gaps = 53/180 (29%)
Query: 9 GICHSCGKTGHRARDCSTHVQSGG------------------------DLRLCNNCYKPG 44
C+ C + GH ARDCS G + C C + G
Sbjct: 5 ATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCNQFG 64
Query: 45 HIAADCTND-KACKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQCPKGDSLGERGGGG 101
H A C + + C C GHI++DC + P C CN GH R CP +++ ERG
Sbjct: 65 HFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCP--EAVNERGPT- 121
Query: 102 GGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 161
+V C CN+ GH+S++C C CG GH+ EC
Sbjct: 122 -----------------------NVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRL-CNNCYKPGHIAADC-TNDKACKNCRKTGHIAR 67
C+ C KTGH R+C V G + C C + GHI+ +C K C C K+GH+ R
Sbjct: 97 TCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRR 156
Query: 68 DCQNE 72
+C +
Sbjct: 157 ECDEK 161
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 66/160 (41%), Gaps = 49/160 (30%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDK-----ACKNCRKTGH 64
IC+ CG++GH A+DC + C NC + GHIA DC K C NC K GH
Sbjct: 46 ICYRCGESGHLAKDCDLQEDA------CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 99
Query: 65 IARDCQ--NEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVG 122
+ARDC +E C C GH+ + C K
Sbjct: 100 LARDCDHADEQKCYSCGEFGHIQKDCTK-------------------------------- 127
Query: 123 YHDVICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 161
V C C + GH++ +C + C CG GH+A EC
Sbjct: 128 ---VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 8 EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 67
E C++CGK GH ARDC D + C +C + GHI DCT K C C +TGH+A
Sbjct: 88 EQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAI 141
Query: 68 DCQ--NEPVCNLCNIAGHVARQC 88
+C +E C C +GH+AR+C
Sbjct: 142 NCSKTSEVNCYRCGESGHLAREC 164
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 1 MASNCH-NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACK 57
+A +C E C++CG+ GH A+DC + + C NC KPGH+A DC +++ C
Sbjct: 56 LAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCY 113
Query: 58 NCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSL 94
+C + GHI +DC + C C GHVA C K +
Sbjct: 114 SCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEV 149
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 127 ICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPSGR 165
IC C + GH+++DC C NCG GH+A +C +
Sbjct: 46 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK 84
>sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 19 HRARDCSTHVQSGGDLR-LCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNL 77
+R RD T SGG R LC C PGH A C + N R+ C L
Sbjct: 492 NRERDGQT--GSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQL 537
Query: 78 CNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDG 113
CN GH A+QC K D G G+R G G G
Sbjct: 538 CNGMGHNAKQCRKRD-------GNQGQRPGKGLSSG 566
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 9 GICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
G+C++CG GH C +SG C C GH A C
Sbjct: 507 GLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQC 548
Score = 33.5 bits (75), Expect = 0.76, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 27/87 (31%)
Query: 55 ACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGG 114
A N + G + +C C GH QCPK +R G ER
Sbjct: 489 AVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPK-----KRKSGNSRER--------- 534
Query: 115 GGGGRYVGYHDVICRSCNQMGHMSRDC 141
C+ CN MGH ++ C
Sbjct: 535 -------------CQLCNGMGHNAKQC 548
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1
Length = 1432
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 25 STHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNE 72
+ +V+ G+++ C C KPGHI DC N K C C K GH+ R+C+++
Sbjct: 358 AINVKGDGEVQRCYGCGKPGHIRRDCKNQK-CFKCGKPGHLQRNCKSK 404
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
C+ CGK GH RDC + C C KPGH+ +C
Sbjct: 370 CYGCGKPGHIRRDCKN--------QKCFKCGKPGHLQRNC 401
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 128 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPS 163
C C + GH+ RDC C CG GH+ C S
Sbjct: 370 CYGCGKPGHIRRDCKNQK--CFKCGKPGHLQRNCKS 403
>sp|O92956|POL_RSVSB Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain
Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 19 HRARDCSTHVQSGGDLR-LCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNL 77
+R RD T SGG R LC C PGH A C + N R+ C L
Sbjct: 492 NRERDGQT--GSGGRARRLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQL 537
Query: 78 CNIAGHVARQCPKGDS-LGERGGGG 101
C+ GH A+QC + DS G+R G G
Sbjct: 538 CDGMGHNAKQCRRRDSNQGQRPGRG 562
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
+C++CG GH C +SG C C GH A C
Sbjct: 508 LCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQC 548
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 27/87 (31%)
Query: 55 ACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGG 114
A N + G + +C C GH QCPK +R G ER
Sbjct: 489 AVVNRERDGQTGSGGRARRLCYTCGSPGHYQAQCPK-----KRKSGNSRER--------- 534
Query: 115 GGGGRYVGYHDVICRSCNQMGHMSRDC 141
C+ C+ MGH ++ C
Sbjct: 535 -------------CQLCDGMGHNAKQC 548
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens
GN=ZCCHC13 PE=2 SV=1
Length = 166
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 2 ASNCHNEG-ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACKN 58
A NC G IC++CG++GH A+DC + + C C + GH+A DC ++ C +
Sbjct: 57 AKNCVLLGNICYNCGRSGHIAKDCKDPKRE--RRQHCYTCGRLGHLARDCDRQKEQKCYS 114
Query: 59 CRKTGHIARDCQNEPVCNLCNIAGHVARQCPKG 91
C K GHI +DC + C C GHVA C K
Sbjct: 115 CGKLGHIQKDCA-QVKCYRCGEIGHVAINCSKA 146
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 13/88 (14%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA-----CKNCRKTGH 64
C+ CG++G A++C V G +C NC + GHIA DC + K C C + GH
Sbjct: 46 TCYCCGESGRNAKNC---VLLGN---ICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGH 99
Query: 65 IARDC--QNEPVCNLCNIAGHVARQCPK 90
+ARDC Q E C C GH+ + C +
Sbjct: 100 LARDCDRQKEQKCYSCGKLGHIQKDCAQ 127
>sp|Q04095|POL_RSVSA Gag-Pro-Pol polyprotein OS=Avian leukosis virus RSA GN=gag-pro-pol
PE=3 SV=2
Length = 1603
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 19 HRARDCSTHVQSGGDLR-LCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNL 77
+R RD T SGG R LC C PGH A C + N R+ C L
Sbjct: 492 NRERDGQT--GSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQL 537
Query: 78 CNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDG 113
C+ GH A+QC + D G G+R G G G
Sbjct: 538 CDGMGHNAKQCRRRD-------GNQGQRPGKGLSSG 566
Score = 37.4 bits (85), Expect = 0.047, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 9 GICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
G+C++CG GH C +SG C C GH A C
Sbjct: 507 GLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQC 548
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 27/87 (31%)
Query: 55 ACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGG 114
A N + G + +C C GH QCPK +R G ER
Sbjct: 489 AVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPK-----KRKSGNSRER--------- 534
Query: 115 GGGGRYVGYHDVICRSCNQMGHMSRDC 141
C+ C+ MGH ++ C
Sbjct: 535 -------------CQLCDGMGHNAKQC 548
>sp|P03322|GAG_RSVP Gag-Pro polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro PE=1 SV=1
Length = 701
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 19 HRARDCSTHVQSGGDLR-LCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNL 77
+R RD T SGG R LC C PGH A C + N R+ C L
Sbjct: 492 NRERDGQT--GSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQL 537
Query: 78 CNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDG 113
CN GH A+QC K D G G+R G G G
Sbjct: 538 CNGMGHNAKQCRKRD-------GNQGQRPGKGLSSG 566
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 9 GICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
G+C++CG GH C +SG C C GH A C
Sbjct: 507 GLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQC 548
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 27/87 (31%)
Query: 55 ACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGG 114
A N + G + +C C GH QCPK +R G ER
Sbjct: 489 AVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPK-----KRKSGNSRER--------- 534
Query: 115 GGGGRYVGYHDVICRSCNQMGHMSRDC 141
C+ CN MGH ++ C
Sbjct: 535 -------------CQLCNGMGHNAKQC 548
>sp|P31821|GAG_FIVT2 Gag polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=gag PE=3 SV=1
Length = 449
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 11 CHSCGKTGHRARDCS------THVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGH 64
C G G++ + + VQ+ G +C NC KPGH+A C K C NC K GH
Sbjct: 345 CQEVGSPGYKMQLLAEALTRVQTVQTKGPRLVCFNCKKPGHLARQCKEAKRCNNCGKPGH 404
Query: 65 IARDCQ--------NEPVCNLCNIAGHVARQCPKGDSLGER 97
+A +C NE V V + P + E+
Sbjct: 405 LAANCWQGGRKTSGNEKVGRAAAPVNQVQQIVPSAPPMEEK 445
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
+C +C K GH AR C + + CNNC KPGH+AA+C
Sbjct: 376 VCFNCKKPGHLARQCK-------EAKRCNNCGKPGHLAANC 409
>sp|O92954|GAG_RSVSB Gag-Pro polyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B)
GN=gag-pro PE=1 SV=1
Length = 701
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 19 HRARDCSTHVQSGGDLR-LCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNL 77
+R RD T SGG R LC C PGH A C + N R+ C L
Sbjct: 492 NRERDGQT--GSGGRARRLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQL 537
Query: 78 CNIAGHVARQCPKGDS-LGERGGGG 101
C+ GH A+QC + DS G+R G G
Sbjct: 538 CDGMGHNAKQCRRRDSNQGQRPGRG 562
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
+C++CG GH C +SG C C GH A C
Sbjct: 508 LCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQC 548
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 128 CRSCNQMGHMSRDCVGP-LIICRNCGGRGHMAYECPSGR 165
C +C + GHM R+C P I C CG GHMA +C +G+
Sbjct: 392 CFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQ 430
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA 55
C +CGK GH R+C Q C C K GH+A DC N +A
Sbjct: 392 CFNCGKFGHMQRECKAPRQIK-----CFKCGKIGHMAKDCKNGQA 431
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 17/77 (22%)
Query: 11 CHSCGKTGHRAR-------DCSTHVQSG-------GDLRLCNNCYKPGHIAADCTNDK-- 54
C G H+A+ + VQ G G L+ C NC K GH+ +C +
Sbjct: 353 CQGVGGPQHKAKLMVEMMSNGQNMVQVGPQKKGPRGPLK-CFNCGKFGHMQRECKAPRQI 411
Query: 55 ACKNCRKTGHIARDCQN 71
C C K GH+A+DC+N
Sbjct: 412 KCFKCGKIGHMAKDCKN 428
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 56 CKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQCPKGDS 93
C NC K GH+ R+C+ + C C GH+A+ C G +
Sbjct: 392 CFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQA 431
>sp|Q8N3Z6|ZCHC7_HUMAN Zinc finger CCHC domain-containing protein 7 OS=Homo sapiens
GN=ZCCHC7 PE=1 SV=2
Length = 543
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 120 YVGYHDVICRSCNQMGHMSRDCVGPLII--CRNCGGRGHMAYECPS 163
Y ++ICR+C++ GH+S++C P + C C RGH+ Y CP+
Sbjct: 235 YSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPA 280
Score = 37.4 bits (85), Expect = 0.048, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 49/160 (30%), Gaps = 58/160 (36%)
Query: 36 LCNNCYKPGHIAADCT---NDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGD 92
+C NC K GH++ +C + C C + GH+ C P+C C + + C
Sbjct: 242 ICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCP-APLCEYCPVPKMLDHSCLFRH 300
Query: 93 SLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCV---------- 142
S D C C+ +GH + C
Sbjct: 301 SW------------------------------DKQCDRCHMLGHYTDACTEIWRQYHLTT 330
Query: 143 --------------GPLIICRNCGGRGHMAYECPSGRIAD 168
L C +C +GH +ECP + D
Sbjct: 331 KPGPPKKPKTPSRPSALAYCYHCAQKGHYGHECPEREVYD 370
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 69
IC +C K GH +++C + +R C C + GH+ C C+ C + C
Sbjct: 242 ICRNCDKRGHLSKNCPLPRK----VRRCFLCSRRGHLLYSCPA-PLCEYCPVPKMLDHSC 296
Query: 70 ----QNEPVCNLCNIAGHVARQC 88
+ C+ C++ GH C
Sbjct: 297 LFRHSWDKQCDRCHMLGHYTDAC 319
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 146 IICRNCGGRGHMAYECPSGRIADRGY 171
IICRNC RGH++ CP R R +
Sbjct: 241 IICRNCDKRGHLSKNCPLPRKVRRCF 266
>sp|P0C776|GAG_RSVSA Gag-Pro polyprotein OS=Avian leukosis virus RSA GN=gag-pro PE=3
SV=1
Length = 701
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 19 HRARDCSTHVQSGGDLR-LCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNL 77
+R RD T SGG R LC C PGH A C + N R+ C L
Sbjct: 492 NRERDGQT--GSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQL 537
Query: 78 CNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDG 113
C+ GH A+QC + D G G+R G G G
Sbjct: 538 CDGMGHNAKQCRRRD-------GNQGQRPGKGLSSG 566
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 9 GICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
G+C++CG GH C +SG C C GH A C
Sbjct: 507 GLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQC 548
>sp|P04584|POL_HV2RO Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate ROD) GN=gag-pol PE=1 SV=3
Length = 1464
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQ 70
C +CGK GH AR C + G C C KPGHI +C + +A +TG + ++
Sbjct: 391 CWNCGKEGHSARQCRAPRRQG-----CWKCGKPGHIMTNCPDRQA--GFLRTGPLGKEAP 443
Query: 71 NEP 73
P
Sbjct: 444 QLP 446
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 128 CRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYECP 162
C +C + GH +R C P C CG GH+ CP
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCP 426
>sp|A1L2T6|ZCHC7_XENLA Zinc finger CCHC domain-containing protein 7 OS=Xenopus laevis
GN=zcchc7 PE=2 SV=2
Length = 563
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 91 GDSLGERGGGGGGERGGGGGGDGGGG----GGRYVGYHDVICRSCNQMGHMSRDCVGP-- 144
D GERG G RY +V+CR+C++ GH+S++C P
Sbjct: 226 SDDEGERGAAWSISEKDVEAQIGNYTPLRRSNRYYTDKNVVCRNCDKRGHLSKNCPVPKK 285
Query: 145 LIICRNCGGRGHMAYECPS 163
L C CG RGH CPS
Sbjct: 286 LPACCLCGERGHYQNSCPS 304
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 57/174 (32%), Gaps = 64/174 (36%)
Query: 10 ICHSCGKTGHRARDCST--------------HVQSGGDLRLCNNCYKPGHIAADCTNDKA 55
+C +C K GH +++C H Q+ R C NC+ PGH +C
Sbjct: 266 VCRNCDKRGHLSKNCPVPKKLPACCLCGERGHYQNSCPSRYCLNCFLPGHFFKECIERAY 325
Query: 56 CKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCP---KGDSLGERGGGGGGERGGGGGGD 112
RKT C+ C++ GH A CP + L + G + G D
Sbjct: 326 W---RKT------------CHRCSMPGHYADACPEIWRQYHLTIKAGPIKKPKSHSGQKD 370
Query: 113 GGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPSGRI 166
++ C NC +GH YEC R+
Sbjct: 371 --------------------------------IVYCCNCAKKGHCIYECKERRM 392
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 49/147 (33%), Gaps = 49/147 (33%)
Query: 22 RDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC---QNEPVCNLC 78
+D + + LR N Y ++ C+NC K GH++++C + P C LC
Sbjct: 241 KDVEAQIGNYTPLRRSNRYYTDKNVV--------CRNCDKRGHLSKNCPVPKKLPACCLC 292
Query: 79 NIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMS 138
GH CP RY C +C GH
Sbjct: 293 GERGHYQNSCP----------------------------SRY-------CLNCFLPGHFF 317
Query: 139 RDCVGPLI---ICRNCGGRGHMAYECP 162
++C+ C C GH A CP
Sbjct: 318 KECIERAYWRKTCHRCSMPGHYADACP 344
>sp|P19027|GAG_FIVSD Gag polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=gag PE=3 SV=1
Length = 450
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 11 CHSCGKTGHRARDCSTH------VQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGH 64
C G G++ + + VQS G +C NC KPGH+A C + K C C K GH
Sbjct: 345 CQEIGSPGYKMQLLAEALTKVQVVQSKGSGPVCFNCKKPGHLARQCRDVKKCNKCGKPGH 404
Query: 65 IARDC 69
+A C
Sbjct: 405 LAAKC 409
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
+C +C K GH AR C D++ CN C KPGH+AA C
Sbjct: 376 VCFNCKKPGHLARQCR-------DVKKCNKCGKPGHLAAKC 409
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 19 HRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLC 78
+ R C G ++L + + C NC+K GH+AR C++ CN C
Sbjct: 340 EKLRACQEIGSPGYKMQLLAEALTKVQVVQSKGSGPVCFNCKKPGHLARQCRDVKKCNKC 399
Query: 79 NIAGHVARQCPKGDSLGERGGG 100
GH+A +C +G G+R G
Sbjct: 400 GKPGHLAAKCWQG---GKRNSG 418
>sp|P16087|GAG_FIVPE Gag polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=gag PE=3 SV=1
Length = 450
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 11 CHSCGKTGHRARDCSTH------VQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGH 64
C G G++ + + VQS G +C NC KPGH+A C K C C K GH
Sbjct: 345 CQEIGSPGYKMQLLAEALTKVQVVQSKGSGPVCFNCKKPGHLARQCREVKKCNKCGKPGH 404
Query: 65 IARDC 69
+A C
Sbjct: 405 LAAKC 409
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
+C +C K GH AR C +++ CN C KPGH+AA C
Sbjct: 376 VCFNCKKPGHLARQCR-------EVKKCNKCGKPGHLAAKC 409
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 19 HRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLC 78
+ R C G ++L + + C NC+K GH+AR C+ CN C
Sbjct: 340 EKLRACQEIGSPGYKMQLLAEALTKVQVVQSKGSGPVCFNCKKPGHLARQCREVKKCNKC 399
Query: 79 NIAGHVARQCPKGD 92
GH+A +C +G+
Sbjct: 400 GKPGHLAAKCWQGN 413
>sp|P11365|GAG_IPMA Retrovirus-related Gag polyprotein OS=Mouse intracisternal
a-particle MIA14 GN=gag PE=4 SV=2
Length = 827
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 6 HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
+++ C +CGK GH +DC + GG L LC+ C K H A C
Sbjct: 455 NDQRTCFNCGKPGHFKKDCRAPDKQGGTLTLCSKCGKGYHRADQC 499
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 19/85 (22%)
Query: 30 SGGDLRLCNNCYKPGHIAADC-TNDKA------CKNCRKTGHIARDCQNEPVCNLCNIAG 82
S D R C NC KPGH DC DK C C K H A C+ ++ +I G
Sbjct: 453 SRNDQRTCFNCGKPGHFKKDCRAPDKQGGTLTLCSKCGKGYHRADQCR-----SVRDIKG 507
Query: 83 HV-------ARQCPKGDSLGERGGG 100
V + PK S G R G
Sbjct: 508 RVLPPPDSQSAYVPKNGSSGPRSQG 532
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 128 CRSCNQMGHMSRDCVGP------LIICRNCGGRGHMAYECPSGR 165
C +C + GH +DC P L +C CG H A +C S R
Sbjct: 460 CFNCGKPGHFKKDCRAPDKQGGTLTLCSKCGKGYHRADQCRSVR 503
>sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein 3 OS=Homo sapiens
GN=ZCCHC3 PE=1 SV=1
Length = 404
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 32 GDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKG 91
G + C C H++ CT D+ C C + GH++ C+ VCNLC GH QCPK
Sbjct: 331 GQPKTCFKCGSRTHMSGSCTQDR-CFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKA 389
>sp|Q05313|GAG_FIVWO Gag polyprotein OS=Feline immunodeficiency virus (isolate Wo)
GN=gag PE=3 SV=1
Length = 450
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 11 CHSCGKTGHRARDCSTH------VQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGH 64
C G G++ + + VQS G +C NC +PGH+A C + K C C K GH
Sbjct: 345 CQEIGFPGYKMQLLAEALTKVQVVQSKGPGPVCFNCKRPGHLARQCRDVKKCNKCGKPGH 404
Query: 65 IARDC 69
+A C
Sbjct: 405 LAAKC 409
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
+C +C + GH AR C D++ CN C KPGH+AA C
Sbjct: 376 VCFNCKRPGHLARQCR-------DVKKCNKCGKPGHLAAKC 409
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 55 ACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKG 91
C NC++ GH+AR C++ CN C GH+A +C +G
Sbjct: 376 VCFNCKRPGHLARQCRDVKKCNKCGKPGHLAAKCWQG 412
>sp|B1WC15|ZCHC7_RAT Zinc finger CCHC domain-containing protein 7 OS=Rattus norvegicus
GN=Zcchc7 PE=2 SV=1
Length = 542
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 125 DVICRSCNQMGHMSRDCVGPLII--CRNCGGRGHMAYECPS 163
+V CR+C++ GH+S++C P + C C RGH+ Y CP+
Sbjct: 237 NVTCRNCDKRGHLSKNCPLPQKVRPCCLCSERGHLQYGCPA 277
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 47/147 (31%)
Query: 56 CKNCRKTGHIARDC---QNEPVCNLCNIAGHVARQCPK----GDSLGERGGGGGGERGGG 108
C+NC K GH++++C Q C LC+ GH+ CP SL ER
Sbjct: 240 CRNCDKRGHLSKNCPLPQKVRPCCLCSERGHLQYGCPARYCLDCSLPMSSTHRCFERSSW 299
Query: 109 GGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDC------------------------VGP 144
C C+ +GH + C
Sbjct: 300 RKR----------------CDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSA 343
Query: 145 LIICRNCGGRGHMAYECPSGRIADRGY 171
L+ C NC +GH +EC R+ ++ +
Sbjct: 344 LVYCYNCAQKGHYGHECTERRMFNQAF 370
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQ 70
C +C K GH +++C + +R C C + GH+ C + C +C C
Sbjct: 240 CRNCDKRGHLSKNCPLPQK----VRPCCLCSERGHLQYGCPA-RYCLDCSLPMSSTHRCF 294
Query: 71 NEPV----CNLCNIAGHVARQCPK 90
C+ C++ GH A CP+
Sbjct: 295 ERSSWRKRCDRCDMIGHYADACPE 318
>sp|Q9P795|AIR1_SCHPO Protein air1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=air1 PE=1 SV=2
Length = 315
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 10 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNC-YKPGHIAADCTNDKACKNCRKTGHIARD 68
+CH+C GH ++DC HV LC C HI+ C K C NC GHIA
Sbjct: 90 VCHNCKGNGHISKDC-PHV-------LCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAAR 141
Query: 69 CQNEP------VCNLCNIAGHVARQCP 89
C +EP VC C+ H + CP
Sbjct: 142 C-SEPRKRGPRVCRTCHTDTHTSSTCP 167
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 71 NEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGY---HDVI 127
++ + N ++ H + DS + + G D G RY G ++
Sbjct: 33 DQSITNSVSLEKHDFQGSDDHDSSTDLSDSTLEDVEGSEWADVSRG--RYFGSDPSESIV 90
Query: 128 CRSCNQMGHMSRDCVGPLIICRNCGG-RGHMAYECPSGR 165
C +C GH+S+DC P ++C CG H++ CP +
Sbjct: 91 CHNCKGNGHISKDC--PHVLCTTCGAIDDHISVRCPWTK 127
>sp|P69732|GAG_EIAVY Gag polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=gag PE=1 SV=1
Length = 486
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 31 GGDLRLCNNCY---KPGHIAADCTNDKACKNCRKTGHIARDCQNEP 73
GG L+ CY KPGH+++ C K C C++ GH ++ C++ P
Sbjct: 374 GGPLKAAQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVP 419
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 54 KACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGER 105
+ C NC K GH++ C+ VC C GH ++QC G++G G ++
Sbjct: 381 QTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVPKNGKQGAQGRPQK 432
>sp|P69731|GAG_EIAVC Gag polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=gag PE=3 SV=1
Length = 486
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 31 GGDLRLCNNCY---KPGHIAADCTNDKACKNCRKTGHIARDCQNEP 73
GG L+ CY KPGH+++ C K C C++ GH ++ C++ P
Sbjct: 374 GGPLKAAQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVP 419
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 54 KACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGER 105
+ C NC K GH++ C+ VC C GH ++QC G++G G ++
Sbjct: 381 QTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVPKNGKQGAQGRPQK 432
>sp|P69730|GAG_EIAV9 Gag polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=gag PE=1 SV=1
Length = 486
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 31 GGDLRLCNNCY---KPGHIAADCTNDKACKNCRKTGHIARDCQNEP 73
GG L+ CY KPGH+++ C K C C++ GH ++ C++ P
Sbjct: 374 GGPLKAAQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVP 419
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 54 KACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGER 105
+ C NC K GH++ C+ VC C GH ++QC G++G G ++
Sbjct: 381 QTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVPKNGKQGAQGRPQK 432
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1
PE=1 SV=3
Length = 763
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 37 CNNCYKPGHIAADCTNDK------ACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPK 90
C NC +PGH ++DC + C NC++ GH +R+C E R+ +
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE-------------RKPRE 206
Query: 91 GDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLIICRN 150
G + G GG G G GG G G GG G + C +C GH S +C P C N
Sbjct: 207 GRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFN 266
Query: 151 CGGRGHMAYECP 162
CG +GH + ECP
Sbjct: 267 CGEQGHRSNECP 278
>sp|Q2KIN0|ZCHC7_BOVIN Zinc finger CCHC domain-containing protein 7 OS=Bos taurus
GN=ZCCHC7 PE=2 SV=2
Length = 546
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 107 GGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLII--CRNCGGRGHMAYECPS 163
G G Y +V CR+C++ GH+S++C P + C C RGH+ Y CP+
Sbjct: 222 GNKRSSGRWTHRYYTANKNVTCRNCDKCGHLSKNCPFPQKVRPCCLCSERGHLQYACPA 280
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans GN=glh-2
PE=1 SV=1
Length = 974
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 37 CNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGE 96
C NC +PGH + DC K + R VC C GH +R CP+ E
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPR-------------VCYNCQQPGHNSRDCPEERKPRE 419
Query: 97 -RGGGGGGERGGGGGGDGGGGGGRYVGYHD---VICRSCNQMGHMSRDCVGPLIICRNCG 152
R G G GG GG GGG + + + C +C GH S +C P C NCG
Sbjct: 420 GRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCG 479
Query: 153 GRGHMAYECPS 163
+GH + ECP+
Sbjct: 480 EQGHRSNECPN 490
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 128 CRSCNQMGHMSRDCVGPLI-----ICRNCGGRGHMAYECPSGR 165
C +C Q GH S DC P +C NC GH + +CP R
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 128 CRSCNQMGHMSRDCVGPLI-----ICRNCGGRGHMAYECPSGR 165
C +C Q GH S DC P +C NC GH + +CP R
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
>sp|Q02843|GAG_SIVG1 Gag polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag PE=1 SV=1
Length = 513
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 128 CRSCNQMGHMSRDCVGP-LIICRNCGGRGHMAYECPSGRIADRGY 171
C +C + GHM R+C P I C CG GHMA +C +G+ GY
Sbjct: 392 CFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQANFLGY 436
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA 55
C +CGK GH R+C Q C C K GH+A DC N +A
Sbjct: 392 CFNCGKFGHMQRECKAPRQIK-----CFKCGKIGHMAKDCKNGQA 431
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 37 CNNCYKPGHIAADCTNDKACK--NCRKTGHIARDCQN 71
C NC K GH+ +C + K C K GH+A+DC+N
Sbjct: 392 CFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKN 428
>sp|B1AX39|ZCHC7_MOUSE Zinc finger CCHC domain-containing protein 7 OS=Mus musculus
GN=Zcchc7 PE=2 SV=1
Length = 541
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 113 GGGGGGRYVGYH-DVICRSCNQMGHMSRDCVGPLII--CRNCGGRGHMAYECPS 163
G RY + +V CR+C++ GH+S++C P + C C RGH+ Y CP+
Sbjct: 222 SGRWNNRYYSVNKNVTCRNCDKRGHLSKNCPLPQKVRACCLCSERGHLQYGCPA 275
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 63/197 (31%), Gaps = 73/197 (37%)
Query: 11 CHSCGKTGHRARDC-----STHVQSGGDLRLCNNCYKPGHIAADCTNDKA---------- 55
C+ CG GH ARDC GG R C +C + GH+A DC
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 56 ------CKNCRKTGHIARDCQNE---------PVCNLCNIAGHVARQC----PKGDSLGE 96
C C GH ARDC+ C C GH+A+ C P G G
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGG 251
Query: 97 RGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDC----------VGPLI 146
R C C GH++RDC G
Sbjct: 252 RA-----------------------------CYECGGTGHLARDCDRRGSGSSGGGGGSN 282
Query: 147 ICRNCGGRGHMAYECPS 163
C CG GH A EC S
Sbjct: 283 KCFICGKEGHFARECTS 299
>sp|Q82850|GAG_JEMBR Gag polyprotein OS=Jembrana disease virus GN=gag PE=3 SV=1
Length = 436
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 24 CSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNE 72
+ +V+ G+++ C C KPGHI DC N K C C K GH+ R+C+++
Sbjct: 357 AAINVKGDGEVQRCYGCGKPGHIRRDCKNQK-CFKCGKPGHLQRNCKSK 404
>sp|P40507|AIR1_YEAST Protein AIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR1 PE=1 SV=1
Length = 360
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 50/139 (35%), Gaps = 26/139 (18%)
Query: 8 EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNC-YKPGHIAADCTNDKACKNCRKTGHIA 66
E C++C + GH R+C HV +C C + H + C C NC GH
Sbjct: 73 EPKCNNCSQRGHLKRNCP-HV-------ICTYCGFMDDHYSQHCPKAIICTNCNANGHYK 124
Query: 67 RDC---QNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGY 123
C + C LCN H +CP S+ R + G D +
Sbjct: 125 SQCPHKWKKVFCTLCNSKRHSRERCP---SIW-RSYLLKTKDANQGDFD----------F 170
Query: 124 HDVICRSCNQMGHMSRDCV 142
V C +C GH DC
Sbjct: 171 QTVFCYNCGNAGHFGDDCA 189
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 37/92 (40%)
Query: 72 EPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSC 131
EP CN C+ GH+ R CP VIC C
Sbjct: 73 EPKCNNCSQRGHLKRNCPH-----------------------------------VICTYC 97
Query: 132 NQMG-HMSRDCVGPLIICRNCGGRGHMAYECP 162
M H S+ C IIC NC GH +CP
Sbjct: 98 GFMDDHYSQHCPK-AIICTNCNANGHYKSQCP 128
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 38/114 (33%)
Query: 53 DKACKNCRKTGHIARDCQNEPVCNLC-NIAGHVARQCPKGDSLGERGGGGGGERGGGGGG 111
+ C NC + GH+ R+C + +C C + H ++ CPK
Sbjct: 73 EPKCNNCSQRGHLKRNCPHV-ICTYCGFMDDHYSQHCPKA-------------------- 111
Query: 112 DGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPL--IICRNCGGRGHMAYECPS 163
+IC +CN GH C + C C + H CPS
Sbjct: 112 --------------IICTNCNANGHYKSQCPHKWKKVFCTLCNSKRHSRERCPS 151
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 128 CRSCNQMGHMSRDCVGPL-----IICRNCGGRGHMAYECP 162
C++C Q+GH DC IICR CG GHMA +CP
Sbjct: 321 CQNCGQIGHRKYDCPEKQNYTANIICRVCGNAGHMARDCP 360
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 53 DKACKNCRKTGHIARDCQNEP------VCNLCNIAGHVARQCP---KGDSLGERGGGGG- 102
++AC+NC + GH DC + +C +C AGH+AR CP +G S G G G
Sbjct: 318 NQACQNCGQIGHRKYDCPEKQNYTANIICRVCGNAGHMARDCPDRQRGASWRNDGPGAGR 377
Query: 103 --GERGGGGGGDG 113
G G GGGD
Sbjct: 378 TAGRIGSSGGGDA 390
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTG 63
C +CG+ GHR DC ++ +C C GH+A DC + + + R G
Sbjct: 321 CQNCGQIGHRKYDCPEKQNYTANI-ICRVCGNAGHMARDCPDRQRGASWRNDG 372
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana
GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 9 GICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYK---PGHIAADCTNDKACKNCRKTGHI 65
G C +CG GH ARDC + GD + N CY+ GHI +C N + K R+ G
Sbjct: 99 GRCFNCGVDGHWARDC-----TAGDWK--NKCYRCGERGHIERNCKNSPSPKKARQGGSY 151
Query: 66 AR 67
+R
Sbjct: 152 SR 153
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 128 CRSCNQMGHMSRDC-----VGPLIICRNCGGRGHMAYECP 162
C++C Q+GH DC IICR CG GHMA +CP
Sbjct: 306 CQNCGQIGHRKYDCPEQRNFTANIICRVCGNAGHMARDCP 345
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 53 DKACKNCRKTGHIARDCQNE------PVCNLCNIAGHVARQCP 89
++AC+NC + GH DC + +C +C AGH+AR CP
Sbjct: 303 NQACQNCGQIGHRKYDCPEQRNFTANIICRVCGNAGHMARDCP 345
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTN 52
C +CG+ GHR DC ++ +C C GH+A DC +
Sbjct: 306 CQNCGQIGHRKYDCPEQRNFTANI-ICRVCGNAGHMARDCPD 346
>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR2 PE=1 SV=1
Length = 344
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 37 CNNCYKPGHIAADCTNDKACKNCRKTG-HIARDCQNEPVCNLCNIAGHVARQCPKGDSLG 95
CNNC + GH+ DC + C C T H +R C C+ C+ GH QCP
Sbjct: 63 CNNCSQRGHLKKDCPH-IICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKWKKV 121
Query: 96 E----RGGGGGGERGGGGG------GDGGGGGGRYVGYHDVICRSCNQMGHMSRDC 141
+ + ER D + + +H + C +C GH DC
Sbjct: 122 QCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDC 177
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 116 GGGRYVGYHD----------VICRSCNQMGHMSRDCVGPLIICRNCGGR-GHMAYECPSG 164
G GRY G D C +C+Q GH+ +DC P IIC CG H + CP
Sbjct: 41 GQGRYFGVSDDDKDAIKEAAPKCNNCSQRGHLKKDC--PHIICSYCGATDDHYSRHCPKA 98
>sp|P27972|GAG_SIVV1 Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag PE=3 SV=1
Length = 520
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 128 CRSCNQMGHMSRDCVGP-LIICRNCGGRGHMAYECPSGRIADRGYRRY 174
C +C + GHM R C P I C CG GH+A +C G++ GY R+
Sbjct: 400 CYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDC-RGQVNFLGYGRW 446
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 50
C++CGK GH R C + C C KPGH+A DC
Sbjct: 400 CYNCGKFGHMQRQCPEPRKIK-----CLKCGKPGHLAKDC 434
>sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis encephalitis virus (strain
Cork) GN=gag PE=3 SV=1
Length = 441
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 11 CHSCGKTGHRARDCSTHVQSG-----GDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHI 65
C G G + + + ++ G G + C NC KPGH A C C NC K GH+
Sbjct: 350 CRDVGSEGFKMQLLAQALRPGKGKGNGQPQRCYNCGKPGHQARQCRQGIICHNCGKRGHM 409
Query: 66 ARDC 69
++C
Sbjct: 410 QKEC 413
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 128 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 161
C +C + GH +R C IIC NCG RGHM EC
Sbjct: 381 CYNCGKPGHQARQCRQG-IICHNCGKRGHMQKEC 413
>sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2)
GN=gag PE=3 SV=1
Length = 442
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 37 CNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNE 72
C NC KPGH+A C C +C K GH+ +DC+ +
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQK 422
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 11 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRK 61
C++CGK GH AR C + +C++C K GH+ DC K N R+
Sbjct: 387 CYNCGKPGHLARQCRQGI-------ICHHCGKRGHMQKDCRQKKQQGNNRR 430
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 1 MASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLR 35
+A C ICH CGK GH +DC Q G + R
Sbjct: 396 LARQCRQGIICHHCGKRGHMQKDCRQKKQQGNNRR 430
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 128 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 161
C +C + GH++R C IIC +CG RGHM +C
Sbjct: 387 CYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDC 419
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.143 0.501
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,599,053
Number of Sequences: 539616
Number of extensions: 4262938
Number of successful extensions: 104392
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 546
Number of HSP's that attempted gapping in prelim test: 38229
Number of HSP's gapped (non-prelim): 35230
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)