BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030605
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX22|RRP31_ARATH 30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana
GN=At1g68590 PE=1 SV=1
Length = 166
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/175 (62%), Positives = 128/175 (73%), Gaps = 11/175 (6%)
Query: 1 MLSSMALQST-VNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESL 59
M+SSMAL ST + +F S P +T P + H TKPIS ++++ LA PE+L
Sbjct: 1 MMSSMALSSTSLCSSFI--SQHPKLSITASPP---LFHTQTTKPISVKRKIITLAAPETL 55
Query: 60 TAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTI 119
TAE T T +T TP +T K VK EK R+VLKF+WMEKNIGL LDQ +PG+GTI
Sbjct: 56 TAE--TVTGIDTSDNTPQQTIKV---VKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTI 110
Query: 120 PLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 174
PLS YFFWPRKDAWEELK+TLE+KPWISQK MIILLNQATDIINLWQQSGGNLT+
Sbjct: 111 PLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLTS 165
>sp|P82412|RRP3_SPIOL 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea
GN=PSRP3 PE=1 SV=1
Length = 179
Score = 179 bits (455), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 117/178 (65%), Gaps = 8/178 (4%)
Query: 4 SMALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNR---TKP----ISRNQRLVALATP 56
SMA+Q +N A S + S KL++KP KT + + P + + P
Sbjct: 3 SMAVQPNIN-AIAKPSIYQSPKLSLKPFKTPAFANPKPFFSSPSFSQLKKKNNWSLFVAP 61
Query: 57 ESLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGY 116
E+++ + V +K V VK ++KPRLVLKFIWMEKNIGLALDQ+IPG+
Sbjct: 62 ETISDVAIMGNEVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGH 121
Query: 117 GTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 174
GT+PLS Y+FWPRKDAWEELK LE+KPWISQK MIILLNQATDIINLWQQSGGNL +
Sbjct: 122 GTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIINLWQQSGGNLAS 179
>sp|Q9LFV0|RRP32_ARATH 30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana
GN=At5g15760 PE=2 SV=1
Length = 183
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/184 (50%), Positives = 119/184 (64%), Gaps = 16/184 (8%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISR--------NQRLV----A 52
MA+Q+ + +F R++ PSQKL+ KP L + KP SR NQ + +
Sbjct: 1 MAVQANQSASFGFRTASPSQKLSSKPIAHISL-STKLKPSSRPSLSCSTWNQGQIPARHS 59
Query: 53 LATPESLTAEEATTTSTETIPAT---PVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLAL 109
P + T + +P + P+ KK V VK LEKP++VLKF+WM+K+IG+AL
Sbjct: 60 CINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVAL 119
Query: 110 DQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 169
D IPG+GTIPLS Y+FWPRKDAWEELKT LESKPWIS+ + LLNQATDIINLWQ SG
Sbjct: 120 DHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSG 179
Query: 170 GNLT 173
G+L+
Sbjct: 180 GDLS 183
>sp|O48609|RRP3_HORVU 30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3
PE=2 SV=1
Length = 181
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/98 (71%), Positives = 82/98 (83%)
Query: 77 VETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEEL 136
VE+++ V V + + P LVLKFIWMEKNIG+ALDQ +PG G+IPLS Y+FWPRKDAWEEL
Sbjct: 84 VESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEEL 143
Query: 137 KTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 174
+ LE K WISQK MIILLNQATDIINLWQQ GG+L+T
Sbjct: 144 RAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLST 181
>sp|P59327|RRP3_THEEB Probable 30S ribosomal protein PSRP-3 OS=Thermosynechococcus
elongatus (strain BP-1) GN=tlr0301 PE=3 SV=1
Length = 108
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Query: 84 VSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESK 143
+S ++LE R L+ +W+EK++ +A+DQ I G GT PL+ YFFWPR DAWE LK LE K
Sbjct: 3 ISFRRLELSRFTLRVLWLEKDVAIAVDQ-IVGKGTSPLTSYFFWPRTDAWELLKAELEKK 61
Query: 144 PWISQKMMIILLNQATDIINLWQQSGGN 171
WI++ I LLN+AT+IIN WQ+ G N
Sbjct: 62 SWITEAERIELLNRATEIINYWQEEGKN 89
>sp|B8HTT7|RRP3_CYAP4 Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain PCC
7425 / ATCC 29141) GN=Cyan7425_0465 PE=3 SV=1
Length = 109
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
+ +LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE+LKT LE K WIS+ I
Sbjct: 13 QFILKVLWLDSNVALAVDQVV-GKGTSPLTSYFFWPRADAWEQLKTELEKKTWISEADRI 71
Query: 153 ILLNQATDIINLWQQSGGN 171
LLN+ATDIIN WQ+ G N
Sbjct: 72 ALLNRATDIINYWQEEGRN 90
>sp|P51351|RRP3_PORPU Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra
purpurea GN=ycf65 PE=3 SV=1
Length = 99
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
+ LK +W+E NI +A+DQ I G GT PL+ YFFWPR DAWEELK LESKPWI+++ I
Sbjct: 3 KFTLKVLWLENNIAIAIDQ-IVGNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 61
Query: 153 ILLNQATDIINLWQQSG 169
LLN+ T++IN WQ+ G
Sbjct: 62 ELLNKTTEVINYWQEEG 78
>sp|Q1XDD6|RRP3_PORYE Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra
yezoensis GN=ycf65 PE=3 SV=1
Length = 102
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 62/86 (72%), Gaps = 3/86 (3%)
Query: 84 VSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESK 143
+ +K L K LK +W+E NI +A+DQ I G GT PL+ YFFWPR DAWEELK LESK
Sbjct: 1 MEIKNLSK--FTLKVLWLENNIAIAIDQ-IVGNGTSPLTSYFFWPRNDAWEELKAELESK 57
Query: 144 PWISQKMMIILLNQATDIINLWQQSG 169
PWI+++ I LLN+ T++IN WQ+ G
Sbjct: 58 PWIAERDRIELLNKTTEVINYWQEEG 83
>sp|Q9MUN2|RRP3_MESVI Probable 30S ribosomal protein 3, chloroplastic OS=Mesostigma
viride GN=ycf65 PE=3 SV=1
Length = 123
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
+ VLKF+W+EKN+ + +DQ + G P+++YFFWPRKDAWEELK L +KPWIS I
Sbjct: 20 KFVLKFLWLEKNLAVTVDQ-VTNRGNSPITEYFFWPRKDAWEELKDALANKPWISYDESI 78
Query: 153 ILLNQATDIINLWQQS 168
LLNQ TD+IN WQ+
Sbjct: 79 ALLNQTTDVINYWQED 94
>sp|Q8YSC1|RRP3_NOSS1 Probable 30S ribosomal protein PSRP-3 OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=asr3168 PE=3 SV=2
Length = 99
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WIS +
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRV 61
Query: 153 ILLNQATDIINLWQQSGGN 171
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>sp|Q3M6B5|RRP3_ANAVT Probable 30S ribosomal protein PSRP-3 OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=Ava_3866 PE=3 SV=1
Length = 99
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WIS +
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRV 61
Query: 153 ILLNQATDIINLWQQSGGN 171
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>sp|B2IUK8|RRP3_NOSP7 Probable 30S ribosomal protein PSRP-3 OS=Nostoc punctiforme (strain
ATCC 29133 / PCC 73102) GN=Npun_F4413 PE=3 SV=1
Length = 99
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
+ +LK +W+++N+ LA+DQ I G GT PL++YFFWPR DAWEELK LESK WI+ +
Sbjct: 3 KFILKILWLDENVALAVDQ-IVGKGTSPLTKYFFWPRNDAWEELKKELESKHWITDLDRV 61
Query: 153 ILLNQATDIINLWQQSGGN 171
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>sp|Q7VA74|RRP3_PROMA Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=Pro_1593 PE=3 SV=1
Length = 126
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 90 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 149
++ R +LK +W+ N+ LA+DQ I G GT PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 27 DEGRFLLKILWLPDNVALAVDQ-IVGGGTSPLTAYFFWPREDAWETLKTELEDKAWITDN 85
Query: 150 MMIILLNQATDIINLWQQSG 169
+ +LN+AT++IN WQ+ G
Sbjct: 86 ERVEVLNKATEVINYWQEEG 105
>sp|O78422|RRP3_GUITH Probable 30S ribosomal protein 3, chloroplastic OS=Guillardia theta
GN=ycf65 PE=3 SV=1
Length = 99
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 92 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 151
P+ LK +W++ N+ +A+DQ I G GT PL+ YFFWPR DAWE++K LESKPWI +K
Sbjct: 2 PKFTLKVLWLDNNVAVAVDQII-GNGTSPLTCYFFWPRNDAWEQVKAELESKPWIEEKER 60
Query: 152 IILLNQATDIINLWQQ 167
I LLN+ T++IN WQ+
Sbjct: 61 IELLNKTTELINCWQE 76
>sp|Q5N172|RRP3_SYNP6 Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1758_d PE=3
SV=1
Length = 112
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
R +K +W+ +N+ +A+DQ + G T PL+ Y+FWPR DAWE+LKT LESK WI++ +
Sbjct: 16 RFTIKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERV 74
Query: 153 ILLNQATDIINLWQQSG 169
LLNQAT++IN WQ+ G
Sbjct: 75 ELLNQATEVINYWQEEG 91
>sp|O05161|RRP3_SYNE7 Probable 30S ribosomal protein PSRP-3 OS=Synechococcus elongatus
(strain PCC 7942) GN=mut3G PE=3 SV=1
Length = 112
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
R +K +W+ +N+ +A+DQ + G T PL+ Y+FWPR DAWE+LKT LESK WI++ +
Sbjct: 16 RFTIKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERV 74
Query: 153 ILLNQATDIINLWQQSG 169
LLNQAT++IN WQ+ G
Sbjct: 75 ELLNQATEVINYWQEEG 91
>sp|Q10YY1|RRP3_TRIEI Probable 30S ribosomal protein PSRP-3 OS=Trichodesmium erythraeum
(strain IMS101) GN=Tery_3451 PE=3 SV=1
Length = 99
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
+ +LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE+LK LE K WIS+ +
Sbjct: 3 KFILKVVWLDDNVALAVDQVV-GNGTSPLTCYFFWPRNDAWEQLKKELEGKHWISEADRV 61
Query: 153 ILLNQATDIINLWQQSG 169
LLN+AT+II+ WQ+ G
Sbjct: 62 ALLNKATEIISYWQEEG 78
>sp|B0CBD5|RRP3_ACAM1 Probable 30S ribosomal protein PSRP-3 OS=Acaryochloris marina
(strain MBIC 11017) GN=AM1_2922 PE=3 SV=1
Length = 99
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
+ +LK +W+++N+ LA+DQ + G G+ PL+ YFFWPR DAWE LKT LE K WI + I
Sbjct: 3 KFILKVLWLDENVALAVDQVV-GNGSSPLTSYFFWPRNDAWENLKTELEKKTWIDEVERI 61
Query: 153 ILLNQATDIINLWQQSG 169
+LN+AT++IN WQ+ G
Sbjct: 62 SILNKATEVINYWQEEG 78
>sp|B1WYT6|RRP3_CYAA5 Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain
ATCC 51142) GN=cce_1753 PE=3 SV=1
Length = 112
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 62/86 (72%), Gaps = 4/86 (4%)
Query: 84 VSVKQLE---KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTL 140
+S QLE +PR +LK +W++ N+ +A+DQ + G GT PL+ YFFWPR DAW+ELK L
Sbjct: 1 MSFIQLEGQLEPRFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQELKDEL 59
Query: 141 ESKPWISQKMMIILLNQATDIINLWQ 166
E+K WI + I +LN+AT++IN WQ
Sbjct: 60 EAKHWILETERIEILNKATEVINYWQ 85
>sp|Q9BAC5|RRP3_EUGGA Probable 30S ribosomal protein 3, chloroplastic OS=Euglena
granulata GN=ycf65 PE=3 SV=1
Length = 103
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 91 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 150
K L+LKF+W+EK+I + LDQ + G PL+++FFWP+KDAWEE+K LES+ WI+Q
Sbjct: 2 KKELILKFLWLEKSIAVCLDQKV-GDSITPLTEFFFWPQKDAWEEMKNFLESQSWITQSD 60
Query: 151 MIILLNQATDIINLWQQSGGNL 172
+ LLN T++IN WQ+ N+
Sbjct: 61 SVNLLNNITEVINFWQERDTNV 82
>sp|Q55385|RRP3_SYNY3 Probable 30S ribosomal protein PSRP-3 OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=slr0923 PE=1 SV=1
Length = 112
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 94 LVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMII 153
+LK +W+++N+ +A+DQ I G GT PL+ YFFWPR DAW++LK LE+K WI++ I
Sbjct: 14 FILKVLWLDQNVAIAVDQ-IVGKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRIN 72
Query: 154 LLNQATDIINLWQ 166
+LNQAT++IN WQ
Sbjct: 73 VLNQATEVINFWQ 85
>sp|Q9BAC0|RRP3_EUGST Probable 30S ribosomal protein 3, chloroplastic OS=Euglena stellata
GN=ycf65 PE=3 SV=1
Length = 101
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 94 LVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMII 153
+LKF+W+EK++ + LDQ I G T P++++FFWP+ DAWEE+K LE K WI Q ++I
Sbjct: 4 FILKFLWLEKSVAVGLDQKI-GDRTTPVTEFFFWPQHDAWEEMKNFLEDKSWIDQSEVVI 62
Query: 154 LLNQATDIINLWQQ 167
LLNQ T++IN WQ+
Sbjct: 63 LLNQITEVINYWQE 76
>sp|Q6B913|RRP3_GRATL Probable 30S ribosomal protein 3, chloroplastic OS=Gracilaria
tenuistipitata var. liui GN=ycf65 PE=3 SV=1
Length = 99
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
+ K +W+E NI +A+D +I G PL+ YFFWPR DAWEELK LESKPWI++ +
Sbjct: 3 KFTFKILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELKIELESKPWINKNEKV 61
Query: 153 ILLNQATDIINLWQQSGGN 171
LLN+ T+IIN WQ+ N
Sbjct: 62 DLLNKTTEIINFWQEKEKN 80
>sp|Q2JXD5|RRP3_SYNJA Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain
JA-3-3Ab) GN=CYA_0331 PE=3 SV=1
Length = 99
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 92 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 151
P+ LK +W+E ++ +A+DQ + + PL++YFFWPR DAWE+LK LESK WIS++
Sbjct: 2 PKFALKALWLENDLAIAVDQVVAKNRS-PLTRYFFWPRDDAWEQLKAELESKTWISEEDR 60
Query: 152 IILLNQATDIINLWQQSG 169
I LLNQAT++IN WQ G
Sbjct: 61 ITLLNQATELINYWQNGG 78
>sp|Q7V048|RRP3_PROMP Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=PMM1440 PE=3
SV=2
Length = 126
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 90 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 149
++ R ++K +W+ N+ LA+DQ I G G+ PL+ Y+FWPR DAWE+LK+ LE+K WI+
Sbjct: 27 DEGRFIIKILWLPDNVALAVDQ-IVGGGSSPLTAYYFWPRDDAWEKLKSELENKSWITDN 85
Query: 150 MMIILLNQATDIINLWQQSG 169
+ +LN+AT++IN WQ+ G
Sbjct: 86 ERVEILNKATEVINYWQEEG 105
>sp|Q7V5U0|RRP3_PROMM Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus
(strain MIT 9313) GN=PMT_1454 PE=3 SV=2
Length = 126
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 88 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 147
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK LE K WI+
Sbjct: 25 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKGELEGKSWIT 83
Query: 148 QKMMIILLNQATDIINLWQQSG 169
+ +LN+AT++IN WQ+ G
Sbjct: 84 DNERVEVLNKATEVINYWQEEG 105
>sp|Q2JKV8|RRP3_SYNJB Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=CYB_1711 PE=3 SV=1
Length = 99
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 92 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 151
P+ LK +W+E ++ +A+DQ + + PL+ YFFWPR DAWE+LK LESK WIS+
Sbjct: 2 PKFALKALWLENDLAIAVDQVVAKNRS-PLTHYFFWPRDDAWEQLKAELESKTWISEVDR 60
Query: 152 IILLNQATDIINLWQQSGGN 171
I LLN+AT++IN WQ G N
Sbjct: 61 IELLNRATELINYWQNGGRN 80
>sp|Q9BAB9|RRP3_EUGVI Probable 30S ribosomal protein 3, chloroplastic OS=Euglena viridis
GN=ycf65 PE=3 SV=1
Length = 101
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
+ VLKF+W+++++ ++LDQ I G PL++++FWP+ DAWEE++ LESK WI+ I
Sbjct: 3 KFVLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMRNFLESKSWINSSESI 61
Query: 153 ILLNQATDIINLWQQSGG 170
+LLNQ T+IIN WQ+
Sbjct: 62 LLLNQVTEIINDWQEKDD 79
>sp|Q9BAC3|RRP3_EUGMU Probable 30S ribosomal protein 3, chloroplastic OS=Euglena
mutabilis GN=ycf65 PE=3 SV=1
Length = 101
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
R VLKF+ ++K I + LDQ I PL++YFFWP++DAWE++K +++ WI K +
Sbjct: 3 RFVLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMKNFIDNNDWIDPKDAV 62
Query: 153 ILLNQATDIINLWQQSG 169
+LN+ T++IN W++S
Sbjct: 63 NILNRITEVINFWEESA 79
>sp|Q9TLZ0|RRP3_CYACA Probable 30S ribosomal protein 3, chloroplastic OS=Cyanidium
caldarium GN=ycf65 PE=3 SV=3
Length = 101
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 96 LKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILL 155
+K +W+ NI +A+D+ I G P++ Y+FWPR DAWE+LK L+S+P + K +++L
Sbjct: 6 IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVIL 64
Query: 156 NQATDIINLWQQS 168
NQ T II+ WQ++
Sbjct: 65 NQVTRIIDYWQEN 77
>sp|Q9BAC2|RRP3_EUGMY Probable 30S ribosomal protein 3, chloroplastic OS=Euglena
myxocylindracea GN=ycf65 PE=3 SV=1
Length = 101
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 97 KFIW----MEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 152
KF+W +E I + LDQ + T P+++YFFWP+ DAW+EL LESKPWI+ I
Sbjct: 3 KFVWKVVCLENKIAICLDQQLAD-KTSPVTEYFFWPQSDAWDELNKLLESKPWITLSNRI 61
Query: 153 ILLNQATDIINLWQQSGG 170
+LN TD+IN W +
Sbjct: 62 FVLNILTDLINYWDEKKS 79
>sp|P96851|HSAD_MYCTU 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),
2-diene-4-oate hydrolase OS=Mycobacterium tuberculosis
GN=hsaD PE=1 SV=1
Length = 291
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 25 KLTVKPTK--------TTILHQNRTKPISRNQRLVALATPESLTAEEATTTSTETIPATP 76
K +V PT+ + +N P +QR +TPESLTA A S
Sbjct: 160 KFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKS---FAGAD 216
Query: 77 VETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEEL 136
E V +L +P L+ IW ++ LD ++ TIP +Q + + W ++
Sbjct: 217 FEAGMMWREVYRLRQPVLL---IWGREDRVNPLDGALVALKTIPRAQLHVFGQCGHWVQV 273
Query: 137 K 137
+
Sbjct: 274 E 274
>sp|Q39VA6|IF2_GEOMG Translation initiation factor IF-2 OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=infB PE=3 SV=1
Length = 884
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 24 QKLTVKPTK------------TTILHQNRTKPISRNQRLVALATPESLTAEEATTTSTET 71
QK+T PT TT + + R K +++ VA A ES EEA E
Sbjct: 44 QKVTAPPTPPKGVQQQEEVRVTTTVIRRRPKAVAQPPEEVAPAAVESAVIEEAPAPRVEA 103
Query: 72 IPATPVETKKAGVSVKQLEKPRLV 95
+P P + +V +E+P+ V
Sbjct: 104 VPEEPKASPAFAETVPAVEEPKGV 127
>sp|B7IH68|SURE_THEAB 5'-nucleotidase SurE OS=Thermosipho africanus (strain TCF52B)
GN=surE PE=3 SV=1
Length = 255
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 71 TIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGL----------ALDQSIPGYGTIP 120
++ TP + K G+ V EKP L++ I N+G AL+ +I G +I
Sbjct: 66 SVSGTPADCVKMGIDVVLGEKPDLLISGINRGNNLGTDVVYSGTVSGALEGAIAGVPSIA 125
Query: 121 LSQYFF 126
+S Y F
Sbjct: 126 VSSYSF 131
>sp|O35181|NRG3_MOUSE Pro-neuregulin-3, membrane-bound isoform OS=Mus musculus GN=Nrg3
PE=1 SV=1
Length = 713
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 6 ALQSTVNGAFTTRSSFP---SQKLTVKPTK-------TTILHQN--RTKPISRNQRLVAL 53
AL+ + +F+ SFP S +P K + +LH+N R P S RL +
Sbjct: 439 ALEKIMESSFSAPQSFPEVTSPDRGSQPIKHHSPGQRSGMLHRNTFRRAPPSPRSRLGGI 498
Query: 54 ATPESLTAEEATTTSTETIPATPVETKK 81
P EE+ +TIP +E +K
Sbjct: 499 VGPAYQQLEESRIPDQDTIPCQGIEVRK 526
>sp|Q8IYW2|TTC40_HUMAN Tetratricopeptide repeat protein 40 OS=Homo sapiens GN=TTC40 PE=2
SV=3
Length = 2715
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 56 PESLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
PE + + E P +PV + VS++QL R + + + L L G
Sbjct: 1259 PEPQPTPDGEYVAVEMPPRSPVSEAEEAVSLEQLRSVRQLEALARVHILLALVLSPGAEG 1318
Query: 116 YGTIPLSQYFFWPRKDAWE-----ELKTTLESKPWISQKMMIIL 154
Y L+ Y F+ + W+ K+ LE++P + ++L
Sbjct: 1319 YEDCCLAAYAFF--RHIWQVSLMTAGKSVLENRPLAATSSHLLL 1360
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,185,689
Number of Sequences: 539616
Number of extensions: 2104536
Number of successful extensions: 5963
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 5688
Number of HSP's gapped (non-prelim): 264
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)