Query 030605
Match_columns 174
No_of_seqs 73 out of 75
Neff 2.6
Searched_HMMs 29240
Date Tue Mar 26 02:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt9_A Probable 30S ribosomal 100.0 1.1E-48 3.7E-53 302.6 8.8 77 90-167 6-82 (116)
2 1mdy_A Protein (MYOD BHLH doma 32.8 36 0.0012 23.1 3.0 37 130-167 28-64 (68)
3 2ql2_B Neurod1, neurogenic dif 30.5 51 0.0017 21.8 3.4 38 130-167 18-55 (60)
4 1wzd_A Heme oxygenase; electro 25.7 81 0.0028 24.4 4.3 42 122-164 158-203 (215)
5 3bbo_W Ribosomal protein L24; 22.5 18 0.00062 29.7 0.0 26 2-27 1-26 (191)
6 1nlw_A MAD protein, MAX dimeri 22.0 62 0.0021 22.4 2.7 39 131-169 18-56 (80)
7 1nkp_A C-MYC, MYC proto-oncoge 20.8 68 0.0023 22.5 2.7 38 131-168 23-60 (88)
8 2lfh_A DNA-binding protein inh 19.8 92 0.0031 21.7 3.1 38 130-167 30-67 (68)
9 3u5v_A Protein MAX, transcript 17.1 1.1E+02 0.0037 21.1 3.0 38 130-168 21-60 (76)
10 2dh2_A 4F2 cell-surface antige 16.8 1.1E+02 0.0037 25.9 3.6 42 103-169 94-135 (424)
No 1
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=100.00 E-value=1.1e-48 Score=302.56 Aligned_cols=77 Identities=49% Similarity=1.044 Sum_probs=75.5
Q ss_pred CCCcEEEEEEeecCceeEEeeeeecCCCCccccccccccCCchHHHHHHhhccCCCCChhhHHHHHHhHHHHHHHHHh
Q 030605 90 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 167 (174)
Q Consensus 90 e~~rfvLK~LWleknIgiAvDQ~v~g~~t~PLT~YfFWPr~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe 167 (174)
-++||+|||||||++|||||||+| |+|++|||+||||||+||||+||.+||+||||+++|||+|||++|||||||||
T Consensus 6 ~m~rf~LKvlWlek~IaiAvDQ~v-g~~t~PLT~YfFWPr~DAWe~LK~eLEsK~WIse~e~i~lLN~~TeiIN~WQe 82 (116)
T 2kt9_A 6 VHTSFILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQD 82 (116)
T ss_dssp CCCCEEEEEEECSSCEEEEEEEEE-TTEEEECSCCEEETTSCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeeEEEeccceeEEeeeee-cCCCCCCcceeeCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999 99999999999999999999999999999999999999999999999999998
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=32.80 E-value=36 Score=23.15 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=29.7
Q ss_pred CchHHHHHHhhccCCCCChhhHHHHHHhHHHHHHHHHh
Q 030605 130 KDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 167 (174)
Q Consensus 130 ~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe 167 (174)
+||.+.|+..+-.-+ =..-.+|++|-.|.+-|.+=|+
T Consensus 28 N~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~ 64 (68)
T 1mdy_A 28 NEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQA 64 (68)
T ss_dssp HHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 478899999887544 2345799999999999998776
No 3
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=30.51 E-value=51 Score=21.77 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=28.7
Q ss_pred CchHHHHHHhhccCCCCChhhHHHHHHhHHHHHHHHHh
Q 030605 130 KDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 167 (174)
Q Consensus 130 ~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe 167 (174)
++|.+.|+..+-.-+==..-.+|++|-.|.+-|.+=|+
T Consensus 18 N~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~ 55 (60)
T 2ql2_B 18 NAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSE 55 (60)
T ss_dssp HHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHH
Confidence 47888999888543322245789999999999998776
No 4
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=25.70 E-value=81 Score=24.43 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=34.6
Q ss_pred cccccccC----CchHHHHHHhhccCCCCChhhHHHHHHhHHHHHHH
Q 030605 122 SQYFFWPR----KDAWEELKTTLESKPWISQKMMIILLNQATDIINL 164 (174)
Q Consensus 122 T~YfFWPr----~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINy 164 (174)
+.||-|+. .+-|...+..|+.-+| ++.++-.++..+..+..+
T Consensus 158 ~~f~~~~~~~~~~~~~~~fr~~Ld~~~~-~~~~~~~ii~eA~~aF~~ 203 (215)
T 1wzd_A 158 LGFYHFEGIAKLKVYKDEYREKLNNLEL-SDEQREHLLKEATDAFVF 203 (215)
T ss_dssp CGGGCCTTCSCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHH
T ss_pred ceeeecCCcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHH
Confidence 47888888 3479999999999987 899999999888776554
No 5
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.51 E-value=18 Score=29.74 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=0.0
Q ss_pred cccccccccccccccccccCCCCCcc
Q 030605 2 LSSMALQSTVNGAFTTRSSFPSQKLT 27 (174)
Q Consensus 2 ~~smA~Q~~~~~~~~~~~~~psq~~~ 27 (174)
|++||+|+...+-..+.++|--|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (191)
T 3bbo_W 1 MAAMVLQSSFTSLSLSSNSFLGQRLF 26 (191)
T ss_dssp --------------------------
T ss_pred CcchhhhhhhhccccccccccCcccC
Confidence 78899999887666555666556554
No 6
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.04 E-value=62 Score=22.40 Aligned_cols=39 Identities=26% Similarity=0.190 Sum_probs=25.9
Q ss_pred chHHHHHHhhccCCCCChhhHHHHHHhHHHHHHHHHhcC
Q 030605 131 DAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 169 (174)
Q Consensus 131 DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe~~ 169 (174)
+..+.|+..+-.-+=-....++.||..|++-|.+=|+..
T Consensus 18 ~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~ 56 (80)
T 1nlw_A 18 LSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSD 56 (80)
T ss_dssp HHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455667776632211123457999999999999887753
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.82 E-value=68 Score=22.45 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=28.4
Q ss_pred chHHHHHHhhccCCCCChhhHHHHHHhHHHHHHHHHhc
Q 030605 131 DAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQS 168 (174)
Q Consensus 131 DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe~ 168 (174)
|+.+.|+..+-+-+==....++.||..|++-|.+=|+.
T Consensus 23 ~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~ 60 (88)
T 1nkp_A 23 RSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAE 60 (88)
T ss_dssp HHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55667777765533234779999999999999987764
No 8
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=19.79 E-value=92 Score=21.75 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=28.5
Q ss_pred CchHHHHHHhhccCCCCChhhHHHHHHhHHHHHHHHHh
Q 030605 130 KDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 167 (174)
Q Consensus 130 ~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe 167 (174)
+||.+.||..+-+-|==..-.+|++|--|.+-|.+=|+
T Consensus 30 N~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 30 NHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp HHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 57999999998665422234689999999998887664
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=17.06 E-value=1.1e+02 Score=21.13 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=27.5
Q ss_pred CchHHHHHHhhcc-CCCCChh-hHHHHHHhHHHHHHHHHhc
Q 030605 130 KDAWEELKTTLES-KPWISQK-MMIILLNQATDIINLWQQS 168 (174)
Q Consensus 130 ~DAWEeLK~eLEs-K~WIs~~-e~i~lLNq~TeIINyWQe~ 168 (174)
++++++|+..+-. -+ -... .++.||..|.+-|.+=|+.
T Consensus 21 N~~f~~Lr~~vP~~~~-~~K~~sK~~IL~~AieYI~~Lq~~ 60 (76)
T 3u5v_A 21 NEAFRELGRMCQMHLK-SDKAQTKLLILQQAVQVILGLEQQ 60 (76)
T ss_dssp HHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC-ccccccHHHHHHHHHHHHHHHHHH
Confidence 4788999988762 11 0122 4899999999999988774
No 10
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=16.85 E-value=1.1e+02 Score=25.88 Aligned_cols=42 Identities=24% Similarity=0.470 Sum_probs=27.7
Q ss_pred CceeEEeeeeecCCCCccccccccccCCchHHHHHHhhccCCCCChhhHHHHHHhHHHHHHHHHhcC
Q 030605 103 KNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 169 (174)
Q Consensus 103 knIgiAvDQ~v~g~~t~PLT~YfFWPr~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe~~ 169 (174)
+.|+|-+|-|+ +| ++ =.+|| + .+.=.+.+...++++||.+.|
T Consensus 94 ~Gi~vilD~V~-NH-~s-~~~wF--~--------------------~q~~~Vr~~~~~~~~~Wl~~g 135 (424)
T 2dh2_A 94 KSIRVILDLTP-NY-RG-ENSWF--S--------------------TQVDTVATKVKDALEFWLQAG 135 (424)
T ss_dssp TTCEEEEECCT-TT-TS-SSTTC--S--------------------SCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECC-Cc-CC-Ccccc--c--------------------ccCHHHHHHHHHHHHHHHHcC
Confidence 57899999998 66 44 23333 1 122355677789999999854
Done!