BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030606
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W4D|A Chain A, Acylphosphatase Variant G91a From Pyrococcus Horikoshii
pdb|2W4D|B Chain B, Acylphosphatase Variant G91a From Pyrococcus Horikoshii
pdb|2W4D|C Chain C, Acylphosphatase Variant G91a From Pyrococcus Horikoshii
pdb|2W4D|D Chain D, Acylphosphatase Variant G91a From Pyrococcus Horikoshii
pdb|2W4D|E Chain E, Acylphosphatase Variant G91a From Pyrococcus Horikoshii
pdb|2W4D|F Chain F, Acylphosphatase Variant G91a From Pyrococcus Horikoshii
Length = 90
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 103 WTIE-NATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSN 161
W+++ A +LG+ GWVRN DGSVEA+ G+ + V+ + GP A VT ++V
Sbjct: 20 WSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQGPPLARVTRVEVKWEQ 79
Query: 162 DDPGTGF 168
GF
Sbjct: 80 PKGEKGF 86
>pdb|1W2I|A Chain A, Crystal Structuore Of Acylphosphatase From Pyrococcus
Horikoshii Complexed With Formate
pdb|1W2I|B Chain B, Crystal Structuore Of Acylphosphatase From Pyrococcus
Horikoshii Complexed With Formate
pdb|1V3Z|A Chain A, Crystal Structure Of Acylphosphatase From Pyrococcus
Horikoshii
pdb|1V3Z|B Chain B, Crystal Structure Of Acylphosphatase From Pyrococcus
Horikoshii
Length = 91
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 103 WTIE-NATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSN 161
W+++ A +LG+ GWVRN DGSVEA+ G+ + V+ + GP A VT ++V
Sbjct: 21 WSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQGPPLARVTRVEVKWEQ 80
Query: 162 DDPGTGF 168
GF
Sbjct: 81 PKGEKGF 87
>pdb|3TNV|A Chain A, Acylphosphatase With Thermophilic Surface And Mesophilic
Core
Length = 91
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 104 TIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQV 157
T +LGL GWVRN DGSVE + G+ + V+ M GP A VT ++V
Sbjct: 23 TQREGRKLGLNGWVRNLPDGSVEGVLEGDEERVEAMIGWLHQGPPLARVTRVEV 76
>pdb|2BJD|A Chain A, Sulfolobus Solfataricus Acylphosphatase. Triclinic Space
Group
pdb|2BJD|B Chain B, Sulfolobus Solfataricus Acylphosphatase. Triclinic Space
Group
pdb|2BJE|A Chain A, Acylphosphatase From Sulfolobus Solfataricus. Monclinic
P21 Space Group
pdb|2BJE|C Chain C, Acylphosphatase From Sulfolobus Solfataricus. Monclinic
P21 Space Group
pdb|2BJE|E Chain E, Acylphosphatase From Sulfolobus Solfataricus. Monclinic
P21 Space Group
pdb|2BJE|G Chain G, Acylphosphatase From Sulfolobus Solfataricus. Monclinic
P21 Space Group
Length = 101
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 100 YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVV 152
+R + +A +LG+KG+ +N DGSVE + G +++ ++ +R GP A V
Sbjct: 29 FRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEV 81
>pdb|1Y9O|A Chain A, 1h Nmr Structure Of Acylphosphatase From The
Hyperthermophile Sulfolobus Solfataricus
Length = 103
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 100 YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVV 152
+R + +A +LG+KG+ +N DGSVE + G +++ ++ +R GP A V
Sbjct: 31 FRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEV 83
>pdb|2LXF|A Chain A, Solution Nmr Structure Of A Potential Acylphosphatase From
Giardia Lamblia, Seattle Structural Genomics Center For
Infectious Disease Target Gilaa.01396.A
Length = 121
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 99 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVF 158
F+R +T + A L L G+V N DGSV + G + V + G +VV + +
Sbjct: 48 FFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHKGSPKSVVKKVSIH 107
Query: 159 PSNDDPGTGF 168
S+ GF
Sbjct: 108 ASSRVDADGF 117
>pdb|3TRG|A Chain A, Structure Of An Acylphosphatase From Coxiella Burnetii
Length = 98
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 99 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGL 155
F+R + A +L L GWV+N G VE + G DS+ + + GP A V+ +
Sbjct: 26 FFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIXILTEWLWEGPPQAAVSNV 82
>pdb|2ACY|A Chain A, Acyl-Phosphatase (Common Type) From Bovine Testis
Length = 98
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 99 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQ 141
F+R +T +LGL GWV+N G+V+ G V+ M++
Sbjct: 21 FFRKYTQAEGKKLGLVGWVQNTDQGTVQGQLQGPASKVRHMQE 63
>pdb|1ULR|A Chain A, Crystal Structure Of Tt0497 From Thermus Thermophilus Hb8
Length = 88
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 100 YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFP 159
YR + + A +LGL G+ N DG VE + G ++++ GP A V ++V
Sbjct: 17 YRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLKQGPRLARVEAVEVQW 76
Query: 160 SNDDPGTGF 168
+ GF
Sbjct: 77 GEEAGLKGF 85
>pdb|2K7J|A Chain A, Human Acylphosphatase(Acph) Surface Charge-Optimized
Length = 99
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 99 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQ 141
F+R T +LGL GWV+N G+V+ G V+EM++
Sbjct: 22 FFRKHTQAEGKKLGLVGWVQNTDRGTVQGKLQGPISKVREMQK 64
>pdb|2FHM|A Chain A, Solution Structure Of Bacillus Subtilis Acylphosphatase
pdb|2HLT|A Chain A, Solution Structure Of Bacillus Subtilis Acylphosphatase
pdb|2HLU|A Chain A, Solution Structure Of Bacillus Subtilis Acylphosphatase
pdb|3BR8|A Chain A, Crystal Structure Of Acylphosphatase From Bacillus
Subtilis
Length = 91
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 100 YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFP 159
+R + A + L GWV+NR DG VE L G ++++ + +G + VT + V
Sbjct: 17 FRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKNGSPFSKVTDISVTE 76
Query: 160 SNDDPG 165
S G
Sbjct: 77 SRSLEG 82
>pdb|1URR|A Chain A, A Novel Drosophila Melanogaster Acylphosphatase (Acpdro2)
Length = 102
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 99 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQ 141
F+R T A +LG++GW N RDG+V+ ++ EM+
Sbjct: 25 FFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKH 67
>pdb|2W4C|A Chain A, Human Common-Type Acylphosphatase Variant, A99
Length = 99
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 99 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQ 141
F+R T +LGL GWV+N G+V+ G V+ M++
Sbjct: 22 FFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQE 64
>pdb|2VH7|A Chain A, Crystal Structure Of Human Common-Type Acylphosphatase
Length = 99
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 99 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQ 141
F+R T +LGL GWV+N G+V+ G V+ M++
Sbjct: 22 FFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQE 64
>pdb|2W4P|A Chain A, Human Common-Type Acylphosphatase Variant, A99g
Length = 99
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 99 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQ 141
F+R T +LGL GWV+N G+V+ G V+ M++
Sbjct: 22 FFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQE 64
>pdb|2K7K|A Chain A, Human Acylphosphatase (Acph) Common Type
Length = 99
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 99 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQ 141
F+R T +LGL GWV+N G+V+ G V+ M++
Sbjct: 22 FFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQE 64
>pdb|2GV1|A Chain A, Nmr Solution Structure Of The Acylphosphatase From
Eschaerichia Coli
Length = 92
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 100 YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQ 141
+R T A +LGL G+ +N DGSVE + G V+++ Q
Sbjct: 19 FRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQ 60
>pdb|3TOQ|A Chain A, Acylphosphatase With Mesophilic Surface And Thermophilic
Core
Length = 99
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 99 FYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQ 141
F+R A +LG+ GWV+N G+V+A G V+ +++
Sbjct: 22 FFRKHMQAEAKKLGVVGWVQNTDRGTVQAQLQGPISKVRHLQE 64
>pdb|1APS|A Chain A, Three-Dimensional Structure Of Acylphosphatase. Refinement
And Structure Analysis
Length = 98
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 100 YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEME 140
+R + + A ++G+ GWV+N G+V G + V M+
Sbjct: 22 FRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMK 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,046,470
Number of Sequences: 62578
Number of extensions: 116964
Number of successful extensions: 241
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 20
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)