Query 030606
Match_columns 174
No_of_seqs 152 out of 1106
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 02:39:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3trg_A Acylphosphatase; fatty 100.0 8.8E-35 3E-39 216.2 10.3 94 78-171 5-98 (98)
2 1ulr_A Putative acylphosphatas 100.0 6E-34 2.1E-38 207.3 13.4 88 84-171 1-88 (88)
3 1w2i_A Acylphosphatase; hydrol 100.0 4.9E-34 1.7E-38 209.1 12.6 89 83-171 2-90 (91)
4 2fhm_A Probable acylphosphatas 100.0 1.2E-33 4E-38 206.6 13.8 89 84-172 1-90 (91)
5 2vh7_A Acylphosphatase-1; hydr 100.0 3.3E-33 1.1E-37 207.3 12.4 91 82-172 5-99 (99)
6 2lxf_A Uncharacterized protein 100.0 1.9E-33 6.5E-38 217.2 11.3 94 79-172 28-121 (121)
7 1urr_A CG18505 protein; acylph 100.0 5.3E-33 1.8E-37 207.3 11.7 90 83-172 9-102 (102)
8 2bjd_A Acylphosphatase; hypert 100.0 9.4E-33 3.2E-37 206.3 12.9 88 84-171 13-101 (101)
9 2gv1_A Probable acylphosphatas 100.0 5.6E-33 1.9E-37 203.6 11.3 87 85-171 4-92 (92)
10 1aps_A Acylphosphatase; hydrol 100.0 2.3E-33 7.9E-38 207.7 6.8 91 82-172 4-98 (98)
11 1gxu_A Hydrogenase maturation 100.0 1.6E-30 5.4E-35 190.8 10.3 84 84-171 6-91 (91)
12 3vth_A Hydrogenase maturation 99.9 3.4E-26 1.2E-30 218.4 13.7 92 81-173 6-98 (761)
13 4g9i_A Hydrogenase maturation 99.9 3.9E-25 1.3E-29 211.2 0.7 89 84-173 1-91 (772)
14 4f67_A UPF0176 protein LPG2838 95.0 0.044 1.5E-06 46.2 6.3 53 98-151 30-82 (265)
15 2ogh_A Eukaryotic translation 89.8 0.78 2.7E-05 34.0 6.1 54 90-143 41-95 (108)
16 1yrx_A Hypothetical protein RS 89.4 1.9 6.6E-05 32.4 8.1 60 109-169 34-93 (121)
17 2xzm_F EIF1; ribosome, transla 88.2 1.2 3.9E-05 32.8 5.9 53 91-143 35-88 (101)
18 2iyg_A APPA, antirepressor of 87.8 2.7 9.3E-05 31.8 8.0 58 109-167 46-103 (124)
19 2byc_A Blue-light receptor of 87.1 2.9 0.0001 32.0 7.9 59 109-168 35-93 (137)
20 2if1_A EIF1, SUI1; translation 86.4 0.67 2.3E-05 35.5 3.9 54 90-143 59-113 (126)
21 1x0p_A Hypothetical protein TL 86.3 3 0.0001 32.0 7.6 58 109-167 33-90 (143)
22 3ced_A Methionine import ATP-b 85.7 2.7 9.1E-05 29.9 6.6 59 85-146 21-88 (98)
23 2hfn_A Synechocystis photorece 85.7 3.2 0.00011 32.2 7.6 58 109-167 36-93 (153)
24 2qsw_A Methionine import ATP-b 84.9 2.2 7.5E-05 30.1 5.9 59 85-146 24-90 (100)
25 2qrr_A Methionine import ATP-b 83.8 3.2 0.00011 29.3 6.3 59 85-146 24-90 (101)
26 3dhx_A Methionine import ATP-b 83.7 9.2 0.00031 27.3 8.8 60 84-146 21-88 (106)
27 2f1f_A Acetolactate synthase i 77.4 5 0.00017 31.4 6.0 44 100-145 98-141 (164)
28 2fgc_A Acetolactate synthase, 76.8 5.4 0.00018 32.5 6.1 58 84-145 111-168 (193)
29 1o51_A Hypothetical protein TM 75.4 22 0.00075 26.2 9.6 73 84-156 13-109 (114)
30 2pc6_A Probable acetolactate s 72.8 5.5 0.00019 31.3 5.1 44 100-145 99-142 (165)
31 3gfz_A Klebsiella pneumoniae B 72.3 16 0.00054 31.7 8.4 58 109-167 40-97 (413)
32 2dcl_A Hypothetical UPF0166 pr 59.6 53 0.0018 24.6 10.0 69 94-162 21-111 (127)
33 2rjz_A PILO protein; structura 59.4 23 0.0008 26.8 6.2 37 124-160 80-116 (147)
34 3obi_A Formyltetrahydrofolate 41.3 1.1E+02 0.0037 25.6 8.0 59 99-157 65-124 (288)
35 1d1r_A Hypothetical 11.4 KD pr 40.4 9.1 0.00031 28.8 1.0 43 95-142 50-98 (116)
36 3n0v_A Formyltetrahydrofolate 40.2 79 0.0027 26.5 7.0 59 98-156 65-124 (286)
37 3dxs_X Copper-transporting ATP 39.8 61 0.0021 19.8 4.9 61 84-145 1-62 (74)
38 3nrb_A Formyltetrahydrofolate 37.4 1.1E+02 0.0036 25.7 7.4 59 99-157 64-123 (287)
39 3fry_A Probable copper-exporti 34.9 81 0.0028 19.5 5.1 57 83-145 3-60 (73)
40 2dun_A POL MU, DNA polymerase 34.2 42 0.0014 25.8 3.9 57 82-143 9-67 (133)
41 3o1l_A Formyltetrahydrofolate 33.5 1.4E+02 0.0048 25.2 7.5 58 99-156 81-139 (302)
42 3cm8_B Peptide from RNA-direct 31.2 14 0.00046 21.9 0.5 14 6-19 8-21 (30)
43 2l3m_A Copper-ION-binding prot 30.8 83 0.0029 18.4 6.0 61 83-144 3-64 (71)
44 3lou_A Formyltetrahydrofolate 30.6 1.6E+02 0.0055 24.6 7.4 59 98-156 70-129 (292)
45 3iz5_F 60S ribosomal protein L 30.5 5.9 0.0002 32.0 -1.5 52 94-145 92-162 (190)
46 1nkw_E 50S ribosomal protein L 26.7 17 0.00059 29.9 0.6 52 94-145 115-177 (212)
47 1uv7_A General secretion pathw 25.7 1.4E+02 0.0046 21.6 5.3 65 97-163 22-88 (110)
48 2jz2_A SSL0352 protein; SH3-li 25.2 54 0.0019 22.5 2.8 22 111-132 18-39 (66)
49 3c5t_B Exendin-4, exenatide; l 24.7 34 0.0011 20.3 1.5 14 133-146 8-21 (31)
50 1rl6_A Protein (ribosomal prot 24.4 11 0.00036 30.1 -1.1 52 94-145 87-149 (177)
51 2ckc_A Chromodomain-helicase-D 24.1 50 0.0017 23.5 2.6 30 117-149 29-59 (80)
52 3drn_A Peroxiredoxin, bacterio 24.1 1.7E+02 0.0057 20.7 5.6 40 105-144 96-145 (161)
53 3d22_A TRXH4, thioredoxin H-ty 23.7 1.8E+02 0.006 19.8 5.9 42 105-146 89-133 (139)
54 3ucj_A Carbonic anhydrase; alp 23.1 77 0.0026 25.9 3.9 23 110-132 180-202 (227)
55 3fk8_A Disulphide isomerase; A 21.8 1.1E+02 0.0038 20.7 4.0 40 105-144 78-132 (133)
56 2kuc_A Putative disulphide-iso 21.4 1.9E+02 0.0064 19.3 5.4 43 104-146 75-122 (130)
No 1
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=100.00 E-value=8.8e-35 Score=216.22 Aligned_cols=94 Identities=29% Similarity=0.471 Sum_probs=89.0
Q ss_pred CCCCCCceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEE
Q 030606 78 DTQSPPAKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQV 157 (174)
Q Consensus 78 ~~~~~~~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei 157 (174)
.+.++++++++++|+|+|||||||+|++++|++|||+|||+|++||+|||++||++++|++|+++|+++||.|+|++|++
T Consensus 5 ~~~~~~~~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~~gPp~A~V~~v~~ 84 (98)
T 3trg_A 5 TQKEKNETCIHVTVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWEGPPQAAVSNVNW 84 (98)
T ss_dssp CHHHHHEEEEEEEEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTTCSTTCEEEEEEE
T ss_pred ccCchhhEEEEEEEEEeECCCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCcEEe
Q 030606 158 FPSNDDPGTGFVRK 171 (174)
Q Consensus 158 ~~~e~~~~~~FeIr 171 (174)
++.++.++.+|+|+
T Consensus 85 ~~~~~~~~~~F~IR 98 (98)
T 3trg_A 85 EEIVVEDYSDFRVR 98 (98)
T ss_dssp EEESCCCCSSEEEC
T ss_pred EEcCCCCCCCeEEC
Confidence 99988788999996
No 2
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=100.00 E-value=6e-34 Score=207.27 Aligned_cols=88 Identities=32% Similarity=0.449 Sum_probs=83.9
Q ss_pred ceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEcCCC
Q 030606 84 AKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDD 163 (174)
Q Consensus 84 ~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~e~~ 163 (174)
|++++++|+|+|||||||+|++++|++|||+|||+|++||+|||++||+++++++|+++|+++|+.|+|+++++++.++.
T Consensus 1 m~~~~~~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~gP~~a~V~~v~~~~~~~~ 80 (88)
T 1ulr_A 1 MPRLVALVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLKQGPRLARVEAVEVQWGEEA 80 (88)
T ss_dssp -CEEEEEEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHHHCSTTCEEEEEEEEEECCC
T ss_pred CEEEEEEEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEEEEEEcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCcEEe
Q 030606 164 PGTGFVRK 171 (174)
Q Consensus 164 ~~~~FeIr 171 (174)
++++|+|+
T Consensus 81 ~~~~F~I~ 88 (88)
T 1ulr_A 81 GLKGFHVY 88 (88)
T ss_dssp CCCSEEEC
T ss_pred CCCCCEEC
Confidence 77899985
No 3
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=100.00 E-value=4.9e-34 Score=209.12 Aligned_cols=89 Identities=35% Similarity=0.489 Sum_probs=85.5
Q ss_pred CceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEcCC
Q 030606 83 PAKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSND 162 (174)
Q Consensus 83 ~~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~e~ 162 (174)
.|++++++|+|+|||||||+|++++|++|||+|||+|++||+|||++||+++++++|++||+++|+.|+|++|++++.++
T Consensus 2 ~m~~~~~~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~gP~~a~V~~v~~~~~~~ 81 (91)
T 1w2i_A 2 AIVRAHLKIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQGPPLARVTRVEVKWEQP 81 (91)
T ss_dssp CEEEEEEEEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTTCSTTCEEEEEEEEEECC
T ss_pred CcEEEEEEEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEEEEEEccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCcEEe
Q 030606 163 DPGTGFVRK 171 (174)
Q Consensus 163 ~~~~~FeIr 171 (174)
.++++|+|+
T Consensus 82 ~~~~~F~I~ 90 (91)
T 1w2i_A 82 KGEKGFRIV 90 (91)
T ss_dssp CCCCSEEEC
T ss_pred CCCCCCEEc
Confidence 778899996
No 4
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=100.00 E-value=1.2e-33 Score=206.63 Aligned_cols=89 Identities=31% Similarity=0.446 Sum_probs=84.6
Q ss_pred ceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEcCCC
Q 030606 84 AKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDD 163 (174)
Q Consensus 84 ~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~e~~ 163 (174)
|++++++|+|+|||||||+|++++|++|||+|||+|++||+|||++||+++++++|+++|+++||.|+|++|++++.++.
T Consensus 1 m~~~~~~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~~~p~a~V~~v~~~~~~~~ 80 (91)
T 2fhm_A 1 MLQYRIIVDGRVQGVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKNGSPFSKVTDISVTESRSL 80 (91)
T ss_dssp CEEEEEEEEEECCSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHTTCSSSEEEEEEEEEECCC
T ss_pred CEEEEEEEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHhCCCccEEEEEEEEEecCC
Confidence 57899999999999999999999999999999999999999999999999999999999999987799999999999876
Q ss_pred -CCCCcEEee
Q 030606 164 -PGTGFVRKQ 172 (174)
Q Consensus 164 -~~~~FeIr~ 172 (174)
++++|+|+.
T Consensus 81 ~~~~~F~I~~ 90 (91)
T 2fhm_A 81 EGHHRFSIVY 90 (91)
T ss_dssp CCCCSEEECC
T ss_pred CCCCCeEEEe
Confidence 578999985
No 5
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=100.00 E-value=3.3e-33 Score=207.27 Aligned_cols=91 Identities=25% Similarity=0.404 Sum_probs=84.0
Q ss_pred CCceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHh-cCCCCeEEEEEEEEEc
Q 030606 82 PPAKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCC-HGPSDAVVTGLQVFPS 160 (174)
Q Consensus 82 ~~~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~-~gPp~A~V~~Iei~~~ 160 (174)
..|++++++|+|+|||||||+|++++|++|||+|||+|++||+|||++||+++++++|++||+ ++|+.|+|++|++++.
T Consensus 5 ~~m~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~~p~~a~V~~v~~~~~ 84 (99)
T 2vh7_A 5 NTLISVDYEIFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGSPKSHIDKANFNNE 84 (99)
T ss_dssp -CEEEEEEEEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHTCSTTCEEEEEEEEEE
T ss_pred cceEEEEEEEEEeeCCcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEEEEEe
Confidence 368999999999999999999999999999999999999999999999999999999999998 6899999999999987
Q ss_pred CC---CCCCCcEEee
Q 030606 161 ND---DPGTGFVRKQ 172 (174)
Q Consensus 161 e~---~~~~~FeIr~ 172 (174)
++ .++++|+|+.
T Consensus 85 ~~~~~~~~~~F~I~~ 99 (99)
T 2vh7_A 85 KVILKLDYSDFQIVK 99 (99)
T ss_dssp EEESSCSCSSEEECC
T ss_pred ccCCCCCCCCeEEeC
Confidence 53 3578999973
No 6
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=100.00 E-value=1.9e-33 Score=217.21 Aligned_cols=94 Identities=31% Similarity=0.513 Sum_probs=88.9
Q ss_pred CCCCCceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEE
Q 030606 79 TQSPPAKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVF 158 (174)
Q Consensus 79 ~~~~~~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~ 158 (174)
..++...++.++|+|+|||||||+|++++|++|||+|||+|++||+|||++||++++|++|++||++|||.|+|++|+++
T Consensus 28 ~~~~di~t~~frV~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~gPp~A~V~~v~~~ 107 (121)
T 2lxf_A 28 SSSEDVTTLCYRVTGKVQGVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHKGSPKSVVKKVSIH 107 (121)
T ss_dssp CCSTTEEEEEEEEEECTTCCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHCCTTCCEEEEEEE
T ss_pred CCccCEEEEEEEEEEeeCCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcEEee
Q 030606 159 PSNDDPGTGFVRKQ 172 (174)
Q Consensus 159 ~~e~~~~~~FeIr~ 172 (174)
+.++.++++|+|+.
T Consensus 108 ~~~~~~~~~F~IRR 121 (121)
T 2lxf_A 108 ASSRVDADGFEIRR 121 (121)
T ss_dssp CCCCCCCCEECCCC
T ss_pred ECCCCCCCCeEEcC
Confidence 99888899999973
No 7
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=100.00 E-value=5.3e-33 Score=207.33 Aligned_cols=90 Identities=29% Similarity=0.415 Sum_probs=84.2
Q ss_pred CceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHh-cCCCCeEEEEEEEEEcC
Q 030606 83 PAKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCC-HGPSDAVVTGLQVFPSN 161 (174)
Q Consensus 83 ~~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~-~gPp~A~V~~Iei~~~e 161 (174)
.|++++++|+|+|||||||+|++++|++|||+|||+|++||+|||++||++++|++|++||+ ++|+.|+|++|++++.+
T Consensus 9 ~m~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~gP~~a~V~~v~~~~~~ 88 (102)
T 1urr_A 9 QIFALDFEIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRIPNAKVSKAEFSQIQ 88 (102)
T ss_dssp CEEEEEEEEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCCSTTCEEEEEEECCCE
T ss_pred hcEEEEEEEEEeECCcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcCCCccEEEEEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999 69999999999999887
Q ss_pred C---CCCCCcEEee
Q 030606 162 D---DPGTGFVRKQ 172 (174)
Q Consensus 162 ~---~~~~~FeIr~ 172 (174)
+ .++++|+|+.
T Consensus 89 ~~~~~~~~~F~I~~ 102 (102)
T 1urr_A 89 EIEDYTFTSFDIKH 102 (102)
T ss_dssp EESSCSCSSEEECC
T ss_pred cCCCCCCCCeEEeC
Confidence 4 3578999973
No 8
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=100.00 E-value=9.4e-33 Score=206.26 Aligned_cols=88 Identities=31% Similarity=0.401 Sum_probs=84.1
Q ss_pred ceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEcCCC
Q 030606 84 AKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDD 163 (174)
Q Consensus 84 ~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~e~~ 163 (174)
|++++++|+|+|||||||+|++++|++|||+|||+|++||+|+|++||++++|++|+++|+++|+.|+|++|++++.++.
T Consensus 13 m~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~gP~~A~V~~v~~~~~~~~ 92 (101)
T 2bjd_A 13 LKRMYARVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEVEKVDYSFSEYK 92 (101)
T ss_dssp EEEEEEEEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEECC
T ss_pred hEEEEEEEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHhCCCccEEEEEEEEEccCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-CCCcEEe
Q 030606 164 P-GTGFVRK 171 (174)
Q Consensus 164 ~-~~~FeIr 171 (174)
+ +++|+|+
T Consensus 93 ~~~~~F~I~ 101 (101)
T 2bjd_A 93 GEFEDFETY 101 (101)
T ss_dssp CCCSSEEEC
T ss_pred CCCCCeEEC
Confidence 4 6899985
No 9
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=100.00 E-value=5.6e-33 Score=203.61 Aligned_cols=87 Identities=34% Similarity=0.434 Sum_probs=83.2
Q ss_pred eEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHH-hcCCCCeEEEEEEEEEcCCC
Q 030606 85 KTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRC-CHGPSDAVVTGLQVFPSNDD 163 (174)
Q Consensus 85 ~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L-~~gPp~A~V~~Iei~~~e~~ 163 (174)
.+++++|+|+|||||||+|++++|++|||+|||+|++||+|+|++||+++++++|+++| +++|+.|+|++|++++.++.
T Consensus 4 ~~~~~~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~~gP~~a~V~~v~~~~~~~~ 83 (92)
T 2gv1_A 4 VCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPS 83 (92)
T ss_dssp CEEEEEEEEECTTTTCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHHHHTSSTTSEEEEEEEEEECCS
T ss_pred EEEEEEEEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHhhccCCCceEEEEEEEEEcCCC
Confidence 48999999999999999999999999999999999999999999999999999999999 88999999999999999876
Q ss_pred -CCCCcEEe
Q 030606 164 -PGTGFVRK 171 (174)
Q Consensus 164 -~~~~FeIr 171 (174)
++++|+|+
T Consensus 84 ~~~~~F~I~ 92 (92)
T 2gv1_A 84 GELTDFRIR 92 (92)
T ss_dssp SCCCCCEEC
T ss_pred CCCCCEEEC
Confidence 57899985
No 10
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=99.98 E-value=2.3e-33 Score=207.74 Aligned_cols=91 Identities=26% Similarity=0.449 Sum_probs=85.1
Q ss_pred CCceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHh-cCCCCeEEEEEEEEEc
Q 030606 82 PPAKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCC-HGPSDAVVTGLQVFPS 160 (174)
Q Consensus 82 ~~~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~-~gPp~A~V~~Iei~~~ 160 (174)
..|++++++|+|+|||||||+|++++|++|||+|||+|++||+|||++||+++++++|+++|+ ++|+.|+|++|++++.
T Consensus 4 ~~m~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~gP~~a~V~~v~~~~~ 83 (98)
T 1aps_A 4 RPLKSVDYEVFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWLSKVGSPSSRIDRTNFSNE 83 (98)
T ss_dssp SCEEEEEEEEECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHHHHHHHHHSSSSCCCSSSCCCCEEEEEE
T ss_pred cceEEEEEEEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHhhcCCCceEEEEEEEEEe
Confidence 368999999999999999999999999999999999999999999999999999999999999 5999999999999988
Q ss_pred CC---CCCCCcEEee
Q 030606 161 ND---DPGTGFVRKQ 172 (174)
Q Consensus 161 e~---~~~~~FeIr~ 172 (174)
++ .++++|+|+.
T Consensus 84 ~~~~~~~~~~F~I~~ 98 (98)
T 1aps_A 84 KTISKLEYSNFSVRY 98 (98)
T ss_dssp EEESSCCSSSEEEEC
T ss_pred cccCCCCCCCeEEeC
Confidence 76 3578999973
No 11
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=99.97 E-value=1.6e-30 Score=190.82 Aligned_cols=84 Identities=29% Similarity=0.345 Sum_probs=78.3
Q ss_pred ceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhc-CCCCeEEEEEEEEEcCC
Q 030606 84 AKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCH-GPSDAVVTGLQVFPSND 162 (174)
Q Consensus 84 ~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~-gPp~A~V~~Iei~~~e~ 162 (174)
.++++++|+|+|||||||+|++++|++|||+|||+|++|| |||++||++ ++|+++|++ +|+.|+|++|++++.++
T Consensus 6 ~~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG-Vei~~eG~~---~~f~~~l~~~~P~~A~V~~v~~~~~~~ 81 (91)
T 1gxu_A 6 SCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDP---EVFLVQLYQHCPPLARIDSVEREPFIW 81 (91)
T ss_dssp EEEEEEEEEEECSSSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCC---HHHHHHHHHTCCTTCEEEEEEEEEEEE
T ss_pred hcEEEEEEEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCc-EEEEEEECH---HHHHHHHhhCCCCCEEEEEEEEEEcCC
Confidence 4589999999999999999999999999999999999999 999999998 899999986 79999999999999877
Q ss_pred C-CCCCcEEe
Q 030606 163 D-PGTGFVRK 171 (174)
Q Consensus 163 ~-~~~~FeIr 171 (174)
. .+++|+|+
T Consensus 82 ~~~~~~F~I~ 91 (91)
T 1gxu_A 82 SALPTEFTIR 91 (91)
T ss_dssp SSCCSSEEEC
T ss_pred CCCCCCeEEC
Confidence 5 57899985
No 12
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=99.93 E-value=3.4e-26 Score=218.44 Aligned_cols=92 Identities=23% Similarity=0.294 Sum_probs=87.7
Q ss_pred CCCceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHh-cCCCCeEEEEEEEEE
Q 030606 81 SPPAKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCC-HGPSDAVVTGLQVFP 159 (174)
Q Consensus 81 ~~~~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~-~gPp~A~V~~Iei~~ 159 (174)
.++|++++++|+|+|||||||+|++++|+++||+|||+|++|| |||++||+++++++|++||+ ++|+.|+|++|++++
T Consensus 6 ~~~m~~~~i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG-Vei~~eG~~~~l~~f~~~L~~~~Pp~a~V~~v~~~~ 84 (761)
T 3vth_A 6 VPQIQARQINIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSG-LYIEVEGEEKDIEAFIREIKENPPSLSVIDEIQVRE 84 (761)
T ss_dssp CCCCEEEEEEEEEECSSSSHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEECHHHHHHHHHHHHHSCCTTCEEEEEEEEE
T ss_pred CCccEEEEEEEEEEeCCcCcHHHHHHHHHHcCCeEEEEECCCe-EEEEEEECHHHHHHHHHHHhcCCCCCeEEEeeeEEE
Confidence 3678999999999999999999999999999999999999999 99999999999999999999 689999999999999
Q ss_pred cCCCCCCCcEEeec
Q 030606 160 SNDDPGTGFVRKQT 173 (174)
Q Consensus 160 ~e~~~~~~FeIr~t 173 (174)
.++.++.+|+|+++
T Consensus 85 ~~~~~~~~F~I~~s 98 (761)
T 3vth_A 85 VEVKEYKDFKIVGS 98 (761)
T ss_dssp ECCCCCSSEEECCC
T ss_pred cCCcCCCCceeeec
Confidence 98888899999875
No 13
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=99.89 E-value=3.9e-25 Score=211.17 Aligned_cols=89 Identities=22% Similarity=0.330 Sum_probs=84.1
Q ss_pred ceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCC-CcEEEEEEcCHHhHHHHHHHHh-cCCCCeEEEEEEEEEcC
Q 030606 84 AKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRD-GSVEALFSGNPDSVKEMEQRCC-HGPSDAVVTGLQVFPSN 161 (174)
Q Consensus 84 ~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~D-GsVEI~aeG~ee~Ie~Fi~~L~-~gPp~A~V~~Iei~~~e 161 (174)
|++++|+|+|.|||||||||||++|+++||+|||+|.++ | |+|++||+++++++|++.|+ +.||+|+|++|++++++
T Consensus 1 M~~~~i~v~G~VQGVGFRPfv~~lA~~~~l~G~V~N~~~~g-V~i~~~g~~~~~~~F~~~l~~~~Ppla~i~~~~~~~~~ 79 (772)
T 4g9i_A 1 MKAYHIHVQGIVQAVGFRPFVYRIAHEHNLRGYVKNLGDAG-VEIVVEGREEDIEAFIEDLYKKKPPLARIDRIEKKEIP 79 (772)
T ss_dssp CCCCEEEECSSTTTSSCHHHHHHHHHHTTCCCBCCCCSTTC-EEEECCSCSTTHHHHHHHHHHSSCSSCCCCCCCCCCCC
T ss_pred CceEEEEEEEEEeCCCccHHHHHHHHHcCCeEEEEECCCCe-EEEEEEECHHHHHHHHHHHhhCCCCCeEEEEEEEEEcC
Confidence 678999999999999999999999999999999999876 7 99999999999999999997 56999999999999999
Q ss_pred CCCCCCcEEeec
Q 030606 162 DDPGTGFVRKQT 173 (174)
Q Consensus 162 ~~~~~~FeIr~t 173 (174)
+.++++|+|+++
T Consensus 80 ~~~~~~F~I~~s 91 (772)
T 4g9i_A 80 PQGFDRFYIEKS 91 (772)
T ss_dssp CSSCCSSCBCCC
T ss_pred CCCCCCcEEEec
Confidence 888999999875
No 14
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=94.98 E-value=0.044 Score=46.23 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=48.1
Q ss_pred cchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeE
Q 030606 98 VFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAV 151 (174)
Q Consensus 98 VGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~ 151 (174)
--+|.+.+..+.++||+|.+.-..+| +-..+.|+.+.+++|+++++..|..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~G~i~~a~eG-iN~t~~g~~~~~~~~~~~l~~~~~~~~ 82 (265)
T 4f67_A 30 RSLREPILTKMHEIGIKGTIILAHEG-VNGGFAGNREQMNVFYDYLRSDSRFAD 82 (265)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEETTE-EEEEEEECHHHHHHHHHHHTTSGGGTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcCcc-ceEEEEeCHHHHHHHHHHHHhCCCCCC
Confidence 36899999999999999999999999 999999999999999999998775543
No 15
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=89.81 E-value=0.78 Score=33.98 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=42.7
Q ss_pred EEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCH-HhHHHHHHHH
Q 030606 90 VVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNP-DSVKEMEQRC 143 (174)
Q Consensus 90 ~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~e-e~Ie~Fi~~L 143 (174)
+|+|.-.++-....++.+..+++..|.|...+++--+|++||+- +.|.+|+...
T Consensus 41 ~V~Gl~~~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 95 (108)
T 2ogh_A 41 TVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQ 95 (108)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHH
T ss_pred EEeCCCcchhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHc
Confidence 47776667788888999999999999999886665689999984 6666666544
No 16
>1yrx_A Hypothetical protein RSPH03001874; ferredoxin-like fold, flavin binding, photoreceptor, transcr; HET: FMN D9G; 2.30A {Rhodobacter sphaeroides 2} SCOP: d.58.10.2 PDB: 2bun_A*
Probab=89.38 E-value=1.9 Score=32.45 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=48.9
Q ss_pred HhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEcCCCCCCCcE
Q 030606 109 TQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDDPGTGFV 169 (174)
Q Consensus 109 ~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~e~~~~~~Fe 169 (174)
.+.||+|.-.-. +|..-=++||+++.|+++.+.+.+.|....|..+...+++...|.++.
T Consensus 34 ~~~gITG~Ll~~-~g~F~Q~LEG~~~~V~~Ly~rI~~D~RH~~v~~l~~~~i~~R~F~~Ws 93 (121)
T 1yrx_A 34 ARAQLTGALFYS-QGVFFQWLEGRPAAVAEVMTHIQRDRRHSNVEILAEEPIAKRRFAGWH 93 (121)
T ss_dssp HHHTCEEEEEEE-TTEEEEEEEECHHHHHHHHHHHHTCTTEEEEEEEEEEEESSCSCSSEE
T ss_pred hhcCCEEEEEEe-CCEEEEEecCCHHHHHHHHHHHhcCCCcCCeEEEEeeeccccccCCCc
Confidence 456999996544 454555789999999999999999999999999999988876666544
No 17
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=88.15 E-value=1.2 Score=32.82 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=38.7
Q ss_pred EEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCH-HhHHHHHHHH
Q 030606 91 VKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNP-DSVKEMEQRC 143 (174)
Q Consensus 91 ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~e-e~Ie~Fi~~L 143 (174)
|+|.-.++-....++.+..+++..|.|...+++--+|++||+- +.|.+|+...
T Consensus 35 V~Gl~~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 88 (101)
T 2xzm_F 35 VEGIPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE 88 (101)
T ss_dssp EECCCTTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH
T ss_pred EecCCCchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc
Confidence 4443344455678888888899999999887766789999984 6666666543
No 18
>2iyg_A APPA, antirepressor of PPSR, sensor of blue light; signal transduction; HET: FMN; 2.3A {Rhodobacter sphaeroides} PDB: 2iyi_A*
Probab=87.80 E-value=2.7 Score=31.78 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=47.1
Q ss_pred HhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEcCCCCCCC
Q 030606 109 TQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDDPGTG 167 (174)
Q Consensus 109 ~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~e~~~~~~ 167 (174)
.+.||+|.-.-. +|..-=++||+++.|+++.+.|.+.|....|..+...+++...|.+
T Consensus 46 ~~~gITG~Ll~~-~g~F~Q~LEG~~~~V~~Ly~rI~~D~RH~~v~~L~~~~i~~R~F~~ 103 (124)
T 2iyg_A 46 ARAQLTGALFYS-QGVFFQWLEGRPAAVAEVMTHIQRDRRHSNVEILAEEPIAKRRFAG 103 (124)
T ss_dssp HHHTCEEEEEEE-TTEEEEEEEECHHHHHHHHHHHHHCTTEEEEEEEEEEECSSCSSTT
T ss_pred hhcCCEEEEEEc-CCEEEEEeeCCHHHHHHHHHHHhcCCCcCCeEEEEeeecccCccCC
Confidence 456999996544 4545557899999999999999999999999999998887665544
No 19
>2byc_A Blue-light receptor of the BLUF-family; signaling protein, photoreceptor, flavin; HET: FMN; 1.9A {Rhodobacter sphaeroides} SCOP: d.58.10.2
Probab=87.09 E-value=2.9 Score=32.03 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=47.7
Q ss_pred HhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEcCCCCCCCc
Q 030606 109 TQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDDPGTGF 168 (174)
Q Consensus 109 ~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~e~~~~~~F 168 (174)
.+.||+|.-.-. +|..-=++||+++.|+.+.+.|.+.|....|..+...+++...|.++
T Consensus 35 ~~~gITG~Ll~~-~g~F~QvLEG~~~~V~~L~~rI~~D~RH~~v~~L~~~~i~~R~F~~W 93 (137)
T 2byc_A 35 LRLGITGILLYN-GVHFVQTIEGPRSACDELFRLISADPRHQEILAFDLEPITARRFPDW 93 (137)
T ss_dssp HHHTCEEEEEEC-SSEEEEEEEEEHHHHHHHHHHHHTCTTEEEEEEEEEEECSSCSSTTC
T ss_pred hhcCCEEEEEEe-CCEEEEEeeCCHHHHHHHHHHHhcCCCcCCeEEEEecccCCCcCCCC
Confidence 356999997644 35455578999999999999999999999999999988876655443
No 20
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=86.36 E-value=0.67 Score=35.50 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=41.5
Q ss_pred EEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCH-HhHHHHHHHH
Q 030606 90 VVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNP-DSVKEMEQRC 143 (174)
Q Consensus 90 ~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~e-e~Ie~Fi~~L 143 (174)
+|+|.-.++-+...++.+..+++..|.|+..+++--+|++||+- +.|.+|+...
T Consensus 59 ~V~GL~~~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~ 113 (126)
T 2if1_A 59 TVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI 113 (126)
T ss_dssp EEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH
T ss_pred EEeCCCCchhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc
Confidence 57776666777888888889999999999876655679999984 6666665443
No 21
>1x0p_A Hypothetical protein TLL0078; BLUF, FAD, structural genomics, electron transport; HET: FAD; 2.00A {Thermosynechococcus elongatus} SCOP: d.58.10.2
Probab=86.27 E-value=3 Score=31.97 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=47.0
Q ss_pred HhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEcCCCCCCC
Q 030606 109 TQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDDPGTG 167 (174)
Q Consensus 109 ~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~e~~~~~~ 167 (174)
.+.||+|.-.-. +|..-=++||+++.|+++.+.|.+.|....|..+...+++...|.+
T Consensus 33 ~~~~ITG~Ll~~-~g~F~Q~LEG~~~~V~~l~~rI~~D~RH~~v~~l~~~~i~~R~F~~ 90 (143)
T 1x0p_A 33 LRDGITGMLCYG-NGMFLQTLEGDRQKVSETYARILKDPRHHSAEIVEFKAIEERTFIN 90 (143)
T ss_dssp HHHTCEEEEEEE-TTEEEEEEEEEHHHHHHHHHHHHTCTTEEEEEEEEEEECSSCSSCS
T ss_pred hhcCCEEEEEEc-CCEEEEEecCCHHHHHHHHHHHhcCCCcCCeEEEEeeeccccccCC
Confidence 456999996543 4545557899999999999999999999999999998887665543
No 22
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=85.70 E-value=2.7 Score=29.94 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=48.9
Q ss_pred eEEEEEEEeEEcccchhHHHHHHHHhcCC-----eEEEEeCC---CCcEEEEEEc-CHHhHHHHHHHHhcC
Q 030606 85 KTVRVVVKGRVQGVFYRNWTIENATQLGL-----KGWVRNRR---DGSVEALFSG-NPDSVKEMEQRCCHG 146 (174)
Q Consensus 85 ~r~~i~ItGrVQGVGFR~fV~rlA~~LgL-----~G~VrN~~---DGsVEI~aeG-~ee~Ie~Fi~~L~~g 146 (174)
..+++.+.|... .-|.+.++++++|+ .|-|.... -|...+.+.| +++++++.+++|++.
T Consensus 21 ~lvrL~f~g~~~---~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~ 88 (98)
T 3ced_A 21 YIVRLVFAGSTT---TEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIER 88 (98)
T ss_dssp EEEEEEEEEESC---HHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHT
T ss_pred EEEEEEECCCcc---CchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHC
Confidence 378888888743 68999999999998 78877754 4788888999 899999999999854
No 23
>2hfn_A Synechocystis photoreceptor (SLR1694); beta sheet ferredoxin-like fold, flavin binding protein, electron transport; HET: FMN; 1.80A {Synechocystis SP} PDB: 2hfo_A* 3mzi_A*
Probab=85.69 E-value=3.2 Score=32.17 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=46.9
Q ss_pred HhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEcCCCCCCC
Q 030606 109 TQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDDPGTG 167 (174)
Q Consensus 109 ~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~e~~~~~~ 167 (174)
.+.||+|.-.-. +|..-=++||+++.|+++.+.|.+.|....|..+...+++...|.+
T Consensus 36 ~~~gITG~Ll~~-~g~F~Q~LEG~~~~V~~l~~rI~~D~RH~~v~~l~~~~i~~R~F~~ 93 (153)
T 2hfn_A 36 PANGITGLLCYS-KPAFLQVLEGECEQVNETYHRIVQDERHHSPQIIECMPIRRRNFEV 93 (153)
T ss_dssp HHHTCEEEEEEE-TTEEEEEEEEEHHHHHHHHHHHHTCTTEEEEEEEEEEECSSCSSTT
T ss_pred hhcCcEEEEEEe-CCEEEEEeeCCHHHHHHHHHHHhcCCCcCCeEEEEecccCCCccCC
Confidence 356999996543 4545557899999999999999999999999999998887665543
No 24
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=84.92 E-value=2.2 Score=30.11 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=48.4
Q ss_pred eEEEEEEEeEEcccchhHHHHHHHHhcCC-----eEEEEeCC---CCcEEEEEEcCHHhHHHHHHHHhcC
Q 030606 85 KTVRVVVKGRVQGVFYRNWTIENATQLGL-----KGWVRNRR---DGSVEALFSGNPDSVKEMEQRCCHG 146 (174)
Q Consensus 85 ~r~~i~ItGrVQGVGFR~fV~rlA~~LgL-----~G~VrN~~---DGsVEI~aeG~ee~Ie~Fi~~L~~g 146 (174)
+.+++.+.|.. ..-|.+.++++++|+ .|-|.... -|...+.+.|+++++++.+++|++.
T Consensus 24 ~lv~l~f~g~~---~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 90 (100)
T 2qsw_A 24 KIVRLLFHGEQ---AKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKL 90 (100)
T ss_dssp EEEEEEEESCS---CSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred EEEEEEEcCCC---cCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHc
Confidence 36788888863 368999999999998 77777754 4788899999999999999999854
No 25
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=83.83 E-value=3.2 Score=29.32 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=48.1
Q ss_pred eEEEEEEEeEEcccchhHHHHHHHHhcCC-----eEEEEeCCC---CcEEEEEEcCHHhHHHHHHHHhcC
Q 030606 85 KTVRVVVKGRVQGVFYRNWTIENATQLGL-----KGWVRNRRD---GSVEALFSGNPDSVKEMEQRCCHG 146 (174)
Q Consensus 85 ~r~~i~ItGrVQGVGFR~fV~rlA~~LgL-----~G~VrN~~D---GsVEI~aeG~ee~Ie~Fi~~L~~g 146 (174)
+.+++.+.|. ...-|.+.++++++|+ .|-+....+ |...+.+.|+++++++.+++|++.
T Consensus 24 ~lv~l~f~g~---~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 90 (101)
T 2qrr_A 24 PLVRMEFTGA---TVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLREN 90 (101)
T ss_dssp EEEEEEECTT---SCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred EEEEEEEcCC---CcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 3677777775 3368999999999998 777777544 788899999999999999999854
No 26
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=83.69 E-value=9.2 Score=27.32 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=48.7
Q ss_pred ceEEEEEEEeEEcccchhHHHHHHHHhcCC-----eEEEEeC---CCCcEEEEEEcCHHhHHHHHHHHhcC
Q 030606 84 AKTVRVVVKGRVQGVFYRNWTIENATQLGL-----KGWVRNR---RDGSVEALFSGNPDSVKEMEQRCCHG 146 (174)
Q Consensus 84 ~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL-----~G~VrN~---~DGsVEI~aeG~ee~Ie~Fi~~L~~g 146 (174)
..-+++.+.|.. ...|.+.++++++|+ .|-|... .-|+..+.+.|+++++++.+++|++.
T Consensus 21 ~~lvrL~f~g~~---~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 21 VPMLRLEFTGQS---VDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp EEEEEEEEEEEC---TTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred ceEEEEEEcCCc---cChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 456788888864 357899999999996 5666664 44688899999999999999999864
No 27
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=77.40 E-value=5 Score=31.44 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhc
Q 030606 100 YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCH 145 (174)
Q Consensus 100 FR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~ 145 (174)
=|.=+.++|+-++ |.|-.....++.+++.|+++++++|++.++.
T Consensus 98 ~r~~i~~~~~~fr--a~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~ 141 (164)
T 2f1f_A 98 GRDEVKRNTEIFR--GQIIDVTPSLYTVQLAGTSGKLDAFLASIRD 141 (164)
T ss_dssp HHHHHHHHHHHTT--CEEEEECSSEEEEEEEECHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHcC--CEEEEECCCEEEEEEeCCHHHHHHHHHHHHh
Confidence 5899999999998 8888888889999999999999999999973
No 28
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=76.80 E-value=5.4 Score=32.46 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=46.3
Q ss_pred ceEEEEEEEeEEcccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhc
Q 030606 84 AKTVRVVVKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCH 145 (174)
Q Consensus 84 ~~r~~i~ItGrVQGVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~ 145 (174)
..+--+.|+=...+- |.=+.++|+-++ |.|-.....++.|++.|+++++++|++.++.
T Consensus 111 v~REl~LiKV~~~~~--r~ei~~i~~~fr--a~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~ 168 (193)
T 2fgc_A 111 VEREMALIKVRFDED--KQEIFQLVEIFR--GKIIDVSREGAIIEITGARSKVEAFINLLPQ 168 (193)
T ss_dssp EEEEEEEEEEECSSC--HHHHHHHHHHTT--CEEEEECSSEEEEEEEECHHHHHHHHHHSCG
T ss_pred ceeEEEEEEEeCCcC--HHHHHHHHHHcC--CEEEEEcCCEEEEEEcCCHHHHHHHHHHhhh
Confidence 334444454344443 999999999998 8888888889999999999999999999963
No 29
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=75.40 E-value=22 Score=26.19 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=52.6
Q ss_pred ceEEEEEEEe--EEcccchhHHHHHHHHhcCCeEE-E-EeC------------------CCCcEEEEEEcCHHhHHHHHH
Q 030606 84 AKTVRVVVKG--RVQGVFYRNWTIENATQLGLKGW-V-RNR------------------RDGSVEALFSGNPDSVKEMEQ 141 (174)
Q Consensus 84 ~~r~~i~ItG--rVQGVGFR~fV~rlA~~LgL~G~-V-rN~------------------~DGsVEI~aeG~ee~Ie~Fi~ 141 (174)
|..++|.+.- +.+|--.=.|+.++|++.|+.|+ | ++. .|.-|.|++-.+++++++|+.
T Consensus 13 ~~~Lriy~~E~~~~~g~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~ 92 (114)
T 1o51_A 13 MKLLKIYLGEKDKHSGKPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLK 92 (114)
T ss_dssp EEEEEEEEETTCEETTEEHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHH
T ss_pred eEEEEEEECCccccCCeEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHH
Confidence 5566666533 67788788999999999999998 3 332 123478888899999999999
Q ss_pred HHhcC--CCCeEEEEEE
Q 030606 142 RCCHG--PSDAVVTGLQ 156 (174)
Q Consensus 142 ~L~~g--Pp~A~V~~Ie 156 (174)
.++.- ....-+++++
T Consensus 93 ~l~~~v~~Glvt~e~V~ 109 (114)
T 1o51_A 93 EIDNIDFDGLVFTADVN 109 (114)
T ss_dssp HHHTCCCCSEEEEEEEE
T ss_pred HHHHHhCCCEEEEEEEE
Confidence 99863 3344444444
No 30
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=72.82 E-value=5.5 Score=31.34 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhc
Q 030606 100 YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCH 145 (174)
Q Consensus 100 FR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~ 145 (174)
=|.=+.++|+-++ |.|-.....++.+++.|+++++++|++.++.
T Consensus 99 ~r~~i~~~~~~fr--a~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~ 142 (165)
T 2pc6_A 99 DREEMKRLADIFR--GNIIDVTNELYTIELTGTRSKLDGFLQAVDC 142 (165)
T ss_dssp HHHHHHHHHHHTT--CEEEEEETTEEEEEEEECHHHHHHHHHHSCG
T ss_pred cHHHHHHHHHHcC--CEEEEEcCCEEEEEEcCCHHHHHHHHHHhhh
Confidence 5899999999998 8888888889999999999999999999963
No 31
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A*
Probab=72.29 E-value=16 Score=31.74 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=46.6
Q ss_pred HhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEcCCCCCCC
Q 030606 109 TQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPSNDDPGTG 167 (174)
Q Consensus 109 ~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~e~~~~~~ 167 (174)
.+.||+|.-.-. +|.--=++||+++.|+.+.+.+.+.|....|..+....++...|.+
T Consensus 40 ~~~~itG~L~~~-~~~F~Q~lEG~~~~v~~l~~~I~~D~RH~~v~~l~~~~~~~r~F~~ 97 (413)
T 3gfz_A 40 LPLGITGILLFN-GLQFFQVLEGTEEALESLFSEIQSDPRHRDVVELMRDYSAYRRFHG 97 (413)
T ss_dssp GGGTCEEEEEEC-SSEEEEEEEEEHHHHHHHHHHHHTCTTCEEEEEEEEEECSSCSSTT
T ss_pred cccCcEEEEEEe-CCEEEEEEeCCHHHHHHHHHHHhcCCCcCCeEEEEEeecCcccCCC
Confidence 356999996643 4445557899999999999999999999999999888887655543
No 32
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=59.63 E-value=53 Score=24.61 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=51.4
Q ss_pred EEcccchhHHHHHHHHhcCCeEEE--EeC------------------CCCcEEEEEEcCHHhHHHHHHHHhcC--CCCeE
Q 030606 94 RVQGVFYRNWTIENATQLGLKGWV--RNR------------------RDGSVEALFSGNPDSVKEMEQRCCHG--PSDAV 151 (174)
Q Consensus 94 rVQGVGFR~fV~rlA~~LgL~G~V--rN~------------------~DGsVEI~aeG~ee~Ie~Fi~~L~~g--Pp~A~ 151 (174)
+.+|--.=.|+..+|++.|+.|+. ++. .|--|.|++-.+++++++|+..+..- ....-
T Consensus 21 ~~~g~pL~~~Iv~~a~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPVvIe~Vd~~eki~~~l~~l~~lv~~GlVt 100 (127)
T 2dcl_A 21 KWEGRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSRVHSSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPMIKDGMIT 100 (127)
T ss_dssp EETTEEHHHHHHHHHHHTTCSCEEEEECSEEEC--------------CCCEEEEEEEEEHHHHHHHHHHHTTTCSSSEEE
T ss_pred ccCCcCHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEecceeeecCCCCCEEEEEEcCHHHHHHHHHHHHHHhCCCEEE
Confidence 677777888999999999999873 222 23357788888999999999999853 44566
Q ss_pred EEEEEEEEcCC
Q 030606 152 VTGLQVFPSND 162 (174)
Q Consensus 152 V~~Iei~~~e~ 162 (174)
++++++.....
T Consensus 101 ~e~Vev~~~~~ 111 (127)
T 2dcl_A 101 VEPTIVLWVGT 111 (127)
T ss_dssp EEECEEEECCS
T ss_pred EEEEEEEEecC
Confidence 66776666543
No 33
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=59.37 E-value=23 Score=26.85 Aligned_cols=37 Identities=8% Similarity=0.158 Sum_probs=34.3
Q ss_pred cEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEEEEc
Q 030606 124 SVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQVFPS 160 (174)
Q Consensus 124 sVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei~~~ 160 (174)
-|.|.+.|+-.++-.|+..+..-|....++++++...
T Consensus 80 Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~~~~i~~~ 116 (147)
T 2rjz_A 80 PIQISVVGGYHDLATFVSGVSSLPRIVTLHDFEIKPV 116 (147)
T ss_dssp EEEEEEEECHHHHHHHHHHHHTSSSCEEEEEEEEEES
T ss_pred eEEEEEEEeHHHHHHHHHHHHcCCcEEEEeeeEEeec
Confidence 4899999999999999999999999999999998864
No 34
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=41.29 E-value=1.1e+02 Score=25.63 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=47.6
Q ss_pred chhHHHHHHHHhcCCeEEEEeCCCC-cEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEE
Q 030606 99 FYRNWTIENATQLGLKGWVRNRRDG-SVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQV 157 (174)
Q Consensus 99 GFR~fV~rlA~~LgL~G~VrN~~DG-sVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei 157 (174)
-+|.-...+|.++++.-.+.....- +|-|.+.|....++++++.++.|.-.++|.-|--
T Consensus 65 ~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis 124 (288)
T 3obi_A 65 SLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS 124 (288)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence 5777788899999999888765433 6788899999999999999998876688776643
No 35
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=40.36 E-value=9.1 Score=28.78 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=28.4
Q ss_pred Ecccc-----hhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCH-HhHHHHHHH
Q 030606 95 VQGVF-----YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNP-DSVKEMEQR 142 (174)
Q Consensus 95 VQGVG-----FR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~e-e~Ie~Fi~~ 142 (174)
|||.. ....++.+..+++..|.|++ + +|++||+- +.|.+|+..
T Consensus 50 V~Gl~~~~~dlk~laK~LKkk~acgGtVk~---~--~IeiQGD~r~~i~~~L~~ 98 (116)
T 1d1r_A 50 ITGVDLDDAELTKLAAELKKKCGCGGAVKD---G--VIEIQGDKRDLLKSLLEA 98 (116)
T ss_dssp EECCCSCHHHHHHHHHHHTTSSSSCCBCCS---S--CEEECSCCHHHHHHHHHH
T ss_pred EeCCcCchhhHHHHHHHHHHHhcCCcEEcC---C--EEEEeCcHHHHHHHHHHH
Confidence 77764 34455555556688899973 4 68899984 666666543
No 36
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=40.17 E-value=79 Score=26.46 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=46.8
Q ss_pred cchhHHHHHHHHhcCCeEEEEeCCC-CcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEE
Q 030606 98 VFYRNWTIENATQLGLKGWVRNRRD-GSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQ 156 (174)
Q Consensus 98 VGFR~fV~rlA~~LgL~G~VrN~~D-GsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Ie 156 (174)
--++.-...+|.++++...+..... -+|-|.+.|....++++++.++.|.-.++|.-|-
T Consensus 65 ~~L~~~f~~la~~l~m~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Vi 124 (286)
T 3n0v_A 65 AGFRAGLAERSEAFGMAFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVV 124 (286)
T ss_dssp HHHHHHHHHHHGGGTCEEEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEE
Confidence 3467777889999999988885533 2688888999999999999999886667776653
No 37
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=39.79 E-value=61 Score=19.81 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=37.6
Q ss_pred ceEEEEEEEeEEcccchhHHHHHHHHhc-CCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhc
Q 030606 84 AKTVRVVVKGRVQGVFYRNWTIENATQL-GLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCH 145 (174)
Q Consensus 84 ~~r~~i~ItGrVQGVGFR~fV~rlA~~L-gL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~ 145 (174)
|++..+.|.|.--+ +--.-+.+.-.++ |+...--|...+++.|.........+.+.+.+++
T Consensus 1 M~~~~~~v~gm~C~-~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 1 MRKIQVGVTGMTCA-ACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp CEEEEEEEECCCSH-HHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred CcEEEEEECCcCCH-HHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44566666664332 3444454444454 7777778889998888765443456777777764
No 38
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=37.43 E-value=1.1e+02 Score=25.67 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=47.6
Q ss_pred chhHHHHHHHHhcCCeEEEEeCCC-CcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEEE
Q 030606 99 FYRNWTIENATQLGLKGWVRNRRD-GSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQV 157 (174)
Q Consensus 99 GFR~fV~rlA~~LgL~G~VrN~~D-GsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Iei 157 (174)
-+|.-...+|.+++++-.+..... -+|-|.+.|....++++++.++.|.-.++|.-|-.
T Consensus 64 ~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis 123 (287)
T 3nrb_A 64 DFNSAFGKVVEKYNAEWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIIS 123 (287)
T ss_dssp HHHHHHHHHHGGGTCEEEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCeeEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEe
Confidence 678888899999999977876533 26888999999999999999998866677776543
No 39
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=34.90 E-value=81 Score=19.49 Aligned_cols=57 Identities=9% Similarity=-0.027 Sum_probs=37.8
Q ss_pred CceEEEEEEEeEEcccchhHHHHH-HHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhc
Q 030606 83 PAKTVRVVVKGRVQGVFYRNWTIE-NATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCH 145 (174)
Q Consensus 83 ~~~r~~i~ItGrVQGVGFR~fV~r-lA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~ 145 (174)
+|++..+.|.|.--+ +--.-+.+ +.. -|+....-|...+++.|. .+ ..+.+.+.+++
T Consensus 3 ~m~~~~~~v~gm~C~-~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~--~~--~~~~i~~~i~~ 60 (73)
T 3fry_A 3 SVEKIVLELSGLSCH-HCVARVKKALEE-AGAKVEKVDLNEAVVAGN--KE--DVDKYIKAVEA 60 (73)
T ss_dssp CCEEEEEEEESSBCG-GGHHHHHHHHHH-TTCEEEEECSSEEEEEEE--GG--GHHHHHHHHHH
T ss_pred ccEEEEEEECCCCCH-HHHHHHHHHhcc-CCcEEEEEEccCCEEEEE--EC--CHHHHHHHHHH
Confidence 567788888886544 33344433 344 888888888888877765 44 56677777764
No 40
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=34.20 E-value=42 Score=25.79 Aligned_cols=57 Identities=12% Similarity=-0.015 Sum_probs=42.5
Q ss_pred CCceEEEEEEEeEEcccc--hhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHH
Q 030606 82 PPAKTVRVVVKGRVQGVF--YRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRC 143 (174)
Q Consensus 82 ~~~~r~~i~ItGrVQGVG--FR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L 143 (174)
..-..+.|.|-++ +.| =|.|..++|.+.| +.|.+.-..+|.-+|- +..+.++.++||
T Consensus 9 ~~F~~v~iyive~--kmG~sRr~fL~~la~~kG--f~v~~~~S~~VTHVV~-E~~s~~~~~~~L 67 (133)
T 2dun_A 9 TRFPGVAIYLVEP--RMGRSRRAFLTGLARSKG--FRVLDACSSEATHVVM-EETSAEEAVSWQ 67 (133)
T ss_dssp CSEEEEEEEECHH--HHCSHHHHHHHHHHHHHT--EEECSSCCTTCCEEEE-SSCCHHHHHHHH
T ss_pred cccCccEEEEecC--CcCHHHHHHHHHHHHhcC--CEeccccCCCceEEEe-cCCCHHHHHHHH
Confidence 3445666777666 556 8999999999999 8898886666877666 335557788888
No 41
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=33.48 E-value=1.4e+02 Score=25.24 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=46.3
Q ss_pred chhHHHHHHHHhcCCeEEEEeCCC-CcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEE
Q 030606 99 FYRNWTIENATQLGLKGWVRNRRD-GSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQ 156 (174)
Q Consensus 99 GFR~fV~rlA~~LgL~G~VrN~~D-GsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Ie 156 (174)
-+|.-...+|.+++++-.+..... -+|-|.+.|....++++++.++.|.-.++|.-|-
T Consensus 81 ~L~~~l~~la~~l~m~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Vi 139 (302)
T 3o1l_A 81 GFREAFTPIAEEFSMDWRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVI 139 (302)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEE
T ss_pred HHHHHHHHHHHHhCCeeeecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEE
Confidence 467777889999999987875433 2688889999999999999999886667776653
No 42
>3cm8_B Peptide from RNA-directed RNA polymerase catalytic subunit; protein-peptide complex, nucleotide-binding, nucleotidyltransferase; 2.90A {Influenza a virus}
Probab=31.20 E-value=14 Score=21.91 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.2
Q ss_pred CCcceeeecccccc
Q 030606 6 PQPTLRFLTSGISK 19 (174)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (174)
-||+|-||++++.+
T Consensus 8 inp~f~FL~~~~~~ 21 (30)
T 3cm8_B 8 VNPTLLFLKVPAQN 21 (30)
T ss_pred cCccEEEEcChhhh
Confidence 48999999999875
No 43
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=30.79 E-value=83 Score=18.40 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=36.0
Q ss_pred CceEEEEEEEeEEcccchhHHHHHHHHhc-CCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHh
Q 030606 83 PAKTVRVVVKGRVQGVFYRNWTIENATQL-GLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCC 144 (174)
Q Consensus 83 ~~~r~~i~ItGrVQGVGFR~fV~rlA~~L-gL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~ 144 (174)
.|....+.|.|.-- -+--..+.+.-.++ |+...--|...+.+.+.........+.+.+.+.
T Consensus 3 ~~~~~~~~v~gm~C-~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~ 64 (71)
T 2l3m_A 3 AMEQLTLQVEGMSC-GHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIE 64 (71)
T ss_dssp SEEEEEEEEECCCS-HHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHH
T ss_pred CcEEEEEEECCccC-HHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH
Confidence 35566777766433 23333344444444 777777889999888876643333455555554
No 44
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=30.65 E-value=1.6e+02 Score=24.64 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=46.9
Q ss_pred cchhHHHHHHHHhcCCeEEEEeCCC-CcEEEEEEcCHHhHHHHHHHHhcCCCCeEEEEEE
Q 030606 98 VFYRNWTIENATQLGLKGWVRNRRD-GSVEALFSGNPDSVKEMEQRCCHGPSDAVVTGLQ 156 (174)
Q Consensus 98 VGFR~fV~rlA~~LgL~G~VrN~~D-GsVEI~aeG~ee~Ie~Fi~~L~~gPp~A~V~~Ie 156 (174)
--+|.-...+|.+++++-.+..... -+|-|.+.|....++++++.++.|.-.++|.-|-
T Consensus 70 ~~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Vi 129 (292)
T 3lou_A 70 DALRREFEPIAERFRMQWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIV 129 (292)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHhcCcEEEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEEE
Confidence 3577788899999999977775543 2688899999999999999999886667776653
No 45
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=30.49 E-value=5.9 Score=31.95 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=31.0
Q ss_pred EEcccchhHHH--HHHHHhcCCe---EE----EEeCCCC-c--------EEEEEEcC-HHhHHHHHHHHhc
Q 030606 94 RVQGVFYRNWT--IENATQLGLK---GW----VRNRRDG-S--------VEALFSGN-PDSVKEMEQRCCH 145 (174)
Q Consensus 94 rVQGVGFR~fV--~rlA~~LgL~---G~----VrN~~DG-s--------VEI~aeG~-ee~Ie~Fi~~L~~ 145 (174)
+..|||||..+ ......+.|+ || ....++| + =+|.++|. .+.+-+|.+.+++
T Consensus 92 ~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vgq~AA~Irq 162 (190)
T 3iz5_F 92 RFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQ 162 (190)
T ss_dssp EEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 46799999654 2223334442 33 1234555 1 15888885 4778888887764
No 46
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=26.66 E-value=17 Score=29.86 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=30.9
Q ss_pred EEcccchhHHHHHHH--HhcCCeEEEE-eCCCC-------cEEEEEEcC-HHhHHHHHHHHhc
Q 030606 94 RVQGVFYRNWTIENA--TQLGLKGWVR-NRRDG-------SVEALFSGN-PDSVKEMEQRCCH 145 (174)
Q Consensus 94 rVQGVGFR~fV~rlA--~~LgL~G~Vr-N~~DG-------sVEI~aeG~-ee~Ie~Fi~~L~~ 145 (174)
++.|||||..+...- ..||.+--|. ..++| .-+|.++|. .+.+-+|.+.+++
T Consensus 115 elvGvGYra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDKq~VGq~AA~IR~ 177 (212)
T 1nkw_E 115 ELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRK 177 (212)
T ss_pred EEeeeeeEEEcCCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHHhc
Confidence 577899998754311 1234332222 33444 125777775 5778899998875
No 47
>1uv7_A General secretion pathway protein M; transport; HET: MSE; 1.7A {Vibrio cholerae} SCOP: d.67.4.1
Probab=25.67 E-value=1.4e+02 Score=21.63 Aligned_cols=65 Identities=8% Similarity=0.010 Sum_probs=42.4
Q ss_pred ccchhHHHHHHHHhcCCeEEEEeCCCCcEEEEEEcCHHhHHHHHHHHhc--CCCCeEEEEEEEEEcCCC
Q 030606 97 GVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGNPDSVKEMEQRCCH--GPSDAVVTGLQVFPSNDD 163 (174)
Q Consensus 97 GVGFR~fV~rlA~~LgL~G~VrN~~DGsVEI~aeG~ee~Ie~Fi~~L~~--gPp~A~V~~Iei~~~e~~ 163 (174)
+..-...|.+-|.+.||+-. +-.++|. .+.|+=++-..++++.||.. .--...|+++++...+..
T Consensus 22 ~~~L~~~v~~Sa~~~gL~i~-R~qp~g~-~vqV~l~~v~F~~L~~WL~~L~~~~Gv~v~~l~l~~~~~~ 88 (110)
T 1uv7_A 22 DQPLNQVITNSTRQFNIELI-RVQPRGE-MMQVWIQPLPFSQLVSWIAYLQERQGVSVDAIDIDRGKVN 88 (110)
T ss_dssp -CCHHHHHHHHHHHHTCCEE-EEEECSS-EEEEEECCBCHHHHHHHHHHHHHHSCCEEEEEEEEEC---
T ss_pred CccHHHHHHHHHHHCCCeEE-EecCCCC-EEEEEECCCCHHHHHHHHHHHHHhcCceEEEEEEeecCCC
Confidence 56778899999999999753 4444554 56666667677788888752 123457888887775433
No 48
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=25.22 E-value=54 Score=22.50 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.5
Q ss_pred cCCeEEEEeCCCCcEEEEEEcC
Q 030606 111 LGLKGWVRNRRDGSVEALFSGN 132 (174)
Q Consensus 111 LgL~G~VrN~~DGsVEI~aeG~ 132 (174)
++..|.|+-..||.+-++.||-
T Consensus 18 y~y~G~VQRvsdgkaaVLFEGG 39 (66)
T 2jz2_A 18 YRFEGLVQRVSDGKAAVLFENG 39 (66)
T ss_dssp BTCEEEEEEEETTEEEEEEESS
T ss_pred cceeEEEEEecCCcEEEEecCC
Confidence 4788999999999999999984
No 49
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=24.67 E-value=34 Score=20.30 Aligned_cols=14 Identities=14% Similarity=0.219 Sum_probs=11.1
Q ss_pred HHhHHHHHHHHhcC
Q 030606 133 PDSVKEMEQRCCHG 146 (174)
Q Consensus 133 ee~Ie~Fi~~L~~g 146 (174)
+.+.+.|++||.++
T Consensus 8 ~~aakdFv~WL~ng 21 (31)
T 3c5t_B 8 EEAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 56788999999754
No 50
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=24.37 E-value=11 Score=30.10 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=30.9
Q ss_pred EEcccchhHHHHH--HHHhcCCeEEEE-eCCCC-cE------EEEEEcC-HHhHHHHHHHHhc
Q 030606 94 RVQGVFYRNWTIE--NATQLGLKGWVR-NRRDG-SV------EALFSGN-PDSVKEMEQRCCH 145 (174)
Q Consensus 94 rVQGVGFR~fV~r--lA~~LgL~G~Vr-N~~DG-sV------EI~aeG~-ee~Ie~Fi~~L~~ 145 (174)
++.|||||..+.. +-..||.+--+. ..++| +| +|.++|. .+.+-+|.+.+++
T Consensus 87 ~lvGvGyra~~~G~~l~l~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~Dkq~Vgq~AA~Ir~ 149 (177)
T 1rl6_A 87 ELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRA 149 (177)
T ss_dssp EEESTTCEEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHT
T ss_pred EEEeeceEEEecCCEEEEEecCCccEEEeCCCCcEEEECCCCEEEEEeCCHHHHHHHHHHHhc
Confidence 5679999976432 111334443332 44555 11 4667774 5778999999975
No 51
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=24.15 E-value=50 Score=23.47 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=23.6
Q ss_pred EEeCCCCcEEEEEEcCH-HhHHHHHHHHhcCCCC
Q 030606 117 VRNRRDGSVEALFSGNP-DSVKEMEQRCCHGPSD 149 (174)
Q Consensus 117 VrN~~DGsVEI~aeG~e-e~Ie~Fi~~L~~gPp~ 149 (174)
|-|..+| ..+.|++ ..-+.+.+||++.|..
T Consensus 29 ViN~~dG---trL~Ge~AP~~KdL~dWLrqhP~y 59 (80)
T 2ckc_A 29 VINLEDG---TRLVGEDAPKNKDLVEWLKLHPTY 59 (80)
T ss_dssp EEETTTT---EEECTTSSCBHHHHHHHHHHCTTE
T ss_pred eeecCCC---cccccccCccccCHHHHHHHCCCc
Confidence 7899999 5667864 4568899999998853
No 52
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=24.10 E-value=1.7e+02 Score=20.68 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHHHhcCCeE-------EEEeCCCCcEEEEEEc---CHHhHHHHHHHHh
Q 030606 105 IENATQLGLKG-------WVRNRRDGSVEALFSG---NPDSVKEMEQRCC 144 (174)
Q Consensus 105 ~rlA~~LgL~G-------~VrN~~DGsVEI~aeG---~ee~Ie~Fi~~L~ 144 (174)
..+|..+|+.| .+--.++|.|.-...| .++.++++++.++
T Consensus 96 ~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~ 145 (161)
T 3drn_A 96 KKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALK 145 (161)
T ss_dssp SHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHH
Confidence 36788888877 4555678988777777 3455666666653
No 53
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=23.65 E-value=1.8e+02 Score=19.78 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=29.1
Q ss_pred HHHHHhcCCeEE--EEeCCCCcEEEEEEcC-HHhHHHHHHHHhcC
Q 030606 105 IENATQLGLKGW--VRNRRDGSVEALFSGN-PDSVKEMEQRCCHG 146 (174)
Q Consensus 105 ~rlA~~LgL~G~--VrN~~DGsVEI~aeG~-ee~Ie~Fi~~L~~g 146 (174)
..++.++|+.|+ +.-..+|.+.-...|. .+.++++++.+..+
T Consensus 89 ~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 89 SDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDS 133 (139)
T ss_dssp HHHHHHTTCCEESEEEEEETTEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccEEEEEcCCeEEEEEeCCCHHHHHHHHHHHhcc
Confidence 468899999997 2223788776667775 66777777766544
No 54
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A
Probab=23.08 E-value=77 Score=25.95 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.4
Q ss_pred hcCCeEEEEeCCCCcEEEEEEcC
Q 030606 110 QLGLKGWVRNRRDGSVEALFSGN 132 (174)
Q Consensus 110 ~LgL~G~VrN~~DGsVEI~aeG~ 132 (174)
++.|.||+.+..+|.|+.++.++
T Consensus 180 ~l~V~G~~Ydi~tG~v~~l~~~~ 202 (227)
T 3ucj_A 180 PLSVHGIVYTPGTGLVKELIKPI 202 (227)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEE
T ss_pred ceEEEEEEEECCCCEEEEEeCCC
Confidence 47899999999999998885543
No 55
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=21.80 E-value=1.1e+02 Score=20.71 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHhcCC---eEE---EEeCCCCcEEEEEEc---------CHHhHHHHHHHHh
Q 030606 105 IENATQLGL---KGW---VRNRRDGSVEALFSG---------NPDSVKEMEQRCC 144 (174)
Q Consensus 105 ~rlA~~LgL---~G~---VrN~~DGsVEI~aeG---------~ee~Ie~Fi~~L~ 144 (174)
..+|.++|+ .|+ +--..+|.+.-...| +.+.+++|++.+.
T Consensus 78 ~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 78 LELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp HHHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence 457888999 775 444478877777777 6788888888764
No 56
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=21.42 E-value=1.9e+02 Score=19.25 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=29.2
Q ss_pred HHHHHHhcCCeEE---EEeCCCCcEEEEEEcC--HHhHHHHHHHHhcC
Q 030606 104 TIENATQLGLKGW---VRNRRDGSVEALFSGN--PDSVKEMEQRCCHG 146 (174)
Q Consensus 104 V~rlA~~LgL~G~---VrN~~DGsVEI~aeG~--ee~Ie~Fi~~L~~g 146 (174)
-..++.++|+.|+ +--..+|.+.....|. .+.+.++++.+...
T Consensus 75 ~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 75 GVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES 122 (130)
T ss_dssp HHHHHHHTTCCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred hHHHHHHcCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3567889999985 3333688776667774 56677777776543
Done!