BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030607
         (174 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A9IL50|ASSY_BART1 Argininosuccinate synthase OS=Bartonella tribocorum (strain CIP
           105476 / IBS 506) GN=argG PE=3 SV=1
          Length = 411

 Score = 33.5 bits (75), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 80  EDGTTPLPEGVIFVEQLKEEDAADDSGGESEITRAW--GILVQAKGEGCGPACYLLKTSR 137
           E+   P PE  + +  L  EDA D +   + IT  +  G  V   G+   PA  L + +R
Sbjct: 198 ENPALPAPE-YVHIRTLSPEDAPDQA---TRITLGFKKGDAVSINGKNLSPATLLAELNR 253

Query: 138 AGAGSGLG---LCCTHFCLVKVKSFRET 162
            G  +G+G   L    F  +K + F ET
Sbjct: 254 YGRDNGIGRLDLVENRFVGMKSRGFYET 281


>sp|Q4KM52|BLNK_RAT B-cell linker protein OS=Rattus norvegicus GN=Blnk PE=2 SV=1
          Length = 457

 Score = 33.1 bits (74), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 33  SVVEIVKNLRETPLLVHVYSDSGSGDSTRLK 63
           SVVEI+KN +  PL++ + S + + DSTRLK
Sbjct: 422 SVVEIIKNHQHNPLVL-IDSQNNTKDSTRLK 451


>sp|Q63418|PCDH3_RAT Protocadherin-3 OS=Rattus norvegicus GN=Pcdh3 PE=2 SV=1
          Length = 797

 Score = 32.3 bits (72), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 9   GGGGGGGAGATVSTENVIDK----WMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKT 64
           GGG  G     V   +V D      ++   V + +N  ET + V   SDS SGD+ R+  
Sbjct: 323 GGGLSGKCTVAVQVLDVNDNAPELTIRKLTVLVPENSAETVVAVFSVSDSDSGDNGRMVC 382

Query: 65  EKAVPDDWP-LMKSKWEDGTTPLPEGVIFVEQLKE 98
             ++P++ P L+K  +E+  T + EG +  E   E
Sbjct: 383 --SIPNNIPFLLKPTFENYYTLVTEGPLDRENRAE 415


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.134    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,809,356
Number of Sequences: 539616
Number of extensions: 3265442
Number of successful extensions: 15694
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 15623
Number of HSP's gapped (non-prelim): 56
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)