Query 030607
Match_columns 174
No_of_seqs 19 out of 21
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 16:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03281 Mab-21: Mab-21 protei 68.3 15 0.00033 30.8 5.7 75 21-95 63-162 (292)
2 PHA03214 nuclear protein UL24; 49.7 25 0.00055 31.4 4.1 12 84-95 62-73 (252)
3 PF05813 Orthopox_F7: Orthopox 46.7 5 0.00011 30.0 -0.6 15 144-158 5-19 (82)
4 PHA03215 nuclear protein UL24; 44.5 39 0.00084 30.4 4.5 53 84-170 74-128 (262)
5 PHA03218 nuclear protein UL24; 42.7 39 0.00084 31.0 4.3 56 84-170 113-170 (306)
6 smart00183 NAT_PEP Natriuretic 42.5 12 0.00026 23.1 0.7 19 128-146 6-24 (26)
7 cd01215 Dab Disabled (Dab) Pho 31.8 85 0.0018 25.6 4.2 50 85-140 59-119 (139)
8 PHA02099 hypothetical protein 30.6 29 0.00064 26.2 1.3 15 128-142 64-78 (84)
9 PF01646 Herpes_UL24: Herpes v 28.4 50 0.0011 27.7 2.5 53 84-170 60-114 (179)
10 PTZ00079 NADP-specific glutama 28.3 50 0.0011 31.4 2.7 41 3-43 124-165 (454)
11 PF04413 Glycos_transf_N: 3-De 26.4 21 0.00045 29.1 -0.1 60 32-94 35-103 (186)
12 PF06420 Mgm101p: Mitochondria 23.1 29 0.00063 29.5 0.1 43 85-127 34-91 (171)
13 COG3874 Uncharacterized conser 21.9 85 0.0018 25.9 2.6 19 24-42 96-114 (138)
14 PHA02930 hypothetical protein; 20.9 32 0.00069 25.8 -0.1 12 144-155 5-16 (81)
15 PF05705 DUF829: Eukaryotic pr 20.4 89 0.0019 25.2 2.4 11 45-55 68-78 (240)
No 1
>PF03281 Mab-21: Mab-21 protein
Probab=68.28 E-value=15 Score=30.83 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=49.2
Q ss_pred eehhhHHHHHHHHHHHHHhcCCCCc--cEEEeeccCCCCCeeEEeecCC-----------C--CCCchhHHhhhcCCC--
Q 030607 21 STENVIDKWMKDSVVEIVKNLRETP--LLVHVYSDSGSGDSTRLKTEKA-----------V--PDDWPLMKSKWEDGT-- 83 (174)
Q Consensus 21 ~~~e~~~~Wm~eSV~EIVKni~EAP--fL~~Vf~~~g~g~s~t~k~~~a-----------v--~e~Wp~I~e~w~~g~-- 83 (174)
-...||-.||++-|.+.+++++... ...........|+..|+.++.. + |..||..+..|-+..
T Consensus 63 Ls~~kv~~~f~~lv~~ai~~~~~~~~~~~~~~~~~~~~g~a~tl~v~~~~~~i~vdlVPa~~~~~~WP~~a~~~~~~~~~ 142 (292)
T PF03281_consen 63 LSPSKVLSWFRKLVQKAINKCSHSSKRGYVSVISLKPGGPAVTLIVESGGRRISVDLVPAFEFPGGWPRSAQEWLRRFNG 142 (292)
T ss_pred eCHHHHHHHHHHHHHHHHHHhhccccCCccceeeccCCCceEEEEEecCCceEEEEEEEEEEEcCCCCcccccccccccC
Confidence 3467999999999999999998655 2222222222345555555533 1 678888887776542
Q ss_pred --------CCCCCeEEEEEe
Q 030607 84 --------TPLPEGVIFVEQ 95 (174)
Q Consensus 84 --------~~~PdGVILVe~ 95 (174)
....+|.-||-+
T Consensus 143 Wp~~~~~~~~~~~~~~lvpk 162 (292)
T PF03281_consen 143 WPSPKLIQEIKSFGFHLVPK 162 (292)
T ss_pred CCchhhhhhcccCceEEeee
Confidence 345678888888
No 2
>PHA03214 nuclear protein UL24; Provisional
Probab=49.74 E-value=25 Score=31.35 Aligned_cols=12 Identities=8% Similarity=0.603 Sum_probs=10.4
Q ss_pred CCCCCeEEEEEe
Q 030607 84 TPLPEGVIFVEQ 95 (174)
Q Consensus 84 ~~~PdGVILVe~ 95 (174)
.+.||-||+++.
T Consensus 62 ~RiPDCI~v~~~ 73 (252)
T PHA03214 62 PRIPDCIVLLKS 73 (252)
T ss_pred CCCCCEEEEEec
Confidence 599999999973
No 3
>PF05813 Orthopox_F7: Orthopoxvirus F7 protein; InterPro: IPR008725 The function of the orthopoxvirus F7L proteins are unknown.
Probab=46.69 E-value=5 Score=30.02 Aligned_cols=15 Identities=47% Similarity=1.099 Sum_probs=12.8
Q ss_pred CCceeeeeeeeeeec
Q 030607 144 LGLCCTHFCLVKVKS 158 (174)
Q Consensus 144 ~G~~CThFcL~kv~~ 158 (174)
+|.||-+||.+|-|.
T Consensus 5 mgsccgrfcdaknkn 19 (82)
T PF05813_consen 5 MGSCCGRFCDAKNKN 19 (82)
T ss_pred ehhhhhhhhcccccc
Confidence 588999999998754
No 4
>PHA03215 nuclear protein UL24; Provisional
Probab=44.52 E-value=39 Score=30.42 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=32.5
Q ss_pred CCCCCeEEEEEecCccCCCCCCCCcccceeEEEEEEecccCCCCCeeEE--eeecccCCCCCCCceeeeeeeeeeeccch
Q 030607 84 TPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYL--LKTSRAGAGSGLGLCCTHFCLVKVKSFRE 161 (174)
Q Consensus 84 ~~~PdGVILVe~l~~~~~a~ds~~~~~~t~~WGvVVQgrg~~~~~~CYl--LKT~Rv~S~~g~G~~CThFcL~kv~~f~e 161 (174)
.+.||-||+++--++ .. ....||+ ||||+-.+. .. . ..| +.|+-
T Consensus 74 rRrPDCI~vf~~~~~------~~-------------------~~~vCyIIELKTC~~~s~-~~-T------~sK-~~Qr~ 119 (262)
T PHA03215 74 ARRPDCLCVFEFAND------KT-------------------LGGVCVIIELKTCKFISS-GD-T------ASK-REQRA 119 (262)
T ss_pred CCCCCEEEEEeecCC------CC-------------------cCcEEEEEEeeecccccc-Cc-c------hHH-HHHHH
Confidence 599999999873211 01 1136999 799998542 21 1 123 35777
Q ss_pred hHHHHHhhh
Q 030607 162 TAEAQFKNC 170 (174)
Q Consensus 162 ~~~sQl~n~ 170 (174)
.=..||+.|
T Consensus 120 qGLrQLrDS 128 (262)
T PHA03215 120 TGLSQLRDS 128 (262)
T ss_pred HHHHHHHHH
Confidence 777777654
No 5
>PHA03218 nuclear protein UL24; Provisional
Probab=42.74 E-value=39 Score=31.01 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=32.8
Q ss_pred CCCCCeEEEEEecCccCCCCCCCCcccceeEEEEEEecccCCCCCeeEE--eeecccCCCCCCCceeeeeeeeeeeccch
Q 030607 84 TPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYL--LKTSRAGAGSGLGLCCTHFCLVKVKSFRE 161 (174)
Q Consensus 84 ~~~PdGVILVe~l~~~~~a~ds~~~~~~t~~WGvVVQgrg~~~~~~CYl--LKT~Rv~S~~g~G~~CThFcL~kv~~f~e 161 (174)
.+.||-||+++. +.+.. ...+...||| |||||..+ .+ - ..+| +.|+-
T Consensus 113 rRrPDCI~v~~~-~~~~~---------------------~~~~~~vCyIIELKTC~fs~--n~-~-----T~sK-~~Qr~ 161 (306)
T PHA03218 113 RRRPDCICMFTL-PRGLW---------------------EEGCDGVCVIIELKTCRFSR--NL-K-----TASK-NEQRL 161 (306)
T ss_pred CCCCCEEEEEec-ccccc---------------------ccCCCcEEEEEEeecccccC--CC-C-----cHHH-HHHHH
Confidence 599999999952 11110 0122358999 79999853 22 1 1222 35666
Q ss_pred hHHHHHhhh
Q 030607 162 TAEAQFKNC 170 (174)
Q Consensus 162 ~~~sQl~n~ 170 (174)
.=..||+.|
T Consensus 162 qGLrQLrDS 170 (306)
T PHA03218 162 TGTKQLLDS 170 (306)
T ss_pred HHHHHHHHH
Confidence 666777654
No 6
>smart00183 NAT_PEP Natriuretic peptide. Atrial natriuretic peptides are vertebrate hormones important in the overall control of cardiovascular homeostasis and sodium and water balance in general.
Probab=42.46 E-value=12 Score=23.07 Aligned_cols=19 Identities=47% Similarity=0.798 Sum_probs=17.4
Q ss_pred CeeEEeeecccCCCCCCCc
Q 030607 128 PACYLLKTSRAGAGSGLGL 146 (174)
Q Consensus 128 ~~CYlLKT~Rv~S~~g~G~ 146 (174)
++|+=+|--|.+|-+||||
T Consensus 6 ~gCFG~~~DRIgs~SglGC 24 (26)
T smart00183 6 SGCFGLKLDRIGSMSGLGC 24 (26)
T ss_pred CCcccccccccccccccCc
Confidence 6899999999999899987
No 7
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=31.81 E-value=85 Score=25.55 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=34.7
Q ss_pred CCCCeEEEEEecCccC-----------CCCCCCCcccceeEEEEEEecccCCCCCeeEEeeecccCC
Q 030607 85 PLPEGVIFVEQLKEED-----------AADDSGGESEITRAWGILVQAKGEGCGPACYLLKTSRAGA 140 (174)
Q Consensus 85 ~~PdGVILVe~l~~~~-----------~a~ds~~~~~~t~~WGvVVQgrg~~~~~~CYlLKT~Rv~S 140 (174)
.+||||.++.+-...- -++|.. +-++.|.+.+.-. .| ..||..||.....
T Consensus 59 IS~dGi~v~D~~T~~ll~~~~i~rISfca~D~~----d~r~FsyI~~~~~-~~-H~f~~~k~~k~A~ 119 (139)
T cd01215 59 INIDGIKVLDEKTGAVLHHHPVHRISFIARDST----DARAFGYVYGEPG-GK-HRFYGIKTAQAAD 119 (139)
T ss_pred EccCCEEEEcCCCCcEEEeeceeeEEEEecCCC----CCeEEEEEEEcCC-Cc-EEEEEEEhHHcch
Confidence 5889998886632211 146665 6799999999732 34 5899999987753
No 8
>PHA02099 hypothetical protein
Probab=30.64 E-value=29 Score=26.19 Aligned_cols=15 Identities=27% Similarity=0.782 Sum_probs=12.5
Q ss_pred CeeEEeeecccCCCC
Q 030607 128 PACYLLKTSRAGAGS 142 (174)
Q Consensus 128 ~~CYlLKT~Rv~S~~ 142 (174)
-+||+|.|.+++.++
T Consensus 64 ~~~yi~ntvk~p~ga 78 (84)
T PHA02099 64 HVCYIVNTVKTPTGA 78 (84)
T ss_pred hheeeeeeeecCCCc
Confidence 489999999998643
No 9
>PF01646 Herpes_UL24: Herpes virus protein UL24; InterPro: IPR002580 This entry consists of the human herpes virus protein UL24 and its orthologues, which are universally present in avian, mammalian and reptilian herpes viruses. Though the functions of these proteins are not known, computational analysis suggests that they may belong to the restriction endonuclease-like fold superfamily, which contains a variety of endonucleases, DNA repair enzymes and exonucleases []. Proteins in this entry contain an absolutely conserved PD-(D/E)XK motif thought to be critical for nucleotide-cleaving activity.
Probab=28.42 E-value=50 Score=27.67 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=34.0
Q ss_pred CCCCCeEEEEEecCccCCCCCCCCcccceeEEEEEEecccCCCCCeeEE--eeecccCCCCCCCceeeeeeeeeeeccch
Q 030607 84 TPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYL--LKTSRAGAGSGLGLCCTHFCLVKVKSFRE 161 (174)
Q Consensus 84 ~~~PdGVILVe~l~~~~~a~ds~~~~~~t~~WGvVVQgrg~~~~~~CYl--LKT~Rv~S~~g~G~~CThFcL~kv~~f~e 161 (174)
.+.||-||+++.-+++ +...||+ |||||..+ +.+ -+.|| - .|+-
T Consensus 60 ~R~PDCI~v~~~~~~~--------------------------~~~vCyiiElKTc~~~~-~~~-~t~tk-----~-~Qr~ 105 (179)
T PF01646_consen 60 RRRPDCICVFSSESSG--------------------------GKGVCYIIELKTCRFSA-SNM-NTATK-----R-LQRA 105 (179)
T ss_pred CCCCCEEEEEecCCCC--------------------------cceEEEEEEeehhcccc-cCC-CCHHH-----H-HHHH
Confidence 5999999999765321 2358999 69999975 232 12333 2 4666
Q ss_pred hHHHHHhhh
Q 030607 162 TAEAQFKNC 170 (174)
Q Consensus 162 ~~~sQl~n~ 170 (174)
.=..||+.|
T Consensus 106 qGl~QLrDs 114 (179)
T PF01646_consen 106 QGLRQLRDS 114 (179)
T ss_pred HhHHHHHHH
Confidence 666666643
No 10
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=28.26 E-value=50 Score=31.43 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=31.3
Q ss_pred ccceeecCCCCCCCCcceeehhh-HHHHHHHHHHHHHhcCCC
Q 030607 3 SLGIHYGGGGGGGAGATVSTENV-IDKWMKDSVVEIVKNLRE 43 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~~~e~-~~~Wm~eSV~EIVKni~E 43 (174)
-.|+-||||-||--.+.-..++. +++..+..+.|+.+||..
T Consensus 124 l~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp 165 (454)
T PTZ00079 124 LTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGP 165 (454)
T ss_pred hcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35788998887765554444444 899999999999999864
No 11
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=26.42 E-value=21 Score=29.05 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCC----CccEEEeeccCCCCC-eeEEeecCC---C-CCCchhHHhhhcCCCCCCCCeEEEEE
Q 030607 32 DSVVEIVKNLRE----TPLLVHVYSDSGSGD-STRLKTEKA---V-PDDWPLMKSKWEDGTTPLPEGVIFVE 94 (174)
Q Consensus 32 eSV~EIVKni~E----APfL~~Vf~~~g~g~-s~t~k~~~a---v-~e~Wp~I~e~w~~g~~~~PdGVILVe 94 (174)
.++..++++|++ .++|...++..|... ...+.-.-. . .|.+..+++.+. .-+||.+|++|
T Consensus 35 ~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~---~~~P~~~i~~E 103 (186)
T PF04413_consen 35 NAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLD---HWRPDLLIWVE 103 (186)
T ss_dssp HHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHH---HH--SEEEEES
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHH---HhCCCEEEEEc
Confidence 356777888874 589999887774211 011111001 1 345555666666 36799999986
No 12
>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []. Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome
Probab=23.09 E-value=29 Score=29.48 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=28.8
Q ss_pred CCCCeEEEEEecCc----------cCC--CCCCC---CcccceeEEEEEEecccCCCC
Q 030607 85 PLPEGVIFVEQLKE----------EDA--ADDSG---GESEITRAWGILVQAKGEGCG 127 (174)
Q Consensus 85 ~~PdGVILVe~l~~----------~~~--a~ds~---~~~~~t~~WGvVVQgrg~~~~ 127 (174)
..|||+|.+-++.= +.= +|-++ ...--++=|+++++||.++++
T Consensus 34 IKPDGliYLPEikYRRiLN~AFGpGgWgL~Prg~~~v~~k~v~ReyaLic~Gr~Vs~a 91 (171)
T PF06420_consen 34 IKPDGLIYLPEIKYRRILNKAFGPGGWGLVPRGETIVTGKIVTREYALICHGRLVSQA 91 (171)
T ss_pred ECCCceEEchHHHHHHHHHHhcCCCceeeeecCCceecCceEEEEEEEEEcCEEEEEe
Confidence 68999999876532 110 11111 234678999999999999875
No 13
>COG3874 Uncharacterized conserved protein [Function unknown]
Probab=21.88 E-value=85 Score=25.93 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHhcCC
Q 030607 24 NVIDKWMKDSVVEIVKNLR 42 (174)
Q Consensus 24 e~~~~Wm~eSV~EIVKni~ 42 (174)
..+-+=+-|.|.+|+..|+
T Consensus 96 g~~~~kl~d~vPqiiekIk 114 (138)
T COG3874 96 GHLLEKLVDMVPQIIEKIK 114 (138)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3444455666777776665
No 14
>PHA02930 hypothetical protein; Provisional
Probab=20.86 E-value=32 Score=25.77 Aligned_cols=12 Identities=42% Similarity=1.254 Sum_probs=10.0
Q ss_pred CCceeeeeeeee
Q 030607 144 LGLCCTHFCLVK 155 (174)
Q Consensus 144 ~G~~CThFcL~k 155 (174)
+|-||-+||.+.
T Consensus 5 mgsccgrfcdan 16 (81)
T PHA02930 5 MGSCCGRFCDAN 16 (81)
T ss_pred ecchhhhhhccc
Confidence 477999999983
No 15
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=20.42 E-value=89 Score=25.17 Aligned_cols=11 Identities=45% Similarity=1.090 Sum_probs=9.8
Q ss_pred ccEEEeeccCC
Q 030607 45 PLLVHVYSDSG 55 (174)
Q Consensus 45 PfL~~Vf~~~g 55 (174)
|+|.|+||-.|
T Consensus 68 ~il~H~FSnGG 78 (240)
T PF05705_consen 68 PILFHSFSNGG 78 (240)
T ss_pred CEEEEEEECch
Confidence 99999999874
Done!