Query 030607
Match_columns 174
No_of_seqs 19 out of 21
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 02:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i9o_A MHB8A peptide; beta-hai 88.9 0.12 4.1E-06 32.8 0.8 20 4-23 7-26 (37)
2 1cn3_F Fragment of coat protei 68.3 0.68 2.3E-05 27.9 -0.8 10 25-34 15-24 (29)
3 1jdp_H CNP, C-type natriuretic 42.5 8.2 0.00028 22.9 0.9 20 127-146 3-22 (26)
4 3teo_A Carbon disulfide hydrol 35.6 9.5 0.00032 31.1 0.5 26 23-48 129-165 (204)
5 2i9n_A MHB4A peptide; beta-hai 32.0 17 0.00059 22.3 1.1 13 4-16 7-19 (33)
6 3n57_C Atrial natriuretic fact 21.8 24 0.00081 21.2 0.4 20 128-147 5-24 (28)
7 1yk0_E Atrial natriuretic fact 21.7 19 0.00065 21.3 -0.0 18 130-147 2-19 (26)
8 1q01_A Lebetin 2 isoform alpha 21.3 20 0.0007 22.8 0.1 21 127-147 11-31 (38)
9 1dkc_A PAFP-S, antifungal pept 20.3 31 0.001 22.0 0.7 14 142-155 14-27 (38)
10 3few_X Colicin S4; cell lysis, 19.4 23 0.00079 32.9 0.0 14 5-18 35-48 (505)
No 1
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=88.86 E-value=0.12 Score=32.76 Aligned_cols=20 Identities=50% Similarity=1.014 Sum_probs=15.2
Q ss_pred cceeecCCCCCCCCcceeeh
Q 030607 4 LGIHYGGGGGGGAGATVSTE 23 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~ 23 (174)
-||.|-||||||.|.+.+..
T Consensus 7 ngityeggggggggsaaeay 26 (37)
T 2i9o_A 7 NGITYEGGGGGGGGSAAEAY 26 (37)
T ss_dssp SSCCCCCSCCCCSCSSHHHH
T ss_pred CCEEeecCCCCCcchHHHHH
Confidence 48999888888877776553
No 2
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=68.33 E-value=0.68 Score=27.95 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=5.5
Q ss_pred hHHHHHHHHH
Q 030607 25 VIDKWMKDSV 34 (174)
Q Consensus 25 ~~~~Wm~eSV 34 (174)
.-++||---|
T Consensus 15 vtpdwmlpli 24 (29)
T 1cn3_F 15 VTPDWMLPLI 24 (29)
T ss_dssp CEEGGGHHHH
T ss_pred cCchhhHHHH
Confidence 3456875443
No 3
>1jdp_H CNP, C-type natriuretic peptide; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens}
Probab=42.53 E-value=8.2 Score=22.93 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=17.4
Q ss_pred CCeeEEeeecccCCCCCCCc
Q 030607 127 GPACYLLKTSRAGAGSGLGL 146 (174)
Q Consensus 127 ~~~CYlLKT~Rv~S~~g~G~ 146 (174)
.+.|+=.|-=|+.|-+||||
T Consensus 3 ~~gCFG~riDRIgs~SglGC 22 (26)
T 1jdp_H 3 SKGCFGLKLDRIGSMSGLGC 22 (26)
T ss_pred cccccCceecccccccCCCc
Confidence 36899999999999889886
No 4
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A*
Probab=35.56 E-value=9.5 Score=31.12 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.6
Q ss_pred hhhHHHHH-----------HHHHHHHHhcCCCCccEE
Q 030607 23 ENVIDKWM-----------KDSVVEIVKNLRETPLLV 48 (174)
Q Consensus 23 ~e~~~~Wm-----------~eSV~EIVKni~EAPfL~ 48 (174)
...++.|+ ++||.+-|+.|+.+||+-
T Consensus 129 ~~~~~~Wl~~~~d~~~~~veesV~~~V~~Lr~~Plip 165 (204)
T 3teo_A 129 EEDFIKWFKFYEDLGVKSPDEMALKGVEILRNHPLIP 165 (204)
T ss_dssp HHHHHHHTCCHHHHTCCSHHHHHHHHHHHHHHCTTSC
T ss_pred cccHHhhhccccchhhccHHHHHHHHHHHHHhCCCCC
Confidence 46788996 799999999999999985
No 5
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=31.98 E-value=17 Score=22.32 Aligned_cols=13 Identities=62% Similarity=1.127 Sum_probs=9.4
Q ss_pred cceeecCCCCCCC
Q 030607 4 LGIHYGGGGGGGA 16 (174)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (174)
-||.|-||||..|
T Consensus 7 ngityeggggsaa 19 (33)
T 2i9n_A 7 NGITYEGGGGSAA 19 (33)
T ss_dssp SSCBCCSSCCCST
T ss_pred CCEEeecCCchHH
Confidence 4899988776544
No 6
>3n57_C Atrial natriuretic factor; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.03A {Homo sapiens} PDB: 1anp_A
Probab=21.80 E-value=24 Score=21.24 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=17.8
Q ss_pred CeeEEeeecccCCCCCCCce
Q 030607 128 PACYLLKTSRAGAGSGLGLC 147 (174)
Q Consensus 128 ~~CYlLKT~Rv~S~~g~G~~ 147 (174)
++|+=.|-=|+.+.+||||.
T Consensus 5 ~gCFG~riDRIgs~SglGC~ 24 (28)
T 3n57_C 5 SSCFGGRMDRIGAQSGLGCN 24 (28)
T ss_pred ccccCcccccccccccCCcC
Confidence 68999999999999999975
No 7
>1yk0_E Atrial natriuretic factor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.40A {Homo sapiens} PDB: 1t34_H*
Probab=21.66 E-value=19 Score=21.34 Aligned_cols=18 Identities=44% Similarity=0.711 Sum_probs=14.3
Q ss_pred eEEeeecccCCCCCCCce
Q 030607 130 CYLLKTSRAGAGSGLGLC 147 (174)
Q Consensus 130 CYlLKT~Rv~S~~g~G~~ 147 (174)
|+=.|-=|+.|.+||||.
T Consensus 2 CFG~riDRIgs~SglGC~ 19 (26)
T 1yk0_E 2 CFGGRMDRIGAQSGLGCN 19 (26)
T ss_dssp TTCSCCCCCSSSCCSCCC
T ss_pred CcCccccccccccCCCCC
Confidence 566677899998999874
No 8
>1q01_A Lebetin 2 isoform alpha; beta-bulged hairpain, blood clotting; NMR {Macrovipera lebetina}
Probab=21.33 E-value=20 Score=22.84 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=18.2
Q ss_pred CCeeEEeeecccCCCCCCCce
Q 030607 127 GPACYLLKTSRAGAGSGLGLC 147 (174)
Q Consensus 127 ~~~CYlLKT~Rv~S~~g~G~~ 147 (174)
.++|+=.|-=|+.|.|||||.
T Consensus 11 ~sgCFG~riDRIGs~SglGCn 31 (38)
T 1q01_A 11 PNGCFGHKIDRIGSHSGLGCN 31 (38)
T ss_dssp SSSSSCCTTSCCCSSCCCCCS
T ss_pred CCCccccccccccccccCCCC
Confidence 478999999999998999873
No 9
>1dkc_A PAFP-S, antifungal peptide; three-strands beta sheet, antifungal protein; NMR {Phytolacca americana} SCOP: g.3.4.2
Probab=20.27 E-value=31 Score=21.97 Aligned_cols=14 Identities=29% Similarity=1.025 Sum_probs=11.4
Q ss_pred CCCCceeeeeeeee
Q 030607 142 SGLGLCCTHFCLVK 155 (174)
Q Consensus 142 ~g~G~~CThFcL~k 155 (174)
-++|.||.-||+--
T Consensus 14 gs~g~CcSGfC~q~ 27 (38)
T 1dkc_A 14 AGPPYCCSSYCFQI 27 (38)
T ss_dssp SCCCCCSSSEEEEE
T ss_pred CCCcccccceeEec
Confidence 36799999999854
No 10
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=19.41 E-value=23 Score=32.89 Aligned_cols=14 Identities=57% Similarity=1.436 Sum_probs=0.0
Q ss_pred ceeecCCCCCCCCc
Q 030607 5 GIHYGGGGGGGAGA 18 (174)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (174)
|||+|||.|-|.|+
T Consensus 35 g~hwgggsg~gn~g 48 (505)
T 3few_X 35 GVHWGGGSGSGNGG 48 (505)
T ss_dssp --------------
T ss_pred CCccCCCCCCCCCC
Done!