Query 030607
Match_columns 174
No_of_seqs 19 out of 21
Neff 3.1
Searched_HMMs 13730
Date Tue Mar 26 02:41:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030607.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030607hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6qa1 a.159.1.1 (A:297-368) 47.4 0.9 6.6E-05 30.6 -1.6 34 19-52 5-39 (72)
2 d2fhqa1 b.45.1.1 (A:3-137) Put 31.2 8.2 0.00059 26.0 1.3 56 36-91 54-114 (135)
3 d2hq7a1 b.45.1.1 (A:2-142) Hyp 27.9 6.2 0.00045 26.9 0.1 57 36-92 55-118 (141)
4 d1z1za1 d.323.1.1 (A:2-130) Mi 22.5 23 0.0017 25.7 2.4 22 21-42 71-92 (129)
5 d2i02a1 b.45.1.1 (A:5-147) Gen 16.6 16 0.0012 24.4 0.4 62 35-98 56-124 (143)
6 d1mmca_ g.3.1.2 (A:) Antimicro 16.6 17 0.0012 20.5 0.4 7 145-151 12-18 (30)
7 d1qq5a_ c.108.1.1 (A:) L-2-Hal 16.0 23 0.0016 24.1 1.0 52 33-94 120-171 (245)
8 d1ok7a1 d.131.1.1 (A:1-122) DN 15.6 24 0.0018 23.5 1.1 44 33-77 74-121 (122)
9 d1ig8a2 c.55.1.3 (A:225-486) H 15.6 23 0.0017 27.3 1.1 16 123-139 9-24 (262)
10 d1sr9a1 a.5.7.1 (A:437-491) 2- 13.1 35 0.0026 21.0 1.3 19 25-43 12-30 (55)
No 1
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.38 E-value=0.9 Score=30.62 Aligned_cols=34 Identities=41% Similarity=0.571 Sum_probs=25.7
Q ss_pred ceeehhhHHHHHHHHHHHHHhcCCC-CccEEEeec
Q 030607 19 TVSTENVIDKWMKDSVVEIVKNLRE-TPLLVHVYS 52 (174)
Q Consensus 19 ~v~~~e~~~~Wm~eSV~EIVKni~E-APfL~~Vf~ 52 (174)
||..+..+|.-++.-|.||++.-++ .|.|.|||.
T Consensus 5 Av~kE~eLd~~Le~~v~eii~~~~~~~~dl~~Vm~ 39 (72)
T d1a6qa1 5 AVKKEAELDKYLECRVEEIIKKQGEGVPDLVHVMR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC----CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCchHHHHHH
Confidence 5677889999999999999998775 488888874
No 2
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=31.23 E-value=8.2 Score=25.99 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=36.1
Q ss_pred HHHhcCCCCccEEEeeccCCCCCee--EEeecCC--C-CCCchhHHhhhcCCCCCCCCeEE
Q 030607 36 EIVKNLRETPLLVHVYSDSGSGDST--RLKTEKA--V-PDDWPLMKSKWEDGTTPLPEGVI 91 (174)
Q Consensus 36 EIVKni~EAPfL~~Vf~~~g~g~s~--t~k~~~a--v-~e~Wp~I~e~w~~g~~~~PdGVI 91 (174)
.-++||+.-|=....|.++++.-+. +.++..+ . .+.|.+..+.|-++....||-+|
T Consensus 54 ~k~~~i~~np~vsl~~~~~~~~v~i~G~a~i~~d~~~~~~~w~~~~~~~~~~g~~dp~~~v 114 (135)
T d2fhqa1 54 LKTIDFLSNPKAGLCFQEKGDSVALMGEVEVVTDEKLKQELWQDWFIEHFPGGPTDPGYVL 114 (135)
T ss_dssp HHHHHHHHCCEEEEEEEETTEEEEEEEEEEEECCHHHHHHSCCGGGGGTCTTCTTCTTEEE
T ss_pred hHHHHHhcCCeEEEEEEeCCCEEEEEEEEEEEeCHHHHHHHHHHHHHHhcCCCCCCCCEEE
Confidence 4578888888888888776422111 2222222 2 56898888899887777888543
No 3
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]}
Probab=27.94 E-value=6.2 Score=26.89 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=37.5
Q ss_pred HHHhcCCCCccEEEeeccCCCCCeeE----EeecCC--C-CCCchhHHhhhcCCCCCCCCeEEE
Q 030607 36 EIVKNLRETPLLVHVYSDSGSGDSTR----LKTEKA--V-PDDWPLMKSKWEDGTTPLPEGVIF 92 (174)
Q Consensus 36 EIVKni~EAPfL~~Vf~~~g~g~s~t----~k~~~a--v-~e~Wp~I~e~w~~g~~~~PdGVIL 92 (174)
.-++||+..|-....|...+.....+ ..+..+ . .+.|.+..+.|-+++...||-++|
T Consensus 55 ~K~~~l~~np~vsl~~~~~~~~~~v~i~G~a~i~~d~~~~~~~w~~~~~~~~p~g~~dp~~~ll 118 (141)
T d2hq7a1 55 RMVERLKKNNKICLYFVDDNKFAGLMLVGTIEILHDRASKEMLWTDGCEIYYPLGIDDPDYTAL 118 (141)
T ss_dssp HHHHHHHHCCEEEEEEECSSSSEEEEEEEEEEEECCHHHHHHHCCTTHHHHCTTGGGCTTEEEE
T ss_pred hHHHHHHhCCccEEEEecCCCceEEEEEEEEEEEcCHHHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 45789999998888877664332222 222222 1 567888888888777788886654
No 4
>d1z1za1 d.323.1.1 (A:2-130) Minor tail protein gpU {Bacteriophage lambda [TaxId: 10710]}
Probab=22.51 E-value=23 Score=25.73 Aligned_cols=22 Identities=14% Similarity=0.581 Sum_probs=18.5
Q ss_pred eehhhHHHHHHHHHHHHHhcCC
Q 030607 21 STENVIDKWMKDSVVEIVKNLR 42 (174)
Q Consensus 21 ~~~e~~~~Wm~eSV~EIVKni~ 42 (174)
.++..||.||++-|.++++.+.
T Consensus 71 ~~dseLD~~~E~kI~~~~~~~~ 92 (129)
T d1z1za1 71 VPDSELDAWMESRIYPVMSDIP 92 (129)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCH
T ss_pred CChHHHHHHHHHHHHHHHHhch
Confidence 4588999999999999987743
No 5
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]}
Probab=16.65 E-value=16 Score=24.45 Aligned_cols=62 Identities=10% Similarity=0.140 Sum_probs=38.5
Q ss_pred HHHHhcCCCCccEEEeeccCCCCCeeEE----eecCCC---CCCchhHHhhhcCCCCCCCCeEEEEEecCc
Q 030607 35 VEIVKNLRETPLLVHVYSDSGSGDSTRL----KTEKAV---PDDWPLMKSKWEDGTTPLPEGVIFVEQLKE 98 (174)
Q Consensus 35 ~EIVKni~EAPfL~~Vf~~~g~g~s~t~----k~~~av---~e~Wp~I~e~w~~g~~~~PdGVILVe~l~~ 98 (174)
..-++||+.-|-...+|.+.+.....++ .+..+- .+.|.+..+.|-++....|+-++| ++.|
T Consensus 56 s~K~~~l~~np~vsl~~~~~~~~~~v~i~G~A~iv~d~~~~~~~w~~~~~~~~~~g~~~p~~~li--ri~p 124 (143)
T d2i02a1 56 SHKVTEIEHHEQVNVSFSSPEQQRYVSISGTSQLVKDRNKMRELWKPELQTWFPKGLDEPDIALL--KVNI 124 (143)
T ss_dssp SHHHHHHHHCCEEEEEEEETTTTEEEEEEEEEEEECCHHHHHHHCCGGGGGTCTTGGGCTTEEEE--EEEE
T ss_pred chhhhhhccCceEEEEEEeCCCCeEEEEEEEEEEEcCHHHHHHHHHHHHHHhccCCCCCCCEEEE--EEEe
Confidence 3567899989998888877633322222 222221 468888888887766677775443 4444
No 6
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=16.64 E-value=17 Score=20.50 Aligned_cols=7 Identities=57% Similarity=2.000 Sum_probs=5.1
Q ss_pred Cceeeee
Q 030607 145 GLCCTHF 151 (174)
Q Consensus 145 G~~CThF 151 (174)
|+||.+|
T Consensus 12 gmccsqf 18 (30)
T d1mmca_ 12 GMCCSQF 18 (30)
T ss_dssp TCEECTT
T ss_pred cchhhhc
Confidence 5788776
No 7
>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}
Probab=16.02 E-value=23 Score=24.12 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCCccEEEeeccCCCCCeeEEeecCCCCCCchhHHhhhcCCCCCCCCeEEEEE
Q 030607 33 SVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTTPLPEGVIFVE 94 (174)
Q Consensus 33 SV~EIVKni~EAPfL~~Vf~~~g~g~s~t~k~~~av~e~Wp~I~e~w~~g~~~~PdGVILVe 94 (174)
.+..+.+++.-..+...+|++.. ....|.-|+.+..+.++.+ -.|+-+|+|.
T Consensus 120 ~~~~~~~~~~~~~~fd~v~~s~~------~~~~KP~p~~f~~a~~~lg----~~p~e~l~Vg 171 (245)
T d1qq5a_ 120 MLQALVANAGLTDSFDAVISVDA------KRVFKPHPDSYALVEEVLG----VTPAEVLFVS 171 (245)
T ss_dssp HHHHHHHHTTCGGGCSEEEEGGG------GTCCTTSHHHHHHHHHHHC----CCGGGEEEEE
T ss_pred HHHHHHhhccccccccccccccc------ccccCccHHHHHHHHHHhC----CChhhEEEEe
Confidence 45667777776677777776652 1233555778888999988 6899999997
No 8
>d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=15.60 E-value=24 Score=23.52 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCCccEEEeeccCC----CCCeeEEeecCCCCCCchhHHh
Q 030607 33 SVVEIVKNLRETPLLVHVYSDSG----SGDSTRLKTEKAVPDDWPLMKS 77 (174)
Q Consensus 33 SV~EIVKni~EAPfL~~Vf~~~g----~g~s~t~k~~~av~e~Wp~I~e 77 (174)
-+.||||.|.+.+.+..-.++.. .|. .+.+++.--+++||.|-|
T Consensus 74 ~l~divr~lp~~~~i~~~~~~~~l~i~~~~-~~f~l~~~~~~~fP~ipe 121 (122)
T d1ok7a1 74 KFFDICRGLPEGAEIAVQLEGERMLVRSGR-SRFSLSTLPAADFPNLDD 121 (122)
T ss_dssp HHHHHHHHSCTTCEEEEEEETTEEEEEETT-EEEEEECBCGGGSCCCCC
T ss_pred HHHHHHHhCCCCCcEEEEecCCEEEEEECc-eEEEEccCCHHHCCCCCC
Confidence 46899999987765443333320 122 233444444888988743
No 9
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}
Probab=15.59 E-value=23 Score=27.31 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=12.7
Q ss_pred cCCCCCeeEEeeecccC
Q 030607 123 GEGCGPACYLLKTSRAG 139 (174)
Q Consensus 123 g~~~~~~CYlLKT~Rv~ 139 (174)
|-.| |+||+.|+..+.
T Consensus 9 GTG~-NacY~e~~~~i~ 24 (262)
T d1ig8a2 9 GTGV-NGAYYDVCSDIE 24 (262)
T ss_dssp SSSE-EEEEEEEGGGCG
T ss_pred eCcE-EEEEEEEhhcCc
Confidence 5566 699999998765
No 10
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.06 E-value=35 Score=21.04 Aligned_cols=19 Identities=5% Similarity=0.317 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHhcCCC
Q 030607 25 VIDKWMKDSVVEIVKNLRE 43 (174)
Q Consensus 25 ~~~~Wm~eSV~EIVKni~E 43 (174)
.|++||+.....+|+++-|
T Consensus 12 ~LPr~mq~efs~vVQ~~ad 30 (55)
T d1sr9a1 12 SLPRRLQIEFSQVIQKIAE 30 (55)
T ss_dssp CCCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5789999999999998865
Done!