BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030608
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GRW|H Chain H, Fgfr3 In Complex With A Fab
Length = 235
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 122 GTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLPEWKGHEWKYKKIPT 169
G +V+ + RL+C + T STG+ ++Q P KG EW + PT
Sbjct: 8 GGGLVQPGGSLRLSCAASGFTFTSTGISWVRQAPG-KGLEWVGRIYPT 54
>pdb|4EUB|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUB|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUC|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
pdb|4EUC|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
Length = 514
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 142 TPDSTGLVVIQQLPEWKGHEWKYKKIPTSELP 173
PD T + L ++ GHE K ++P S LP
Sbjct: 234 APDETAKAIAGYLLDFFGHEVKQNRLPPSLLP 265
>pdb|4EUD|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
pdb|4EUD|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
Length = 505
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 142 TPDSTGLVVIQQLPEWKGHEWKYKKIPTSELP 173
PD T + L ++ GHE K ++P S LP
Sbjct: 234 APDETAKAIAGYLLDFFGHEVKQNRLPPSLLP 265
>pdb|4EU9|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EU9|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EUA|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
pdb|4EUA|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
Length = 514
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 142 TPDSTGLVVIQQLPEWKGHEWKYKKIPTSELP 173
PD T + L ++ GHE K ++P S LP
Sbjct: 234 APDETAKAIAGYLLDFFGHEVKQNRLPPSLLP 265
>pdb|4EU8|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
pdb|4EU8|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
Length = 514
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 142 TPDSTGLVVIQQLPEWKGHEWKYKKIPTSELP 173
PD T + L ++ GHE K ++P S LP
Sbjct: 234 APDETAKAIAGYLLDFFGHEVKQNRLPPSLLP 265
>pdb|4EU3|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU3|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU4|A Chain A, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU4|B Chain B, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU5|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU5|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU6|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU6|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU7|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
pdb|4EU7|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
Length = 514
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 142 TPDSTGLVVIQQLPEWKGHEWKYKKIPTSELP 173
PD T + L ++ GHE K ++P S LP
Sbjct: 234 APDETAKAIAGYLLDFFGHEVKQNRLPPSLLP 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,549,081
Number of Sequences: 62578
Number of extensions: 218655
Number of successful extensions: 354
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)