BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030608
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q821Q3|NQRF_CHLCV Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydophila caviae (strain GPIC) GN=nqrF PE=3 SV=1
Length = 431
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 27/90 (30%)
Query: 71 HSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPK 130
H+ L D +T G+ L +L+S I + P C G TC C V+ K
Sbjct: 39 HACKLKINDDDSLTKTVDSGRTLLSSLLDSGIPIPSP-------CGGKATCKQCKVKIVK 91
Query: 131 N--------------------WRLACQTTV 140
N WRL+CQT V
Sbjct: 92 NADQPLETDRATFSKQQLEQGWRLSCQTKV 121
>sp|D4AVK1|RTC5_ARTBC Restriction of telomere capping protein 5 OS=Arthroderma benhamiae
(strain ATCC MYA-4681 / CBS 112371) GN=RTC5 PE=3 SV=1
Length = 660
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 9 YRLASYSLPYNFNCTTNSHKSLKFYKRVSFSRSRIRATATISENDSQAN----AAEEPPV 64
Y + S SLPY F+ T + L F K + SR + T ++SE + + PP+
Sbjct: 287 YWVISTSLPYMFDPLTPLFEHLLFSKNLDLSRRKDSGTCSVSEEKQKKTEFCISPSHPPI 346
Query: 65 V 65
+
Sbjct: 347 I 347
>sp|D4DDJ7|RTC5_TRIVH Restriction of telomere capping protein 5 OS=Trichophyton
verrucosum (strain HKI 0517) GN=RTC5 PE=3 SV=1
Length = 660
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 9 YRLASYSLPYNFNCTTNSHKSLKFYKRVSFSRSRIRATATISENDSQANAA----EEPPV 64
Y + S SLPY F+ T + L F K + SR + T ++SE + PPV
Sbjct: 287 YWVISTSLPYMFDPLTPLFEHLLFSKNLDLSRRKDSGTCSVSEEKQTKTESYFSPSHPPV 346
Query: 65 V 65
+
Sbjct: 347 I 347
>sp|Q2K7X0|PURL_RHIEC Phosphoribosylformylglycinamidine synthase 2 OS=Rhizobium etli
(strain CFN 42 / ATCC 51251) GN=purL PE=3 SV=1
Length = 743
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 51 ENDSQANAAEEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYAR 110
E + QA A ++FA V T D+ FR G+++ ++ + D Y R
Sbjct: 325 EKEEQAKAIFVKWGLDFAIVGKT-----TDDLRFRVVHQGEEVANLPIKDLGDQAPEYDR 379
Query: 111 PLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDST 146
P C +V PKN+ A VG+ + +
Sbjct: 380 PWRECGKPAPLPANLVAAPKNYGQALLQLVGSANQS 415
>sp|Q3KKV3|NQRF_CHLTA Na(+)-translocating NADH-quinone reductase subunit F OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=nqrF PE=3 SV=1
Length = 431
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 27/91 (29%)
Query: 70 VHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKP 129
VH L D +T G+ L +L+S I + P C G C C V
Sbjct: 38 VHPCKLKINNDDSLTKTVDSGKTLLSSLLDSGIAIPSP-------CGGKAACKQCKVRIT 90
Query: 130 KN--------------------WRLACQTTV 140
KN WRL+CQT V
Sbjct: 91 KNADEPLETDRSTFSKQQLEQGWRLSCQTKV 121
>sp|Q02PF8|NQRF_PSEAB Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=nqrF PE=3 SV=1
Length = 407
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 27/78 (34%)
Query: 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTC---MVE------------ 127
H T G KL + +N+ L S C GGGTC C +VE
Sbjct: 45 HSLTVPAGGKLLQTLATNNVFLS-------SACGGGGTCAQCKCVVVEGGGEMLPTEESH 97
Query: 128 -----KPKNWRLACQTTV 140
+ WRL+CQT V
Sbjct: 98 FTRRQAKEGWRLSCQTPV 115
>sp|O84745|NQRF_CHLTR Probable Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=nqrF PE=3
SV=1
Length = 431
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 27/91 (29%)
Query: 70 VHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKP 129
VH L D +T G+ L +L+S I + P C G C C V
Sbjct: 38 VHPCKLKINNDDSLTKTVDSGKTLLSSLLDSGIAIPSP-------CGGKAACKQCKVRIT 90
Query: 130 KN--------------------WRLACQTTV 140
KN WRL+CQT V
Sbjct: 91 KNADEPLETDRSTFSKQQLEQGWRLSCQTKV 121
>sp|Q5ZHN5|THAP5_CHICK THAP domain-containing protein 5 OS=Gallus gallus GN=THAP5 PE=2
SV=1
Length = 413
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 7/129 (5%)
Query: 22 CTTNSHKSLKFYKRVSFSRSRIRATATISENDSQANAAEEPPVVNFAFVHSVLLPDGTPD 81
C+T KSL+ K +R A + I +N SQ + + PV+ A V +V D
Sbjct: 147 CSTVLSKSLQVQKLQLENREDFEADSIILDNSSQQHIHQPEPVLMAAAVQNVEATDVHAS 206
Query: 82 IHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVG 141
+ +C ++ S+ D Y + L N G T T +E P + + C V
Sbjct: 207 VEVPVSCTAT----VLQFSDPD-YLNSSLKLKNTLGSITDYT--LENPNSHVVGCSVEVQ 259
Query: 142 TPDSTGLVV 150
++V
Sbjct: 260 PATENAVLV 268
>sp|Q9HZL1|NQRF_PSEAE Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=nqrF PE=3 SV=1
Length = 407
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 27/78 (34%)
Query: 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTC---MVE------------ 127
H T G KL + +N+ L S C GGGTC C +VE
Sbjct: 45 HSLTVPAGGKLLQTLAANNVFLS-------SACGGGGTCAQCKCVVVEGGGEMLPTEESH 97
Query: 128 -----KPKNWRLACQTTV 140
+ WRL+CQT V
Sbjct: 98 FTRRQAKEGWRLSCQTPV 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,480,405
Number of Sequences: 539616
Number of extensions: 2721090
Number of successful extensions: 4652
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4642
Number of HSP's gapped (non-prelim): 18
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)