Query 030608
Match_columns 174
No_of_seqs 189 out of 1094
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 16:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02593 adrenodoxin-like ferr 99.7 1.7E-17 3.6E-22 127.5 9.6 81 65-160 1-107 (117)
2 PTZ00490 Ferredoxin superfamil 99.7 6.8E-17 1.5E-21 129.0 9.8 81 63-158 34-140 (143)
3 TIGR02007 fdx_isc ferredoxin, 99.7 2.2E-16 4.7E-21 119.5 9.1 64 85-159 18-105 (110)
4 TIGR02008 fdx_plant ferredoxin 99.6 1.4E-14 3.1E-19 107.0 9.1 71 66-155 4-92 (97)
5 CHL00134 petF ferredoxin; Vali 99.5 7.1E-14 1.5E-18 104.1 8.8 61 83-156 17-95 (99)
6 COG0633 Fdx Ferredoxin [Energy 99.5 9.9E-14 2.1E-18 104.1 7.4 57 84-153 16-95 (102)
7 PTZ00038 ferredoxin; Provision 99.5 1.5E-13 3.2E-18 114.6 9.2 69 76-160 103-189 (191)
8 PLN03136 Ferredoxin; Provision 99.4 3.8E-13 8.1E-18 108.0 8.9 74 63-156 53-144 (148)
9 TIGR01941 nqrF NADH:ubiquinone 99.4 3.3E-13 7.1E-18 120.3 9.2 65 76-154 37-121 (405)
10 PRK10713 2Fe-2S ferredoxin Yfa 99.4 4.9E-13 1.1E-17 96.7 8.3 55 86-153 14-84 (84)
11 PRK05464 Na(+)-translocating N 99.4 5.2E-13 1.1E-17 119.2 7.6 58 85-154 48-125 (409)
12 KOG3309 Ferredoxin [Energy pro 99.4 1.1E-12 2.3E-17 106.7 8.7 76 63-153 42-142 (159)
13 COG2871 NqrF Na+-transporting 99.4 2.4E-13 5.1E-18 121.3 5.3 67 85-163 49-136 (410)
14 cd00207 fer2 2Fe-2S iron-sulfu 99.3 4.3E-12 9.2E-17 88.5 7.2 55 85-152 12-84 (84)
15 COG3894 Uncharacterized metal- 99.3 1.3E-12 2.7E-17 122.5 3.6 68 88-167 15-100 (614)
16 PRK05713 hypothetical protein; 99.3 5.9E-12 1.3E-16 108.3 7.3 57 85-154 11-85 (312)
17 PF00111 Fer2: 2Fe-2S iron-sul 99.2 1.7E-11 3.8E-16 85.3 5.7 50 84-141 9-78 (78)
18 PRK11872 antC anthranilate dio 99.2 4E-11 8.7E-16 104.6 9.2 57 85-154 17-93 (340)
19 PRK07609 CDP-6-deoxy-delta-3,4 99.2 2.9E-11 6.3E-16 104.4 7.8 57 85-154 14-90 (339)
20 TIGR02160 PA_CoA_Oxy5 phenylac 99.1 2E-10 4.2E-15 99.7 9.5 70 65-152 263-350 (352)
21 PRK10684 HCP oxidoreductase, N 99.1 1.4E-10 3.1E-15 100.4 8.1 54 85-151 260-331 (332)
22 PRK07569 bidirectional hydroge 98.6 9.2E-08 2E-12 80.4 7.1 57 85-153 13-76 (234)
23 PF13510 Fer2_4: 2Fe-2S iron-s 98.6 1.2E-07 2.5E-12 68.6 5.0 56 85-152 13-78 (82)
24 PRK06259 succinate dehydrogena 98.2 4.4E-06 9.4E-11 76.3 7.7 64 85-155 25-88 (486)
25 PF13085 Fer2_3: 2Fe-2S iron-s 98.1 3.6E-06 7.9E-11 64.8 4.4 72 84-157 22-95 (110)
26 PRK08166 NADH dehydrogenase su 98.0 8.6E-06 1.9E-10 79.3 6.5 57 85-153 11-79 (847)
27 PRK12577 succinate dehydrogena 97.9 7.4E-05 1.6E-09 66.2 9.1 70 85-156 23-101 (329)
28 PLN00129 succinate dehydrogena 97.8 5.5E-05 1.2E-09 66.4 7.6 65 89-156 71-135 (276)
29 PRK12386 fumarate reductase ir 97.8 5.5E-05 1.2E-09 65.4 6.6 71 83-155 22-92 (251)
30 PRK12814 putative NADPH-depend 97.8 5.1E-05 1.1E-09 72.1 6.8 58 85-154 13-77 (652)
31 PRK12576 succinate dehydrogena 97.7 0.00021 4.6E-09 62.2 9.2 71 83-155 27-99 (279)
32 TIGR00384 dhsB succinate dehyd 97.7 4.3E-05 9.3E-10 63.7 4.6 69 85-157 19-88 (220)
33 PRK13552 frdB fumarate reducta 97.7 0.00013 2.8E-09 62.3 6.8 69 85-156 28-96 (239)
34 PRK12385 fumarate reductase ir 97.6 8.2E-05 1.8E-09 63.6 5.4 70 83-156 27-96 (244)
35 PTZ00305 NADH:ubiquinone oxido 97.6 0.00013 2.9E-09 64.9 6.7 72 59-153 63-142 (297)
36 COG0479 FrdB Succinate dehydro 97.6 0.00013 2.7E-09 63.0 6.2 70 86-158 25-94 (234)
37 PRK08640 sdhB succinate dehydr 97.6 0.0002 4.4E-09 61.5 6.6 68 85-156 27-101 (249)
38 PRK07570 succinate dehydrogena 97.5 0.00017 3.7E-09 62.2 5.9 67 87-155 27-103 (250)
39 PRK05950 sdhB succinate dehydr 97.5 0.00031 6.8E-09 59.0 7.3 70 83-155 20-90 (232)
40 PRK07860 NADH dehydrogenase su 97.4 0.00029 6.4E-09 68.7 6.8 57 85-153 14-77 (797)
41 PRK08493 NADH dehydrogenase su 97.4 0.00029 6.2E-09 69.8 6.6 62 85-153 11-72 (819)
42 PRK11433 aldehyde oxidoreducta 97.4 0.00076 1.7E-08 57.7 8.2 82 60-154 45-126 (217)
43 PRK12575 succinate dehydrogena 97.4 0.00059 1.3E-08 58.3 6.9 62 90-156 33-94 (235)
44 PRK09129 NADH dehydrogenase su 97.2 0.00068 1.5E-08 65.5 6.4 57 85-153 11-74 (776)
45 TIGR01973 NuoG NADH-quinone ox 97.2 0.00053 1.2E-08 64.5 5.5 57 85-153 8-72 (603)
46 PRK09130 NADH dehydrogenase su 96.9 0.0019 4E-08 62.5 6.5 56 85-152 11-74 (687)
47 PRK09908 xanthine dehydrogenas 96.7 0.0043 9.3E-08 50.9 6.2 76 66-155 8-83 (159)
48 TIGR03193 4hydroxCoAred 4-hydr 96.3 0.012 2.7E-07 47.7 6.5 65 84-154 12-76 (148)
49 COG1034 NuoG NADH dehydrogenas 96.2 0.012 2.5E-07 57.8 6.6 56 86-153 12-74 (693)
50 COG3383 Uncharacterized anaero 95.5 0.034 7.4E-07 55.7 6.7 51 85-142 15-70 (978)
51 TIGR03198 pucE xanthine dehydr 95.3 0.051 1.1E-06 44.1 6.1 69 77-154 9-78 (151)
52 PRK09800 putative hypoxanthine 94.7 0.049 1.1E-06 55.0 5.2 70 77-154 8-77 (956)
53 PRK00054 dihydroorotate dehydr 94.6 0.026 5.6E-07 47.0 2.7 44 93-138 196-239 (250)
54 cd06219 DHOD_e_trans_like1 FAD 94.6 0.04 8.6E-07 45.9 3.8 46 93-140 195-240 (248)
55 COG2080 CoxS Aerobic-type carb 94.2 0.095 2.1E-06 43.1 5.0 71 77-155 9-79 (156)
56 PRK06222 ferredoxin-NADP(+) re 94.2 0.057 1.2E-06 46.2 3.8 45 93-139 196-240 (281)
57 PRK08345 cytochrome-c3 hydroge 93.9 0.045 9.7E-07 47.0 2.6 45 92-138 226-273 (289)
58 cd06218 DHOD_e_trans FAD/NAD b 93.2 0.093 2E-06 43.8 3.4 45 92-138 194-241 (246)
59 cd06192 DHOD_e_trans_like FAD/ 92.6 0.14 2.9E-06 42.3 3.6 45 93-139 193-239 (243)
60 TIGR03313 Se_sel_red_Mo probab 92.5 0.16 3.6E-06 51.3 4.6 65 84-154 9-73 (951)
61 TIGR02963 xanthine_xdhA xanthi 91.8 0.28 6E-06 45.8 5.0 70 77-154 6-85 (467)
62 TIGR03311 Se_dep_Molyb_1 selen 91.0 0.29 6.3E-06 48.8 4.5 62 86-154 11-73 (848)
63 cd06220 DHOD_e_trans_like2 FAD 90.6 0.24 5.3E-06 40.7 3.0 42 92-137 181-222 (233)
64 PRK12778 putative bifunctional 89.3 0.42 9E-06 46.4 3.9 46 93-140 196-241 (752)
65 TIGR02969 mam_aldehyde_ox alde 88.7 0.58 1.3E-05 49.0 4.7 70 77-154 8-88 (1330)
66 KOG3049 Succinate dehydrogenas 88.2 2 4.3E-05 37.9 7.0 64 89-155 75-138 (288)
67 PRK05802 hypothetical protein; 87.7 0.54 1.2E-05 41.5 3.3 47 93-141 269-318 (320)
68 TIGR01372 soxA sarcosine oxida 86.8 2.2 4.7E-05 43.1 7.3 68 84-157 21-97 (985)
69 PF10418 DHODB_Fe-S_bind: Iron 86.1 0.58 1.3E-05 30.1 1.9 26 112-138 3-30 (40)
70 cd06221 sulfite_reductase_like 85.0 0.5 1.1E-05 39.6 1.6 34 92-127 204-240 (253)
71 PRK12775 putative trifunctiona 84.8 1 2.3E-05 45.7 4.0 46 93-140 196-241 (1006)
72 TIGR02911 sulfite_red_B sulfit 83.7 0.68 1.5E-05 39.2 1.8 39 93-137 205-246 (261)
73 PLN00192 aldehyde oxidase 81.4 2.7 5.8E-05 44.3 5.4 70 77-154 11-91 (1344)
74 PRK08221 anaerobic sulfite red 77.5 1 2.2E-05 38.2 0.9 33 93-127 207-242 (263)
75 KOG2282 NADH-ubiquinone oxidor 76.4 5.9 0.00013 38.9 5.7 62 62-141 30-98 (708)
76 cd01817 RGS12_RBD Ubiquitin do 75.7 4.2 9.1E-05 29.7 3.5 31 72-104 3-37 (73)
77 cd01760 RBD Ubiquitin-like dom 71.9 5.5 0.00012 28.5 3.4 31 72-104 3-37 (72)
78 PRK12779 putative bifunctional 69.9 5.4 0.00012 40.5 4.0 45 93-139 862-910 (944)
79 COG4630 XdhA Xanthine dehydrog 67.5 8 0.00017 36.7 4.3 76 66-154 8-93 (493)
80 smart00455 RBD Raf-like Ras-bi 65.2 9.7 0.00021 26.8 3.4 30 73-104 4-37 (70)
81 PF02196 RBD: Raf-like Ras-bin 61.1 9.3 0.0002 26.9 2.7 30 73-104 5-38 (71)
82 PLN02906 xanthine dehydrogenas 51.5 13 0.00028 39.2 3.0 57 91-154 2-68 (1319)
83 PF03658 Ub-RnfH: RnfH family 45.5 29 0.00062 25.8 3.3 35 64-103 2-36 (84)
84 KOG0430 Xanthine dehydrogenase 40.5 40 0.00088 35.8 4.5 40 82-127 12-51 (1257)
85 PRK01777 hypothetical protein; 36.6 97 0.0021 23.2 5.0 37 64-105 5-41 (95)
86 cd01816 Raf_RBD Ubiquitin doma 35.0 48 0.001 24.4 3.0 25 73-99 4-28 (74)
87 PF14026 DUF4242: Protein of u 30.3 1.2E+02 0.0026 21.6 4.4 40 65-104 32-71 (77)
88 KOG3988 Protein-tyrosine sulfo 27.1 53 0.0011 30.4 2.6 17 88-104 80-96 (378)
89 PF02824 TGS: TGS domain; Int 22.7 1E+02 0.0022 20.7 2.7 28 73-104 3-30 (60)
90 TIGR00364 exsB protein. This p 22.4 69 0.0015 25.7 2.2 28 93-125 164-196 (201)
91 TIGR02899 spore_safA spore coa 20.3 68 0.0015 18.7 1.3 17 88-104 2-18 (44)
92 PF01476 LysM: LysM domain; I 20.2 84 0.0018 18.8 1.8 18 87-104 3-20 (44)
No 1
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.73 E-value=1.7e-17 Score=127.51 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=65.9
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-----------------
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE----------------- 127 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~----------------- 127 (174)
|+|+|+. ++|.. +.+++..|+|||++++++||++ ++.|||.|.||||+|+
T Consensus 1 ~~V~fi~----~~G~~--~~v~~~~G~tLl~a~~~~gi~i-------~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E 67 (117)
T PLN02593 1 ISVTFVD----KDGEE--RTVKAPVGMSLLEAAHENDIEL-------EGACEGSLACSTCHVIVMDEKVYNKLPEPTDEE 67 (117)
T ss_pred CEEEEEc----CCCCE--EEEEECCCCcHHHHHHHcCCCC-------CccCCCcceeCCCEEEEecCccccCCCCCChHH
Confidence 5788887 78864 4457789999999999999998 5579999999999998
Q ss_pred ---------cCCCeEEeecceecCCCCCCCeEEEcCCccccc
Q 030608 128 ---------KPKNWRLACQTTVGTPDSTGLVVIQQLPEWKGH 160 (174)
Q Consensus 128 ---------~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~k~~ 160 (174)
..++||||||+.+.++ .++++|+++++.+..
T Consensus 68 ~~~L~~~~~~~~~sRLaCQ~~v~~~--~~~~~v~ip~~~~~~ 107 (117)
T PLN02593 68 NDMLDLAFGLTETSRLGCQVIAKPE--LDGMRLALPAATRNF 107 (117)
T ss_pred HHHHhcccCCCCCeEecceeEeecC--CCCEEEEcCchhccc
Confidence 2358999999999832 257999987776543
No 2
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.70 E-value=6.8e-17 Score=129.03 Aligned_cols=81 Identities=22% Similarity=0.264 Sum_probs=66.7
Q ss_pred CeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEE--------------
Q 030608 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVE-------------- 127 (174)
Q Consensus 63 p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~-------------- 127 (174)
=.|+|+|.. +||+. +.++++.|++||++++++ ++++ ...|||.|+||||||+
T Consensus 34 g~v~I~~~~----~dG~~--~~v~~~~G~sLLeal~~~~~i~i-------~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~ 100 (143)
T PTZ00490 34 GKVKVCVKK----RDGTH--CDVEVPVGMSLMHALRDVAKLDV-------EGTCNGCMQCATCHVYLSAASFKKLGGPSE 100 (143)
T ss_pred CcEEEEEEc----CCCCE--EEEEECCCccHHHHHHHcCCCCc-------cccCCCCCEeCCCEEEECCCccccCCCCCh
Confidence 368899998 89975 566889999999999995 6888 5579999999999999
Q ss_pred -----------cCCCeEEeecceecCCCCCCCeEEEcCCccc
Q 030608 128 -----------KPKNWRLACQTTVGTPDSTGLVVIQQLPEWK 158 (174)
Q Consensus 128 -----------~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~k 158 (174)
..++||||||+.+.+++ ++++|++++++.
T Consensus 101 ~E~~~L~~~~~~~~gsRLaCQi~v~~~l--dgl~V~vp~~~~ 140 (143)
T PTZ00490 101 EEEDVLAKALDVKETSRLACQVDLTPEM--DGLEVELPSYVT 140 (143)
T ss_pred HHHHHhhccccCCCCcEEeeeEEEecCC--CCEEEEeCcccc
Confidence 24689999999999433 577999766543
No 3
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.68 E-value=2.2e-16 Score=119.45 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=53.7
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE------------------------cCCCeEEeeccee
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE------------------------KPKNWRLACQTTV 140 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~------------------------~~~g~RLACQ~~v 140 (174)
+++..|++||++|+++||++ ++.|||.|.||||+|+ ..++||||||+.+
T Consensus 18 ~~~~~g~tLL~a~~~~gi~i-------~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~~ 90 (110)
T TIGR02007 18 VEAKPGETILDVALDNGIEI-------EHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAVV 90 (110)
T ss_pred EEECCCChHHHHHHHcCCCc-------cccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEEE
Confidence 35689999999999999999 6789999999999888 1356999999998
Q ss_pred cCCCCCCCeEEEcCCcccc
Q 030608 141 GTPDSTGLVVIQQLPEWKG 159 (174)
Q Consensus 141 ~~~~~~gdv~I~~lpe~k~ 159 (174)
.. +|++|+++.....
T Consensus 91 ~~----~dl~v~~~~~~~~ 105 (110)
T TIGR02007 91 AD----EDLVVEIPKYTIN 105 (110)
T ss_pred cC----CCEEEEECchhhh
Confidence 74 5999997755443
No 4
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.57 E-value=1.4e-14 Score=107.03 Aligned_cols=71 Identities=24% Similarity=0.396 Sum_probs=58.2
Q ss_pred EEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE------------------
Q 030608 66 NFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE------------------ 127 (174)
Q Consensus 66 ~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~------------------ 127 (174)
+|+|.. ++|.. ..+++.+|++||++++++||++ ++.|+ .|.||+|+|+
T Consensus 4 ~v~~~~----~~~~~--~~~~~~~g~tLLda~~~~Gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~~~~~l~~~~ 69 (97)
T TIGR02008 4 KVTLVN----PDGGE--ETIECPDDQYILDAAEEAGIDL-------PYSCR-AGACSTCAGKVEEGTVDQSDQSFLDDDQ 69 (97)
T ss_pred EEEEEE----CCCCE--EEEEECCCCcHHHHHHHcCCCC-------CcCCC-CccCCCCceEEEeCcEecCccCCCCHHH
Confidence 455543 56542 3446799999999999999999 77899 8999999998
Q ss_pred cCCCeEEeecceecCCCCCCCeEEEcCC
Q 030608 128 KPKNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 128 ~~~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
+..+|||+||+.+. +|++|++..
T Consensus 70 ~~~g~~LaC~~~~~-----~di~v~~~~ 92 (97)
T TIGR02008 70 MEAGYVLTCVAYPT-----SDCTIETHK 92 (97)
T ss_pred HhCCeEEEeeCEEC-----CCeEEEecc
Confidence 34689999999999 899999654
No 5
>CHL00134 petF ferredoxin; Validated
Probab=99.52 E-value=7.1e-14 Score=104.10 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=53.9
Q ss_pred EEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE------------------cCCCeEEeecceecCCC
Q 030608 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE------------------KPKNWRLACQTTVGTPD 144 (174)
Q Consensus 83 ~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~------------------~~~g~RLACQ~~v~~~~ 144 (174)
+.+++.+|++||++|+++||.+ ++.|+ .|.||+|+|+ ..++|+|+||+++.
T Consensus 17 ~~~~~~~~~tLL~a~~~~Gi~i-------~~~C~-~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~--- 85 (99)
T CHL00134 17 VTIDCPDDVYILDAAEEQGIDL-------PYSCR-AGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCVAYPT--- 85 (99)
T ss_pred EEEEECCCCcHHHHHHHcCCCC-------CcCCC-CccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEeeCEEC---
Confidence 3457799999999999999999 78899 9999999998 34689999999999
Q ss_pred CCCCeEEEcCCc
Q 030608 145 STGLVVIQQLPE 156 (174)
Q Consensus 145 ~~gdv~I~~lpe 156 (174)
+|++|+++.+
T Consensus 86 --~d~~i~~~~~ 95 (99)
T CHL00134 86 --SDCTILTHQE 95 (99)
T ss_pred --CCeEEEeccc
Confidence 8999996543
No 6
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.48 E-value=9.9e-14 Score=104.11 Aligned_cols=57 Identities=33% Similarity=0.559 Sum_probs=47.8
Q ss_pred EEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-----------------------cCCCeEEeeccee
Q 030608 84 FRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE-----------------------KPKNWRLACQTTV 140 (174)
Q Consensus 84 ~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~-----------------------~~~g~RLACQ~~v 140 (174)
...+..|++||++++++||++ +++|+|+ .||||+|+ .+.++||+||+++
T Consensus 16 ~~~~~~g~tiLe~a~~~gi~i-------~~~C~~g-~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~ 87 (102)
T COG0633 16 TEAVNEGETLLEAAERNGIPI-------EYACRGG-ACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRV 87 (102)
T ss_pred EEeccCCcHHHHHHHHCCCcc-------eecCCCC-ccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEE
Confidence 345567999999999999998 7899977 99999999 2346999999999
Q ss_pred cCCCCCCCeEEEc
Q 030608 141 GTPDSTGLVVIQQ 153 (174)
Q Consensus 141 ~~~~~~gdv~I~~ 153 (174)
. +|+.|.+
T Consensus 88 ~-----~d~~i~~ 95 (102)
T COG0633 88 K-----GDLDIEV 95 (102)
T ss_pred C-----CCcceEE
Confidence 9 6777544
No 7
>PTZ00038 ferredoxin; Provisional
Probab=99.48 E-value=1.5e-13 Score=114.63 Aligned_cols=69 Identities=25% Similarity=0.412 Sum_probs=58.2
Q ss_pred CCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE------------------cCCCeEEeec
Q 030608 76 PDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE------------------KPKNWRLACQ 137 (174)
Q Consensus 76 ~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~------------------~~~g~RLACQ 137 (174)
++|.. .+++++|++|||+|+++||++ ++.|+ .|.||+|+|+ ..+||||+||
T Consensus 103 ~~g~~---~~~v~~geTILdAae~aGI~l-------p~sCr-~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCq 171 (191)
T PTZ00038 103 PDGEK---VIECDEDEYILDAAERQGVEL-------PYSCR-GGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCT 171 (191)
T ss_pred CCCcE---EEEeCCCCcHHHHHHHcCCCC-------CcCCC-CccCCCCEeEEeecccccCccccCCHHHhcCCEEEEee
Confidence 56643 346699999999999999999 78899 5999999998 3468999999
Q ss_pred ceecCCCCCCCeEEEcCCccccc
Q 030608 138 TTVGTPDSTGLVVIQQLPEWKGH 160 (174)
Q Consensus 138 ~~v~~~~~~gdv~I~~lpe~k~~ 160 (174)
+++. +|++|+++.+.+.|
T Consensus 172 a~p~-----sDi~Ie~p~e~~~~ 189 (191)
T PTZ00038 172 CYPK-----SDCTIETHKEDELH 189 (191)
T ss_pred CEEC-----CCeEEecCChHHhc
Confidence 9999 89999987665544
No 8
>PLN03136 Ferredoxin; Provisional
Probab=99.45 E-value=3.8e-13 Score=108.05 Aligned_cols=74 Identities=23% Similarity=0.403 Sum_probs=61.4
Q ss_pred CeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE---------------
Q 030608 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE--------------- 127 (174)
Q Consensus 63 p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~--------------- 127 (174)
-..+|+|.. ++|.. .+++.+|++|||+++++||++ ++.|+ .|.||+|+++
T Consensus 53 ~~~~V~l~~----~~~~~---~~~~~~g~tILdAa~~~Gi~l-------p~sCr-~G~CGtC~~~l~~G~V~~~~~~~L~ 117 (148)
T PLN03136 53 ATYKVKFIT----PEGEQ---EVECEEDVYVLDAAEEAGIDL-------PYSCR-AGSCSSCAGKVVSGSIDQSDQSFLD 117 (148)
T ss_pred eeEEEEEec----CCCcE---EEEeCCCCcHHHHHHHcCCCC-------CcCCC-CccCCCCEEEEecCcCccCcccCCC
Confidence 356677765 56643 346699999999999999999 78899 9999999998
Q ss_pred ---cCCCeEEeecceecCCCCCCCeEEEcCCc
Q 030608 128 ---KPKNWRLACQTTVGTPDSTGLVVIQQLPE 156 (174)
Q Consensus 128 ---~~~g~RLACQ~~v~~~~~~gdv~I~~lpe 156 (174)
..++|||+||+++. +|++|++..|
T Consensus 118 ~~e~~~G~~LaC~a~p~-----sD~~Ie~~~e 144 (148)
T PLN03136 118 DEQISEGYVLTCVAYPT-----SDVVIETHKE 144 (148)
T ss_pred HHHhcCCEEEEeEeEEC-----CCcEEecCCh
Confidence 34789999999999 8999997544
No 9
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.44 E-value=3.3e-13 Score=120.33 Aligned_cols=65 Identities=35% Similarity=0.621 Sum_probs=55.1
Q ss_pred CCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE--------------------cCCCeEEe
Q 030608 76 PDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE--------------------KPKNWRLA 135 (174)
Q Consensus 76 ~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~--------------------~~~g~RLA 135 (174)
.+|.. ..+++.+|+|||++++++|+++ ++.|+|.|.||+|+|+ ..+++||+
T Consensus 37 ~~~~~--~~~~~~~g~tlL~a~~~~gi~i-------~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rLa 107 (405)
T TIGR01941 37 NDDEE--KSITVPAGGKLLNTLASNGIFI-------SSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRLS 107 (405)
T ss_pred cCCCc--eEEEECCCChHHHHHHHcCCCC-------cccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEEE
Confidence 45543 3457799999999999999999 7789999999999999 23579999
Q ss_pred ecceecCCCCCCCeEEEcC
Q 030608 136 CQTTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 136 CQ~~v~~~~~~gdv~I~~l 154 (174)
||+.+. +|++|++.
T Consensus 108 Cq~~~~-----~d~~i~~~ 121 (405)
T TIGR01941 108 CQVKVK-----QDMSIEIP 121 (405)
T ss_pred eeCEEC-----CCEEEEEC
Confidence 999999 78999864
No 10
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.44 E-value=4.9e-13 Score=96.67 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=48.0
Q ss_pred ecCC-CchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE---------------cCCCeEEeecceecCCCCCCCe
Q 030608 86 TACG-GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE---------------KPKNWRLACQTTVGTPDSTGLV 149 (174)
Q Consensus 86 ea~~-GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~---------------~~~g~RLACQ~~v~~~~~~gdv 149 (174)
++.+ |++||++++++||++ ++.|+ .|.||+|+++ ..++++|+||+++. +|+
T Consensus 14 ~~~~~~~tlL~a~~~~gi~~-------p~~Cr-~G~Cg~C~~~~~sG~v~~~~~~~~~~~~g~~L~C~~~p~-----sd~ 80 (84)
T PRK10713 14 LCQDEHPSLLAALESHNVAV-------EYQCR-EGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAK-----GDI 80 (84)
T ss_pred EecCCCCcHHHHHHHcCCCC-------CCCCC-CeECCCCEeEEEeCeEecCCCccchhhCCEEEEeeCEEC-----CCE
Confidence 3454 599999999999999 88999 9999999998 34579999999999 899
Q ss_pred EEEc
Q 030608 150 VIQQ 153 (174)
Q Consensus 150 ~I~~ 153 (174)
+|++
T Consensus 81 ~ie~ 84 (84)
T PRK10713 81 EIEM 84 (84)
T ss_pred EEeC
Confidence 8873
No 11
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.40 E-value=5.2e-13 Score=119.19 Aligned_cols=58 Identities=38% Similarity=0.681 Sum_probs=51.9
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE--------------------cCCCeEEeecceecCCC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE--------------------KPKNWRLACQTTVGTPD 144 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~--------------------~~~g~RLACQ~~v~~~~ 144 (174)
+++.+|+|||++++++|+++ ++.|+|.|.||+|+|+ ..++||||||+.+.
T Consensus 48 ~~~~~g~tLL~a~~~~gi~i-------~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~--- 117 (409)
T PRK05464 48 ITVPAGGKLLGALASNGIFL-------SSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVK--- 117 (409)
T ss_pred EEECCCchHHHHHHHcCCCc-------ccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEEC---
Confidence 36689999999999999999 7789999999999998 23589999999999
Q ss_pred CCCCeEEEcC
Q 030608 145 STGLVVIQQL 154 (174)
Q Consensus 145 ~~gdv~I~~l 154 (174)
+|++|++.
T Consensus 118 --~d~~ie~~ 125 (409)
T PRK05464 118 --QDMKIEVP 125 (409)
T ss_pred --CCEEEEEC
Confidence 78999865
No 12
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.40 E-value=1.1e-12 Score=106.68 Aligned_cols=76 Identities=28% Similarity=0.420 Sum_probs=64.3
Q ss_pred CeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE---------------
Q 030608 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE--------------- 127 (174)
Q Consensus 63 p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~--------------- 127 (174)
-.|+|+|+. +||.. .-+....|+|||+++.++||+++ +.|.|.-+|.||||+
T Consensus 42 e~i~Itfv~----~dG~~--~~i~g~vGdtlLd~ah~n~idle-------GACEgslACSTCHViv~~~~yekl~ep~De 108 (159)
T KOG3309|consen 42 EDIKITFVD----PDGEE--IKIKGKVGDTLLDAAHENNLDLE-------GACEGSLACSTCHVIVDEEYYEKLPEPEDE 108 (159)
T ss_pred ceEEEEEEC----CCCCE--EEeeeecchHHHHHHHHcCCCcc-------ccccccccccceEEEEcHHHHhcCCCCcch
Confidence 349999999 99985 34578999999999999999995 479999999999999
Q ss_pred ----------cCCCeEEeecceecCCCCCCCeEEEc
Q 030608 128 ----------KPKNWRLACQTTVGTPDSTGLVVIQQ 153 (174)
Q Consensus 128 ----------~~~g~RLACQ~~v~~~~~~gdv~I~~ 153 (174)
+.+++||.||+...+++. .++|.+
T Consensus 109 E~DmLDlA~gLt~tSRLGCQI~l~keld--G~~v~v 142 (159)
T KOG3309|consen 109 ENDMLDLAFGLTETSRLGCQIVLTKELD--GMRVAV 142 (159)
T ss_pred HHHHHHhhhccccccccceEEEeccccC--CcEEEC
Confidence 457899999999987664 456663
No 13
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.40 E-value=2.4e-13 Score=121.31 Aligned_cols=67 Identities=34% Similarity=0.698 Sum_probs=56.4
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE--------------------cCCCeEEeecceecCCC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE--------------------KPKNWRLACQTTVGTPD 144 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~--------------------~~~g~RLACQ~~v~~~~ 144 (174)
..+++|.+||.++..+||.+ +..|||+|+||.|+|+ ..+||||+||+.|+
T Consensus 49 ~t~~aG~kLL~~L~~~gifi-------~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsCQ~~Vk--- 118 (410)
T COG2871 49 KTVPAGGKLLGALASSGIFI-------SSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSCQVNVK--- 118 (410)
T ss_pred eecCCchhHHHHHHhCCccc-------ccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEEEeccc---
Confidence 35699999999999999999 6679999999999998 45799999999999
Q ss_pred CCCCeEEEcCCc-cccceee
Q 030608 145 STGLVVIQQLPE-WKGHEWK 163 (174)
Q Consensus 145 ~~gdv~I~~lpe-~k~~~~~ 163 (174)
.|+.|+++.+ +...+|.
T Consensus 119 --~dm~levpEe~fgvkkWe 136 (410)
T COG2871 119 --HDMDLEVPEEVFGVKKWE 136 (410)
T ss_pred --ccceeechHHhcCcccee
Confidence 7888886544 2344554
No 14
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.33 E-value=4.3e-12 Score=88.49 Aligned_cols=55 Identities=38% Similarity=0.626 Sum_probs=47.6
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEc------------------CCCeEEeecceecCCCCC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEK------------------PKNWRLACQTTVGTPDST 146 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~------------------~~g~RLACQ~~v~~~~~~ 146 (174)
+++..|++|+++++++|+.+ ++.|++ |.||+|+|+. ..++||+||+.+.
T Consensus 12 ~~~~~g~~ll~al~~~g~~~-------~~~C~~-g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~----- 78 (84)
T cd00207 12 VEVPEGETLLDAAREAGIDI-------PYSCRA-GACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVT----- 78 (84)
T ss_pred EEECCCCcHHHHHHHcCCCc-------ccCCCC-cCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeC-----
Confidence 46689999999999999998 778995 6999999992 2789999999998
Q ss_pred CCeEEE
Q 030608 147 GLVVIQ 152 (174)
Q Consensus 147 gdv~I~ 152 (174)
+|++|+
T Consensus 79 ~~i~v~ 84 (84)
T cd00207 79 DGLVIE 84 (84)
T ss_pred CCcEEC
Confidence 788764
No 15
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.30 E-value=1.3e-12 Score=122.48 Aligned_cols=68 Identities=35% Similarity=0.534 Sum_probs=62.0
Q ss_pred CCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE------------------cCCCeEEeecceecCCCCCCCe
Q 030608 88 CGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE------------------KPKNWRLACQTTVGTPDSTGLV 149 (174)
Q Consensus 88 ~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~------------------~~~g~RLACQ~~v~~~~~~gdv 149 (174)
..|+++|+++++.|+.+. +.|||+|+||+|.|. +..++|||||+.+. ||+
T Consensus 15 ~~g~~il~aar~~gv~i~-------s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v~-----gd~ 82 (614)
T COG3894 15 DEGTTILDAARRLGVYIR-------SVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQVL-----GDL 82 (614)
T ss_pred CCCchHHHHHHhhCceEe-------eecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhhc-----Cce
Confidence 789999999999999994 479999999999997 45699999999999 999
Q ss_pred EEEcCCccccceeeeccC
Q 030608 150 VIQQLPEWKGHEWKYKKI 167 (174)
Q Consensus 150 ~I~~lpe~k~~~~~~~k~ 167 (174)
+|.++|+.+.+..+++|.
T Consensus 83 ~i~ip~es~l~~q~v~k~ 100 (614)
T COG3894 83 VIFIPPESRLERQKVRKD 100 (614)
T ss_pred EEEcCchhhHHHHHHHHH
Confidence 999999999998888664
No 16
>PRK05713 hypothetical protein; Provisional
Probab=99.29 E-value=5.9e-12 Score=108.27 Aligned_cols=57 Identities=28% Similarity=0.655 Sum_probs=50.8
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE------------------cCCCeEEeecceecCCCCC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE------------------KPKNWRLACQTTVGTPDST 146 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~------------------~~~g~RLACQ~~v~~~~~~ 146 (174)
+++.+|+||||+|+++||.+ ++.|+ .|.||+|+|+ ...++||+||+.+.
T Consensus 11 ~~~~~g~tlL~a~~~~gi~~-------~~~C~-~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~----- 77 (312)
T PRK05713 11 WSVPAGSNLLDALNAAGVAV-------PYSCR-AGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVV----- 77 (312)
T ss_pred EEECCCCcHHHHHHHcCCCC-------CcCCC-CcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEEC-----
Confidence 35689999999999999999 77899 7999999998 23579999999999
Q ss_pred CCeEEEcC
Q 030608 147 GLVVIQQL 154 (174)
Q Consensus 147 gdv~I~~l 154 (174)
+|++|+++
T Consensus 78 ~d~~i~~~ 85 (312)
T PRK05713 78 GDLRVEVF 85 (312)
T ss_pred CceEEEec
Confidence 89999964
No 17
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.23 E-value=1.7e-11 Score=85.27 Aligned_cols=50 Identities=40% Similarity=0.699 Sum_probs=41.7
Q ss_pred EEecCCCch-HHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEEc-----------------CCC-eEEeecceec
Q 030608 84 FRTACGGQK-LRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEK-----------------PKN-WRLACQTTVG 141 (174)
Q Consensus 84 ~~ea~~Get-Lldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~~-----------------~~g-~RLACQ~~v~ 141 (174)
.+++.+|++ |+++|+++ |+++ ++.|+|++ ||+|+|+. .++ .||+||++++
T Consensus 9 ~~~~~~~~~~ll~~~~~~~gi~i-------~~~C~~g~-Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~rLaCq~~~t 78 (78)
T PF00111_consen 9 TVEVPPGETLLLDALERAGGIGI-------PYSCGGGG-CGTCRVRVLEGEVQSNETFLEDEELAEGGIRLACQTRVT 78 (78)
T ss_dssp EEEEETTSBBHHHHHHHTTTTTS-------TTSSSSSS-SSTTEEEEEESEEETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred EEEeCCCccHHHHHHHHcCCCCc-------ccCCCCCc-cCCcEEEEeeCcccCCcccCCHHHHHcCCCcCCcEEEeC
Confidence 457789999 99999999 9999 77899877 99999981 134 4899999874
No 18
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.23 E-value=4e-11 Score=104.61 Aligned_cols=57 Identities=30% Similarity=0.390 Sum_probs=50.7
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE--------------------cCCCeEEeecceecCCC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE--------------------KPKNWRLACQTTVGTPD 144 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~--------------------~~~g~RLACQ~~v~~~~ 144 (174)
+++.+|+||||+++++|+.+ ++.|+ .|.||+|+++ ..+++||+||+++.
T Consensus 17 ~~~~~g~tlL~a~~~~g~~~-------p~~C~-~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~--- 85 (340)
T PRK11872 17 FPVGKDELLLDAALRNGINL-------PLDCR-EGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVK--- 85 (340)
T ss_pred EEeCCCCcHHHHHHHcCCCC-------cCCCC-CeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeCEEC---
Confidence 46789999999999999999 78899 8999999998 23589999999999
Q ss_pred CCCCeEEEcC
Q 030608 145 STGLVVIQQL 154 (174)
Q Consensus 145 ~~gdv~I~~l 154 (174)
+|++|++.
T Consensus 86 --~d~~i~~~ 93 (340)
T PRK11872 86 --SDAAFYFD 93 (340)
T ss_pred --CceEEEec
Confidence 89999854
No 19
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.22 E-value=2.9e-11 Score=104.36 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=50.7
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE--------------------cCCCeEEeecceecCCC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE--------------------KPKNWRLACQTTVGTPD 144 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~--------------------~~~g~RLACQ~~v~~~~ 144 (174)
+++.+|+|||++++++||++ ++.|+ .|.||+|+|+ ..+++||+||+++.
T Consensus 14 ~~~~~g~tlL~a~~~~gi~~-------~~~C~-~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~--- 82 (339)
T PRK07609 14 FTAEPDETILDAALRQGIHL-------PYGCK-NGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPL--- 82 (339)
T ss_pred EEeCCCCcHHHHHHHcCCCC-------CCCCC-CeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEEC---
Confidence 35689999999999999999 77898 9999999998 23589999999999
Q ss_pred CCCCeEEEcC
Q 030608 145 STGLVVIQQL 154 (174)
Q Consensus 145 ~~gdv~I~~l 154 (174)
+|++|++.
T Consensus 83 --~d~~i~~~ 90 (339)
T PRK07609 83 --SDLVLEAR 90 (339)
T ss_pred --CCEEEEec
Confidence 89999865
No 20
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.15 E-value=2e-10 Score=99.71 Aligned_cols=70 Identities=24% Similarity=0.448 Sum_probs=54.2
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-----------------
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE----------------- 127 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~----------------- 127 (174)
.+|+|.. +|.. ++.+++.+|++||++|+++||++ ++.|+ .|.||+|+++
T Consensus 263 ~~v~~~~-----~~~~-~~~~~~~~~~slL~~~~~~gi~~-------~~~C~-~G~Cg~C~~~~~~G~v~~~~~~~l~~~ 328 (352)
T TIGR02160 263 SKVTVTL-----DGRS-TETSSLSRDESVLDAALRARPDL-------PFACK-GGVCGTCRAKVLEGKVDMERNYALEPD 328 (352)
T ss_pred eEEEEEE-----CCce-EEEEecCCCCcHHHHHHHcCCCC-------cCCCC-CccCCCCEEEEeccccccccccCCCHH
Confidence 4555543 4432 33456789999999999999999 78999 6999999999
Q ss_pred -cCCCeEEeecceecCCCCCCCeEEE
Q 030608 128 -KPKNWRLACQTTVGTPDSTGLVVIQ 152 (174)
Q Consensus 128 -~~~g~RLACQ~~v~~~~~~gdv~I~ 152 (174)
..++++|+||+++.. .+++|.
T Consensus 329 ~~~~g~~l~C~~~~~~----~~~~~~ 350 (352)
T TIGR02160 329 EVDAGYVLTCQAYPLS----DKLVVD 350 (352)
T ss_pred HHhCCcEEEeeEEECC----CcEEEe
Confidence 236799999999983 347765
No 21
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.14 E-value=1.4e-10 Score=100.36 Aligned_cols=54 Identities=24% Similarity=0.525 Sum_probs=48.1
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE------------------cCCCeEEeecceecCCCCC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE------------------KPKNWRLACQTTVGTPDST 146 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~------------------~~~g~RLACQ~~v~~~~~~ 146 (174)
+++.+|+|||++|+++||++ ++.|+ .|.||+|+++ ..+||+|+||+++.
T Consensus 260 ~~~~~~~~lL~~~~~~gi~~-------~~~C~-~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~----- 326 (332)
T PRK10684 260 FYAPVGTTLLEALESNKVPV-------VAACR-AGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQ----- 326 (332)
T ss_pred EEeCCCChHHHHHHHcCCCc-------cCCCC-CcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeCEEC-----
Confidence 35589999999999999999 77899 9999999998 34689999999999
Q ss_pred CCeEE
Q 030608 147 GLVVI 151 (174)
Q Consensus 147 gdv~I 151 (174)
+|++|
T Consensus 327 ~d~~i 331 (332)
T PRK10684 327 GDLVL 331 (332)
T ss_pred CCeEE
Confidence 78876
No 22
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.62 E-value=9.2e-08 Score=80.36 Aligned_cols=57 Identities=28% Similarity=0.436 Sum_probs=47.5
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCC-----CCceecccEEEcCC--CeEEeecceecCCCCCCCeEEEc
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEKPK--NWRLACQTTVGTPDSTGLVVIQQ 153 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CG-----G~G~CGTC~V~~~~--g~RLACQ~~v~~~~~~gdv~I~~ 153 (174)
+++++|+||+++|+++||.+ ++.|. +.|.|+.|+|+... +.++||++.+. ..++|+.
T Consensus 13 ~~~~~g~til~a~~~~gi~i-------p~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~-----~Gm~v~t 76 (234)
T PRK07569 13 VSAREGETLLEAAREAGIPI-------PTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVA-----EGMVVQT 76 (234)
T ss_pred EEeCCCCHHHHHHHHcCCCC-------CcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCC-----CCCEEEE
Confidence 46699999999999999999 67787 78999999999543 35579999999 5677664
No 23
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.55 E-value=1.2e-07 Score=68.60 Aligned_cols=56 Identities=27% Similarity=0.434 Sum_probs=37.2
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCC---------CceecccEEEcCC-CeEEeecceecCCCCCCCeEEE
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAG---------GGTCGTCMVEKPK-NWRLACQTTVGTPDSTGLVVIQ 152 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG---------~G~CGTC~V~~~~-g~RLACQ~~v~~~~~~gdv~I~ 152 (174)
+++.+|+||+++++++||.+ +..|.. .|.|+.|.|+... ....||++.+. ..++|+
T Consensus 13 v~~~~G~til~al~~~gi~i-------p~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~-----~GM~V~ 78 (82)
T PF13510_consen 13 VEVPPGETILEALLAAGIDI-------PRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVE-----DGMVVE 78 (82)
T ss_dssp EEEEET-BHHHHHHHTT--B--------EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B-------TTEEEE
T ss_pred EEEcCCCHHHHHHHHCCCeE-------EEeeeccCcccccCCccccceEEEEECCCcceEcccCCCc-----CCcEEE
Confidence 35689999999999999998 556664 6999999999443 33799999999 677775
No 24
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.20 E-value=4.4e-06 Score=76.25 Aligned_cols=64 Identities=28% Similarity=0.381 Sum_probs=48.0
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
+++.+|+||+++|++.+......+. ..++|+ .|.||+|.|......+|+||+.+. ++++|+.++
T Consensus 25 v~~~~~~tvl~al~~~~~~~~~~l~-~~~~C~-~g~Cg~C~v~v~G~~~laC~~~~~-----~~~~i~~~~ 88 (486)
T PRK06259 25 VPVKEGMTVLDALEYINKTYDANIA-FRSSCR-AGQCGSCAVTINGEPVLACKTEVE-----DGMIIEPLD 88 (486)
T ss_pred EeCCCCChHHHHHHHhchhcCCCce-ecCCCC-CCCCCCCEEEECCeEecccccCCC-----CCCEEEecC
Confidence 3567999999999964432111111 156898 899999999976667899999999 678998764
No 25
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.11 E-value=3.6e-06 Score=64.83 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=49.7
Q ss_pred EEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCC--CeEEEcCCcc
Q 030608 84 FRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTG--LVVIQQLPEW 157 (174)
Q Consensus 84 ~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~g--dv~I~~lpe~ 157 (174)
.+++.+|.|+|++|..-.-.+....+= -++|+ .|.||+|.+.....-||||.+.+.+..... .++|+.++-.
T Consensus 22 ~v~~~~~~tVLd~L~~Ik~~~D~sLaf-r~sCr-~giCGsCam~ING~~~LAC~t~v~~~~~~~~~~i~IePL~~f 95 (110)
T PF13085_consen 22 EVPVEPGMTVLDALNYIKEEQDPSLAF-RYSCR-SGICGSCAMRINGRPRLACKTQVDDLIEKFGNVITIEPLPNF 95 (110)
T ss_dssp EEEGGSTSBHHHHHHHHHHHT-TT--B---SSS-SSSSSTTEEEETTEEEEGGGSBGGGCTTSETBEEEEEESTTS
T ss_pred EecCCCCCcHHHHHHHHHhccCCCeEE-EecCC-CCCCCCCEEEECCceecceeeEchhccCCCcceEEEEECCCC
Confidence 346688999999996543333222221 47899 999999999987778999999998544332 4888877543
No 26
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.04 E-value=8.6e-06 Score=79.33 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=48.2
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCC-----CCceecccEEEc-------CCCeEEeecceecCCCCCCCeEEE
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEK-------PKNWRLACQTTVGTPDSTGLVVIQ 152 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CG-----G~G~CGTC~V~~-------~~g~RLACQ~~v~~~~~~gdv~I~ 152 (174)
+++.+|+||+++++++||.+ |+.|. +.|.|+.|+|+. ..++++||++.+. ..++|+
T Consensus 11 ~~~~~g~til~a~~~~gi~i-------p~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~-----~gm~v~ 78 (847)
T PRK08166 11 YEVNGADNLLEACLSLGIDI-------PYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPAT-----DGTFIS 78 (847)
T ss_pred EEeCCCCHHHHHHHHcCCCC-------CccccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCC-----CCCEEE
Confidence 35689999999999999999 88896 479999999994 2358899999999 577776
Q ss_pred c
Q 030608 153 Q 153 (174)
Q Consensus 153 ~ 153 (174)
.
T Consensus 79 t 79 (847)
T PRK08166 79 I 79 (847)
T ss_pred e
Confidence 4
No 27
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.89 E-value=7.4e-05 Score=66.21 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=52.7
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCC---------CCCCeEEEcCC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPD---------STGLVVIQQLP 155 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~---------~~gdv~I~~lp 155 (174)
+++.+|+||||+|...++.+.....- ..+|+ .|.||+|.|+.....+|||++.+.+.- ..+.++|+.++
T Consensus 23 v~~~~~~tvL~~l~~i~~~~d~tL~~-~~~c~-~~~Cg~C~v~inG~~~laC~t~v~~~~~~~~~~~~~~~~~i~iePl~ 100 (329)
T PRK12577 23 LEVEPGNTILDCLNRIKWEQDGSLAF-RKNCR-NTICGSCAMRINGRSALACKENVGSELARLSDSNSGAIPEITIAPLG 100 (329)
T ss_pred EECCCCChHHHHHHHhCCcCCCCcEE-cCCCC-CCCCCCCEEEECCeeecCcccchhhhhccccccccCCCCeEEEEECC
Confidence 46789999999999999988422111 24799 689999999977778899999987421 23577888764
Q ss_pred c
Q 030608 156 E 156 (174)
Q Consensus 156 e 156 (174)
-
T Consensus 101 ~ 101 (329)
T PRK12577 101 N 101 (329)
T ss_pred C
Confidence 4
No 28
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.85 E-value=5.5e-05 Score=66.36 Aligned_cols=65 Identities=23% Similarity=0.468 Sum_probs=47.0
Q ss_pred CCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCCc
Q 030608 89 GGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLPE 156 (174)
Q Consensus 89 ~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lpe 156 (174)
.|.|+||+|..-.-..+..++- -++|. .|.||+|.+.....-||||++.+.+. ..+.++|+.++-
T Consensus 71 ~~~tVLd~L~~Ik~~~D~sLsf-r~sCr-~giCGsCam~ING~p~LAC~t~v~~~-~~~~i~iePl~~ 135 (276)
T PLN00129 71 CGPMVLDVLIKIKNEQDPSLTF-RRSCR-EGICGSCAMNIDGKNTLACLTKIDRD-ESGPTTITPLPH 135 (276)
T ss_pred CCchHHHHHHHHHHcCCCCeEE-eccCC-CCCCCCCeeEECCcccccccccHhhc-CCCcEEEEECCC
Confidence 3799999997643333222221 46899 89999999997777899999999743 235678887754
No 29
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.79 E-value=5.5e-05 Score=65.35 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=51.7
Q ss_pred EEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCC
Q 030608 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 83 ~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
..+++.++.+||++|++-+.....+.+- -..|+ .|.||+|.|.....-||||++.+..-...+.++|+-++
T Consensus 22 y~v~~~~~~tvLd~L~~i~~~~d~~l~~-r~~C~-~g~CGsCa~~InG~p~laC~t~~~~~~~~~~itiepl~ 92 (251)
T PRK12386 22 YTVEVNEGEVVLDVIHRLQATQAPDLAV-RWNCK-AGKCGSCSAEINGRPRLMCMTRMSTFDEDETVTVTPMR 92 (251)
T ss_pred EEEeCCCCCCHHHHHHHhccccCCCCcc-cCCCC-CCcCCCCEEEECccEeccHHhHHHHhCCCCeEEEccCC
Confidence 3456789999999999966643332221 46899 99999999998778899999998632222456777654
No 30
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.78 E-value=5.1e-05 Score=72.15 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=47.2
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCC-----CCceecccEEEcCCC--eEEeecceecCCCCCCCeEEEcC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEKPKN--WRLACQTTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CG-----G~G~CGTC~V~~~~g--~RLACQ~~v~~~~~~gdv~I~~l 154 (174)
+++++|+||+++|+++|+.+ +..|. +.|.|+.|.|+.... ..+||++.+. ..|+|+..
T Consensus 13 ~~~~~g~ti~~a~~~~g~~i-------p~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~-----~Gm~v~t~ 77 (652)
T PRK12814 13 VTAAPGTSILEAAASAGITI-------PTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVS-----EGMVIETE 77 (652)
T ss_pred EEeCCcCcHHHHHHHcCCcc-------ccccCCCCCCCccccceeEEEECCCcceecCcCCCCC-----CCCEEEeC
Confidence 36699999999999999998 67787 389999999995433 3569999999 57777653
No 31
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.73 E-value=0.00021 Score=62.25 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=51.5
Q ss_pred EEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCC--CCCCCeEEEcCC
Q 030608 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTP--DSTGLVVIQQLP 155 (174)
Q Consensus 83 ~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~--~~~gdv~I~~lp 155 (174)
..+++.+|+||+++|...+..+.....- ...|+ .|.||.|.|.....-+|||++.+.+- ...+.++|+.++
T Consensus 27 ~~v~~~~~~tvLd~L~~i~~~~d~tl~~-~~~C~-~G~CgsC~v~ING~~~laC~t~v~~~~~~~~~~~tiePl~ 99 (279)
T PRK12576 27 YKVKVDRFTQVTEALRRIKEEQDPTLSY-RASCH-MAVCGSCGMKINGEPRLACKTLVLDVAKKYNSVITIEPMD 99 (279)
T ss_pred EEEecCCCCHHHHHHHHhCCccCCCcee-cCCCC-CCCCCCCEEEECCcEeccccCcHHHhhcCCCCcEEEEECC
Confidence 3457789999999999988765321111 35796 99999999997666789999998742 112457777765
No 32
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.72 E-value=4.3e-05 Score=63.66 Aligned_cols=69 Identities=25% Similarity=0.374 Sum_probs=48.7
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecC-CCCCCCeEEEcCCcc
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGT-PDSTGLVVIQQLPEW 157 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~-~~~~gdv~I~~lpe~ 157 (174)
+++.+|+||+++|++.+..+...+. ....|+ .|.||+|.|+....-+|||++.+.+ .|. -++|+.++..
T Consensus 19 v~~~~~~tvl~~l~~i~~~~~~~l~-~~~~C~-~g~Cg~C~v~vnG~~~laC~t~v~~~g~~--~~~iepl~~~ 88 (220)
T TIGR00384 19 VPADEGMTVLDALNYIKDEQDPSLA-FRRSCR-NGICGSCAMNVNGKPVLACKTKVEDLGQP--VMKIEPLPNL 88 (220)
T ss_pred EeCCCCCcHHHHHHHHHHhcCCCce-eecccC-CCCCCCCeeEECCEEhhhhhChHHHcCCC--cEEEeeCCCC
Confidence 4567999999999987633211111 146797 8999999999766678999999985 221 2677776543
No 33
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.66 E-value=0.00013 Score=62.32 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=50.7
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCCc
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLPE 156 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lpe 156 (174)
+++.+|.|||++|..-.-..+...+= -++|+ .|.||+|.+.....-||||++.+.+- ..+.++|+.++-
T Consensus 28 v~~~~~~tvLdaL~~Ik~~~D~sL~f-r~sCr-~giCGsCam~ING~~~LAC~t~v~~~-~~~~i~iePl~~ 96 (239)
T PRK13552 28 LEETPGMTLFIALNRIREEQDPSLQF-DFVCR-AGICGSCAMVINGRPTLACRTLTSDY-PDGVITLMPLPV 96 (239)
T ss_pred ecCCCCCCHHHHHHHHHhcCCCCeeE-eccCC-CCCCCCceeEECCeEhhhhhccHhhc-CCCcEEEEECCC
Confidence 45678999999997665443332221 47899 99999999997777799999998742 224688887754
No 34
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.65 E-value=8.2e-05 Score=63.57 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=49.0
Q ss_pred EEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCCc
Q 030608 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLPE 156 (174)
Q Consensus 83 ~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lpe 156 (174)
..+++.+|.||+++|...+-.+...++- ...|+ .|.||+|.|......+|||++.+... .+.++|+.++.
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~f-r~~C~-~giCGsC~v~InG~~~laC~t~~~~~--~~~~~iePl~~ 96 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSY-RWSCR-MAICGSCGMMVNNVPKLACKTFLRDY--TGGMKVEALAN 96 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCcee-ccCCC-CCcCCCCcceECccChhhHhhHHHHc--CCCeEEeeCCC
Confidence 3446679999999997654333221110 24799 89999999996666799999999732 24578877654
No 35
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.64 E-value=0.00013 Score=64.90 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=53.9
Q ss_pred CCCCCeeEEEEeeeeeCCCCCeeEEEEec-CCCchHHHHHHHCCCCccCCCCCCCCCCC-----CCceecccEEEcCCC-
Q 030608 59 AEEPPVVNFAFVHSVLLPDGTPDIHFRTA-CGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEKPKN- 131 (174)
Q Consensus 59 ~~~~p~v~~~f~~~v~l~dGt~~v~~~ea-~~GetLldaal~~GI~L~~p~~k~~~~CG-----G~G~CGTC~V~~~~g- 131 (174)
.+-.|.+++++ ||. .+++ ++|+|||++++++||.| |..|- -.|.|..|.|+....
T Consensus 63 ~~~~~~~~I~I-------DGk----~VeV~~~G~TILeAAr~~GI~I-------PtLCy~~~L~p~G~CRlClVEVeG~~ 124 (297)
T PTZ00305 63 AEHKPRAIMFV-------NKR----PVEIIPQEENLLEVLEREGIRV-------PKFCYHPILSVAGNCRMCLVQVDGTQ 124 (297)
T ss_pred hccCCceEEEE-------CCE----EEEecCCCChHHHHHHHcCCCc-------CccccCCCCCCCCccceeEEEECCCc
Confidence 46778888833 453 2366 88999999999999999 66664 358899999995433
Q ss_pred -eEEeecceecCCCCCCCeEEEc
Q 030608 132 -WRLACQTTVGTPDSTGLVVIQQ 153 (174)
Q Consensus 132 -~RLACQ~~v~~~~~~gdv~I~~ 153 (174)
..-||.+.+. ..|+|+.
T Consensus 125 ~lv~AC~tpV~-----eGM~V~T 142 (297)
T PTZ00305 125 NLVVSCATVAL-----PGMSIIT 142 (297)
T ss_pred CcccccCCcCC-----CCCEEEe
Confidence 3459999999 5666653
No 36
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.63 E-value=0.00013 Score=63.00 Aligned_cols=70 Identities=24% Similarity=0.466 Sum_probs=50.0
Q ss_pred ecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCCccc
Q 030608 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLPEWK 158 (174)
Q Consensus 86 ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~k 158 (174)
+..+|.+|||+|+.-.=.++.+..= -.+|. .|.||+|.+.....-||||.+.+.+-.. +.++|+.++-.+
T Consensus 25 ~~~~~~~vLdaL~~Ik~e~d~~Lsf-r~sCR-~gICGSCam~ING~prLAC~t~~~~~~~-~~i~iePL~~fp 94 (234)
T COG0479 25 PYDEGMTVLDALLYIKEEQDPTLSF-RRSCR-EGICGSCAMNINGKPRLACKTLMKDLEE-GVITIEPLPNFP 94 (234)
T ss_pred cCCCCCcHHHHHHHHHHhcCCccch-hhhcc-CCcCCcceeEECCccccchhchhhhccC-CceEEEECCCCC
Confidence 3458999999997654333333221 47999 9999999999777779999999983222 257888776443
No 37
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.56 E-value=0.0002 Score=61.49 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=47.7
Q ss_pred EecCCCchHHHHHHHCCCC---c----cCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCCc
Q 030608 85 RTACGGQKLRDIMLNSNID---L----YGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLPE 156 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~---L----~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lpe 156 (174)
+++.+|.||||+|..-.-. + ..+++ .-++|+ .|.||+|.+.....-||||++.+.+- .+.++|+.++-
T Consensus 27 v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~-fr~sCr-~giCGsCam~ING~p~LAC~t~v~~~--~~~i~iePl~~ 101 (249)
T PRK08640 27 IPYRPNMNVISALMEIRRNPVNAKGEKTTPVV-WDMNCL-EEVCGACSMVINGKPRQACTALIDQL--EQPIRLEPMST 101 (249)
T ss_pred ecCCCCCcHHHHHHHHHhcccccccccCCCee-EecccC-CCCCCcCeeEECCccchhhhChHHHc--CCcEEEEECCC
Confidence 4567899999999754211 1 11111 146899 99999999997777799999999531 35688887753
No 38
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.54 E-value=0.00017 Score=62.22 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=44.6
Q ss_pred cCCCchHHHHHHHCCCCc----cCCCCCCCCCCCCCceecccEEEcCCCe------EEeecceecCCCCCCCeEEEcCC
Q 030608 87 ACGGQKLRDIMLNSNIDL----YGPYARPLSNCAGGGTCGTCMVEKPKNW------RLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 87 a~~GetLldaal~~GI~L----~~p~~k~~~~CGG~G~CGTC~V~~~~g~------RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
+.+|.|+|++|..-.-.+ ..+++ .-++|. .|.||+|.+.....- ||||++.+..-...+.++|+.++
T Consensus 27 ~~~~~tvLd~L~~Ik~~~~~~~~~~l~-fr~sCr-~~iCGsCam~ING~p~~~~~~~LAC~t~~~~~~~~~~i~iePl~ 103 (250)
T PRK07570 27 ISPDMSFLEMLDVLNEQLIEKGEEPVA-FDHDCR-EGICGMCGLVINGRPHGPDRGTTTCQLHMRSFKDGDTITIEPWR 103 (250)
T ss_pred CCCCCcHHHHHHHHHHHhhccCCCCee-Eecccc-CCcCCcceeEECCccCCCCcccchhhhhhhhcCCCCeEEEEECC
Confidence 457999999997432100 01111 157899 999999999955444 89999988643223567777775
No 39
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.53 E-value=0.00031 Score=59.03 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=48.6
Q ss_pred EEEecC-CCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCC
Q 030608 83 HFRTAC-GGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 83 ~~~ea~-~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
..+++. +|+||+++|.+.+-....... ....|+ .|.||+|.|.....-+|||.+.+..- ..+.++|+-+.
T Consensus 20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~-~~~~c~-~g~Cg~C~v~vnG~~~laC~t~~~~~-~~~~~tiepl~ 90 (232)
T PRK05950 20 YEVDVDECGPMVLDALIKIKNEIDPTLT-FRRSCR-EGVCGSDAMNINGKNGLACITPISDL-KKGKIVIRPLP 90 (232)
T ss_pred EEeCCCCCCCHHHHHHHHhCCccCCcce-eeCCCC-CCCCCCCEEEECCcCccchhChHhHc-CCCeEEEEECC
Confidence 344677 899999999998722210000 135795 79999999997666689999998743 23456777664
No 40
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.44 E-value=0.00029 Score=68.74 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=46.3
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCC-----CCceecccEEEcCC--CeEEeecceecCCCCCCCeEEEc
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEKPK--NWRLACQTTVGTPDSTGLVVIQQ 153 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CG-----G~G~CGTC~V~~~~--g~RLACQ~~v~~~~~~gdv~I~~ 153 (174)
+++++|+||+++++.+||.| |+.|. ..|.|.-|.|+... ..+-||.+.+. ..++|+.
T Consensus 14 ~~~~~g~til~aa~~~gi~i-------p~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~-----~gm~V~t 77 (797)
T PRK07860 14 VSVPKGTLVIRAAELLGIQI-------PRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVT-----DGMVVKT 77 (797)
T ss_pred EEeCCCChHHHHHHHcCCCC-------CeecCCCCCCCCcccCccEEEECCCcccccccCCCCC-----CCcEEEe
Confidence 36699999999999999998 77785 47999999999543 23459999999 5777765
No 41
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.43 E-value=0.00029 Score=69.76 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=45.7
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEc
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQ 153 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~ 153 (174)
+++++|+||+++++++||.+..--. ...|...|.|+.|.|+......+||++.+. ..++|+.
T Consensus 11 v~~~~G~til~aa~~~gi~iP~lC~--~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~-----dGM~V~T 72 (819)
T PRK08493 11 CEAQEGEYILNVARRNGIFIPAICY--LSGCSPTLACRLCMVEADGKRVYSCNTKAK-----EGMNILT 72 (819)
T ss_pred EEeCCCCHHHHHHHHcCCccccccc--cCCCCCCccccceEEEECCEEeccccCCCC-----CCCEEEe
Confidence 3569999999999999999821000 124566799999999965445789999999 4555553
No 42
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.41 E-value=0.00076 Score=57.71 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=53.9
Q ss_pred CCCCeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecce
Q 030608 60 EEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTT 139 (174)
Q Consensus 60 ~~~p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~ 139 (174)
+.+++..++|.- +|.. +.+++.++++|+++|+++. .+.+ ....|+ .|.||.|.|..+.....+|.+.
T Consensus 45 ~~~~~~~i~~~V-----NG~~--~~~~v~~~~tLLd~LR~~l-~ltG----tK~GC~-~G~CGACTVlVdG~~v~SCl~l 111 (217)
T PRK11433 45 PAPEISPVTLKV-----NGKT--EQLEVDTRTTLLDALREHL-HLTG----TKKGCD-HGQCGACTVLVNGRRLNACLTL 111 (217)
T ss_pred CCCcCceEEEEE-----CCEE--EEEecCCCCcHHHHHHHhc-CCCC----CCCCCC-CCCcCceEEEECCEEeeeeeee
Confidence 344556666665 6653 2347799999999999853 2322 245799 8999999998665567899988
Q ss_pred ecCCCCCCCeEEEcC
Q 030608 140 VGTPDSTGLVVIQQL 154 (174)
Q Consensus 140 v~~~~~~gdv~I~~l 154 (174)
...-+-..-.+|+=+
T Consensus 112 a~~~~G~~ItTiEGL 126 (217)
T PRK11433 112 AVMHQGAEITTIEGL 126 (217)
T ss_pred hhhcCCCEEEEeCCc
Confidence 742222233445544
No 43
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.36 E-value=0.00059 Score=58.35 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=45.4
Q ss_pred CchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCCc
Q 030608 90 GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLPE 156 (174)
Q Consensus 90 GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lpe 156 (174)
+.++|++|..-. ......+= -++|+ .|.||+|.+.....-||||++.+.+- .+.++|+.++.
T Consensus 33 ~~tvld~L~~ik-~~d~~l~f-r~sCr-~giCGsCa~~iNG~~~LaC~t~~~~~--~~~i~iePl~~ 94 (235)
T PRK12575 33 DRMLLDVLGRVK-AQDETLSY-RRSCR-EGICGSDAMNINGRNGLACLTNMQAL--PREIVLRPLPG 94 (235)
T ss_pred CCcHHHHHHHHH-hcCCCeee-eccCC-CCCCCCCeeEECCeEcchhhCcHhHc--CCCEEEeECCC
Confidence 468999987644 33332221 37899 99999999998777899999999732 25688887754
No 44
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.21 E-value=0.00068 Score=65.49 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=45.3
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCC-----CceecccEEEcCCC--eEEeecceecCCCCCCCeEEEc
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAG-----GGTCGTCMVEKPKN--WRLACQTTVGTPDSTGLVVIQQ 153 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG-----~G~CGTC~V~~~~g--~RLACQ~~v~~~~~~gdv~I~~ 153 (174)
+++++|+||+++++++||.| |+.|.- .|.|.-|.|+.... .+.||.+.+. ..++|..
T Consensus 11 ~~~~~g~~il~a~~~~g~~i-------p~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~-----~gm~v~t 74 (776)
T PRK09129 11 VEVPEGSMVIEAADKAGIYI-------PRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVT-----DGMKVFT 74 (776)
T ss_pred EEeCCCCHHHHHHHHcCCCC-------CcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCC-----CCCEEEc
Confidence 35699999999999999999 667873 57899999995432 3569999999 4566553
No 45
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.21 E-value=0.00053 Score=64.50 Aligned_cols=57 Identities=25% Similarity=0.382 Sum_probs=46.5
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCC-----CCceecccEEEcCC--C-eEEeecceecCCCCCCCeEEEc
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEKPK--N-WRLACQTTVGTPDSTGLVVIQQ 153 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CG-----G~G~CGTC~V~~~~--g-~RLACQ~~v~~~~~~gdv~I~~ 153 (174)
+++++|+||+++++++||++ |+.|. ..|.|..|.|+... . ...||++.+. ..++|+.
T Consensus 8 ~~~~~g~~il~a~~~~gi~i-------p~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~-----~gm~v~t 72 (603)
T TIGR01973 8 LEVPKGTTVLQACLSAGIEI-------PRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVT-----DGMKIST 72 (603)
T ss_pred EEeCCCCHHHHHHHHcCCCc-------cccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCC-----CCCEEEe
Confidence 46699999999999999999 78896 57999999999542 2 4679999999 4566653
No 46
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=96.94 E-value=0.0019 Score=62.50 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=45.2
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCC-----CCceecccEEEcCC---CeEEeecceecCCCCCCCeEEE
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEKPK---NWRLACQTTVGTPDSTGLVVIQ 152 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CG-----G~G~CGTC~V~~~~---g~RLACQ~~v~~~~~~gdv~I~ 152 (174)
+++++|+|||++++++||+| |..|- -.|.|..|.|+... ...-||.+.+. ..++|.
T Consensus 11 v~v~~g~til~a~~~~gi~I-------P~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~-----~gm~v~ 74 (687)
T PRK09130 11 IEVPDGYTLLQACEAAGAEI-------PRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVG-----EGMVIF 74 (687)
T ss_pred EEeCCCCHHHHHHHHcCCCc-------CcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCC-----CCCEEE
Confidence 36699999999999999999 77885 47999999999543 34558999999 455554
No 47
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=96.74 E-value=0.0043 Score=50.89 Aligned_cols=76 Identities=16% Similarity=0.311 Sum_probs=52.9
Q ss_pred EEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCC
Q 030608 66 NFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDS 145 (174)
Q Consensus 66 ~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~ 145 (174)
.++|.- +|.. + .+++.++++|++.|++.|+ .+. ...|+ .|.||.|.|........||.+....-+-
T Consensus 8 ~i~~~v-----NG~~-~-~~~~~~~~~Ll~~LR~~gl--tgt----K~GC~-~G~CGACtVlvdg~~v~SCl~~a~~~~G 73 (159)
T PRK09908 8 TIECTI-----NGMP-F-QLHAAPGTPLSELLREQGL--LSV----KQGCC-VGECGACTVLVDGTAIDSCLYLAAWAEG 73 (159)
T ss_pred eEEEEE-----CCEE-E-EEecCCCCcHHHHHHHcCC--CCC----CCCcC-CCCCCCcEEEECCcEeehhHhhHHHhCC
Confidence 355655 5653 3 3478999999999998654 332 56799 8999999999777778899877654333
Q ss_pred CCCeEEEcCC
Q 030608 146 TGLVVIQQLP 155 (174)
Q Consensus 146 ~gdv~I~~lp 155 (174)
..-.+|+=+.
T Consensus 74 ~~V~TiEGl~ 83 (159)
T PRK09908 74 KEIRTLEGEA 83 (159)
T ss_pred CEEEeecCCC
Confidence 3445555553
No 48
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=96.34 E-value=0.012 Score=47.66 Aligned_cols=65 Identities=26% Similarity=0.456 Sum_probs=46.5
Q ss_pred EEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcC
Q 030608 84 FRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 84 ~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~l 154 (174)
.++++++++|++.+++. +.+.+ ....|+ .|.||.|.|......+.||.+.+..-+-..-.+|+-+
T Consensus 12 ~~~~~~~~~Ll~~LR~~-lgltg----~K~gC~-~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiEgl 76 (148)
T TIGR03193 12 EDAVADNMLLVDYLRDT-VGLTG----TKQGCD-GGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGL 76 (148)
T ss_pred EeecCCCCcHHHHHHHh-cCCCC----CCCCCC-CCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeCCC
Confidence 34779999999999984 22322 256799 8999999999877788999887753322334555555
No 49
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=96.18 E-value=0.012 Score=57.75 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=44.8
Q ss_pred ecCCCchHHHHHHHCCCCccCCCCCCCCC-----CCCCceecccEEEcCC--CeEEeecceecCCCCCCCeEEEc
Q 030608 86 TACGGQKLRDIMLNSNIDLYGPYARPLSN-----CAGGGTCGTCMVEKPK--NWRLACQTTVGTPDSTGLVVIQQ 153 (174)
Q Consensus 86 ea~~GetLldaal~~GI~L~~p~~k~~~~-----CGG~G~CGTC~V~~~~--g~RLACQ~~v~~~~~~gdv~I~~ 153 (174)
++++|+|||++++++||+| |+. |+=.|.|.-|.|+... .-+-||-+.+.+ .++|..
T Consensus 12 ~v~~g~tvLqAa~~aGi~I-------P~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~d-----GM~I~T 74 (693)
T COG1034 12 EVPEGETVLQAAREAGIDI-------PTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTD-----GMVIST 74 (693)
T ss_pred ecCCCcHHHHHHHHcCCCC-------CcccccCCCCcccceeEEEEEecCCCccccccccccCC-----CeEEec
Confidence 5699999999999999999 544 5777999999999433 567899998884 555653
No 50
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=95.52 E-value=0.034 Score=55.67 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=42.5
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCC-----CCceecccEEEcCCCeEEeecceecC
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVEKPKNWRLACQTTVGT 142 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CG-----G~G~CGTC~V~~~~g~RLACQ~~v~~ 142 (174)
+++++|+|+|++++++||++ |+.|- --++|-+|.|+......=||-+.+.+
T Consensus 15 ~~v~~G~tiL~a~~~~gI~i-------P~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~d 70 (978)
T COG3383 15 IEVEEGTTILRAANRNGIEI-------PHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVED 70 (978)
T ss_pred EecCCChHHHHHHHhcCCcc-------cceeccCCCCcccccceEEEEecCceeccccccccC
Confidence 36799999999999999999 78885 34799999999555456689998884
No 51
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=95.34 E-value=0.051 Score=44.11 Aligned_cols=69 Identities=22% Similarity=0.364 Sum_probs=46.6
Q ss_pred CCCeeEEEEecCCCchHHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcC
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~l 154 (174)
+|.. + .+++.++++|++.|++. |+.- ....|+ .|.||.|.|..+..-..||.+....-+-..-.+|+=+
T Consensus 9 NG~~-~-~~~~~~~~~Ll~~LR~~~~ltg------tK~gC~-~G~CGACtVlvdG~~v~SCl~~~~~~~G~~v~TiEgl 78 (151)
T TIGR03198 9 NGQA-W-EVAAVPTTRLSDLLRKELQLTG------TKVSCG-IGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGI 78 (151)
T ss_pred CCEE-E-EeecCCCcHHHHHHHhccCCCC------CCCCCC-CCcCCccEEEECCcEEechHHHHHHhcCCEEEecCCc
Confidence 5543 3 33668899999999974 5442 145699 8999999999766677899877653222333445544
No 52
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=94.68 E-value=0.049 Score=55.01 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=47.1
Q ss_pred CCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcC
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~l 154 (174)
+|.. +.+++.++++|++.|++ +.+.+. -..|-|.|.||.|.|........+|.+....-+-..-.+|+=|
T Consensus 8 Ng~~--~~~~~~~~~~l~~~LR~--~~~~~~----k~g~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tvegl 77 (956)
T PRK09800 8 NGAP--QELTVNPGENVQKLLFN--MGMHSV----RNSDDGFGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESL 77 (956)
T ss_pred CCEE--EEEecCCCCCHHHHHHH--CCCCcc----ccCCCCcccCCCCEEEECCeEEeHHHHHHHHcCCCEEEecCCc
Confidence 5543 24467899999999999 444332 2334349999999999877788899877653322333455544
No 53
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=94.63 E-value=0.026 Score=47.01 Aligned_cols=44 Identities=20% Similarity=0.576 Sum_probs=31.4
Q ss_pred HHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecc
Q 030608 93 LRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQT 138 (174)
Q Consensus 93 Lldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~ 138 (174)
+.+++.++|++.+.-..+ .+.|| .|.||.|.|....+-|++|.-
T Consensus 196 v~~~l~~~Gv~~~~~~e~-~m~cg-~G~C~~C~~~~~~~~~~~C~~ 239 (250)
T PRK00054 196 VVEILKEKKVPAYVSLER-RMKCG-IGACGACVCDTETGGKRVCKD 239 (250)
T ss_pred HHHHHHHcCCcEEEEEcc-cccCc-CcccCcCCcccCCCCEEEeCc
Confidence 566777788764332222 56788 999999999865566899953
No 54
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=94.62 E-value=0.04 Score=45.94 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=34.2
Q ss_pred HHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeeccee
Q 030608 93 LRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTV 140 (174)
Q Consensus 93 Lldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v 140 (174)
+.+.+++.|++.+.-.-+ .+.|| .|.||.|.|....++++.|.-=+
T Consensus 195 ~~~~l~~~Gv~~~~s~e~-~m~Cg-~G~C~~C~~~~~~~~~~~C~~Gp 240 (248)
T cd06219 195 VSELTRPYGIPTVVSLNP-IMVDG-TGMCGACRVTVGGETKFACVDGP 240 (248)
T ss_pred HHHHHHHcCCCEEEEecc-cccCc-cceeeeEEEEeCCCEEEEeCcCC
Confidence 567778889986543322 68899 99999999986556789997443
No 55
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=94.21 E-value=0.095 Score=43.09 Aligned_cols=71 Identities=23% Similarity=0.372 Sum_probs=48.8
Q ss_pred CCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCC
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
+|.. +.+++.++++|+++|++.. .+-+ .-..|+ .|.||.|-|..+-.-..||.+....-+-..-.+|+=+-
T Consensus 9 NG~~--~~~~~~p~~~Ll~~LRd~l-~ltg----tk~GC~-~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiEGl~ 79 (156)
T COG2080 9 NGEP--VELDVDPRTPLLDVLRDEL-GLTG----TKKGCG-HGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIEGLA 79 (156)
T ss_pred CCeE--EEEEeCCCChHHHHHHHhc-CCCC----cCCCCC-CccCCceEEEECCeEehHHHHHHHHhCCCeEEEeeccc
Confidence 4543 3357899999999999642 2322 256799 99999999997777788998776533333445555443
No 56
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=94.15 E-value=0.057 Score=46.19 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=34.0
Q ss_pred HHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecce
Q 030608 93 LRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTT 139 (174)
Q Consensus 93 Lldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~ 139 (174)
+.+.+++.|++++..+.. .+.|| .|.|+.|.|....++++.|.=-
T Consensus 196 v~~~l~~~gv~~~~sle~-~M~CG-~G~C~~C~v~~~~~~~~~C~dG 240 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNP-IMVDG-TGMCGACRVTVGGETKFACVDG 240 (281)
T ss_pred HHHHHHhcCCCEEEECcc-cccCc-ccccceeEEEECCCEEEEeCCC
Confidence 557778889976555444 78996 9999999998545567899743
No 57
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=93.85 E-value=0.045 Score=47.00 Aligned_cols=45 Identities=22% Similarity=0.553 Sum_probs=34.0
Q ss_pred hHHHHHHHCCCC---ccCCCCCCCCCCCCCceecccEEEcCCCeEEeecc
Q 030608 92 KLRDIMLNSNID---LYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQT 138 (174)
Q Consensus 92 tLldaal~~GI~---L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~ 138 (174)
.+.+.+++.|++ ++..... .+.|| .|.||.|+|....+.+++|.-
T Consensus 226 ~v~~~L~~~Gv~~~~i~~~l~~-~m~cg-~g~c~~c~~~~~~~~~~~c~~ 273 (289)
T PRK08345 226 FVFKELINRGYRPERIYVTLER-RMRCG-IGKCGHCIVGTSTSIKYVCKD 273 (289)
T ss_pred HHHHHHHHcCCCHHHEEEEehh-ccccc-CcccCCCccCCCCcceEEeCC
Confidence 477778889985 4433222 58899 999999999966677889974
No 58
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=93.16 E-value=0.093 Score=43.77 Aligned_cols=45 Identities=13% Similarity=0.395 Sum_probs=33.2
Q ss_pred hHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcC---CCeEEeecc
Q 030608 92 KLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKP---KNWRLACQT 138 (174)
Q Consensus 92 tLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~---~g~RLACQ~ 138 (174)
.+.+++++.|++...-+.+ .+.|| .|.||.|.+... .+.+|+|.-
T Consensus 194 ~~~~~L~~~Gv~~~~~~~~-~~~~~-~g~c~~c~~~~~~~~~~~~~~c~~ 241 (246)
T cd06218 194 AVAELAAERGVPCQVSLEE-RMACG-IGACLGCVVKTKDDEGGYKRVCKD 241 (246)
T ss_pred HHHHHHHhcCCCEEEEecc-cccCc-cceecccEEEeecCCCccEEEeCc
Confidence 3677788889985443333 67888 799999999832 578999953
No 59
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=92.65 E-value=0.14 Score=42.27 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=30.3
Q ss_pred HHHHHHHC--CCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecce
Q 030608 93 LRDIMLNS--NIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTT 139 (174)
Q Consensus 93 Lldaal~~--GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~ 139 (174)
+.+.+.+. ++.++.-... .+.|| .|.||.|.|....+.+++|.--
T Consensus 193 ~~~~l~~~g~~~~~~~s~~~-~m~Cg-~G~C~~C~~~~~~~~~~~C~~g 239 (243)
T cd06192 193 VVEALDEWLQLIKASVSNNS-PMCCG-IGICGACTIETKHGVKRLCKDG 239 (243)
T ss_pred HHHHHHhhcCCceEEEECCc-cccCc-cccccceEEEeCCCeEEEeCCC
Confidence 45555555 4454443333 68898 8999999998555557999643
No 60
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=92.46 E-value=0.16 Score=51.26 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=44.4
Q ss_pred EEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcC
Q 030608 84 FRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 84 ~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~l 154 (174)
.+++.++++|++.|++.|+. +. | ...|+ .|.||.|.|.....-..||.+....-+-..-.+||=|
T Consensus 9 ~~~~~~~~~l~~~LR~~~l~--~~--k-~~~c~-~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl 73 (951)
T TIGR03313 9 TLECKLGENVQTLLFNMGMH--SV--R-NSDDG-FGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESL 73 (951)
T ss_pred EEecCCCCCHHHHHHHCCCC--CC--c-CCCCC-cccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcC
Confidence 34678999999999997543 21 1 12465 9999999999777778899877653333333444444
No 61
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=91.82 E-value=0.28 Score=45.83 Aligned_cols=70 Identities=23% Similarity=0.451 Sum_probs=45.4
Q ss_pred CCCeeEEEEecCCCchHHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEEc----CC-----CeEEeecceecCCCCC
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEK----PK-----NWRLACQTTVGTPDST 146 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~~----~~-----g~RLACQ~~v~~~~~~ 146 (174)
+|.. ++.-++.++++|++.++++ |+. + .-..|+ .|.||.|.|.. +. ....||.+-+..-+-.
T Consensus 6 Ng~~-~~~~~~~~~~~ll~~lR~~~~l~--g----~k~gC~-~G~CGaCtv~~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 77 (467)
T TIGR02963 6 NGET-VTLSDVDPTRTLLDYLREDAGLT--G----TKEGCA-EGDCGACTVVVGELVDGGKLRYRSVNACIQFLPSLDGK 77 (467)
T ss_pred CCEE-EEeecCCCCCCHHHHHHHhcCCC--C----CCcccC-CCCCCceEEEEEecCCCCcccceEEehhhhhHHhcCCC
Confidence 4543 3322578999999999973 543 2 245799 89999999985 44 4667887766532222
Q ss_pred CCeEEEcC
Q 030608 147 GLVVIQQL 154 (174)
Q Consensus 147 gdv~I~~l 154 (174)
.-++|+=+
T Consensus 78 ~i~TvEgl 85 (467)
T TIGR02963 78 AVVTVEDL 85 (467)
T ss_pred EEEecCCC
Confidence 33445544
No 62
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=90.99 E-value=0.29 Score=48.79 Aligned_cols=62 Identities=21% Similarity=0.420 Sum_probs=44.3
Q ss_pred ecCCCchHHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcC
Q 030608 86 TACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 86 ea~~GetLldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~l 154 (174)
++.++++|++.|++. |+. + ....|+ .|.||.|.|.....-..+|.+....-+-..-.+|+=|
T Consensus 11 ~~~~~~~l~~~lr~~~~~~--~----~k~gc~-~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl 73 (848)
T TIGR03311 11 DVNEEKKLLEFLREDLRLT--G----VKNGCG-EGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGL 73 (848)
T ss_pred eCCCCCcHHHHHHHhcCCC--c----CCCCCC-CCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCC
Confidence 568999999999973 543 2 145799 8999999999777778899877654333334444444
No 63
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=90.56 E-value=0.24 Score=40.68 Aligned_cols=42 Identities=21% Similarity=0.530 Sum_probs=29.1
Q ss_pred hHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeec
Q 030608 92 KLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQ 137 (174)
Q Consensus 92 tLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ 137 (174)
.+.+++++.|++..--+.+ .+.|| .|.||.|.|... + +++|.
T Consensus 181 ~~~~~L~~~g~~~~i~~e~-f~~cg-~g~C~~C~v~~~-~-~~~c~ 222 (233)
T cd06220 181 KVLEILDERGVRAQFSLER-YMKCG-IGICGSCCIDPT-G-LRVCR 222 (233)
T ss_pred HHHHHHHhcCCcEEEEecc-cccCc-CCCcCccEeccC-C-eEEeC
Confidence 3677788888852222222 57788 999999999964 4 57775
No 64
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=89.31 E-value=0.42 Score=46.36 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=33.4
Q ss_pred HHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeeccee
Q 030608 93 LRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTV 140 (174)
Q Consensus 93 Lldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v 140 (174)
+.+.+.+.|++.+.-.-+ .+.|| .|.||.|.|.....+++.|.==+
T Consensus 196 v~~~l~~~gv~~~~Sle~-~M~CG-~G~C~~C~v~~~~~~~~~C~dGP 241 (752)
T PRK12778 196 VCLLTKKYGIPTIVSLNT-IMVDG-TGMCGACRVTVGGKTKFACVDGP 241 (752)
T ss_pred HHHHHHHcCCCEEEeCcc-cccCc-ccccCcceeEeCCCeEEEECCCC
Confidence 456777888886444333 68896 99999999985445688997554
No 65
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=88.74 E-value=0.58 Score=48.96 Aligned_cols=70 Identities=19% Similarity=0.368 Sum_probs=45.6
Q ss_pred CCCeeEEEEecCCCchHHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEEcC----------CCeEEeecceecCCCC
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEKP----------KNWRLACQTTVGTPDS 145 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~~~----------~g~RLACQ~~v~~~~~ 145 (174)
+|.. ++..++.++++|++.|++. |+. +. -..|+ .|.||.|-|... ....-||.+.+..-+-
T Consensus 8 Ng~~-~~~~~~~~~~~ll~~LR~~~~l~--gt----k~gC~-~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g 79 (1330)
T TIGR02969 8 NGRK-VVEKNVDPETMLLPYLRKKLRLT--GT----KYGCG-GGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYG 79 (1330)
T ss_pred CCEE-EEeccCCCCCcHHHHHHhhcCCC--CC----CCCcC-CCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCC
Confidence 5554 3344678999999999973 443 22 45799 899999999943 2456788776653222
Q ss_pred CCCeEEEcC
Q 030608 146 TGLVVIQQL 154 (174)
Q Consensus 146 ~gdv~I~~l 154 (174)
..-++|+=|
T Consensus 80 ~~v~TvEgl 88 (1330)
T TIGR02969 80 AAVTTVEGI 88 (1330)
T ss_pred CEEEecCCc
Confidence 234445544
No 66
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=88.23 E-value=2 Score=37.92 Aligned_cols=64 Identities=20% Similarity=0.411 Sum_probs=44.7
Q ss_pred CCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCC
Q 030608 89 GGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 89 ~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
=|--+||++.+-.-+++..++- --+|. .|.||.|......+--|||-+.+..+. .....|..||
T Consensus 75 CGpMvLDALiKIKnE~DptLTF-RRSCR-EGICGSCAMNI~G~NtLACi~kId~n~-sK~~kIyPLP 138 (288)
T KOG3049|consen 75 CGPMVLDALIKIKNEMDPTLTF-RRSCR-EGICGSCAMNINGTNTLACICKIDQNE-SKSTKIYPLP 138 (288)
T ss_pred cchHHHHHHHHhhcccCCceeh-hhhhh-ccccccceeccCCCceeEEEEeeccCC-cccceeecCc
Confidence 3778999997655444332221 24899 999999999977667899999987433 3445666665
No 67
>PRK05802 hypothetical protein; Provisional
Probab=87.74 E-value=0.54 Score=41.52 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=30.9
Q ss_pred HHHHHHH--CCCCccCCCCCCCCCCCCCceecccEEEcCCC-eEEeecceec
Q 030608 93 LRDIMLN--SNIDLYGPYARPLSNCAGGGTCGTCMVEKPKN-WRLACQTTVG 141 (174)
Q Consensus 93 Lldaal~--~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g-~RLACQ~~v~ 141 (174)
+.+.+.+ .||.++.-.-+ .+.|| .|.||.|.|....+ ++..|...+.
T Consensus 269 v~~~l~~~~~~i~~~~Sle~-~M~CG-~G~Cg~C~v~~~g~~~~r~Ck~q~~ 318 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNA-KMCCG-EGICGACTVRYGGHKVKRLCKVQVD 318 (320)
T ss_pred HHHHHhhhcCCceEEEeCCC-eeeCc-CccCCeeEEEECCEEEEEEeeeecC
Confidence 3444555 67765333222 57898 99999999995433 4678887654
No 68
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=86.84 E-value=2.2 Score=43.09 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=48.9
Q ss_pred EEecCCCchHHHHHHHCCCCccC--C-CCC-CCCCCCCCceecccEEEcCCC-----eEEeecceecCCCCCCCeEEEcC
Q 030608 84 FRTACGGQKLRDIMLNSNIDLYG--P-YAR-PLSNCAGGGTCGTCMVEKPKN-----WRLACQTTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 84 ~~ea~~GetLldaal~~GI~L~~--p-~~k-~~~~CGG~G~CGTC~V~~~~g-----~RLACQ~~v~~~~~~gdv~I~~l 154 (174)
.+++.+|+||.-||+.+|+.+-. . |++ .-..|. .|.|--|.|....+ -..||++.+. ..++|+..
T Consensus 21 ~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~~~~~~~~~~ac~~~~~-----~gm~~~~~ 94 (985)
T TIGR01372 21 SYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGSGAQREPNTRATTQELY-----DGLVATSQ 94 (985)
T ss_pred EeecCCCCHHHHHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECCCcCCCCCccceeEEcc-----cCCEEecc
Confidence 34779999999999999987521 1 211 125786 88899999995422 2579999999 67777765
Q ss_pred Ccc
Q 030608 155 PEW 157 (174)
Q Consensus 155 pe~ 157 (174)
.-|
T Consensus 95 ~~~ 97 (985)
T TIGR01372 95 NRW 97 (985)
T ss_pred cCC
Confidence 444
No 69
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=86.09 E-value=0.58 Score=30.10 Aligned_cols=26 Identities=27% Similarity=0.786 Sum_probs=18.5
Q ss_pred CCCCCCCceecccEEEcCC--CeEEeecc
Q 030608 112 LSNCAGGGTCGTCMVEKPK--NWRLACQT 138 (174)
Q Consensus 112 ~~~CGG~G~CGTC~V~~~~--g~RLACQ~ 138 (174)
.+.|| -|.|+.|.|.... ++++.|.=
T Consensus 3 ~M~CG-~G~C~~C~v~~~~~~~~~~vC~d 30 (40)
T PF10418_consen 3 RMACG-VGACGGCVVPVKDGDGYKRVCKD 30 (40)
T ss_dssp --SSS-SSSS-TTEEECSSTTSEEETTTT
T ss_pred cccCC-CcEeCCcEeeeecCCcCEEEeCc
Confidence 46797 9999999999443 38899864
No 70
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=85.04 E-value=0.5 Score=39.55 Aligned_cols=34 Identities=18% Similarity=0.494 Sum_probs=24.4
Q ss_pred hHHHHHHHCCCC---ccCCCCCCCCCCCCCceecccEEE
Q 030608 92 KLRDIMLNSNID---LYGPYARPLSNCAGGGTCGTCMVE 127 (174)
Q Consensus 92 tLldaal~~GI~---L~~p~~k~~~~CGG~G~CGTC~V~ 127 (174)
.+.+++++.|++ ++.-.. .-+-|| .|.||.|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~-~~~~~~-~g~c~~c~~~ 240 (253)
T cd06221 204 FVAKELLKLGVPEEQIWVSLE-RRMKCG-VGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHcCCCHHHEEEehh-hccccC-CccccCcccC
Confidence 367888899997 544332 135565 9999999997
No 71
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=84.83 E-value=1 Score=45.69 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=31.7
Q ss_pred HHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeeccee
Q 030608 93 LRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTV 140 (174)
Q Consensus 93 Lldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v 140 (174)
+.+.+++.||+.+-.... .+.|| -|.||.|+|.....++++|.==+
T Consensus 196 v~~~~~~~gi~~~vSle~-~M~cG-~G~Cg~C~v~~~~~~~~~C~DGP 241 (1006)
T PRK12775 196 CVETTRPFGVKTMVSLNA-IMVDG-TGMCGSCRVTVGGEVKFACVDGP 241 (1006)
T ss_pred HHHHHHHCCCcEEECChh-heeCc-cceeCCCEeeeCCceEEEeCCCC
Confidence 445667789843332222 67897 99999999985556788886443
No 72
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=83.75 E-value=0.68 Score=39.20 Aligned_cols=39 Identities=26% Similarity=0.652 Sum_probs=26.3
Q ss_pred HHHHHHHCCCC---ccCCCCCCCCCCCCCceecccEEEcCCCeEEeec
Q 030608 93 LRDIMLNSNID---LYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQ 137 (174)
Q Consensus 93 Lldaal~~GI~---L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ 137 (174)
+.+.+++.|++ |+.-+.. .+.|| .|.||.|+|.. .+.|+
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~-~m~cg-~g~c~~c~~~~----~~~c~ 246 (261)
T TIGR02911 205 TVQELLKKGIKEENIWVSYER-KMCCG-VGKCGHCKIDD----VYVCL 246 (261)
T ss_pred HHHHHHHcCCCHHHEEEEecc-ceecc-CcCCCCcccCC----EEEEC
Confidence 56667888885 2221221 46677 99999999972 66775
No 73
>PLN00192 aldehyde oxidase
Probab=81.45 E-value=2.7 Score=44.28 Aligned_cols=70 Identities=16% Similarity=0.319 Sum_probs=44.4
Q ss_pred CCCeeEEEEecCCCchHHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEEc----------CCCeEEeecceecCCCC
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEK----------PKNWRLACQTTVGTPDS 145 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~~----------~~g~RLACQ~~v~~~~~ 145 (174)
+|.. ++.-++.++++|++.|+++ |+. + .-..|+ .|.||.|.|.. .....-||.+-+..-.-
T Consensus 11 Ng~~-~~~~~~~p~~~Ll~~LR~~~~lt--g----tK~gC~-~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 82 (1344)
T PLN00192 11 NGER-FELSSVDPSTTLLEFLRTQTPFK--S----VKLGCG-EGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNG 82 (1344)
T ss_pred CCEE-EEeccCCCCCcHHHHHHHhhCCC--C----cCCCCC-CCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCC
Confidence 5543 3332578999999999974 443 2 246799 99999999983 23455677766543222
Q ss_pred CCCeEEEcC
Q 030608 146 TGLVVIQQL 154 (174)
Q Consensus 146 ~gdv~I~~l 154 (174)
..-++||=+
T Consensus 83 ~~i~TvEgl 91 (1344)
T PLN00192 83 CSITTSEGL 91 (1344)
T ss_pred CEEEeecCc
Confidence 234555544
No 74
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=77.54 E-value=1 Score=38.16 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=23.4
Q ss_pred HHHHHHHCCCC---ccCCCCCCCCCCCCCceecccEEE
Q 030608 93 LRDIMLNSNID---LYGPYARPLSNCAGGGTCGTCMVE 127 (174)
Q Consensus 93 Lldaal~~GI~---L~~p~~k~~~~CGG~G~CGTC~V~ 127 (174)
+.+.+++.|++ |+.-+-. .+.|| .|.||.|+|.
T Consensus 207 ~~~~L~~~Gv~~~~i~~~~~~-~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 207 TVLEFLKRGIKEENIWVSYER-KMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHHHcCCCHHHEEEEecc-eeEcc-CcccCCcccC
Confidence 56777888985 3222221 57787 9999999987
No 75
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=76.40 E-value=5.9 Score=38.88 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=43.9
Q ss_pred CCeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCC-----CCceecccEEE--cCCCeEE
Q 030608 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----GGGTCGTCMVE--KPKNWRL 134 (174)
Q Consensus 62 ~p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CG-----G~G~CGTC~V~--~~~g~RL 134 (174)
|-.|++ |+. |-.+ .+.+|.|+|++....|++| |-.|- =.|.|--|.|+ +...-.-
T Consensus 30 ~~~iev-fvd-----~~~v-----~v~pg~tvlqac~~~gv~i-------prfcyh~rlsvagncrmclvevekspkpva 91 (708)
T KOG2282|consen 30 PNKIEV-FVD-----DQSV-----MVEPGTTVLQACAKVGVDI-------PRFCYHERLSVAGNCRMCLVEVEKSPKPVA 91 (708)
T ss_pred ccceEE-EEC-----CeeE-----eeCCCcHHHHHHHHhCCCc-------chhhhhhhhhhccceeEEEEEeccCCCcch
Confidence 556777 774 4433 4489999999999999999 55663 25889999998 3333345
Q ss_pred eecceec
Q 030608 135 ACQTTVG 141 (174)
Q Consensus 135 ACQ~~v~ 141 (174)
+|-.-+.
T Consensus 92 ~campvm 98 (708)
T KOG2282|consen 92 ACAMPVM 98 (708)
T ss_pred hhccccc
Confidence 6665554
No 76
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=75.68 E-value=4.2 Score=29.67 Aligned_cols=31 Identities=29% Similarity=0.604 Sum_probs=23.4
Q ss_pred eeeCCCCCeeEEEEecCCCchHHHHH----HHCCCCc
Q 030608 72 SVLLPDGTPDIHFRTACGGQKLRDIM----LNSNIDL 104 (174)
Q Consensus 72 ~v~l~dGt~~v~~~ea~~GetLldaa----l~~GI~L 104 (174)
.+.||||+.+ .+.+.+|++|.|++ ...|+.+
T Consensus 3 rV~LPdg~~T--~V~vrpG~ti~d~L~kllekRgl~~ 37 (73)
T cd01817 3 RVILPDGSTT--VVPTRPGESIRDLLSGLCEKRGINY 37 (73)
T ss_pred EEECCCCCeE--EEEecCCCCHHHHHHHHHHHcCCCh
Confidence 3679999874 56789999988776 4567765
No 77
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=71.94 E-value=5.5 Score=28.50 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=23.3
Q ss_pred eeeCCCCCeeEEEEecCCCchHHHHH----HHCCCCc
Q 030608 72 SVLLPDGTPDIHFRTACGGQKLRDIM----LNSNIDL 104 (174)
Q Consensus 72 ~v~l~dGt~~v~~~ea~~GetLldaa----l~~GI~L 104 (174)
.+.+|||.. ..+.+.+|+|++|++ ...|+..
T Consensus 3 ~V~LPng~~--t~V~vrpg~ti~d~L~~~c~kr~l~~ 37 (72)
T cd01760 3 RVYLPNGQR--TVVPVRPGMSVRDVLAKACKKRGLNP 37 (72)
T ss_pred EEECcCCCe--EEEEECCCCCHHHHHHHHHHHcCCCH
Confidence 367899987 456889999988876 4567664
No 78
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=69.90 E-value=5.4 Score=40.51 Aligned_cols=45 Identities=22% Similarity=0.393 Sum_probs=30.5
Q ss_pred HHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-cCCCe---EEeecce
Q 030608 93 LRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE-KPKNW---RLACQTT 139 (174)
Q Consensus 93 Lldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~-~~~g~---RLACQ~~ 139 (174)
+.+.+++.||+.+.-+.+ .+.|| -|.||.|.|. ...|. ++.|.==
T Consensus 862 v~~~l~~~Gv~~~vSlE~-~M~CG-~G~C~~C~v~~~~~G~~~~~~vC~DG 910 (944)
T PRK12779 862 VSDLTKPYGVKTVASLNS-IMVDA-TGMCGACMVPVTIDGKMVRKHACIDG 910 (944)
T ss_pred HHHHHHHcCCCeEEeecc-cccCC-CeeeCeeeeeeecCCeeeeeEEECCC
Confidence 456667889886332232 68897 9999999997 33342 6788644
No 79
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=67.50 E-value=8 Score=36.69 Aligned_cols=76 Identities=24% Similarity=0.392 Sum_probs=48.4
Q ss_pred EEEEeeeeeCCCCCeeEEEEecCCCchHHHHHH-HCCCCccCCCCCCCCCCCCCceecccEEE----cCCC-----eEEe
Q 030608 66 NFAFVHSVLLPDGTPDIHFRTACGGQKLRDIML-NSNIDLYGPYARPLSNCAGGGTCGTCMVE----KPKN-----WRLA 135 (174)
Q Consensus 66 ~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal-~~GI~L~~p~~k~~~~CGG~G~CGTC~V~----~~~g-----~RLA 135 (174)
.|.|.. +|.. +....+.+..||||-++ +.++.-- .-.|. .|-||.|.|. ...+ +.=|
T Consensus 8 ~irf~l-----N~~~-~~l~~v~P~~TlLd~LR~d~~ltGt------KEGCA-EGDCGACTVlVgrl~~g~~l~yeSVNA 74 (493)
T COG4630 8 TIRFLL-----NGET-RVLSDVPPTTTLLDYLRLDRRLTGT------KEGCA-EGDCGACTVLVGRLVDGGSLRYESVNA 74 (493)
T ss_pred eeEEEe-----cCce-EEeecCCcchHHHHHHHHhcccccc------ccccc-CCCcCceEEEEEeecCCCceeeeehhH
Confidence 455665 4443 34557899999999998 6666431 23598 9999999998 2233 2347
Q ss_pred ecceecCCCCCCCeEEEcC
Q 030608 136 CQTTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 136 CQ~~v~~~~~~gdv~I~~l 154 (174)
|-..+..-+-..-++|+-+
T Consensus 75 Cirfl~sL~G~hvvTvE~L 93 (493)
T COG4630 75 CIRFLGSLDGTHVVTVEHL 93 (493)
T ss_pred HHHHHhhcCCceEEEehhh
Confidence 8777664444444555543
No 80
>smart00455 RBD Raf-like Ras-binding domain.
Probab=65.21 E-value=9.7 Score=26.83 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=22.8
Q ss_pred eeCCCCCeeEEEEecCCCchHHHHH----HHCCCCc
Q 030608 73 VLLPDGTPDIHFRTACGGQKLRDIM----LNSNIDL 104 (174)
Q Consensus 73 v~l~dGt~~v~~~ea~~GetLldaa----l~~GI~L 104 (174)
+.+|||.. ..+.+.+|++|+|++ ...|+..
T Consensus 4 v~LP~~~~--~~V~vrpg~tl~e~L~~~~~kr~l~~ 37 (70)
T smart00455 4 VHLPDNQR--TVVKVRPGKTVRDALAKALKKRGLNP 37 (70)
T ss_pred EECCCCCE--EEEEECCCCCHHHHHHHHHHHcCCCH
Confidence 56899986 456889999988876 4567765
No 81
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=61.11 E-value=9.3 Score=26.88 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=20.2
Q ss_pred eeCCCCCeeEEEEecCCCchHHHHHH----HCCCCc
Q 030608 73 VLLPDGTPDIHFRTACGGQKLRDIML----NSNIDL 104 (174)
Q Consensus 73 v~l~dGt~~v~~~ea~~GetLldaal----~~GI~L 104 (174)
+.||||.. ..+.+.+|++++|++. ..|+.+
T Consensus 5 v~LP~~q~--t~V~vrpg~ti~d~L~~~~~kr~L~~ 38 (71)
T PF02196_consen 5 VHLPNGQR--TVVQVRPGMTIRDALSKACKKRGLNP 38 (71)
T ss_dssp EEETTTEE--EEEEE-TTSBHHHHHHHHHHTTT--C
T ss_pred EECCCCCE--EEEEEcCCCCHHHHHHHHHHHcCCCH
Confidence 56899987 4567899999988774 456654
No 82
>PLN02906 xanthine dehydrogenase
Probab=51.49 E-value=13 Score=39.22 Aligned_cols=57 Identities=21% Similarity=0.464 Sum_probs=36.6
Q ss_pred chHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCC-----C-----eEEeecceecCCCCCCCeEEEcC
Q 030608 91 QKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPK-----N-----WRLACQTTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 91 etLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~-----g-----~RLACQ~~v~~~~~~gdv~I~~l 154 (174)
++|++.|++ ..+.+. -..|+ .|.||.|.|.... + ..-||-+-+..-+-..-++|+=+
T Consensus 2 ~~ll~~LR~--~~l~g~----k~gC~-~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl 68 (1319)
T PLN02906 2 QTLLEYLRD--LGLTGT----KLGCG-EGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGI 68 (1319)
T ss_pred CcHHHHHHh--CCCCCC----CCCcC-CCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCC
Confidence 589999997 545442 56799 8999999998431 2 55677766543222234445444
No 83
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=45.52 E-value=29 Score=25.81 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=26.3
Q ss_pred eeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCC
Q 030608 64 VVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID 103 (174)
Q Consensus 64 ~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~ 103 (174)
.|++.|.. ++.-. .-.+++++|.|+.+|+...||.
T Consensus 2 ~VeV~yA~----p~~q~-~~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 2 RVEVAYAL----PERQV-ILTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEEEE----TTCEE-EEEEEEETT-BHHHHHHHHTHH
T ss_pred EEEEEEEC----CCeEE-EEEEECCCcCcHHHHHHHcCch
Confidence 36777776 66544 4456889999999999999986
No 84
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=40.46 E-value=40 Score=35.82 Aligned_cols=40 Identities=23% Similarity=0.490 Sum_probs=29.7
Q ss_pred EEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE
Q 030608 82 IHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE 127 (174)
Q Consensus 82 v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~ 127 (174)
+....+.+..||+..+++ ...+-+ ....|+ .|-||.|.|-
T Consensus 12 ~~~~~vdP~~TL~~fLR~-k~~ltg----tKlgC~-EGGCGaCtv~ 51 (1257)
T KOG0430|consen 12 VEVELLPPDLTLNTFLRE-KLGLTG----TKLGCG-EGGCGACTVV 51 (1257)
T ss_pred eeEecCCcchhHHHHHHH-hcCCcc----eeeccC-CCCccceEEE
Confidence 445457888889888765 455543 256899 9999999997
No 85
>PRK01777 hypothetical protein; Validated
Probab=36.58 E-value=97 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=26.9
Q ss_pred eeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCcc
Q 030608 64 VVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLY 105 (174)
Q Consensus 64 ~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~ 105 (174)
.|++.|.. ++.-. ...+++++|.|+.|++...||...
T Consensus 5 ~v~V~ya~----~~~~~-~~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 5 RVEVVYAL----PERQY-LQRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred EEEEEEEC----CCceE-EEEEEcCCCCcHHHHHHHcCCCcc
Confidence 45665655 54433 345688999999999999999764
No 86
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=34.97 E-value=48 Score=24.36 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=17.4
Q ss_pred eeCCCCCeeEEEEecCCCchHHHHHHH
Q 030608 73 VLLPDGTPDIHFRTACGGQKLRDIMLN 99 (174)
Q Consensus 73 v~l~dGt~~v~~~ea~~GetLldaal~ 99 (174)
+.||+.-. +.+++.+|++|+|++.+
T Consensus 4 ~~LPnqQr--T~V~vrpG~tl~daL~K 28 (74)
T cd01816 4 VFLPNKQR--TVVNVRPGMTLRDALAK 28 (74)
T ss_pred EECCCCCe--EEEEecCCcCHHHHHHH
Confidence 34566543 34577999999988755
No 87
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.28 E-value=1.2e+02 Score=21.59 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=33.6
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCc
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDL 104 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L 104 (174)
+.++|+.+...+|+...+=..+|+.-+.+++++.++|++.
T Consensus 32 ~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~p~ 71 (77)
T PF14026_consen 32 PGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRAGLPA 71 (77)
T ss_pred CCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHcCCCc
Confidence 6788888888877766566678999999999999999986
No 88
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=27.15 E-value=53 Score=30.36 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=15.7
Q ss_pred CCCchHHHHHHHCCCCc
Q 030608 88 CGGQKLRDIMLNSNIDL 104 (174)
Q Consensus 88 ~~GetLldaal~~GI~L 104 (174)
..|+|||.||+++.=++
T Consensus 80 RSGTTLMRAmLDAHPdV 96 (378)
T KOG3988|consen 80 RSGTTLMRAMLDAHPDV 96 (378)
T ss_pred CCchHHHHHHHhcCCCc
Confidence 57999999999999888
No 89
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=22.66 E-value=1e+02 Score=20.67 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=21.0
Q ss_pred eeCCCCCeeEEEEecCCCchHHHHHHHCCCCc
Q 030608 73 VLLPDGTPDIHFRTACGGQKLRDIMLNSNIDL 104 (174)
Q Consensus 73 v~l~dGt~~v~~~ea~~GetLldaal~~GI~L 104 (174)
+.+|||.. . +.+.|.|.+|+|..-+-.+
T Consensus 3 v~lpdG~~-~---~~~~g~T~~d~A~~I~~~l 30 (60)
T PF02824_consen 3 VYLPDGSI-K---ELPEGSTVLDVAYSIHSSL 30 (60)
T ss_dssp EEETTSCE-E---EEETTBBHHHHHHHHSHHH
T ss_pred EECCCCCe-e---eCCCCCCHHHHHHHHCHHH
Confidence 34589975 2 4599999999998866555
No 90
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=22.40 E-value=69 Score=25.75 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=18.7
Q ss_pred HHHHHHHCC---CCccCCCCCCCCCCCCCc--eecccE
Q 030608 93 LRDIMLNSN---IDLYGPYARPLSNCAGGG--TCGTCM 125 (174)
Q Consensus 93 Lldaal~~G---I~L~~p~~k~~~~CGG~G--~CGTC~ 125 (174)
+++.+++.| +++.. -.+|--.+ .||+|.
T Consensus 164 I~~la~~~g~~~~~~~~-----t~sC~~~~~~~CG~C~ 196 (201)
T TIGR00364 164 IVQLADELGVLDLVIKL-----TYSCYAGGGEGCGKCP 196 (201)
T ss_pred HHHHHHHcCCccccHhh-----CCcCCCcCCCCCCCCh
Confidence 788889999 65433 56776433 677773
No 91
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=20.26 E-value=68 Score=18.65 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.3
Q ss_pred CCCchHHHHHHHCCCCc
Q 030608 88 CGGQKLRDIMLNSNIDL 104 (174)
Q Consensus 88 ~~GetLldaal~~GI~L 104 (174)
.+|++|.+++.+.|+..
T Consensus 2 ~~gdtl~~IA~~~~~~~ 18 (44)
T TIGR02899 2 QKGDTLWKIAKKYGVDF 18 (44)
T ss_pred CCCCCHHHHHHHHCcCH
Confidence 57899999999988875
No 92
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=20.16 E-value=84 Score=18.82 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=12.3
Q ss_pred cCCCchHHHHHHHCCCCc
Q 030608 87 ACGGQKLRDIMLNSNIDL 104 (174)
Q Consensus 87 a~~GetLldaal~~GI~L 104 (174)
+.+|+||..++.+.|+..
T Consensus 3 V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 3 VQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp E-TT--HHHHHHHTTS-H
T ss_pred ECcCCcHHHHHhhhhhhH
Confidence 478999999999999875
Done!