Query 030608
Match_columns 174
No_of_seqs 189 out of 1094
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 02:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hui_A Ferredoxin; cytochrome 99.8 4.3E-19 1.5E-23 136.5 9.6 81 59-157 16-125 (126)
2 2y5c_A Adrenodoxin-like protei 99.8 4.7E-19 1.6E-23 130.9 9.2 79 63-156 4-107 (109)
3 2bt6_A Adrenodoxin 1; rutheniu 99.8 5E-19 1.7E-23 130.3 9.0 78 61-153 3-107 (108)
4 3lxf_A Ferredoxin; iron, iron- 99.8 1.3E-18 4.4E-23 128.6 8.6 74 65-156 1-103 (104)
5 3n9z_C Adrenodoxin; cytochrome 99.7 1.7E-19 5.9E-24 138.1 0.1 89 62-163 3-116 (123)
6 3ah7_A [2Fe-2S]ferredoxin; [2F 99.7 1.6E-17 5.4E-22 123.1 9.0 76 64-156 1-103 (113)
7 1uwm_A Ferredoxin VI, FDVI; el 99.7 1.5E-17 5.1E-22 121.8 8.7 76 65-155 1-103 (106)
8 1xlq_A Putidaredoxin, PDX; [2F 99.7 2E-17 6.8E-22 121.2 9.1 75 66-155 2-103 (106)
9 2wlb_A ETP1-FD, electron trans 99.7 6.6E-17 2.2E-21 117.8 9.3 73 63-153 2-102 (103)
10 1b9r_A Protein (terpredoxin); 99.7 1.2E-17 4.1E-22 122.1 4.7 76 65-155 1-103 (105)
11 1i7h_A Ferredoxin; 2Fe-2S,elec 99.7 2E-16 6.9E-21 117.1 8.7 76 65-157 2-104 (111)
12 1a70_A Ferredoxin; iron-sulfur 99.6 7E-16 2.4E-20 111.7 7.2 75 65-159 3-95 (97)
13 1frr_A Ferredoxin I; electron 99.6 1.7E-15 5.8E-20 108.3 7.8 73 65-157 2-92 (95)
14 1czp_A Ferredoxin I; [2Fe-2S] 99.6 2E-15 6.9E-20 109.2 8.3 75 65-157 3-95 (98)
15 1awd_A Ferredoxin; electron tr 99.6 1.5E-15 5.3E-20 109.1 7.1 72 66-157 2-91 (94)
16 1iue_A Ferredoxin; electron tr 99.6 1.3E-15 4.5E-20 110.4 6.4 74 65-158 3-94 (98)
17 1frd_A Heterocyst [2Fe-2S] fer 99.6 4.1E-15 1.4E-19 107.2 8.3 73 65-157 3-95 (98)
18 1wri_A Ferredoxin II, ferredox 99.6 2.6E-15 9E-20 107.9 6.6 72 65-157 2-91 (93)
19 1jq4_A Methane monooxygenase c 99.6 6.2E-16 2.1E-20 111.7 3.0 73 64-155 4-96 (98)
20 1l5p_A Ferredoxin; [2Fe-2S] cl 99.6 4.9E-15 1.7E-19 106.7 7.2 60 77-145 8-87 (93)
21 1krh_A Benzoate 1,2-dioxygenas 99.5 5.8E-14 2E-18 118.4 8.0 74 64-156 3-98 (338)
22 3zyy_X Iron-sulfur cluster bin 99.4 9.2E-14 3.2E-18 130.9 7.6 79 62-161 1-97 (631)
23 1doi_A 2Fe-2S ferredoxin; halo 99.4 5.5E-13 1.9E-17 102.4 6.7 62 76-153 34-115 (128)
24 2pia_A Phthalate dioxygenase r 99.2 9.9E-12 3.4E-16 104.9 7.1 53 86-152 250-320 (321)
25 1kf6_B Fumarate reductase iron 98.3 2.5E-06 8.4E-11 69.6 7.8 69 83-155 26-94 (243)
26 2wdq_B Succinate dehydrogenase 98.2 2.9E-06 9.8E-11 69.0 7.6 70 83-155 23-95 (238)
27 2bs2_B Quinol-fumarate reducta 98.2 3.4E-06 1.2E-10 68.8 7.3 70 83-155 26-95 (241)
28 1t3q_A Quinoline 2-oxidoreduct 98.2 5.5E-06 1.9E-10 65.7 7.9 51 85-142 23-74 (168)
29 3i9v_3 NADH-quinone oxidoreduc 98.2 2.2E-06 7.6E-11 81.2 6.5 57 86-154 12-96 (783)
30 3c8y_A Iron hydrogenase 1; dit 98.2 3.6E-06 1.2E-10 77.5 7.5 56 86-153 12-74 (574)
31 2h88_B Succinate dehydrogenase 98.0 9.2E-06 3.1E-10 67.1 7.1 71 83-156 33-104 (252)
32 3vr8_B Iron-sulfur subunit of 97.9 4.9E-05 1.7E-09 65.3 8.7 71 84-157 58-129 (282)
33 1rm6_C 4-hydroxybenzoyl-COA re 97.7 5.4E-05 1.9E-09 59.9 6.1 57 77-142 10-67 (161)
34 1ffv_A CUTS, iron-sulfur prote 97.7 6E-05 2E-09 60.2 6.3 58 77-142 11-68 (163)
35 1n62_A Carbon monoxide dehydro 97.7 6.2E-05 2.1E-09 60.2 6.3 57 77-141 11-67 (166)
36 3hrd_D Nicotinate dehydrogenas 97.6 9.1E-05 3.1E-09 59.1 5.7 63 65-141 4-67 (160)
37 1vlb_A Aldehyde oxidoreductase 96.2 0.0048 1.6E-07 60.0 5.4 77 66-155 3-80 (907)
38 1dgj_A Aldehyde oxidoreductase 96.1 0.0051 1.7E-07 59.8 5.2 64 86-155 16-80 (907)
39 2w3s_A Xanthine dehydrogenase; 95.8 0.0059 2E-07 55.3 3.8 71 77-155 8-82 (462)
40 3nvw_A Xanthine dehydrogenase/ 95.4 0.0081 2.8E-07 48.1 2.9 58 77-142 10-78 (164)
41 1y56_A Hypothetical protein PH 91.8 0.31 1.1E-05 42.9 6.4 54 86-142 26-81 (493)
42 1ep3_B Dihydroorotate dehydrog 90.3 0.096 3.3E-06 42.1 1.5 43 93-138 206-251 (262)
43 2gag_A Heterotetrameric sarcos 86.7 1.4 4.7E-05 42.6 7.1 61 86-152 33-105 (965)
44 3unc_A Xanthine dehydrogenase/ 82.5 0.54 1.9E-05 47.7 2.4 58 77-141 11-78 (1332)
45 3u7z_A Putative metal binding 70.2 7.1 0.00024 28.7 4.9 34 63-101 7-40 (101)
46 3zyv_A AOH1; oxidoreductase, m 67.7 5.3 0.00018 40.5 4.9 44 77-127 15-58 (1335)
47 1c1y_B Proto-onkogene serine/t 52.8 8.4 0.00029 27.3 2.4 25 73-99 6-30 (77)
48 1wxm_A A-RAF proto-oncogene se 50.1 9.2 0.00031 27.7 2.3 24 74-99 13-36 (86)
49 2l05_A Serine/threonine-protei 48.4 11 0.00036 27.9 2.4 24 74-99 23-46 (95)
50 3ny5_A Serine/threonine-protei 44.9 13 0.00044 27.5 2.4 24 74-99 19-42 (96)
51 1rrb_A RAF-1 RBD, RAF proto-on 35.6 27 0.00091 26.2 2.9 25 73-99 23-47 (107)
52 4gbm_A CURM sulfotransferase; 30.5 29 0.00098 27.8 2.6 18 88-105 42-59 (323)
53 3kdv_A DDRB, DNA damage respon 27.3 60 0.002 26.3 3.9 36 61-102 4-39 (184)
54 2hj1_A Hypothetical protein; s 24.0 53 0.0018 23.6 2.8 37 62-103 12-48 (97)
55 1e0g_A Membrane-bound lytic mu 20.3 44 0.0015 19.4 1.4 19 86-104 6-24 (48)
56 3kwl_A Uncharacterized protein 20.1 2.4E+02 0.0081 25.3 6.8 56 85-156 47-104 (514)
No 1
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.78 E-value=4.3e-19 Score=136.54 Aligned_cols=81 Identities=21% Similarity=0.393 Sum_probs=68.4
Q ss_pred CCCCCeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCC-ccCCCCCCCCCCCCCceecccEEE----------
Q 030608 59 AEEPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVE---------- 127 (174)
Q Consensus 59 ~~~~p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~-L~~p~~k~~~~CGG~G~CGTC~V~---------- 127 (174)
+..+.|++|+|+. ++|.. +.+++.+|+|||++|+++||+ + ++.|+|.|.||||+|+
T Consensus 16 ~~~~~M~~Vt~~~----~~G~~--~~v~~~~G~tLL~aa~~~gi~gi-------~~~C~G~G~CgtC~v~v~~G~~~~l~ 82 (126)
T 3hui_A 16 PRGSHMAKINFVD----HTGET--RTVEVEEGATVMEAAIRNAIPGV-------EAECGGACACATCHVYVDEAWREKVG 82 (126)
T ss_dssp CTTCSEEEEEEEC----TTSCE--EEEEEETTSBHHHHHHTTTCTTC-------CCTTSSSSCCSTTEEEECGGGHHHHC
T ss_pred CCCCCceEEEEEe----CCCCE--EEEEECCCCcHHHHHHHcCCCCC-------ccCCCCCCCCCCCEEEECCCcccccC
Confidence 5677889999987 68854 445789999999999999999 8 7789999999999998
Q ss_pred ---------------cCCCeEEeecceecCCCCCCC---eEEEcCCcc
Q 030608 128 ---------------KPKNWRLACQTTVGTPDSTGL---VVIQQLPEW 157 (174)
Q Consensus 128 ---------------~~~g~RLACQ~~v~~~~~~gd---v~I~~lpe~ 157 (174)
..++||||||+++. +| ++|+++++.
T Consensus 83 ~~~~~E~~~L~~~~e~~~g~RLaCQ~~~~-----~dldgl~V~lp~~~ 125 (126)
T 3hui_A 83 GPSPMEEDMLDFGYDVRPNSRLSCQIKVS-----NELDGLIVTTPERQ 125 (126)
T ss_dssp CCCHHHHHHHTTSSSCCTTEEEGGGCBCC-----GGGTTEEEECCSCC
T ss_pred CCCHHHhhhcCchhhccCCeEEeeeCEEC-----cCCCcEEEEecCcC
Confidence 23689999999999 56 999976553
No 2
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.78 E-value=4.7e-19 Score=130.88 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=64.0
Q ss_pred CeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE---------------
Q 030608 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE--------------- 127 (174)
Q Consensus 63 p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~--------------- 127 (174)
++++|+|+. ++|.. +.+++..|+|||++++++||++ ++.|+|.|.||||+|+
T Consensus 4 ~m~~v~~~~----~~g~~--~~~~~~~g~tlL~aa~~~gi~i-------~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~ 70 (109)
T 2y5c_A 4 DVVNVVFVD----RSGQR--IPVSGRVGDNVLHLAQRHGVDL-------EGACEASLACSTCHVYVSEDHLDLLPPPEER 70 (109)
T ss_dssp CEEEEEEEC----TTSCE--EEEEEETTCBHHHHHHHTTCCC-------CCTTSSSSSCCTTEEEECHHHHTTSCCCCHH
T ss_pred CcEEEEEEc----CCCCE--EEEEECCCCcHHHHHHHcCCCC-------CcCCCCCcCcCccEEEECCcchhhcCCCCHH
Confidence 478888876 78874 4557799999999999999999 7789999999999998
Q ss_pred ----------cCCCeEEeecceecCCCCCCCeEEEcCCc
Q 030608 128 ----------KPKNWRLACQTTVGTPDSTGLVVIQQLPE 156 (174)
Q Consensus 128 ----------~~~g~RLACQ~~v~~~~~~gdv~I~~lpe 156 (174)
..++||||||+++..++ .+++|+++++
T Consensus 71 E~~~L~~~~~~~~g~rLaCq~~~~~d~--~~~~v~ip~~ 107 (109)
T 2y5c_A 71 EDDMLDMAPLLQENSRLGCQIVLTPEL--EGAEFTLPKI 107 (109)
T ss_dssp HHHHHHTSTTCCTTEEEGGGCBCCGGG--TTCEEECCSC
T ss_pred HHHHHhccccCCCCcEeeEEeEEecCC--CeEEEEecCC
Confidence 24689999999999311 1499986543
No 3
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.78 E-value=5e-19 Score=130.31 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=62.5
Q ss_pred CCCeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCC--CCCCCCceecccEEE-----------
Q 030608 61 EPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPL--SNCAGGGTCGTCMVE----------- 127 (174)
Q Consensus 61 ~~p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~--~~CGG~G~CGTC~V~----------- 127 (174)
+..+++|+|.. +||.. +.+++..|+|||++|+++||+| + ++|||.|.||||||+
T Consensus 3 ~~~m~~V~~~~----~~g~~--~~v~~~~g~tLL~aa~~~gi~i-------~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~ 69 (108)
T 2bt6_A 3 SGDKITVHFIN----RDGET--LTTKGKIGDSLLDVVVQNNLDI-------DGFGACEGTLACSTCHLIFEQHIFEKLEA 69 (108)
T ss_dssp --CEEEEEEEC----TTSCE--EEEEEETTCBHHHHHHHTTCCC-------TTTTTTSSSSSBSTTEEECCHHHHTTSCC
T ss_pred CCceEEEEEEC----CCCCE--EEEEECCCChHHHHHHHcCCCC-------CcccCCCCCcCcCCCEEEECccccccCCC
Confidence 34578888886 68863 4567899999999999999999 6 789999999999998
Q ss_pred --------------cCCCeEEeecceecCCCCCCCeEEEc
Q 030608 128 --------------KPKNWRLACQTTVGTPDSTGLVVIQQ 153 (174)
Q Consensus 128 --------------~~~g~RLACQ~~v~~~~~~gdv~I~~ 153 (174)
..++||||||+++..++ .+++|++
T Consensus 70 ~~~~E~~~L~~~~~~~~g~rLaCq~~~~~d~--d~~~V~~ 107 (108)
T 2bt6_A 70 ITDEENDMLDLAYGLTDRSRLGCQICLTKAM--DNMTVRV 107 (108)
T ss_dssp CCHHHHHHHTTCTTCCTTEEEGGGCBCCGGG--TTEEEEC
T ss_pred CCHHHHHHHhCcccCCCCcEeeEEEEecCCC--CCEEEEc
Confidence 23589999999998311 1688874
No 4
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.76 E-value=1.3e-18 Score=128.62 Aligned_cols=74 Identities=31% Similarity=0.508 Sum_probs=63.0
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCC-ccCCCCCCCCCCCCCceecccEEE----------------
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVE---------------- 127 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~-L~~p~~k~~~~CGG~G~CGTC~V~---------------- 127 (174)
++|+|+. +||.. +.+++.+|+|||++|+++||+ + ++.|+|.|.||||+|+
T Consensus 1 ~~vt~~~----~~G~~--~~~~~~~g~tll~a~~~~gi~~i-------~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e 67 (104)
T 3lxf_A 1 TAILVTT----RDGTR--TEIQAEPGLSLMEALRDAGIDEL-------LALCGGCCSCATCHVLVAPAFADRLPALSGDE 67 (104)
T ss_dssp CEEEEEC----TTSCE--EEEECCTTSBHHHHHHHTTCTTC-------CCTTCSSSSCSTTEEEECGGGGGGSCCCCHHH
T ss_pred CEEEEEe----CCCCE--EEEEECCCChHHHHHHHcCCCCC-------CcCCCCCCCCCCCEEEECCcccccCCCCCHHH
Confidence 3678887 88874 566889999999999999999 8 7789999999999998
Q ss_pred ---------cCCCeEEeecceecCCCCCCC---eEEEcCCc
Q 030608 128 ---------KPKNWRLACQTTVGTPDSTGL---VVIQQLPE 156 (174)
Q Consensus 128 ---------~~~g~RLACQ~~v~~~~~~gd---v~I~~lpe 156 (174)
..++||||||+++. +| ++|+++++
T Consensus 68 ~~~L~~~~~~~~g~rLaCq~~~~-----~dl~gl~v~ip~~ 103 (104)
T 3lxf_A 68 NDLLDSSDHRTPHSRLSCQITIN-----DKLEGLEVEIAPE 103 (104)
T ss_dssp HHHHHTSTTCCTTEEEGGGCBCC-----GGGTTCEEEECCC
T ss_pred HHHhccccccCCCcEEEeeCEEc-----cCCCCEEEEecCC
Confidence 23589999999999 56 99996643
No 5
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.73 E-value=1.7e-19 Score=138.12 Aligned_cols=89 Identities=21% Similarity=0.392 Sum_probs=17.4
Q ss_pred CCeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE--------------
Q 030608 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE-------------- 127 (174)
Q Consensus 62 ~p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~-------------- 127 (174)
.-+++|+|+. +||.. +.+++..|+|||++++++||+|++ .+.|||.|.||||||+
T Consensus 3 ~~~v~Vtf~~----~~G~~--~~v~~~~G~tLl~aa~~~gi~i~g-----~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~ 71 (123)
T 3n9z_C 3 EDKITVHFIN----RDGET--LTTKGKVGDSLLDVVVENNLDIDG-----FGACEGTLACSTCHLIFEDHIYEKLDAITD 71 (123)
T ss_dssp ---------------------------------------------------CTTCSSSSCSTTBC--------------C
T ss_pred CCcEEEEEEe----CCCCE--EEEEECCCCcHHHHHHHcCCCCCc-----CCCCCCCCEeCCCeeEEeccccccCCCCCh
Confidence 3567888887 78864 456789999999999999999931 1689999999999997
Q ss_pred -----------cCCCeEEeecceecCCCCCCCeEEEcCCccccceee
Q 030608 128 -----------KPKNWRLACQTTVGTPDSTGLVVIQQLPEWKGHEWK 163 (174)
Q Consensus 128 -----------~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~k~~~~~ 163 (174)
..++||||||+++.. ...+++|+++++....++.
T Consensus 72 ~E~~~L~~~~~~~~~~RLaCQ~~v~~--~ld~l~V~ip~~~~~~~~~ 116 (123)
T 3n9z_C 72 EENDMLDLAYGLTDRSRLGCQICLTK--SMDNMTVRVPETVADARQS 116 (123)
T ss_dssp HHHHHHCC--------CBCC---------------------------
T ss_pred HHHhhhcccccccCCeEEeeEeEEcc--CCCCEEEEECcccccccee
Confidence 235899999999992 1138999987766554443
No 6
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.72 E-value=1.6e-17 Score=123.14 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=60.2
Q ss_pred eeEEEEeeeeeCCCC---CeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-------------
Q 030608 64 VVNFAFVHSVLLPDG---TPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE------------- 127 (174)
Q Consensus 64 ~v~~~f~~~v~l~dG---t~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~------------- 127 (174)
|++|+|.. .|| .- +.+++.+|+|||++|+++||+| ++.|+|.|.||+|+|+
T Consensus 1 M~~vt~~~----~~g~~~~~--~~v~~~~g~tlL~aa~~~Gi~i-------~~~C~g~G~CgtC~v~v~~G~~~~~~~~~ 67 (113)
T 3ah7_A 1 MPLVTFLP----HEKFCPEG--LTVEVKPGTNILELAHDHHIEM-------ESACGGVKACTTCHCIVRKGFDSLEEADE 67 (113)
T ss_dssp CCEEEECC----BTTTBTTC--EEEECCTTCBHHHHHHHTTCCC-------CCTTCSSSSCSTTEEEEEESGGGSCCCCH
T ss_pred CCEEEEEc----CCCcCCCC--eEEEECCCCcHHHHHHHcCCCC-------CcCCCCCCCcCCCEEEEcCCcccCCCCCH
Confidence 34667776 444 21 3447799999999999999999 7789999999999998
Q ss_pred -----------cCCCeEEeecceecCCCCCCCeEEEcCCc
Q 030608 128 -----------KPKNWRLACQTTVGTPDSTGLVVIQQLPE 156 (174)
Q Consensus 128 -----------~~~g~RLACQ~~v~~~~~~gdv~I~~lpe 156 (174)
...+||||||+++.. +|++|+++++
T Consensus 68 ~e~~~L~~~~~~~~g~rLaCq~~~~~----~dl~v~~~~~ 103 (113)
T 3ah7_A 68 LEEDMLDKAWGLEAQSRLGCQVFVAD----EDLTIEIPKY 103 (113)
T ss_dssp HHHHHHTTSTTCCTTEEEGGGCBCCS----SCEEEECCSC
T ss_pred HHHHhhhcccccCCCcEEeeeCEEeC----CCEEEEECch
Confidence 134799999999973 5999996544
No 7
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.72 E-value=1.5e-17 Score=121.80 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=60.6
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCC-ccCCCCCCCCCCCCCceecccEEE----------------
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVE---------------- 127 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~-L~~p~~k~~~~CGG~G~CGTC~V~---------------- 127 (174)
++|+|+. ++|.. +.+++.+|+|||++|+++||+ + ++.|+|.|.||||+|+
T Consensus 1 ~~v~~~~----~~g~~--~~~~~~~g~tlL~aa~~~gi~~i-------~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e 67 (106)
T 1uwm_A 1 AKIIFIE----HNGTR--HEVEAKPGLTVMEAARDNGVPGI-------DADCGGACACSTCHAYVDPAWVDKLPKALPTE 67 (106)
T ss_dssp CEEEEEC----TTCCE--EEEECCTTSBHHHHHHTTTCTTC-------CCTTSSSSSSCTTEEEECHHHHTTSCCCCHHH
T ss_pred CEEEEEe----CCCCE--EEEEECCCCcHHHHHHHcCCCCc-------ccCCCCCCCcCcCEEEECCcccccCCCCCHHH
Confidence 3566765 67753 455789999999999999999 8 7789999999999998
Q ss_pred ---------cC-CCeEEeecceecCCCCCCCeEEEcCC
Q 030608 128 ---------KP-KNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 128 ---------~~-~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
.. ++|||+||+++..++ .+++|++++
T Consensus 68 ~~~L~~~~~~~~~g~rLaCq~~~~~d~--~~l~v~~p~ 103 (106)
T 1uwm_A 68 TDMIDFAYEPNPATSRLTCQIKVTSLL--DGLVVHLPE 103 (106)
T ss_dssp HHHHTTSSSCCTTTEEEGGGCBCCGGG--TTEEEECCS
T ss_pred HHHhcCccccCCCCcEecccCEEccCC--CCEEEEecC
Confidence 12 789999999999311 169998643
No 8
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.72 E-value=2e-17 Score=121.16 Aligned_cols=75 Identities=25% Similarity=0.457 Sum_probs=60.3
Q ss_pred EEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCC-ccCCCCCCCCCCCCCceecccEEE-----------------
Q 030608 66 NFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVE----------------- 127 (174)
Q Consensus 66 ~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~-L~~p~~k~~~~CGG~G~CGTC~V~----------------- 127 (174)
+|+|+. ++|.. +.+++.+|+|||++|+++||+ + ++.|+|.|.||||+|+
T Consensus 2 ~V~~~~----~~g~~--~~~~~~~g~tlLeaa~~~gi~~i-------~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~ 68 (106)
T 1xlq_A 2 KVVYVS----HDGTR--RELDVADGVSLMQAAVSNGIYDI-------VGDCGGSASCATCHVYVNEAFTDKVPAANEREI 68 (106)
T ss_dssp EEEEEC----TTSCE--EEEECCTTCBHHHHHHHTTCTTS-------CCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHH
T ss_pred EEEEEe----CCCCE--EEEEECCCCcHHHHHHHcCCCCC-------CcCCCCCcccCcCEEEECCcccccCCCCCHHHH
Confidence 566655 67753 455789999999999999999 8 7889999999999998
Q ss_pred --------c-CCCeEEeecceecCCCCCCCeEEEcCC
Q 030608 128 --------K-PKNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 128 --------~-~~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
. .++|||+||+++..++ .+++|++++
T Consensus 69 ~~L~~~~~~~~~g~rLaCq~~~~~d~--~~l~v~~p~ 103 (106)
T 1xlq_A 69 GMLESVTAELKPNSRLCCQIIMTPEL--DGIVVDVPD 103 (106)
T ss_dssp HHHTTCSSCCCTTEEEGGGCBCCGGG--TTEEEECCS
T ss_pred HHhhcccccCCCCcEeeeeeEeecCC--CCEEEEecC
Confidence 1 5679999999999311 169998643
No 9
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.70 E-value=6.6e-17 Score=117.83 Aligned_cols=73 Identities=27% Similarity=0.483 Sum_probs=60.1
Q ss_pred CeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE---------------
Q 030608 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE--------------- 127 (174)
Q Consensus 63 p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~--------------- 127 (174)
+.++|+|.. .+|.. +.+++..|+|||++|+++||++ ++.|+|.|.||+|+|+
T Consensus 2 ~~~~v~~~~----~~g~~--~~~~~~~g~tlL~a~~~~gi~i-------~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~ 68 (103)
T 2wlb_A 2 TGIKVFFVT----PEGRE--IMIEGNEGDSILDLAHANNIDL-------EGACEGSVACSTCHVIVDPEHYELLDPPEED 68 (103)
T ss_dssp CCEEEEEEC----TTCCE--EEEEECTTCBHHHHHHHTTCCC-------CCTTTTSSCCSTTEEEECHHHHHHSCCCCHH
T ss_pred CceEEEEEe----CCCCE--EEEEECCCCHHHHHHHHcCCCc-------CcCCCCCCCcCCCEEEECCCchhccCCCCHH
Confidence 456777774 57753 3457799999999999999998 7789999999999998
Q ss_pred ----------cCCCeEEeecceecCCCCCCC---eEEEc
Q 030608 128 ----------KPKNWRLACQTTVGTPDSTGL---VVIQQ 153 (174)
Q Consensus 128 ----------~~~g~RLACQ~~v~~~~~~gd---v~I~~ 153 (174)
..++|||+||+++. +| ++|++
T Consensus 69 E~~~L~~~~~~~~g~rLaCq~~~~-----~d~~~l~v~l 102 (103)
T 2wlb_A 69 EEDMLDLAFGLEETSRLGCQVLLR-----KDLDGIRVRI 102 (103)
T ss_dssp HHHHHTTBTTCCTTEEEGGGCBCC-----GGGTTEEEEC
T ss_pred HHHHHhcccCCCCCcEeeEeeEeC-----CCCCcEEEEc
Confidence 13579999999999 66 88874
No 10
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.69 E-value=1.2e-17 Score=122.14 Aligned_cols=76 Identities=20% Similarity=0.410 Sum_probs=60.0
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCC-ccCCCCCCCCCCCCCceecccEEE----------------
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVE---------------- 127 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~-L~~p~~k~~~~CGG~G~CGTC~V~---------------- 127 (174)
++|+|+. ++|.. +.+++..|+|||++|+++||+ + ++.|+|.|.||||+|+
T Consensus 1 ~~V~~~~----~~g~~--~~~~~~~g~tlL~aa~~~gi~~i-------~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e 67 (105)
T 1b9r_A 1 PRVVFID----EQSGE--YAVDAQDGQSLMEVATQNGVPGI-------VAECGGSCVCATCRIEIEDAWVEIVGEANPDE 67 (105)
T ss_dssp CEEEECC----TTTSC--EEEECCTTCCTTHHHHHHTCCCC-------CCSSTTSSCCCCCCCEECTTTHHHHTCCCTTH
T ss_pred CEEEEEe----CCCCE--EEEEECCCChHHHHHHHcCCCCc-------CcCCCCCCCcCcCEEEECCcccccCCCCCHHH
Confidence 3567755 67753 345789999999999999999 8 7789999999999998
Q ss_pred ----------cCCCeEEeecceecCCCCCCCeEEEcCC
Q 030608 128 ----------KPKNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 128 ----------~~~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
+.++|||+||+++..++ .+++|++++
T Consensus 68 ~~~L~~~~~~~~~g~rLaCq~~~~~~~--~~l~v~~p~ 103 (105)
T 1b9r_A 68 NDLLQSTGEPMTAGTRLSCQVFIDPSM--DGLIVRVPL 103 (105)
T ss_dssp HHHHHTSCCCCCTTBSCGGGCCCCTTS--TTEEEECCS
T ss_pred HHHhhcccccCCCCcEeeeeCEecCCC--CcEEEEecC
Confidence 12469999999999311 179999654
No 11
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.67 E-value=2e-16 Score=117.05 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=59.3
Q ss_pred eEEEEeeeeeCCCC---CeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE--------------
Q 030608 65 VNFAFVHSVLLPDG---TPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE-------------- 127 (174)
Q Consensus 65 v~~~f~~~v~l~dG---t~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~-------------- 127 (174)
++|+|.. .+| .- ..+++.+|+|||++|+++||.+ ++.|+|.|.||+|+|+
T Consensus 2 ~~i~~~~----~~g~~~~~--~~~~~~~g~tlL~a~~~~gi~i-------~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~ 68 (111)
T 1i7h_A 2 PKIVILP----HQDLCPDG--AVLEANSGETILDAALRNGIEI-------EHACEKSCACTTCHCIVREGFDSLPESSEQ 68 (111)
T ss_dssp CEEEECC----BTTTBTTC--EEEECCTTCBHHHHHHHTTCCC-------CCTTSSSSCCSTTEEEEEECGGGSCCCCHH
T ss_pred CEEEEEe----CCCcCCCC--eEEEeCCCCcHHHHHHHcCCCC-------cccCCCCCcCCCCEEEEccCcccCCCCCHH
Confidence 4666665 443 21 2346799999999999999998 7789999999999998
Q ss_pred ----------cCCCeEEeecceecCCCCCCCeEEEcCCcc
Q 030608 128 ----------KPKNWRLACQTTVGTPDSTGLVVIQQLPEW 157 (174)
Q Consensus 128 ----------~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~ 157 (174)
...++||+||+++.. +|++|+++++.
T Consensus 69 e~~~L~~~~~~~~g~rLaCq~~~~~----~dl~v~~~~~~ 104 (111)
T 1i7h_A 69 EDDMLDKAWGLEPESRLSCQARVTD----EDLVVEIPRYT 104 (111)
T ss_dssp HHHHHTTCTTCCTTEEETTTCBCCS----SCEEEECCSCC
T ss_pred HHHHhhhccccCCCcEEEEEEEEeC----CCEEEEEChHH
Confidence 014799999999953 69999965543
No 12
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.62 E-value=7e-16 Score=111.71 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=59.9
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-----------------
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE----------------- 127 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~----------------- 127 (174)
.+|+|.. ++|.. .+++.+|+|||++|+++||.+ ++.|+ .|.||+|+|+
T Consensus 3 ~~v~~~~----~~~~~---~~~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~ 67 (97)
T 1a70_A 3 YKVTLVT----PTGNV---EFQCPDDVYILDAAEEEGIDL-------PYSCR-AGSCSSCAGKLKTGSLNQDDQSFLDDD 67 (97)
T ss_dssp EEEEEEE----TTEEE---EEEEETTSCHHHHHHHTTCCC-------CCSSS-SSCSSTTEEEEEESCEECTTCCSSCHH
T ss_pred EEEEEEe----CCceE---EEEeCCCCcHHHHHHHcCCCc-------ccCCC-CcCCCCCeEEEccCCcCccccccCCHH
Confidence 3555654 56633 336689999999999999998 77898 9999999998
Q ss_pred -cCCCeEEeecceecCCCCCCCeEEEcCCcccc
Q 030608 128 -KPKNWRLACQTTVGTPDSTGLVVIQQLPEWKG 159 (174)
Q Consensus 128 -~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~k~ 159 (174)
..+++||+||+++. +|++|++.++.+.
T Consensus 68 e~~~g~~LaCq~~~~-----~d~~v~~~~~~~~ 95 (97)
T 1a70_A 68 QIDEGWVLTCAAYPV-----SDVTIETHKKEEL 95 (97)
T ss_dssp HHHHTEEEGGGCEES-----SCEEEECCCGGGC
T ss_pred HhhCCeEEEeECEEC-----CCEEEEeCchhhc
Confidence 12479999999999 7899997765543
No 13
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.60 E-value=1.7e-15 Score=108.27 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=58.7
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEc----------------
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEK---------------- 128 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~---------------- 128 (174)
.+|+|.. ++|.. .+++.+|+|||++|+++||++ ++.|+ .|.||+|+|+.
T Consensus 2 ~~v~~~~----~~g~~---~~~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~~~~~L~~~ 66 (95)
T 1frr_A 2 YKTVLKT----PSGEF---TLDVPEGTTILDAAEEAGYDL-------PFSCR-AGACSSCLGKVVSGSVDESEGSFLDDG 66 (95)
T ss_dssp EEEEEEE----TTEEE---EEEECTTCCHHHHHHHTTCCC-------CCSSS-SSSSSTTEEEEEESCEECTTCCSCCHH
T ss_pred eEEEEEe----CCCcE---EEEeCCCCcHHHHHHHcCCCC-------CCCCC-CcCCCCCEEEEEeCCccccccccCCHH
Confidence 3455553 56633 346699999999999999998 77898 99999999981
Q ss_pred --CCCeEEeecceecCCCCCCCeEEEcCCcc
Q 030608 129 --PKNWRLACQTTVGTPDSTGLVVIQQLPEW 157 (174)
Q Consensus 129 --~~g~RLACQ~~v~~~~~~gdv~I~~lpe~ 157 (174)
..++||+||+++. +|++|++.++.
T Consensus 67 ~~~~g~~LaC~~~~~-----~~~~v~~~~~~ 92 (95)
T 1frr_A 67 QMEEGFVLTCIAIPE-----SDLVIETHKEE 92 (95)
T ss_dssp HHHTTEEETTTCEES-----SCEEEECCCTT
T ss_pred HHhCCcEEeeECEEC-----CCEEEEEcchh
Confidence 2579999999999 79999976543
No 14
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.60 E-value=2e-15 Score=109.24 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=59.7
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-----------------
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE----------------- 127 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~----------------- 127 (174)
.+|+|.. ++|... +.+++.+|++||++++++||.+ ++.|+ .|.||+|+|+
T Consensus 3 ~~V~~~~----~~~~~~-~~~~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~ 69 (98)
T 1czp_A 3 FKVTLIN----EAEGTK-HEIEVPDDEYILDAAEEQGYDL-------PFSCR-AGACSTCAGKLVSGTVDQSDQSFLDDD 69 (98)
T ss_dssp EEEEEEE----TTTTEE-EEEEEETTSCHHHHHHHTTCCC-------CCSSS-SSSSSTTEEEEEESCEECTTCCSSCHH
T ss_pred eEEEEEe----CCCCCc-EEEEeCCCCCHHHHHHHcCCCc-------cCCCC-CCCCCCCeEEEccCCcCccccccCCHH
Confidence 4666765 666211 2336699999999999999998 77898 9999999998
Q ss_pred -cCCCeEEeecceecCCCCCCCeEEEcCCcc
Q 030608 128 -KPKNWRLACQTTVGTPDSTGLVVIQQLPEW 157 (174)
Q Consensus 128 -~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~ 157 (174)
..+++||+||+++. +|++|++.++.
T Consensus 70 e~~~g~~LaCq~~~~-----~d~~v~~~~~~ 95 (98)
T 1czp_A 70 QIEAGYVLTCVAYPT-----SDVVIQTHKEE 95 (98)
T ss_dssp HHHTTEEEGGGCEES-----SCEEEECCCTT
T ss_pred HhhCCeEEeeeCEEC-----CCEEEEecccc
Confidence 12579999999999 89999976554
No 15
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.60 E-value=1.5e-15 Score=109.12 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=58.5
Q ss_pred EEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE------------------
Q 030608 66 NFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE------------------ 127 (174)
Q Consensus 66 ~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~------------------ 127 (174)
+|+|.. ++|.. .+++.+|+|||++|+++||.+ ++.|+ .|.||+|+|+
T Consensus 2 ~v~~~~----~~g~~---~~~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~e 66 (94)
T 1awd_A 2 KVTLKT----PSGEE---TIECPEDTYILDAAEEAGLDL-------PYSCR-AGACSSCAGKVESGEVDQSDQSFLDDAQ 66 (94)
T ss_dssp EEEEEE----TTEEE---EEECCTTSCHHHHHHHTTCCC-------CCSSS-SSSSSTTEEEEEESCEECTTCCSSCHHH
T ss_pred EEEEEe----CCCcE---EEEECCCCcHHHHHHHcCCCC-------CcCCC-CCcCCCCEEEEEeCCcCccccccCCHHH
Confidence 355554 56633 346799999999999999998 77898 9999999998
Q ss_pred cCCCeEEeecceecCCCCCCCeEEEcCCcc
Q 030608 128 KPKNWRLACQTTVGTPDSTGLVVIQQLPEW 157 (174)
Q Consensus 128 ~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~ 157 (174)
..+++||+||+++. +|++|++.++.
T Consensus 67 ~~~g~~LaCq~~~~-----~d~~i~~~~~~ 91 (94)
T 1awd_A 67 MGKGFVLTCVAYPT-----SDVTILTHQEA 91 (94)
T ss_dssp HHTTEEEGGGCEES-----SCEEEECCCGG
T ss_pred HhCCcEEeeECEEC-----CCEEEEecchh
Confidence 12579999999999 79999976654
No 16
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.59 E-value=1.3e-15 Score=110.41 Aligned_cols=74 Identities=24% Similarity=0.377 Sum_probs=59.4
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-----------------
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE----------------- 127 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~----------------- 127 (174)
.+|+|.. ++|.. .+++.+|++||++++++||.+ ++.|+ .|.||+|+|+
T Consensus 3 ~~v~~~~----~~~~~---~~~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~ 67 (98)
T 1iue_A 3 YNITLRT----NDGEK---KIECNEDEYILDASERQNVEL-------PYSCR-GGSCSTCAAKLVEGEVDNDDQSYLDEE 67 (98)
T ss_dssp EEEEEEE----TTEEE---EEEEETTSCHHHHHHHTTCCC-------CCSSC-SSSSSTTEEEEEESCEECTTCCSSCHH
T ss_pred EEEEEEe----CCCeE---EEEeCCCCcHHHHHHHcCCCC-------CCCCC-CCcCCCCEEEEeeCCccccccccCCHH
Confidence 3455554 55533 346699999999999999998 77898 9999999998
Q ss_pred -cCCCeEEeecceecCCCCCCCeEEEcCCccc
Q 030608 128 -KPKNWRLACQTTVGTPDSTGLVVIQQLPEWK 158 (174)
Q Consensus 128 -~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~k 158 (174)
..+++||+||+++. +|++|++.++.+
T Consensus 68 e~~~g~~LaCq~~~~-----~d~~i~~~~~~~ 94 (98)
T 1iue_A 68 QIKKKYILLCTCYPK-----SDCVIETHKEDE 94 (98)
T ss_dssp HHHTTEEEGGGCEES-----SCEEEECCCHHH
T ss_pred HHhCCeEEEeECEEC-----CCeEEEeCChHh
Confidence 12579999999999 799999766544
No 17
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.58 E-value=4.1e-15 Score=107.21 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=58.6
Q ss_pred eEEEEeeeeeCCCC--CeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEc--------------
Q 030608 65 VNFAFVHSVLLPDG--TPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEK-------------- 128 (174)
Q Consensus 65 v~~~f~~~v~l~dG--t~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~-------------- 128 (174)
.+|+|.. +++ .. .+++.+|+|||++|+++||++ ++.|+ .|.||+|+|+.
T Consensus 3 ~~V~~~~----~~~~~~~---~~~~~~g~tlL~a~~~~gi~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~ 67 (98)
T 1frd_A 3 YQVRLIN----KKQDIDT---TIEIDEETTILDGAEENGIEL-------PFSCH-SGSCSSCVGKVVEGEVDQSDQIFLD 67 (98)
T ss_dssp EEEEEEE----TTTTEEE---EEEEETTSCHHHHHHHTTCCC-------CCSSS-SSSSSTTEEEEEESCEECTTCCSCC
T ss_pred eEEEEEe----CCCCCCE---EEEeCCCCcHHHHHHHcCCCc-------ccCCC-CCCCCCCEEEEEeCCccccccccCC
Confidence 4566664 564 33 346699999999999999998 77898 99999999981
Q ss_pred ----CCCeEEeecceecCCCCCCCeEEEcCCcc
Q 030608 129 ----PKNWRLACQTTVGTPDSTGLVVIQQLPEW 157 (174)
Q Consensus 129 ----~~g~RLACQ~~v~~~~~~gdv~I~~lpe~ 157 (174)
..++||+||+++. +|++|++.++.
T Consensus 68 ~~e~~~g~~LaC~~~~~-----~d~~v~~~~~~ 95 (98)
T 1frd_A 68 DEQMGKGFALLCVTYPR-----SNCTIKTHQEP 95 (98)
T ss_dssp HHHHHTTEEEGGGCEES-----SSEEEECCCGG
T ss_pred HHHhhCCcEEEeECEEC-----CCEEEEecchh
Confidence 1579999999999 89999976543
No 18
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.58 E-value=2.6e-15 Score=107.91 Aligned_cols=72 Identities=28% Similarity=0.426 Sum_probs=57.8
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-----------------
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE----------------- 127 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~----------------- 127 (174)
.+|+|.. ++|.. .+++.+|+|||++|+++| .+ ++.|+ .|.||+|+|+
T Consensus 2 ~~V~~~~----~~~~~---~~~~~~g~tlL~a~~~~g-~i-------~~~C~-~G~Cg~C~v~v~~G~~~~~e~~~L~~~ 65 (93)
T 1wri_A 2 YKVTLKT----PDGDI---TFDVEPGERLIDIGSEKA-DL-------PLSCQ-AGACSTCLGKIVSGTVDQSEGSFLDDE 65 (93)
T ss_dssp EEEEEEE----TTEEE---EEEECTTSCHHHHHHHHS-CC-------CCSSS-SSSSSTTEEEEEESCEECTTCCSCCHH
T ss_pred EEEEEEE----CCCeE---EEEECCCCcHHHHHHHCc-CC-------CCCCC-CCCCCCCEEEEecCccCccccccCCHH
Confidence 3566654 56633 346699999999999999 88 77898 9999999998
Q ss_pred -cCCCeEEeecceecCCCCCCCeEEEcCCcc
Q 030608 128 -KPKNWRLACQTTVGTPDSTGLVVIQQLPEW 157 (174)
Q Consensus 128 -~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~ 157 (174)
..++|||+||+++. +|++|+++++.
T Consensus 66 ~~~~g~~LaCq~~~~-----~d~~v~~~~~~ 91 (93)
T 1wri_A 66 QIEQGYVLTCIAIPE-----SDVVIETHKED 91 (93)
T ss_dssp HHHTTEEETTTCEES-----SCEEEECCCGG
T ss_pred HHhCCcEEeeeCEEC-----CCEEEEecccc
Confidence 12689999999999 78999976543
No 19
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.57 E-value=6.2e-16 Score=111.75 Aligned_cols=73 Identities=25% Similarity=0.290 Sum_probs=58.5
Q ss_pred eeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEc-----C---------
Q 030608 64 VVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEK-----P--------- 129 (174)
Q Consensus 64 ~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~-----~--------- 129 (174)
+++|+|.. +||.- ..+++.+|++||++|+++||.+ ++.| |.|.||+|+|+. .
T Consensus 4 ~~~v~~~~----~~~~~--~~~~~~~g~tlL~a~~~~gi~i-------~~~C-~~G~Cg~C~v~v~~G~~~~~~~e~~~L 69 (98)
T 1jq4_A 4 VHTITAVT----EDGES--LRFECRSDEDVITAALRQNIFL-------MSSC-REGGCATCKALCSEGDYDLKGCSVQAL 69 (98)
T ss_dssp EEEEEEEE----TTTEE--EEEEEESCCTHHHHHHHHTCCC-------CCSC-CSSCCCCCCBCEEECCCCCCCSCTTTS
T ss_pred cEEEEEEe----cCCCc--EEEEeCCCChHHHHHHHcCCCC-------cCCC-CCCCCCCCEEEEEcCccccCccccccc
Confidence 46677765 56543 3457789999999999999998 7789 699999999981 1
Q ss_pred ------CCeEEeecceecCCCCCCCeEEEcCC
Q 030608 130 ------KNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 130 ------~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
+++||+||+++. +|++|++.+
T Consensus 70 ~~~~~~~g~~LaCq~~~~-----~d~~v~~~~ 96 (98)
T 1jq4_A 70 PPEEEEEGLVLLCRTYPK-----TDLEIELPY 96 (98)
T ss_dssp CHHHHHHHCBCTTTCCSS-----CCSEEECSC
T ss_pred CHHHhcCCcEEEeeCEEC-----CCEEEEecC
Confidence 258999999999 789998643
No 20
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.57 E-value=4.9e-15 Score=106.70 Aligned_cols=60 Identities=25% Similarity=0.505 Sum_probs=50.6
Q ss_pred CCCeeEEEEecCCCchHHHHHHHCCCC-ccCCCCCCCCCCCCCceecccEEE-------------------cCCCeEEee
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNSNID-LYGPYARPLSNCAGGGTCGTCMVE-------------------KPKNWRLAC 136 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~GI~-L~~p~~k~~~~CGG~G~CGTC~V~-------------------~~~g~RLAC 136 (174)
+|.. +.+++.+|++||++|+++||+ + ++.|+|.|.||+|+|+ ..++|||+|
T Consensus 8 ~g~~--~~~~~~~g~tll~a~~~~gi~gi-------~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~~~~~g~rLaC 78 (93)
T 1l5p_A 8 GGVK--KQLKFEDDQTLFTVLTEAGLMSA-------DDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLAC 78 (93)
T ss_dssp TTEE--EEEECCTTEEHHHHHHTTTSSCC-------TTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHTTSCTTEEEGG
T ss_pred CCcE--EEEEECCCChHHHHHHHcCCCcC-------CcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhcCCCCCcEEee
Confidence 6653 445789999999999999999 8 7789999999999998 145799999
Q ss_pred cceecCCCC
Q 030608 137 QTTVGTPDS 145 (174)
Q Consensus 137 Q~~v~~~~~ 145 (174)
|+++..++.
T Consensus 79 q~~~~~d~~ 87 (93)
T 1l5p_A 79 AITLSGEND 87 (93)
T ss_dssp GCEECGGGT
T ss_pred ECEECCCCC
Confidence 999985543
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.48 E-value=5.8e-14 Score=118.41 Aligned_cols=74 Identities=27% Similarity=0.450 Sum_probs=60.0
Q ss_pred eeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEc---------------
Q 030608 64 VVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEK--------------- 128 (174)
Q Consensus 64 ~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~--------------- 128 (174)
+++|+|.. .||.. +.+++.+|+|||++|+++||++ ++.|+ .|.||+|+|+.
T Consensus 3 ~~~v~~~~----~~~~~--~~~~~~~g~tll~a~~~~gi~i-------~~~C~-~g~Cg~C~v~v~~G~~~~~~~~~~~~ 68 (338)
T 1krh_A 3 NHQVALQF----EDGVT--RFICIAQGETLSDAAYRQQINI-------PMDCR-EGECGTCRAFCESGNYDMPEDNYIED 68 (338)
T ss_dssp CEEEEEEC----TTSCE--EEEEECTTCCHHHHHHHTTCCC-------SCSCS-SSSSCTTEEEEEECCEECCGGGSCTT
T ss_pred ceEEEEEE----cCCCc--EEEEeCCCCcHHHHHHHcCCCc-------ccCCC-CcCCCCCEEEEecCcEecccCccccc
Confidence 45666664 45543 4557899999999999999999 77898 99999999981
Q ss_pred -------CCCeEEeecceecCCCCCCCeEEEcCCc
Q 030608 129 -------PKNWRLACQTTVGTPDSTGLVVIQQLPE 156 (174)
Q Consensus 129 -------~~g~RLACQ~~v~~~~~~gdv~I~~lpe 156 (174)
.+++||+||+++. +|++|++.++
T Consensus 69 ~l~~~~~~~g~~LaCq~~~~-----~~~~v~~~~~ 98 (338)
T 1krh_A 69 ALTPEEAQQGYVLACQCRPT-----SDAVFQIQAS 98 (338)
T ss_dssp TCCHHHHHHTEEETTTCEES-----SSEEEEESSC
T ss_pred cCCHHHHhCCeEEEEeCEEC-----CCeEEEEecc
Confidence 1257999999999 7899998664
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.45 E-value=9.2e-14 Score=130.85 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=64.0
Q ss_pred CCeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE--------------
Q 030608 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE-------------- 127 (174)
Q Consensus 62 ~p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~-------------- 127 (174)
|.|++|+|.. +|. .+++.+|+|||++++++||++ ++.|+|.|.||||+|+
T Consensus 1 M~m~~V~~~~-----sg~----~v~v~~G~tLLeAa~~aGi~i-------p~~C~G~G~CGtC~v~V~~G~v~~~e~~~L 64 (631)
T 3zyy_X 1 MAEYKVLFKP-----DQK----EVAISENTNLMEALNLAGINI-------KTVCGGAGTCGKCLVRVVDGQKRVESYGKL 64 (631)
T ss_dssp --CEEEEEET-----TTE----EEEECTTSCHHHHHHHHTCCC-------CCSCCCSSCCSTTEEEEEESCEEESCCTTC
T ss_pred CCceEEEEec-----CCe----EEEECCCCcHHHHHHHcCCCC-------CcCCCCCCcCCCCEEEEeeCcccccccccC
Confidence 3567777764 553 236699999999999999999 7789999999999998
Q ss_pred ----cCCCeEEeecceecCCCCCCCeEEEcCCccccce
Q 030608 128 ----KPKNWRLACQTTVGTPDSTGLVVIQQLPEWKGHE 161 (174)
Q Consensus 128 ----~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~k~~~ 161 (174)
+.+++||+||+++. +|++|+++++.+.++
T Consensus 65 s~~e~~~G~rLaCqa~~~-----sDl~Ielp~~~~~~~ 97 (631)
T 3zyy_X 65 KQEEIAQGYVLACQTYPE-----SDLIIEIPFDSRLTQ 97 (631)
T ss_dssp CHHHHHTTEEETTTEEEC-----SSEEEECCTTSSCSS
T ss_pred CHHHhcCCcEEeeeCEEC-----CCEEEEecchhhhhh
Confidence 23689999999999 899999877766443
No 23
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.38 E-value=5.5e-13 Score=102.39 Aligned_cols=62 Identities=21% Similarity=0.303 Sum_probs=51.4
Q ss_pred CCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-------------------cCCCeEEee
Q 030608 76 PDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE-------------------KPKNWRLAC 136 (174)
Q Consensus 76 ~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~-------------------~~~g~RLAC 136 (174)
.+|.. .+++.+|+|||++|+++||++ ++.| |.|.||+|+|+ ...++||+|
T Consensus 34 ~~g~~---~v~v~~g~tlL~aa~~~Gi~i-------~~~C-~~G~CgtC~v~v~~G~v~~~e~~~L~~~e~~~~g~rLaC 102 (128)
T 1doi_A 34 DEDYG---SLEVNEGEYILEAAEAQGYDW-------PFSC-RAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTC 102 (128)
T ss_dssp TTTEE---EEECCTTSCHHHHHHHTTCCC-------CCSS-SSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGG
T ss_pred eCCcE---EEEECCCCcHHHHHHHcCCCC-------ccCC-CccCCCCCEeEEecCCcCchhhccCCHhHhccCCEEEEE
Confidence 45632 336699999999999999999 7789 59999999998 146899999
Q ss_pred cceecCCCCCCC-eEEEc
Q 030608 137 QTTVGTPDSTGL-VVIQQ 153 (174)
Q Consensus 137 Q~~v~~~~~~gd-v~I~~ 153 (174)
|+++. +| ++|+.
T Consensus 103 q~~~~-----~d~i~i~~ 115 (128)
T 1doi_A 103 IGSPD-----ADEVKIVY 115 (128)
T ss_dssp GEEEC-----SSEEEEEE
T ss_pred EeEEc-----CCeEEEEe
Confidence 99999 67 77764
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.24 E-value=9.9e-12 Score=104.90 Aligned_cols=53 Identities=21% Similarity=0.546 Sum_probs=47.4
Q ss_pred ecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE-----------------cCCCeEEeecceecCCCCCCC
Q 030608 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE-----------------KPKNWRLACQTTVGTPDSTGL 148 (174)
Q Consensus 86 ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~-----------------~~~g~RLACQ~~v~~~~~~gd 148 (174)
++.+|++||++|+++||++ ++.| |.|.||+|+|+ + +++||+||+++. +|
T Consensus 250 ~~~~~~~ll~a~~~~g~~~-------~~~C-~~G~Cg~C~~~v~~G~~~~~~~~l~~~e~-~g~~L~C~~~~~-----~d 315 (321)
T 2pia_A 250 EIPANRSILEVLRDANVRV-------PSSC-ESGTCGSCKTALCSGEADHRDMVLRDDEK-GTQIMVCVSRAK-----SA 315 (321)
T ss_dssp EECTTSCHHHHHHHTTCCC-------CCSC-SSSSSCTTEEEEEESCEECCCSSCCTTTT-TTEEETTTCEES-----SS
T ss_pred EECCCCcHHHHHHHcCCCC-------CCCC-CCCCCCCCEEEEecCccccccCCCChHHH-CCeEEEeEeEEC-----CC
Confidence 5689999999999999999 7889 59999999998 2 689999999999 66
Q ss_pred -eEEE
Q 030608 149 -VVIQ 152 (174)
Q Consensus 149 -v~I~ 152 (174)
++|+
T Consensus 316 ~~~i~ 320 (321)
T 2pia_A 316 ELVLD 320 (321)
T ss_dssp EEEEC
T ss_pred cEEEe
Confidence 8875
No 25
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.25 E-value=2.5e-06 Score=69.61 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=50.3
Q ss_pred EEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCC
Q 030608 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 83 ~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
..+++.+|+|||++|++.|+.+...+. ....| +.|.||+|.|......+|||++.+.+.+ +.++|+.++
T Consensus 26 ~~~~~~~~~tll~al~~~~~~~~p~l~-~~~~c-~~G~Cg~C~v~v~G~~~~aC~~~~~~~~--~~~~i~~l~ 94 (243)
T 1kf6_B 26 YEVPYDATTSLLDALGYIKDNLAPDLS-YRWSC-RMAICGSCGMMVNNVPKLACKTFLRDYT--DGMKVEALA 94 (243)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTCTTCC-CCCCC-SSSSSCCCEEEETTEEEEGGGCBGGGCT--TCEEEECCT
T ss_pred EEEecCCCChHHHHHHHcCcccCCCcc-cccCC-CCCcCCCCEeEECCEEEeeeeeEHhhCC--CcEEEEecC
Confidence 445778999999999999954111111 14689 5999999999976667999999998532 138887654
No 26
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.22 E-value=2.9e-06 Score=69.02 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=52.7
Q ss_pred EEEecCC--CchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecC-CCCCCCeEEEcCC
Q 030608 83 HFRTACG--GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGT-PDSTGLVVIQQLP 155 (174)
Q Consensus 83 ~~~ea~~--GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~-~~~~gdv~I~~lp 155 (174)
..+++.+ |+|||++|++.++.. |.-....+|+ .|.||.|.|.....-+|||++.+.. .|..+.++|+.|.
T Consensus 23 ~~v~~~~~~~~tll~~l~~~~~~~--~~l~~~~~C~-~g~Cg~C~v~v~G~~~laC~~~~~~~g~~~~~~~ie~l~ 95 (238)
T 2wdq_B 23 YTLEADEGRDMMLLDALIQLKEKD--PSLSFRRSCR-EGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLP 95 (238)
T ss_dssp EEEECCTTCCCBHHHHHHHHHHHC--TTCCCCCSSS-SSSSCTTEEEETTEEEEGGGCBGGGTCCTTSCEEEECCT
T ss_pred EEeecCCCCCChHHHHHHHhcccC--CCccccccCC-CCCCCCCEEEECCEEEcccccchhhhccCCCCEEEeeCC
Confidence 3456778 999999999988431 1111256897 9999999999766668999999986 4654568999776
No 27
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.19 E-value=3.4e-06 Score=68.85 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=49.8
Q ss_pred EEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCC
Q 030608 83 HFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLP 155 (174)
Q Consensus 83 ~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lp 155 (174)
..+++.+|+||||+|++.|+.+...+. ....|+ .|.||+|.|.....-+|||++.+.+.. .+.++|+.++
T Consensus 26 ~~v~~~~~~tlL~~l~~~~~~~~~~l~-~~~~c~-~g~Cg~C~v~i~G~~~~aC~~~~~~~~-g~~~~ie~l~ 95 (241)
T 2bs2_B 26 YKIEEAPSMTIFIVLNMIRETYDPDLN-FDFVCR-AGICGSCGMMINGRPSLACRTLTKDFE-DGVITLLPLP 95 (241)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCTTCC-CCCSSS-SSSSCTTEEEETTEEEEGGGCBGGGCT-TSEEEEECCT
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCCc-cCCCCC-CCCCCCCEeEECCCeecchhCcHhHcC-CCeEEEecCC
Confidence 345678899999999987643211111 145796 999999999976566899999998532 2348888765
No 28
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.17 E-value=5.5e-06 Score=65.73 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=42.8
Q ss_pred EecCCCchHHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecC
Q 030608 85 RTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGT 142 (174)
Q Consensus 85 ~ea~~GetLldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~ 142 (174)
+++.+|++|+++|+++ |+.. ....|+ .|.||+|.|......++||.+.+..
T Consensus 23 ~~v~~~~tlL~~Lr~~~gl~g------~~~~C~-~G~CGaC~V~vdG~~v~sC~~~~~~ 74 (168)
T 1t3q_A 23 FYVEPRMHLADALREVVGLTG------TKIGCE-QGVCGSCTILIDGAPMRSCLTLAVQ 74 (168)
T ss_dssp EEECTTSBHHHHHHHTTCCTT------SCCSCS-SSSSCTTEEEETTEEEEGGGSBGGG
T ss_pred EecCCCCcHHHHHHhcCCCCc------cccCCC-CCCCCCcEEEECCCEeechhhHHHH
Confidence 3679999999999996 8862 156797 9999999999766679999999873
No 29
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.16 E-value=2.2e-06 Score=81.25 Aligned_cols=57 Identities=23% Similarity=0.429 Sum_probs=48.6
Q ss_pred ecCCCchHHHHHHHCCCCccCCCCCCCCCC-----CCCceecccEEEcC-----------------------CCeEEeec
Q 030608 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNC-----AGGGTCGTCMVEKP-----------------------KNWRLACQ 137 (174)
Q Consensus 86 ea~~GetLldaal~~GI~L~~p~~k~~~~C-----GG~G~CGTC~V~~~-----------------------~g~RLACQ 137 (174)
++++|+|||++++++||+| ++.| ++.|.|+.|.|+.. .+..+||+
T Consensus 12 ~v~~g~til~a~~~~gi~i-------p~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~~~~aC~ 84 (783)
T 3i9v_3 12 EVPPGTSVMDAVFHAGYDV-------PLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCV 84 (783)
T ss_dssp EECTTCBHHHHHHHTTCCC-------CCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSSCEETTT
T ss_pred EeCCCChHHHHHHHhCCCc-------cccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCCCcccccC
Confidence 5699999999999999999 7788 67999999999941 24678999
Q ss_pred ceecCCCCCCCeEEEcC
Q 030608 138 TTVGTPDSTGLVVIQQL 154 (174)
Q Consensus 138 ~~v~~~~~~gdv~I~~l 154 (174)
+.+. ++++|+..
T Consensus 85 t~v~-----~gm~v~t~ 96 (783)
T 3i9v_3 85 TAVA-----DGMVVDTL 96 (783)
T ss_dssp CBCC-----SSEEEESS
T ss_pred CCCC-----CCCEEEEC
Confidence 9999 68888753
No 30
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.15 E-value=3.6e-06 Score=77.48 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=47.4
Q ss_pred ecCCCchHHHHHHHCCCCccCCCCCCCCCCC-----C-CceecccEEEcCCC-eEEeecceecCCCCCCCeEEEc
Q 030608 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCA-----G-GGTCGTCMVEKPKN-WRLACQTTVGTPDSTGLVVIQQ 153 (174)
Q Consensus 86 ea~~GetLldaal~~GI~L~~p~~k~~~~CG-----G-~G~CGTC~V~~~~g-~RLACQ~~v~~~~~~gdv~I~~ 153 (174)
++++|+|||++++++||.+ +..|. + .|.||.|.|+.... .++||++.+. ++++|..
T Consensus 12 ~v~~g~tiL~a~~~~gi~i-------p~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~-----~gm~V~T 74 (574)
T 3c8y_A 12 NTDEDTTILKFARDNNIDI-------SALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIE-----DGMIINT 74 (574)
T ss_dssp EECCCCBHHHHHHHTTCCC-------CCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCC-----TTCEEES
T ss_pred EeCCCCHHHHHHHHcCCCC-------CcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcc-----cceeEEe
Confidence 5699999999999999987 55566 7 99999999996544 7999999999 6777774
No 31
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=98.04 E-value=9.2e-06 Score=67.15 Aligned_cols=71 Identities=20% Similarity=0.328 Sum_probs=50.4
Q ss_pred EEEecCC-CchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCCc
Q 030608 83 HFRTACG-GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLPE 156 (174)
Q Consensus 83 ~~~ea~~-GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lpe 156 (174)
..+++.+ |++|||+|++.|+.+...+. ....|+ .|.||.|.|......+|||++.+.... ...++|+.|+.
T Consensus 33 ~~v~~~~~~~tlLd~l~~~~~~~~p~l~-~~~~c~-~g~Cg~C~v~i~G~~~~aC~~~~~~~~-g~~~~iepl~~ 104 (252)
T 2h88_B 33 YEVDLNKCGPMVLDALIKIKNELDSTLT-FRRSCR-EGICGSCAMNIAGGNTLACTKKIDPDL-SKTTKIYPLPH 104 (252)
T ss_dssp EEEEGGGSCSBHHHHHHHHHHHTCTTCC-CCCSCS-SSSSCTTEEEETTEEEEGGGSBCCCCT-TSCEEEECSTT
T ss_pred EEEecCCCCChHHHHHHHhCcccCCCcc-ccCCCC-CCCCCCCEEEECCcEEccccCCHhHcC-CCceEEecccC
Confidence 3456677 99999999998742110011 134796 999999999976667999999998532 22688888763
No 32
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=97.86 E-value=4.9e-05 Score=65.26 Aligned_cols=71 Identities=18% Similarity=0.315 Sum_probs=50.9
Q ss_pred EEecCC-CchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCCCCCCCeEEEcCCcc
Q 030608 84 FRTACG-GQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTPDSTGLVVIQQLPEW 157 (174)
Q Consensus 84 ~~ea~~-GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~~~~gdv~I~~lpe~ 157 (174)
.+++.+ |++||++|++.+..+....+ ....|+ .|.||.|.|.....-+|||.+.+.... .+.++|+-|+..
T Consensus 58 ~v~v~~~~~tlLdaL~~i~~~~~ptl~-~~~~C~-~G~CGsC~V~InG~~~laC~t~v~~~~-~~~~tIepL~~~ 129 (282)
T 3vr8_B 58 DVDLDKCGTMVLDALIKIKNEVDPTLT-FRRSCR-EGICGSCAMNIAGENTLACICNIDQNT-SKTTKIYPLPHM 129 (282)
T ss_pred EEEeCCCCCcHHHHHHhcCcccCCcee-ecCCCC-CCCCCCCEEEECCEEecchhhhHhHhc-CCcEEeccCCCC
Confidence 346677 99999999997764321111 134798 699999999977667999999987422 356888877643
No 33
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=97.71 E-value=5.4e-05 Score=59.93 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=44.3
Q ss_pred CCCeeEEEEecCCCchHHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecC
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGT 142 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~ 142 (174)
||.. + .+++.+|++|+++|++. |+.- ....|+ .|.||.|.|.....-++||++.+..
T Consensus 10 NG~~-~-~v~~~~~~tLL~~Lr~~~gl~g------~k~gC~-~G~CGaCtV~vdG~~v~sC~~~~~~ 67 (161)
T 1rm6_C 10 NGRA-R-EDLVPDNMLLLDYLRETVGLTG------TKQGCD-GGECGACTVLVDDRPRLACSTLAHQ 67 (161)
T ss_dssp TTEE-E-EEEEETTCBHHHHHHHTTCCTT------SCCCSS-SSSSCTTEEEETTEEEEGGGSBGGG
T ss_pred CCEE-E-EEecCCcCcHHHHHHHcCCCcc------cccCCC-CCCCCCCEEEECCcEEechHHHHHH
Confidence 5543 2 23678999999999997 5431 156898 8999999999777779999999873
No 34
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.70 E-value=6e-05 Score=60.16 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=44.1
Q ss_pred CCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecC
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGT 142 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~ 142 (174)
+|.. +.+++.++++|+++|++. +.+.+ ....|+ .|.||.|.|.....-++||.+.+..
T Consensus 11 NG~~--~~~~v~~~~tLLd~LR~~-lgltg----~k~gC~-~G~CGaCtV~vdG~~v~sC~~~~~~ 68 (163)
T 1ffv_A 11 NGKA--QEKAVEPRTLLIHFLREE-LNLTG----AHIGCE-TSHCGACTVDIDGRSVKSCTHLAVQ 68 (163)
T ss_dssp TTEE--EEEEECTTCBHHHHHHHT-SCCTT----SCCCCS-SSCSCTTEEEETTEEEEGGGSBGGG
T ss_pred CCEE--EEEecCCCCcHHHHHHhc-CCCcc----cccCCC-CCCCCCCEEEECCcEecchHhhHHH
Confidence 5543 234678999999999984 22322 256798 8999999999777789999999873
No 35
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.70 E-value=6.2e-05 Score=60.24 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=43.5
Q ss_pred CCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceec
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVG 141 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~ 141 (174)
+|.. ..+++.++++|+++|++. +.+.+. ...|+ .|.||.|.|.....-++||.+.+.
T Consensus 11 NG~~--~~~~v~~~~tLLd~LR~~-lgl~g~----k~gC~-~G~CGaCtV~vdG~~v~SC~~~~~ 67 (166)
T 1n62_A 11 NGHP--VEALVEPRTLLIHFIREQ-QNLTGA----HIGCD-TSHCGACTVDLDGMSVKSCTMFAV 67 (166)
T ss_dssp TTEE--EEEEECTTCBHHHHHHHT-SCCTTS----CCCCS-SSCSCTTEEEETTEEEEGGGSBGG
T ss_pred CCEE--EEEecCCCCcHHHHHHHc-CCCCcc----ccCCC-CCCCCCCEEEECCcEEechhhhHH
Confidence 5543 234678999999999985 223222 56797 899999999977777999999986
No 36
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.58 E-value=9.1e-05 Score=59.11 Aligned_cols=63 Identities=17% Similarity=0.374 Sum_probs=47.7
Q ss_pred eEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceec
Q 030608 65 VNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVG 141 (174)
Q Consensus 65 v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~ 141 (174)
..++|.- +|.. +.+++.++++|+++|++. |+. + ....|+ .|.||.|.|.....-++||.+.+.
T Consensus 4 ~~i~~~v-----NG~~--~~v~v~p~~tLLd~LR~~lglt--g----tk~gC~-~G~CGACtV~vdG~~v~sC~~~~~ 67 (160)
T 3hrd_D 4 ITINLNL-----NGEA--RSIVTEPNKRLLDLLREDFGLT--S----VKEGCS-EGECGACTVIFNGDPVTTCCMLAG 67 (160)
T ss_dssp EEEEEEE-----TTEE--EEEEECSSSBHHHHHHTTSCCT--T----SCCSSS-SSSSCTTEEEETTEEEEGGGSBGG
T ss_pred ceEEEEE-----CCEE--EEEecCCCCCHHHHHHHhcCCC--c----cccccC-CCCCCCCEEEECCEEEEchhhhhh
Confidence 3456655 5653 234678999999999985 542 2 145797 999999999987778999999886
No 37
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=96.18 E-value=0.0048 Score=60.00 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=52.6
Q ss_pred EEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCC-C
Q 030608 66 NFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTP-D 144 (174)
Q Consensus 66 ~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~-~ 144 (174)
+++|.- +|.. ..+++.++++|+++|++. +.+-+ ....|+ .|.||.|-|.....-++||.+.+..- .
T Consensus 3 ~~~~~~-----ng~~--~~~~~~~~~~ll~~Lr~~-~~l~g----~k~gC~-~g~CGaCtv~vdg~~~~sC~~~~~~~~~ 69 (907)
T 1vlb_A 3 QKVITV-----NGIE--QNLFVDAEALLSDVLRQQ-LGLTG----VKVGCE-QGQCGACSVILDGKVVRACVTKMKRVAD 69 (907)
T ss_dssp EEEEEE-----TTEE--EEEEECTTSBHHHHHHHT-TCCTT----SCCSSS-SSSSCTTEEEETTEEEEGGGCBGGGSCT
T ss_pred eEEEEE-----CCEE--EEEecCCCChHHHHHHHh-cCCCe----ecCCCC-CCCcCccEEEECCeEeechHhHHHHHcC
Confidence 455555 5543 234678999999999985 22222 256898 89999999998778899999988742 2
Q ss_pred CCCCeEEEcCC
Q 030608 145 STGLVVIQQLP 155 (174)
Q Consensus 145 ~~gdv~I~~lp 155 (174)
-..-++|+-|.
T Consensus 70 g~~i~Tiegl~ 80 (907)
T 1vlb_A 70 GAQITTIEGVG 80 (907)
T ss_dssp TCEEECHHHHC
T ss_pred CCcEEEECCCC
Confidence 22234555554
No 38
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.13 E-value=0.0051 Score=59.79 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=46.5
Q ss_pred ecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCC-CCCCCeEEEcCC
Q 030608 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTP-DSTGLVVIQQLP 155 (174)
Q Consensus 86 ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~-~~~gdv~I~~lp 155 (174)
++.++++||+.|++. +.+.+ ....|+ .|.||.|-|.....-++||.+.+..- +-..-++|+-|.
T Consensus 16 ~~~~~~~ll~~Lr~~-~~l~g----~k~gC~-~G~CGaCtv~vdg~~v~sC~~~~~~~~~g~~i~TiEgl~ 80 (907)
T 1dgj_A 16 LVSPNDLLVDVLRSQ-LQLTS----VKVGCG-KGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIG 80 (907)
T ss_dssp EECTTCBHHHHHHHT-TCCTT----SCCSSS-SSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECGGGTC
T ss_pred ecCCCCcHHHHHHHh-cCCCc----cCCCCC-CCCcCceEEEECCeEeehhHhHHHHHcCCCcEEEECCCC
Confidence 678999999999985 23322 256898 89999999998777899999988742 222234455454
No 39
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=95.80 E-value=0.0059 Score=55.30 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=48.9
Q ss_pred CCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEc----CCCeEEeecceecCCCCCCCeEEE
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEK----PKNWRLACQTTVGTPDSTGLVVIQ 152 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~----~~g~RLACQ~~v~~~~~~gdv~I~ 152 (174)
+|.. +++-++.++++|++.|++.|+. + ....|+ .|.||.|-|.. +..-++||.+.+..-....-++|+
T Consensus 8 Ng~~-~~~~~~~~~~~Ll~~Lr~~~l~--g----~k~gC~-~G~CGaCtV~v~~~~~g~~v~sCl~~~~~~~g~~i~TiE 79 (462)
T 2w3s_A 8 NGET-RRVRIEDPTQSLLEWLRAEGLT--G----TKEGCN-EGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIE 79 (462)
T ss_dssp TTEE-EEEECSCTTCBHHHHHHHTTCT--T----SCCSCS-SSSSCTTEEEEEETTEEEEEETTTCBGGGGTTCEEECGG
T ss_pred CCEE-EEEecCCCCCcHHHHHHHcCCC--c----cCCCCC-CCCcCCcEEEEEecCCCeEEEchhhhHHHhCCCcEEEEC
Confidence 5543 2222678999999999955553 2 256899 89999999995 556789999988743222334555
Q ss_pred cCC
Q 030608 153 QLP 155 (174)
Q Consensus 153 ~lp 155 (174)
-+.
T Consensus 80 gl~ 82 (462)
T 2w3s_A 80 GIA 82 (462)
T ss_dssp GTS
T ss_pred CCC
Confidence 554
No 40
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=95.40 E-value=0.0081 Score=48.14 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=42.1
Q ss_pred CCCeeEEEEecCCCchHHHHHHHC-CCCccCCCCCCCCCCCCCceecccEEEcC----------CCeEEeecceecC
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNS-NIDLYGPYARPLSNCAGGGTCGTCMVEKP----------KNWRLACQTTVGT 142 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~-GI~L~~p~~k~~~~CGG~G~CGTC~V~~~----------~g~RLACQ~~v~~ 142 (174)
+|.. ++..++.++++|++.|++. |+. + .-..|+ .|.||.|-|... ..-..||.+.+..
T Consensus 10 NG~~-~~~~~~~p~~~Ll~~LR~~lglt--G----tK~GC~-~G~CGACTVlvd~~~~~~~~~~g~~v~SCl~~a~~ 78 (164)
T 3nvw_A 10 NGKK-VVEKNADPETTLLAYLRRKLGLR--G----TKLGCG-EGGCGACTVMLSKYDRLQDKIIHFSANACLAPICT 78 (164)
T ss_dssp TTEE-EEETTCCTTCBHHHHHHHTSCCT--T----SCCSCS-SSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGG
T ss_pred CCEE-EEEecCCCCCCHHHHHHHHcCCC--C----cCCCcC-CCCCCCCEEEEccccccccccCCcEEehhhhhHHH
Confidence 5653 2345678999999999985 432 2 256797 999999999844 3457899887763
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=91.75 E-value=0.31 Score=42.85 Aligned_cols=54 Identities=22% Similarity=0.135 Sum_probs=35.0
Q ss_pred ecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcC--CCeEEeecceecC
Q 030608 86 TACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKP--KNWRLACQTTVGT 142 (174)
Q Consensus 86 ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~--~g~RLACQ~~v~~ 142 (174)
++.+|+||+++++++|+++-. +......+ |.-.|+.|.|+.. .+ .-+|++.+.+
T Consensus 26 ~~~~g~ti~~a~~~~g~~~~~-~~~~~~p~-g~~~~~~c~v~v~g~~~-~~ac~~~v~~ 81 (493)
T 1y56_A 26 EAYEGEKLPVALLANEIYWLT-TSNEGRKR-GAFTFGPVPMTVNGVKG-LEARRIKVKD 81 (493)
T ss_dssp EEETTCBHHHHHHHTTCCCCE-ECTTSCEE-CSSSSSCCEEBSSSCTT-EEGGGCBCCT
T ss_pred EecCCCHHHHHHHHCCCceec-CCCCCCCC-ccccceEEEEEECCEec-ccceeEEccc
Confidence 568999999999999997521 00001111 1222688999943 23 5699999884
No 42
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=90.25 E-value=0.096 Score=42.14 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=29.4
Q ss_pred HHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcC-C--CeEEeecc
Q 030608 93 LRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKP-K--NWRLACQT 138 (174)
Q Consensus 93 Lldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~-~--g~RLACQ~ 138 (174)
+++ +++.|++.+--+.+ .+.|| -|.||.|.|... . +++..|.-
T Consensus 206 v~~-l~~~gv~~~vs~e~-~m~CG-~G~C~~C~~~~~~~~~~~~~~C~d 251 (262)
T 1ep3_B 206 VAK-KYDQLERLYISMES-RMACG-IGACYACVEHDKEDESHALKVCED 251 (262)
T ss_dssp HHH-HTTTCSSEEEECCC-CCSSS-SSSSCTTEEEETTEEEEEEETTTT
T ss_pred HHH-HHhCCCCEEEEecc-cccCc-ccccccCCcccccCCCceeEEeCC
Confidence 455 66678774322222 67898 999999999843 3 56788864
No 43
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=86.69 E-value=1.4 Score=42.58 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=44.0
Q ss_pred ecCCCchHHHHHHHCCCCccCC---CCCC-CCCCCCCceecccEEEcC--------CCeEEeecceecCCCCCCCeEEE
Q 030608 86 TACGGQKLRDIMLNSNIDLYGP---YARP-LSNCAGGGTCGTCMVEKP--------KNWRLACQTTVGTPDSTGLVVIQ 152 (174)
Q Consensus 86 ea~~GetLldaal~~GI~L~~p---~~k~-~~~CGG~G~CGTC~V~~~--------~g~RLACQ~~v~~~~~~gdv~I~ 152 (174)
++.+|+||..+|+.+|+.+-.. |.+. -..|+ .|.|.-|.|... .....||++.+. ..++|+
T Consensus 33 ~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~-~~~c~~~~v~v~~~~~g~~~~~~~~ac~~~~~-----~gm~~~ 105 (965)
T 2gag_A 33 SAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAA-GVEEPNALVTVSARHEQDIDESMLPATTVPVT-----EDLNAT 105 (965)
T ss_dssp EEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCS-STTCCSCEEEECCCSTTCCCEEEEEGGGCBCC-----TTEEEE
T ss_pred EecCCCHHHHHHHHcCCeEeecCCCCCCCcccccC-CccCCceEEEEccCCCCCcCCccccceeeecc-----cceEee
Confidence 5578999999999999985321 2221 24576 677999999965 235679999998 456664
No 44
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=82.52 E-value=0.54 Score=47.68 Aligned_cols=58 Identities=22% Similarity=0.381 Sum_probs=40.4
Q ss_pred CCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcC----------CCeEEeecceec
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKP----------KNWRLACQTTVG 141 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~----------~g~RLACQ~~v~ 141 (174)
+|.. ++..++.+.++|++.|++. +.+.+ .-..|+ .|.||.|-|... .....+|.+.+.
T Consensus 11 Ng~~-~~~~~~~p~~~ll~~LR~~-~~ltg----tk~gC~-~g~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~ 78 (1332)
T 3unc_A 11 NGKK-VVEKNADPETTLLAYLRRK-LGLRG----TKLGCG-EGGCGACTVMLSKYDRLQDKIIHFSANACLAPIC 78 (1332)
T ss_dssp TTEE-EEETTCCTTCBHHHHHHHT-SCCTT----SCCSCS-SSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGG
T ss_pred CCEE-EEeecCCCCCCHHHHHhhh-cCCCC----cCCCcC-CCCCCCcEEEEecccccccccCCeEeehHHhhHH
Confidence 5654 3334678999999999984 23322 245797 999999999842 234678887765
No 45
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=70.18 E-value=7.1 Score=28.71 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=27.9
Q ss_pred CeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCC
Q 030608 63 PVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSN 101 (174)
Q Consensus 63 p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~G 101 (174)
=.++|++++ .+|..+...++ ..|++|+++|.++.
T Consensus 7 k~i~i~v~~----~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 7 KHITVTVIH----GDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp EEEEEEEEC----TTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred eEEEEEEEc----CCCceeEEEEc-CCccHHHHHHHHcC
Confidence 357888888 78887665666 89999999999988
No 46
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=67.72 E-value=5.3 Score=40.48 Aligned_cols=44 Identities=32% Similarity=0.535 Sum_probs=32.5
Q ss_pred CCCeeEEEEecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEE
Q 030608 77 DGTPDIHFRTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVE 127 (174)
Q Consensus 77 dGt~~v~~~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~ 127 (174)
+|.. ++...+.+..|||+-|+++ ..+-+ .-..|+ .|-||.|-|-
T Consensus 15 NG~~-v~~~~~~p~~tLl~~LR~~-~~ltG----TK~gC~-EG~CGACtV~ 58 (1335)
T 3zyv_A 15 NGKK-VTERNADPEVNLLFYLRKV-IRLTG----TKYGCG-GGDCGACTVM 58 (1335)
T ss_dssp TTEE-EEESSCCTTCBHHHHHHHT-TCCTT----SCCSCS-SSSSCTTEEE
T ss_pred CCEE-EEeCCCCcCccHHHHHhcc-CCCcc----cccccC-CCCCcceEEE
Confidence 5653 5555688999999999983 23322 145799 9999999997
No 47
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=52.77 E-value=8.4 Score=27.35 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=18.9
Q ss_pred eeCCCCCeeEEEEecCCCchHHHHHHH
Q 030608 73 VLLPDGTPDIHFRTACGGQKLRDIMLN 99 (174)
Q Consensus 73 v~l~dGt~~v~~~ea~~GetLldaal~ 99 (174)
+.||++-. +.+++.+|++|+|++.+
T Consensus 6 vhLPn~Qr--T~V~VrpG~tlrdaL~K 30 (77)
T 1c1y_B 6 VFLPNKQR--TVVNVRNGMSLHDCLMK 30 (77)
T ss_dssp EEETTTEE--EEEECCTTCBHHHHHHH
T ss_pred EECCCCce--EEEEecCCcCHHHHHHH
Confidence 45678765 45688999999998755
No 48
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=50.08 E-value=9.2 Score=27.72 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=18.0
Q ss_pred eCCCCCeeEEEEecCCCchHHHHHHH
Q 030608 74 LLPDGTPDIHFRTACGGQKLRDIMLN 99 (174)
Q Consensus 74 ~l~dGt~~v~~~ea~~GetLldaal~ 99 (174)
.||++-. +.+++.+|++|+|++.+
T Consensus 13 hLPn~Qr--T~V~VrpG~tlrdaL~K 36 (86)
T 1wxm_A 13 YLPNKQR--TVVTVRDGMSVYDSLDK 36 (86)
T ss_dssp ECSSSCE--EEEECCSSCBSHHHHHH
T ss_pred ECCCCCe--EEEEecCCcCHHHHHHH
Confidence 4677765 45688999999888755
No 49
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=48.43 E-value=11 Score=27.91 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=17.9
Q ss_pred eCCCCCeeEEEEecCCCchHHHHHHH
Q 030608 74 LLPDGTPDIHFRTACGGQKLRDIMLN 99 (174)
Q Consensus 74 ~l~dGt~~v~~~ea~~GetLldaal~ 99 (174)
.||++-. +.+++.+|++|+|++.+
T Consensus 23 hLPNqQr--T~V~VrpG~tlrdAL~K 46 (95)
T 2l05_A 23 FLPNKQR--TVVPARCGVTVRDSLKK 46 (95)
T ss_dssp EETTTEE--EEEECCTTCBHHHHHHH
T ss_pred ECCCCCe--EEEEecCCcCHHHHHHH
Confidence 3567755 45688999999998754
No 50
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=44.93 E-value=13 Score=27.48 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=18.0
Q ss_pred eCCCCCeeEEEEecCCCchHHHHHHH
Q 030608 74 LLPDGTPDIHFRTACGGQKLRDIMLN 99 (174)
Q Consensus 74 ~l~dGt~~v~~~ea~~GetLldaal~ 99 (174)
.||++-. +.+++.+|.+|++++.+
T Consensus 19 hLPNqQr--T~V~VrpG~tlrdaL~K 42 (96)
T 3ny5_A 19 FLPNKQR--TVVPARCGVTVRDSLKK 42 (96)
T ss_dssp EETTTEE--EEEECCTTCBHHHHHHH
T ss_pred ECCCCce--EEEEecCCcCHHHHHHH
Confidence 4567755 45688999999998865
No 51
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=35.59 E-value=27 Score=26.25 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=18.4
Q ss_pred eeCCCCCeeEEEEecCCCchHHHHHHH
Q 030608 73 VLLPDGTPDIHFRTACGGQKLRDIMLN 99 (174)
Q Consensus 73 v~l~dGt~~v~~~ea~~GetLldaal~ 99 (174)
+.||++-. ..+++.+|.+|+|++.+
T Consensus 23 ~hLPNqQr--T~V~VrpG~tlrdaL~K 47 (107)
T 1rrb_A 23 VFLPNKQR--TVVNVRNGMSLHDCLMK 47 (107)
T ss_dssp EECTTTCC--EEEECCTTCBHHHHHHH
T ss_pred EECCCCCe--EEEEecCCcCHHHHHHH
Confidence 45677755 34688999999988755
No 52
>4gbm_A CURM sulfotransferase; polyketide synthase, curacin, PAP, PAPS; HET: A3P P6G; 1.62A {Moorea producta}
Probab=30.45 E-value=29 Score=27.83 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=14.7
Q ss_pred CCCchHHHHHHHCCCCcc
Q 030608 88 CGGQKLRDIMLNSNIDLY 105 (174)
Q Consensus 88 ~~GetLldaal~~GI~L~ 105 (174)
..|.|||..++.+.=.+.
T Consensus 42 RSGTTlL~~iL~~Hp~v~ 59 (323)
T 4gbm_A 42 RSGSTLLRVMLAGHSSLF 59 (323)
T ss_dssp TSSHHHHHHHHHTCTTEE
T ss_pred CCHHHHHHHHHHcCCCcc
Confidence 579999999999866553
No 53
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=27.31 E-value=60 Score=26.25 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=28.9
Q ss_pred CCCeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCC
Q 030608 61 EPPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNI 102 (174)
Q Consensus 61 ~~p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI 102 (174)
+-.|++|+|.+ +-|.. | .++++.++.||+.++..|-
T Consensus 4 ~~tml~i~f~t----~LG~~-V-~vdve~~~~~l~v~R~yG~ 39 (184)
T 3kdv_A 4 PFTMLHIEFIT----DLGAK-V-TVDVESADKLLDVQRQYGR 39 (184)
T ss_dssp CSCCEEEEEEC----TTCCE-E-EEEESSGGGHHHHHHHHHT
T ss_pred ccceEEEEEec----CCCce-E-EEecCCHHHHHHHHHHhhh
Confidence 34689999999 77875 4 4588999999999998754
No 54
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=24.01 E-value=53 Score=23.57 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=27.2
Q ss_pred CCeeEEEEeeeeeCCCCCeeEEEEecCCCchHHHHHHHCCCC
Q 030608 62 PPVVNFAFVHSVLLPDGTPDIHFRTACGGQKLRDIMLNSNID 103 (174)
Q Consensus 62 ~p~v~~~f~~~v~l~dGt~~v~~~ea~~GetLldaal~~GI~ 103 (174)
+-.|++.|.. ++.-. ...+++++|.|+.+++...|+.
T Consensus 12 ~~~v~v~ya~----p~rq~-~~~~~v~~g~TV~daI~~~gi~ 48 (97)
T 2hj1_A 12 QINIEIAYAF----PERYY-LKSFQVDEGITVQTAITQSGIL 48 (97)
T ss_dssp EEEEEEEEEE----TTEEE-EEEEEEETTCBHHHHHHHHTHH
T ss_pred eEEEEEEEeC----CCCCE-EEEEEcCCCCcHHHHHHHcCCC
Confidence 3456777776 66443 3455789999999999999984
No 55
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=20.32 E-value=44 Score=19.40 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=16.6
Q ss_pred ecCCCchHHHHHHHCCCCc
Q 030608 86 TACGGQKLRDIMLNSNIDL 104 (174)
Q Consensus 86 ea~~GetLldaal~~GI~L 104 (174)
.+.+|+||-.++.+.|+.+
T Consensus 6 ~V~~GDtl~~Ia~~~~~~~ 24 (48)
T 1e0g_A 6 RVRKGDSLSSIAKRHGVNI 24 (48)
T ss_dssp EECTTCCHHHHHHHHTCCH
T ss_pred EEcCCCcHHHHHHHHCcCH
Confidence 4589999999999999876
No 56
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=20.13 E-value=2.4e+02 Score=25.35 Aligned_cols=56 Identities=11% Similarity=0.015 Sum_probs=36.3
Q ss_pred EecCCCchHHHHHHHCCCCccCCCCCCCCCCCCCceecccEEEcCCCeEEeecceecCC--CCCCCeEEEcCCc
Q 030608 85 RTACGGQKLRDIMLNSNIDLYGPYARPLSNCAGGGTCGTCMVEKPKNWRLACQTTVGTP--DSTGLVVIQQLPE 156 (174)
Q Consensus 85 ~ea~~GetLldaal~~GI~L~~p~~k~~~~CGG~G~CGTC~V~~~~g~RLACQ~~v~~~--~~~gdv~I~~lpe 156 (174)
+++.+|.+|||+|..-. .+ .|.- +|.+.....-||| .+.+..- ...+.++|+.+|-
T Consensus 47 v~~~~~~~vLd~L~~ik-~l---------~fr~-----sCam~ING~~~la-~t~~~~~~~~~~~~i~iePl~~ 104 (514)
T 3kwl_A 47 LEYQEDQYLLDLLKQLK-GV---------SYSE-----NIALKINQIAVFE-DAKVSDLVAFFSKEWVLDPLSK 104 (514)
T ss_dssp EECCTTCBHHHHHTTST-TC---------CCCS-----SCCEEETTEEECS-CCBHHHHHHHHCSEEEEECSCS
T ss_pred EeCCCCCcHHHHHHHhh-hC---------eeec-----cceEEECCEehhh-hhhHHHHhhccCCcEEEEECCC
Confidence 35678999999998765 44 3553 6778866677899 3433210 0125788888765
Done!