BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030609
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MIL|A Chain A, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
pdb|3MIL|B Chain B, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
Length = 240
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 9 GPH-VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAV-WGRTN 66
GP VPLPE+I+N+R++ +KS + II P + ++ +E S + A+ + RTN
Sbjct: 89 GPQSVPLPEFIDNIRQMVSLMKSYHIRPIII---GPGLVDREKWEKEKSEEIALGYFRTN 145
Query: 67 ESCRIYSEACLKLCQEMDVKAIDLWTAMQQR--DDWLTTCFMDGIHFSSEGSKIVVKEIL 124
E+ IYS+A KL E V + L A QQ D W DG+HFS +G KI E+L
Sbjct: 146 ENFAIYSDALAKLANEEKVPFVALNKAFQQEGGDAW-QQLLTDGLHFSGKGYKIFHDELL 204
Query: 125 KVLREADWEPSLHWRSL 141
KV+ + P H +++
Sbjct: 205 KVIET--FYPQYHPKNM 219
>pdb|2HSJ|A Chain A, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|B Chain B, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|C Chain C, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|D Chain D, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia
Length = 214
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 1 MLPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFA 60
+L + +G VP+ E + N+ I + T I LS P+N+++ ++ A
Sbjct: 91 LLIGTNDIGKDVPVNEALNNLEAIIQSVARDYPLTEIKLLSILPVNEREEYQQ------A 144
Query: 61 VWGRTNESCRIYSEACLKLC----QEMDVKAIDLWT--AMQQRDDWLTTCFMDGIHFSSE 114
V+ R+NE + +++A +L Q V D T A Q + ++ T DG+H S
Sbjct: 145 VYIRSNEKIQNWNQAYQELASAYXQVEFVPVFDCLTDQAGQLKKEYTT----DGLHLSIA 200
Query: 115 GSKIVVKEI 123
G + + K +
Sbjct: 201 GYQALSKSL 209
>pdb|1Z8H|A Chain A, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
pdb|1Z8H|B Chain B, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
pdb|1Z8H|C Chain C, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
pdb|1Z8H|D Chain D, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
Length = 218
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESC 69
P V + E I+N R+I K L ++ +S P +QQ GR +
Sbjct: 108 PRVSIAETIKNTREILTQAKKLYP---VLXISPAPYIEQQDP-----------GRRRRTI 153
Query: 70 RIYSEACLKLCQEMDVKAIDLWTAMQQRDDWLTTCFM-DGIHFSSEGSKIVVKEILKVLR 128
+ + L +CQ++DV +D++ +++ WL DG+H + G E +++
Sbjct: 154 DLSQQLAL-VCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGG----YTEFARIVE 208
Query: 129 EADWEPSLHW 138
+W+ L+W
Sbjct: 209 --NWDAWLNW 216
>pdb|1VJG|A Chain A, Crystal Structure Of A Gdsl-like Lipase (alr1529) From
Nostoc Sp. Pcc 7120 At 2.01 A Resolution
Length = 218
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESC 69
P V + E I+N R+I K L ++ +S P +QQ GR +
Sbjct: 108 PRVSIAETIKNTREILTQAKKLYP---VLXISPAPYIEQQDP-----------GRRRRTI 153
Query: 70 RIYSEACLKLCQEMDVKAIDLWTAMQQRDDWLTTCFM-DGIHFSSEGSKIVVKEILKVLR 128
+ + L +CQ++DV +D++ +++ WL DG+H + G E +++
Sbjct: 154 DLSQQLAL-VCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGG----YTEFARIVE 208
Query: 129 EADWEPSLHW 138
+W+ L+W
Sbjct: 209 --NWDAWLNW 216
>pdb|3RU6|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
Length = 303
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 83 MDVKAIDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLREADWEPSLHWRSLP 142
+D+K D+ M + ++ +D I+ + KI ++E++ L + P + S
Sbjct: 81 LDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSKFSKRPLVLAVSAL 140
Query: 143 TEFDEDSTY 151
T FDE++ +
Sbjct: 141 TSFDEENFF 149
>pdb|2V54|A Chain A, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Tdp
pdb|2V54|B Chain B, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Tdp
pdb|2W0S|A Chain A, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Brivudin-5'-Monophosphate
pdb|2W0S|B Chain B, Crystal Structure Of Vaccinia Virus Thymidylate Kinase
Bound To Brivudin-5'-Monophosphate
Length = 204
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 119 VVKEILKVLREADWEPSLHWRSLPTEFDED 148
V++E K++ E D +HW+ + +EF+ED
Sbjct: 153 VLQEYKKMIEEGD----IHWQIISSEFEED 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,521,839
Number of Sequences: 62578
Number of extensions: 203008
Number of successful extensions: 464
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)