BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030610
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC C + P +EK A Y FY +D
Sbjct: 2 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLD 57
Query: 143 VNAVPHKLVARAGVMKMPTI 162
V+ V + +A V MPT+
Sbjct: 58 VDEVSD-VAQKAEVSSMPTL 76
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC C + P +EK A Y FY +D
Sbjct: 9 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLD 64
Query: 143 VNAVPHKLVARAGVMKMPTI 162
V+ V + +A V MPT+
Sbjct: 65 VDEVSD-VAQKAEVSSMPTL 83
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
E ++ + A WC C+ L P +E+LA DY P++ F ++ + P + AR GVM +PT+
Sbjct: 17 EIAVVDFWAEWCAPCLILAPIIEELAEDY-PQVGFGKLNSDENP-DIAARYGVMSLPTV 73
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ V++ + A+WC C + P LE +AA+Y ++ ++++ P A+ GVM +PT+
Sbjct: 23 DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP-GTAAKYGVMSIPTL 81
Query: 163 QV 164
V
Sbjct: 82 NV 83
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S+FD IA+ D+ V++ + A+WC C + P +EK + Y P+ FY +D
Sbjct: 2 VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLD 56
Query: 143 VNAVPHKLVARAGVMKMPTIQVNSN 167
V+ + + + V MPT+ + N
Sbjct: 57 VDEL-GDVAQKNEVSAMPTLLLFKN 80
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S+FD IA+ D+ V++ + A+WC C + P +EK + Y P+ FY +D
Sbjct: 8 VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLD 62
Query: 143 VNAVPHKLVARAGVMKMPTIQVNSN 167
V+ + + + V MPT+ + N
Sbjct: 63 VDEL-GDVAQKNEVSAMPTLLLFKN 86
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + + A+WC C + P LE+LAADY + +DV+ P
Sbjct: 9 TDADFDSKVESGVQL-----VDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 148 HKLVARAGVMKMPTIQV 164
A+ VM +PT+ V
Sbjct: 64 ST-AAKYEVMSIPTLIV 79
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + W A+WC C + P LE+LAADY + +DV+ P
Sbjct: 10 TDADFDSKVESGVQL----VDFW-ATWCGTCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 148 HKLVARAGVMKMPTIQV 164
A+ VM +PT+ V
Sbjct: 65 ST-AAKYEVMSIPTLIV 80
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + W A+WC C + P LE+LAADY + +DV+ P
Sbjct: 10 TDADFDSKVESGVQL----VDFW-ATWCGPCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 148 HKLVARAGVMKMPTIQV 164
A+ VM +PT+ V
Sbjct: 65 ST-AAKYEVMSIPTLIV 80
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
+ S+++FD +I++ +E VI+ + A WC C + P E+ + Y ++ F VDV+
Sbjct: 13 VTSQAEFDSIISQ----NELVIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDVDE 67
Query: 146 VPHKLVARAGVMKMPTIQVNSN 167
V + + + MPT +V N
Sbjct: 68 VSE-VTEKENITSMPTFKVYKN 88
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV 151
FD I + ++ V++ + A WC C+ L P +E+LA DY P++ F ++ +
Sbjct: 16 FDEFITK----NKIVVVDFWAEWCAPCLILAPVIEELANDY-PQVAFGKLNTEE-SQDIA 69
Query: 152 ARAGVMKMPTIQVNSN 167
R G+M +PTI N
Sbjct: 70 MRYGIMSLPTIMFFKN 85
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC + P +EK A Y FY +D
Sbjct: 10 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLD 65
Query: 143 VNAVPHKLVARAGVMKMPTI 162
V+ V + +A V MPT+
Sbjct: 66 VDEVSD-VAQKAEVSSMPTL 84
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC + P +EK A Y FY +D
Sbjct: 2 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLD 57
Query: 143 VNAVPHKLVARAGVMKMPTI 162
V+ V + +A V MPT+
Sbjct: 58 VDEVSD-VAQKAEVSSMPTL 76
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S+FD IA+ D+ V++ + A+WC + P +EK + Y P+ FY +D
Sbjct: 8 VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPSKMIAPMIEKFSEQY-PQADFYKLD 62
Query: 143 VNAVPHKLVARAGVMKMPTIQVNSN 167
V+ + + + V MPT+ + N
Sbjct: 63 VDEL-GDVAQKNEVSAMPTLLLFKN 86
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ I+ + A WC C + P LE+L+ +Y ++ Y V+V+ P +L G+ +PTI
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEP-ELARDFGIQSIPTI 109
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ I+ + A WC C + P LE+L+ +Y ++ Y V+V+ P +L G+ +PTI
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEP-ELARDFGIQGIPTI 109
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + W A+WC + P LE+LAADY + +DV+ P
Sbjct: 10 TDADFDSKVESGVQL----VDFW-ATWCGTSKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 148 HKLVARAGVMKMPTIQV 164
A+ VM +PT+ V
Sbjct: 65 ST-AAKYEVMSIPTLIV 80
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
E F + +A A ++ + A WC C + P LE+LA D+ RL+ V+V+ P
Sbjct: 40 EKGFAQEVAGAPL----TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG 95
Query: 149 KLVARAGVMKMPTI 162
L AR GV +PT+
Sbjct: 96 -LAARYGVRSVPTL 108
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 98 EAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
E +Q + +II++ SWC+ C +KP E++A+ +RF +D K +A +
Sbjct: 12 EVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDA-EKTMAELNIR 70
Query: 158 KMPTIQV 164
+P++ +
Sbjct: 71 TLPSLAL 77
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA-ADYHPRLRFYNVDVN 144
I S QF +V D+ V+I + A+WC C + P EK++ ++ FY VDV+
Sbjct: 20 ISSYDQFKQVTGG----DKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 75
Query: 145 AVPHKLVARAGVMKMPTI 162
++ G+ MPT
Sbjct: 76 E-QSQIAQEVGIRAMPTF 92
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A DY +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNP 64
Query: 148 HKLVARAGVMKMPTIQVNSNFFVLLT 173
+ G+ +PT+ + N V T
Sbjct: 65 GT-APKYGIRGIPTLLLFKNGEVAAT 89
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + W A+ C C + P LE+LAADY + +DV+ P
Sbjct: 9 TDADFDSKVESGVQL----VDFW-ATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 148 HKLVARAGVMKMPTIQV 164
A+ VM +PT+ V
Sbjct: 64 ST-AAKYEVMSIPTLIV 79
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ +FD + +A++ + VII + ASWC C ++ P + A + P F VDV+ +
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKF-PGAVFLKVDVDEL- 78
Query: 148 HKLVARAGVMKMPTI 162
++ + V MPT
Sbjct: 79 KEVAEKYNVEAMPTF 93
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ +D +A+ ++ + +++ + A+WC C + P E L+ DY ++ F VDV+A
Sbjct: 7 IDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA 66
Query: 146 VPHKLVARAGVMKMPTIQV 164
V + AG+ MPT V
Sbjct: 67 VA-AVAEAAGITAMPTFHV 84
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-----AVPHKLVARAGVMKMP 160
V++ + A WC C L P+LEK+ A H ++ VD++ A+ +++ A V+ M
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 161 TIQVNSNF 168
V F
Sbjct: 94 NGDVVDKF 101
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 104 ESVIIV-WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
E V++ + A WC C + P LE+L + +L+ +DV+ + + GVM +PT+
Sbjct: 17 EGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVMSIPTL 75
Query: 163 QVNSNFFVLLTS 174
V + V+ TS
Sbjct: 76 LVLKDGEVVETS 87
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ I+ + A WC C + P L++LA +Y ++ Y VD +L G+ +P+I
Sbjct: 38 DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK-EQELAGAFGIRSIPSI 96
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 100 QQLDES------VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR 153
Q DE+ V++ + A WC C + P LE++A +Y +L +DV+ P K R
Sbjct: 10 QNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP-KTAXR 68
Query: 154 AGVMKMPTI 162
V +PT+
Sbjct: 69 YRVXSIPTV 77
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 100 QQLDES------VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR 153
Q DE+ V++ + A WC C + P LE++A +Y +L +DV+ P K R
Sbjct: 9 QNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP-KTAXR 67
Query: 154 AGVMKMPTI 162
V +PT+
Sbjct: 68 YRVXSIPTV 76
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ +D +A+ ++ + +++ + A+WC C + P E L+ DY ++ F V
Sbjct: 7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV-DVD 65
Query: 146 VPHKLVARAGVMKMPTIQV 164
+ AG+ MPT V
Sbjct: 66 AVAAVAEAAGITAMPTFHV 84
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 94 RVIAEAQQLDESV--------IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
RV+A A L++ + ++ + A WC C + PK+E LA + P + F VDV+
Sbjct: 2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQ 60
Query: 146 VPHKLVARAGVMKMPTI 162
+ A+ V MPT
Sbjct: 61 -NEEAAAKYSVTAMPTF 76
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVN 165
V+ + + + C+ L P LE LAA YH + +D +A + A+ G+ +PT+ +
Sbjct: 29 VLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDA-EQXIAAQFGLRAIPTVYLF 87
Query: 166 SN 167
N
Sbjct: 88 QN 89
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ V++ WC C + PK EKLA +Y + F +D N L G+ +PT
Sbjct: 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRVVPTF 83
Query: 163 QV 164
++
Sbjct: 84 KI 85
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ V++ WC C + PK EKLA +Y + F +D N L G+ +PT
Sbjct: 37 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRVVPTF 95
Query: 163 QV 164
++
Sbjct: 96 KI 97
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ +FD +A + + VII + ASWC C + P + A + P F VDV+ +
Sbjct: 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF-PGAIFLKVDVDEL- 70
Query: 148 HKLVARA-GVMKMPTI 162
K VA A V MPT
Sbjct: 71 -KDVAEAYNVEAMPTF 85
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 18/92 (19%)
Query: 85 PIGSESQFDRVIAEAQQ---LDES--VIIVWMASWCRKCIYLKPKLEKLAA-----DYHP 134
P+GSE V+A+ LD++ V+I + A WC C L PK E+L A ++
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 135 RLRFYNVDVNA--VPHKLVARAGVMKMPTIQV 164
R+ VD A VP + + PTI++
Sbjct: 62 RVVIAKVDATANDVPDE------IQGFPTIKL 87
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDVN
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVND 61
Query: 146 VPHKLVARAGVMKMPTIQ 163
+ + V MPT Q
Sbjct: 62 C-QDVASECEVKCMPTFQ 78
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 104 ESVIIV-WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
E V++ + A WC + P LE+L + +L+ +DV+ + + GVM +PT+
Sbjct: 17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVMSIPTL 75
Query: 163 QVNSNFFVLLTS 174
V + V+ TS
Sbjct: 76 LVLKDGEVVETS 87
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMP 160
Q D +I + A WC C P + AA+ ++RF V+ A P L R + +P
Sbjct: 53 QDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP-ALSTRFRIRSIP 111
Query: 161 TIQVNSN 167
TI + N
Sbjct: 112 TIXLYRN 118
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 104 ESVIIV-WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
E V++ + A WC + P LE+L + +L+ +DV+ + + GVM +PT+
Sbjct: 17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVMSIPTL 75
Query: 163 QVNSNFFVLLTS 174
V + V+ TS
Sbjct: 76 LVLKDGEVVETS 87
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAA---DYHPRLRFYNVDVN 144
++ FD +A+ ++V++ + A WC C P+ EK+A+ D P + +D
Sbjct: 23 NDGNFDNFVADK----DTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT 78
Query: 145 AVPHKLVARAGVMKMPTIQV 164
+ L ++ V PTI++
Sbjct: 79 SA-SMLASKFDVSGYPTIKI 97
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQ 163
+ + + V MPT Q
Sbjct: 62 C-QDVASESEVKSMPTFQ 78
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA---ADYHPRLRFYNVDVN 144
+++ FD +A+ ++V++ + A WC C P+ EK+A D P + +D
Sbjct: 21 NDANFDNFVADK----DTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT 76
Query: 145 AVPHKLVARAGVMKMPTIQV 164
+ L +R V PTI++
Sbjct: 77 SA-SVLASRFDVSGYPTIKI 95
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQ 163
+ + V MPT Q
Sbjct: 62 C-QDVASECEVKSMPTFQ 78
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++++F+ + +A+Q V++ + ASWC C + P + A Y RL+ ++++ P
Sbjct: 13 TDAEFESEVLKAEQ---PVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP 69
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
+ S Q+ I EA + V+I + ASWC C + P LA + P F VDV+
Sbjct: 17 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF-PNAVFLKVDVDE 75
Query: 146 VPHKLVARAGVMKMPT 161
+ + + V MPT
Sbjct: 76 L-KPIAEQFSVEAMPT 90
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
+++ + A WC+ C +++KL Y R+ VD++ L + V +PTI
Sbjct: 45 IVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK-NESLARKFSVKSLPTI 100
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 88 SESQFDRVIAEAQQLDESVIIVW-MASWCRKCIYLKPKLEKLAADY 132
S + D + + V+I+W MA+WC C+Y+ L++L Y
Sbjct: 21 SLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKY 66
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQVNSN 167
+ + G+ +PT+ + N
Sbjct: 62 A-QDVAPKYGIRGIPTLLLFKN 82
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQ 163
+ + A V PT Q
Sbjct: 62 -AQDVASEAEVKATPTFQ 78
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQ 163
+ + V MPT Q
Sbjct: 62 C-QDVASECEVKCMPTFQ 78
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQ 163
+ + V MPT Q
Sbjct: 62 C-QDVASEXEVKCMPTFQ 78
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
D+ V++ WC + PK EKLA +Y + F +D N L G+ +PT
Sbjct: 24 DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRVVPTF 82
Query: 163 QV 164
++
Sbjct: 83 KI 84
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146
S QF +++E + + + W A WC C ++ +EK+A ++ P ++F VD +
Sbjct: 26 SVEQFRNIMSE-----DILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADN- 78
Query: 147 PHKLVARAGVMKMPT 161
++V++ V+++PT
Sbjct: 79 NSEIVSKCRVLQLPT 93
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWM----ASWCRKCIYLKPKLEKLAADYHP----RLRFY 139
++ FD+ + +++ VWM A WC C L+P+ A++ +++
Sbjct: 13 TDDSFDKNVLDSED-------VWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLA 65
Query: 140 NVDVNAVPHKLVARAGVMKMPTIQV 164
VD V L +R G+ PTI++
Sbjct: 66 AVDAT-VNQVLASRYGIRGFPTIKI 89
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
V++ + A+WC C + P LE++A + L +DV+ P
Sbjct: 28 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 70
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
V++ + A+WC C + P LE++A + L +DV+ P
Sbjct: 33 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 75
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 99 AQQLDES----VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA 154
+QL+E+ V+I + A+WC C + PKLE+L+ + F VDV+ +
Sbjct: 12 TKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVDEC-EDIAQDN 69
Query: 155 GVMKMPTI 162
+ MPT
Sbjct: 70 QIACMPTF 77
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161
V++ + A+WC C + PKL +L+ + + VDV+ + + MPT
Sbjct: 23 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC-EDIAMEYNISSMPT 77
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161
V++ + A+WC C + PKL +L+ + + VDV+ + + MPT
Sbjct: 28 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC-EDIAMEYNISSMPT 82
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQ 163
+ + V PT Q
Sbjct: 62 C-QDVASECEVKCTPTFQ 78
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQ 163
+ + + V MPT Q
Sbjct: 62 -SQDVASESEVKSMPTFQ 78
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQ 163
+ + V +MPT Q
Sbjct: 62 C-QDVASECEVKRMPTFQ 78
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL----EKLAADYHPRLRFYNVDVNAV 146
FD ++ ++ V+I + A WC C L+PK EKL+ D + + + N V
Sbjct: 36 NFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDV 92
Query: 147 PHKLVARAGVMKMPTI 162
P R PTI
Sbjct: 93 PSPYEVRG----FPTI 104
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 87 GSESQFDRVIAEAQQLDES----VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
GS Q + A + LD + V++ + A+WC +KP L+ Y + F VD
Sbjct: 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVD 69
Query: 143 VNAVPHKLVARAGVMKMPTIQ 163
V+ + + V MPT Q
Sbjct: 70 VDDC-QDVASECEVKSMPTFQ 89
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 30.0 bits (66), Expect = 0.61, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 16/130 (12%)
Query: 33 RILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQF 92
R++ I +++ S +G + N + EG +K L+ED A + PL +E++
Sbjct: 208 RVVKIMGGSLSNSTVIKGMVFN----REPEGHVKSLSEDKKHKVAVFTCPLDIANTETKG 263
Query: 93 DRVIAEAQQL------DESVIIVWM---ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
++ AQ++ +E I M A +CI + +LA Y R Y + V
Sbjct: 264 TVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNR---YGILV 320
Query: 144 NAVPHKLVAR 153
VP K R
Sbjct: 321 LKVPSKFELR 330
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 96 IAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVA 152
AEA + +++ + A WC C L P+ K A +R VD L
Sbjct: 17 FAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-ESDLAQ 75
Query: 153 RAGVMKMPTIQVNSN 167
+ GV PTI+ N
Sbjct: 76 QYGVRGYPTIKFFRN 90
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL----EKLAADYHPRLRFYNVDVNAVP 147
FD ++ ++ V+I + A WC C L+PK EKL+ D + + + N VP
Sbjct: 362 FDEIV---NNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP 418
Query: 148 HKLVARAGVMKMPTI 162
R PTI
Sbjct: 419 SPYEVRG----FPTI 429
>pdb|1RW3|A Chain A, The Crystal Structure Of The Monomeric Reverse
Transcriptase From Moloney Murine Leukemia Virus
Length = 455
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF 138
F+ + E Q + V+ + W R YL KL+ +AA + P LR
Sbjct: 347 FELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRM 393
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
+ S Q+ I EA + V+I + ASWC + P LA + P F VDV+
Sbjct: 20 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKF-PNAVFLKVDVDE 78
Query: 146 VPHKLVARAGVMKMPTI 162
+ + + V MPT
Sbjct: 79 L-KPIAEQFSVEAMPTF 94
>pdb|1TD6|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Mp506MPN330 (GI: 1674200)FROM MYCOPLASMA PNEUMONIAE
Length = 306
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 52 IDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWM 111
++++ + KH S KEL E +D H LT QFD+V+ +Q D
Sbjct: 21 VNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFL-HQFDKVMELVKQKD----FKTA 75
Query: 112 ASWCRKCIYLKPKLEKLAADYHPR--LRFYNVDVNAVPHKLVAR--AGVMKMPTIQV 164
S C E+LAA Y P+ + F+ + V H L+ + A + +P ++
Sbjct: 76 QSRCE---------EELAAPYLPKPLVSFFQSLLQLVNHDLLEQQNAALASLPAAKI 123
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
I S++ F + A D+ V++ + A+WC +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPAKMIKPFFHSLSEKY-SNVIFLEVDVDD 61
Query: 146 VPHKLVARAGVMKMPTIQ 163
+ + A V PT Q
Sbjct: 62 -AQDVASEAEVKATPTFQ 78
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
+ ++ + C C + P LE+L +Y FY VDV L R + +P I
Sbjct: 24 ACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE-EKTLFQRFSLKGVPQI 80
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 100 QQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKM 159
Q ++ V++ + A+WC C + P ++L+ Y F VDV+ + + + + M
Sbjct: 30 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVKVDVDKL-EETARKYNISAM 86
Query: 160 PT 161
PT
Sbjct: 87 PT 88
>pdb|4HKQ|A Chain A, Protein Dna Complex
Length = 681
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLR 137
F+ + E Q + V+ + W R YL KL+ +AA + P LR
Sbjct: 376 FELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLR 421
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF 138
+ I L GS ++V + Q + S++I + A WC+ C +K + Y+ L
Sbjct: 21 IYIELKNTGS---LNQVFSSTQ--NSSIVIKFGAVWCKPCNKIKEYFKNQLNYYYVTLV- 74
Query: 139 YNVDVNAVPHKLVARAGVMKMPTIQVNSN 167
++DV+ P KL + + +PT + N
Sbjct: 75 -DIDVDIHP-KLNDQHNIKALPTFEFYFN 101
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 100 QQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKM 159
Q ++ V++ + A+WC C + P ++L+ Y F VDV+ + + + + M
Sbjct: 21 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVKVDVDKL-EETARKYNISAM 77
Query: 160 PT 161
PT
Sbjct: 78 PT 79
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
V++ + A+WC + P LE++A + L +DV+ P
Sbjct: 30 VLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPE 72
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 105 SVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162
+V + + A WC C L P +KL Y H + +D A V V PT+
Sbjct: 269 NVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA---NEVEAVKVHSFPTL 325
Query: 163 Q 163
+
Sbjct: 326 K 326
>pdb|2B4G|A Chain A, Dihydroorotate Dehydrogenase
pdb|2B4G|B Chain B, Dihydroorotate Dehydrogenase
pdb|2B4G|C Chain C, Dihydroorotate Dehydrogenase
pdb|2B4G|D Chain D, Dihydroorotate Dehydrogenase
Length = 317
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 24 QSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELN 69
Q+ D P LS+S ++ +SV + ++ +TK +G+I ELN
Sbjct: 90 QTHDYSRKPLFLSMSGLSVEESVEM---VKKLVPITKEKGTILELN 132
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY 132
I S++ F + A D+ V++ + A+WC C +KP L+ Y
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 75 DHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAAD 131
D ++P T ++ +R + + D+ +I + ASWC C+ + EK A D
Sbjct: 10 DAGTATVPHTXSTXKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQD 66
>pdb|1MDO|A Chain A, Crystal Structure Of Arnb Aminotransferase With Pyridomine
5' Phosphate
Length = 393
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 80 SIPLTPIGSESQFDRVIAEAQQL 102
S+PL P +ES FDRVI Q+
Sbjct: 360 SLPLFPDXTESDFDRVITALHQI 382
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,878,894
Number of Sequences: 62578
Number of extensions: 182712
Number of successful extensions: 554
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 85
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)