Query 030610
Match_columns 174
No_of_seqs 218 out of 1575
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 16:21:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02954 DIM1 Dim1 family; Dim1 99.9 1.5E-24 3.3E-29 151.0 12.0 82 89-173 2-83 (114)
2 KOG0910 Thioredoxin-like prote 99.9 1.4E-24 3.1E-29 155.9 9.6 85 84-172 45-129 (150)
3 PHA02278 thioredoxin-like prot 99.9 3.2E-23 6.9E-28 142.6 11.4 82 87-172 2-86 (103)
4 cd02985 TRX_CDSP32 TRX family, 99.9 5.2E-23 1.1E-27 141.6 12.1 82 88-172 2-85 (103)
5 KOG0907 Thioredoxin [Posttrans 99.9 1.3E-22 2.8E-27 140.0 9.8 81 91-173 9-89 (106)
6 PLN00410 U5 snRNP protein, DIM 99.9 3.8E-22 8.2E-27 143.9 11.7 87 81-170 3-90 (142)
7 cd02986 DLP Dim1 family, Dim1- 99.9 5.1E-22 1.1E-26 137.5 11.2 80 89-171 2-81 (114)
8 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3E-22 6.5E-27 139.9 10.2 81 89-171 16-97 (113)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 4.7E-22 1E-26 136.0 10.3 78 89-171 8-85 (101)
10 cd02948 TRX_NDPK TRX domain, T 99.9 1.3E-21 2.7E-26 134.4 11.8 82 85-172 3-85 (102)
11 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1.4E-21 3.1E-26 136.6 11.3 86 82-173 5-90 (113)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2.2E-21 4.7E-26 133.2 10.5 80 88-171 7-87 (104)
13 cd02956 ybbN ybbN protein fami 99.9 2.9E-21 6.4E-26 130.6 11.0 79 91-172 2-80 (96)
14 COG3118 Thioredoxin domain-con 99.9 3.1E-21 6.8E-26 152.1 10.6 87 83-172 25-111 (304)
15 cd03065 PDI_b_Calsequestrin_N 99.9 5E-21 1.1E-25 134.9 9.9 80 89-172 16-101 (120)
16 cd02957 Phd_like Phosducin (Ph 99.9 6E-21 1.3E-25 133.3 9.9 86 83-173 6-91 (113)
17 PF00085 Thioredoxin: Thioredo 99.8 2E-20 4.2E-25 127.3 11.7 81 88-172 5-85 (103)
18 cd02965 HyaE HyaE family; HyaE 99.8 9.1E-21 2E-25 131.2 10.1 80 89-173 17-98 (111)
19 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.4E-20 2.9E-25 130.3 10.3 78 89-171 8-91 (108)
20 cd02999 PDI_a_ERp44_like PDIa 99.8 1.4E-20 2.9E-25 128.9 10.0 75 90-168 7-82 (100)
21 cd02962 TMX2 TMX2 family; comp 99.8 2.6E-20 5.7E-25 136.4 12.0 82 89-173 35-123 (152)
22 cd02963 TRX_DnaJ TRX domain, D 99.8 1.8E-20 3.9E-25 130.6 10.3 83 88-172 10-93 (111)
23 cd02984 TRX_PICOT TRX domain, 99.8 3.7E-20 8.1E-25 125.2 11.6 83 88-173 1-83 (97)
24 PTZ00051 thioredoxin; Provisio 99.8 3.6E-20 7.8E-25 125.6 11.0 85 83-173 2-86 (98)
25 cd02987 Phd_like_Phd Phosducin 99.8 5.5E-20 1.2E-24 137.8 11.4 90 80-173 61-150 (175)
26 PRK10996 thioredoxin 2; Provis 99.8 1.3E-19 2.8E-24 131.1 12.0 81 88-173 41-121 (139)
27 PRK09381 trxA thioredoxin; Pro 99.8 1.4E-19 3E-24 125.2 11.4 86 83-173 5-90 (109)
28 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.3E-19 2.8E-24 123.5 10.4 78 89-172 7-87 (102)
29 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.8E-19 3.8E-24 124.4 10.1 77 89-169 7-85 (109)
30 cd02994 PDI_a_TMX PDIa family, 99.8 2.2E-19 4.8E-24 122.5 10.2 75 89-170 8-83 (101)
31 cd02997 PDI_a_PDIR PDIa family 99.8 5.5E-19 1.2E-23 120.7 10.5 79 89-172 7-89 (104)
32 KOG0908 Thioredoxin-like prote 99.8 1.4E-19 3E-24 139.1 8.0 87 83-173 3-89 (288)
33 cd02950 TxlA TRX-like protein 99.8 6.3E-19 1.4E-23 128.0 10.2 81 89-173 10-92 (142)
34 PTZ00443 Thioredoxin domain-co 99.8 1.1E-18 2.3E-23 135.3 11.4 83 89-172 37-120 (224)
35 cd03001 PDI_a_P5 PDIa family, 99.8 1.3E-18 2.9E-23 118.6 10.5 77 89-169 7-83 (103)
36 cd02949 TRX_NTR TRX domain, no 99.8 2.4E-18 5.2E-23 116.9 11.3 78 91-172 4-81 (97)
37 TIGR01068 thioredoxin thioredo 99.8 2.7E-18 5.9E-23 116.2 11.2 80 89-172 3-82 (101)
38 cd02952 TRP14_like Human TRX-r 99.8 1.8E-18 3.9E-23 121.6 10.4 84 86-172 6-104 (119)
39 cd02953 DsbDgamma DsbD gamma f 99.8 8.3E-19 1.8E-23 120.4 8.5 79 90-172 2-88 (104)
40 cd02993 PDI_a_APS_reductase PD 99.8 2E-18 4.3E-23 119.8 10.4 79 89-169 8-89 (109)
41 cd03000 PDI_a_TMX3 PDIa family 99.8 2.8E-18 6E-23 117.9 9.8 76 89-170 6-84 (104)
42 TIGR01126 pdi_dom protein disu 99.8 4.6E-18 9.9E-23 115.5 9.7 77 89-170 3-81 (102)
43 cd02992 PDI_a_QSOX PDIa family 99.8 6.4E-18 1.4E-22 118.3 10.0 79 89-171 8-91 (114)
44 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 8.6E-18 1.9E-22 114.6 9.7 76 89-169 7-84 (104)
45 cd02961 PDI_a_family Protein D 99.7 2E-17 4.3E-22 111.3 10.1 75 89-168 5-81 (101)
46 cd02998 PDI_a_ERp38 PDIa famil 99.7 1.5E-17 3.2E-22 113.5 9.6 77 89-169 7-86 (105)
47 cd02975 PfPDO_like_N Pyrococcu 99.7 1.6E-17 3.5E-22 116.1 9.8 68 101-170 20-87 (113)
48 cd02988 Phd_like_VIAF Phosduci 99.7 2.5E-17 5.3E-22 125.1 10.2 87 80-173 81-167 (192)
49 TIGR01295 PedC_BrcD bacterioci 99.7 4.1E-17 8.8E-22 115.6 10.7 80 88-173 12-105 (122)
50 cd02959 ERp19 Endoplasmic reti 99.7 2.4E-17 5.2E-22 115.9 7.9 82 91-172 7-91 (117)
51 KOG0190 Protein disulfide isom 99.7 1.1E-17 2.4E-22 141.0 7.1 77 89-170 32-111 (493)
52 cd02951 SoxW SoxW family; SoxW 99.7 7.6E-17 1.7E-21 114.2 9.9 80 89-172 3-100 (125)
53 TIGR00424 APS_reduc 5'-adenyly 99.7 8.9E-17 1.9E-21 135.8 10.7 81 88-169 357-439 (463)
54 cd02947 TRX_family TRX family; 99.7 2.7E-16 5.8E-21 103.8 10.1 76 91-172 2-77 (93)
55 KOG0190 Protein disulfide isom 99.7 7.2E-17 1.6E-21 136.1 7.7 75 89-169 373-449 (493)
56 PLN02309 5'-adenylylsulfate re 99.7 3E-16 6.6E-21 132.5 10.8 80 88-169 351-433 (457)
57 cd03007 PDI_a_ERp29_N PDIa fam 99.7 3.5E-16 7.6E-21 109.3 7.9 72 89-169 8-91 (116)
58 PTZ00062 glutaredoxin; Provisi 99.7 8.1E-16 1.8E-20 117.6 9.7 74 87-173 4-77 (204)
59 TIGR01130 ER_PDI_fam protein d 99.7 7.3E-16 1.6E-20 130.3 10.5 78 88-170 7-87 (462)
60 PTZ00102 disulphide isomerase; 99.6 8.6E-16 1.9E-20 130.8 10.8 78 89-171 39-119 (477)
61 cd02955 SSP411 TRX domain, SSP 99.6 1.8E-15 3.9E-20 107.3 10.4 80 89-173 5-96 (124)
62 cd03008 TryX_like_RdCVF Trypar 99.6 3.3E-15 7.2E-20 108.7 10.1 73 101-173 23-128 (146)
63 PTZ00102 disulphide isomerase; 99.6 3.2E-15 7E-20 127.3 11.1 79 89-171 364-444 (477)
64 KOG4277 Uncharacterized conser 99.6 1.2E-15 2.6E-20 120.7 6.1 71 101-172 41-114 (468)
65 PRK00293 dipZ thiol:disulfide 99.6 6.6E-15 1.4E-19 128.2 11.3 89 82-171 453-548 (571)
66 TIGR00411 redox_disulf_1 small 99.6 8.3E-15 1.8E-19 95.9 9.1 62 106-170 2-63 (82)
67 cd02982 PDI_b'_family Protein 99.6 6.5E-15 1.4E-19 100.5 8.8 69 101-170 10-82 (103)
68 PF13905 Thioredoxin_8: Thiore 99.6 2.6E-14 5.6E-19 96.2 10.1 68 103-170 1-95 (95)
69 cd03009 TryX_like_TryX_NRX Try 99.6 1.7E-14 3.6E-19 102.8 9.5 73 101-173 16-115 (131)
70 cd02964 TryX_like_family Trypa 99.6 1.7E-14 3.8E-19 103.1 9.6 73 101-173 15-115 (132)
71 cd02973 TRX_GRX_like Thioredox 99.6 2.6E-14 5.6E-19 90.4 8.4 63 106-172 2-64 (67)
72 KOG0912 Thiol-disulfide isomer 99.5 1.2E-14 2.6E-19 114.9 7.3 78 90-172 4-86 (375)
73 TIGR00412 redox_disulf_2 small 99.5 3.7E-14 7.9E-19 92.3 8.1 59 108-172 3-61 (76)
74 PHA02125 thioredoxin-like prot 99.5 4.3E-14 9.4E-19 91.6 7.9 55 107-171 2-56 (75)
75 TIGR01130 ER_PDI_fam protein d 99.5 4.4E-14 9.6E-19 119.4 9.2 76 89-170 353-431 (462)
76 TIGR02187 GlrX_arch Glutaredox 99.5 1.4E-13 3E-18 106.4 9.8 67 103-171 19-90 (215)
77 cd03010 TlpA_like_DsbE TlpA-li 99.5 2.7E-13 5.9E-18 96.0 10.2 70 101-173 23-116 (127)
78 TIGR02187 GlrX_arch Glutaredox 99.5 3.2E-13 7E-18 104.3 9.9 67 102-170 132-198 (215)
79 TIGR02740 TraF-like TraF-like 99.5 5.3E-13 1.2E-17 106.5 10.8 68 101-171 164-243 (271)
80 PF13098 Thioredoxin_2: Thiore 99.5 8E-14 1.7E-18 96.5 5.2 73 100-172 2-97 (112)
81 TIGR02738 TrbB type-F conjugat 99.5 3.7E-13 8.1E-18 98.8 9.0 68 101-170 48-131 (153)
82 PRK14018 trifunctional thiored 99.5 3.6E-13 7.7E-18 115.4 10.1 71 101-172 54-154 (521)
83 cd02967 mauD Methylamine utili 99.5 5.6E-13 1.2E-17 92.4 9.3 71 102-173 20-111 (114)
84 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 1E-12 2.3E-17 88.0 9.7 68 101-172 10-77 (89)
85 KOG0191 Thioredoxin/protein di 99.4 2.6E-13 5.7E-18 113.2 7.9 67 101-168 45-111 (383)
86 PF13899 Thioredoxin_7: Thiore 99.4 4.4E-13 9.5E-18 88.3 6.9 74 91-166 5-81 (82)
87 PRK15412 thiol:disulfide inter 99.4 1.8E-12 4E-17 97.9 9.8 70 101-173 66-158 (185)
88 cd02960 AGR Anterior Gradient 99.4 1.4E-12 3E-17 92.9 8.2 81 90-172 10-94 (130)
89 cd02966 TlpA_like_family TlpA- 99.4 3E-12 6.4E-17 87.4 9.4 72 101-173 17-113 (116)
90 cd03012 TlpA_like_DipZ_like Tl 99.4 3.9E-12 8.5E-17 90.1 9.4 71 102-173 22-121 (126)
91 TIGR00385 dsbE periplasmic pro 99.4 7.4E-12 1.6E-16 93.6 10.3 69 101-173 61-153 (173)
92 cd02958 UAS UAS family; UAS is 99.4 9E-12 1.9E-16 86.9 9.8 84 90-173 4-93 (114)
93 PLN02919 haloacid dehalogenase 99.3 5.2E-12 1.1E-16 116.8 9.8 71 102-173 419-518 (1057)
94 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 8.8E-12 1.9E-16 87.5 8.6 69 101-172 18-107 (123)
95 PRK03147 thiol-disulfide oxido 99.3 1.9E-11 4.1E-16 90.7 9.8 72 101-172 59-153 (173)
96 PF08534 Redoxin: Redoxin; In 99.3 1.5E-11 3.3E-16 89.0 9.1 72 101-173 26-130 (146)
97 COG4232 Thiol:disulfide interc 99.3 2.1E-11 4.6E-16 104.3 9.7 84 84-170 457-547 (569)
98 KOG0191 Thioredoxin/protein di 99.2 1.7E-11 3.7E-16 102.3 7.3 78 89-170 151-230 (383)
99 PRK13728 conjugal transfer pro 99.2 5.2E-11 1.1E-15 89.3 8.6 63 107-171 73-150 (181)
100 TIGR02661 MauD methylamine deh 99.2 6.7E-11 1.5E-15 89.7 9.3 71 101-172 72-161 (189)
101 smart00594 UAS UAS domain. 99.2 1.9E-10 4.1E-15 81.3 10.2 79 90-168 14-97 (122)
102 KOG1731 FAD-dependent sulfhydr 99.2 1.1E-11 2.4E-16 105.3 4.0 76 89-167 46-125 (606)
103 KOG2501 Thioredoxin, nucleored 99.2 7.8E-11 1.7E-15 85.7 6.9 72 101-172 31-130 (157)
104 PRK11509 hydrogenase-1 operon 99.2 3.1E-10 6.7E-15 80.9 9.8 79 90-173 25-106 (132)
105 COG0526 TrxA Thiol-disulfide i 99.2 1.6E-10 3.4E-15 78.2 8.1 67 103-170 32-101 (127)
106 cd02969 PRX_like1 Peroxiredoxi 99.1 8.2E-10 1.8E-14 82.1 9.7 72 102-173 24-125 (171)
107 PTZ00056 glutathione peroxidas 99.1 6.8E-10 1.5E-14 84.9 9.2 43 102-144 38-81 (199)
108 PF03190 Thioredox_DsbH: Prote 99.1 4E-10 8.6E-15 83.0 7.4 79 89-172 27-117 (163)
109 KOG0914 Thioredoxin-like prote 99.1 2.1E-10 4.5E-15 87.2 5.5 84 87-173 130-220 (265)
110 PF02114 Phosducin: Phosducin; 99.0 4.3E-10 9.2E-15 89.4 6.7 90 80-173 124-213 (265)
111 PF06110 DUF953: Eukaryotic pr 99.0 4.1E-09 8.8E-14 74.0 9.6 85 87-171 3-102 (119)
112 cd01659 TRX_superfamily Thiore 99.0 2.4E-09 5.2E-14 64.6 7.5 60 107-168 1-63 (69)
113 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 2.7E-09 5.9E-14 74.6 8.5 70 102-172 24-123 (124)
114 TIGR01626 ytfJ_HI0045 conserve 99.0 1.2E-09 2.6E-14 82.3 7.0 69 101-173 57-162 (184)
115 cd00340 GSH_Peroxidase Glutath 99.0 3.1E-09 6.7E-14 77.7 8.9 42 102-144 21-63 (152)
116 PLN02399 phospholipid hydroper 99.0 3.7E-09 8E-14 82.7 9.6 43 102-144 98-141 (236)
117 TIGR02200 GlrX_actino Glutared 99.0 1.8E-09 3.9E-14 69.4 6.0 58 107-172 2-64 (77)
118 KOG1672 ATP binding protein [P 99.0 2.2E-09 4.9E-14 80.2 7.1 89 77-171 62-150 (211)
119 TIGR02196 GlrX_YruB Glutaredox 99.0 5E-09 1.1E-13 66.3 7.9 57 107-171 2-61 (74)
120 KOG3414 Component of the U4/U6 98.9 1.1E-08 2.4E-13 71.4 9.5 86 82-170 4-89 (142)
121 PLN02412 probable glutathione 98.9 6.7E-09 1.4E-13 77.2 8.9 43 102-144 28-71 (167)
122 cd02970 PRX_like2 Peroxiredoxi 98.9 1.8E-08 4E-13 72.5 9.8 70 102-172 23-144 (149)
123 TIGR02180 GRX_euk Glutaredoxin 98.8 1.5E-08 3.1E-13 66.3 7.1 62 107-172 1-66 (84)
124 PRK00522 tpx lipid hydroperoxi 98.8 2.6E-08 5.6E-13 74.0 8.9 71 102-173 43-146 (167)
125 PF11009 DUF2847: Protein of u 98.8 9.9E-08 2.1E-12 65.3 10.9 88 84-173 2-93 (105)
126 TIGR02540 gpx7 putative glutat 98.8 1.3E-08 2.7E-13 74.5 6.9 43 101-143 20-63 (153)
127 cd03017 PRX_BCP Peroxiredoxin 98.8 3.3E-08 7.2E-13 70.6 8.4 71 102-173 22-125 (140)
128 KOG3425 Uncharacterized conser 98.8 3.9E-08 8.4E-13 68.1 7.9 80 87-167 10-104 (128)
129 PF14595 Thioredoxin_9: Thiore 98.8 2E-08 4.4E-13 71.6 6.8 71 101-173 39-113 (129)
130 PF02966 DIM1: Mitosis protein 98.8 2.1E-07 4.6E-12 65.7 11.2 84 84-171 3-87 (133)
131 cd03014 PRX_Atyp2cys Peroxired 98.8 5.8E-08 1.3E-12 69.9 8.7 70 102-172 25-124 (143)
132 TIGR03137 AhpC peroxiredoxin. 98.7 6.4E-08 1.4E-12 73.2 8.5 71 102-172 30-133 (187)
133 cd03018 PRX_AhpE_like Peroxire 98.7 9.6E-08 2.1E-12 69.0 9.0 70 103-173 28-129 (149)
134 COG2143 Thioredoxin-related pr 98.7 1.4E-07 3E-12 68.5 9.0 73 101-173 40-131 (182)
135 cd03015 PRX_Typ2cys Peroxiredo 98.7 9.2E-08 2E-12 71.3 8.2 71 102-172 28-134 (173)
136 PRK11200 grxA glutaredoxin 1; 98.7 1.6E-07 3.4E-12 62.0 7.9 64 106-172 2-70 (85)
137 PF13728 TraF: F plasmid trans 98.6 3.9E-07 8.5E-12 70.5 10.0 70 93-167 112-192 (215)
138 PRK09437 bcp thioredoxin-depen 98.6 2.8E-07 6.1E-12 67.2 8.2 70 102-172 29-134 (154)
139 cd02968 SCO SCO (an acronym fo 98.6 2E-07 4.4E-12 66.7 7.2 44 102-145 21-69 (142)
140 cd02971 PRX_family Peroxiredox 98.6 4.4E-07 9.6E-12 64.7 8.6 71 102-173 21-125 (140)
141 KOG0911 Glutaredoxin-related p 98.6 3.3E-08 7.1E-13 75.7 2.8 81 84-172 4-84 (227)
142 PF00462 Glutaredoxin: Glutare 98.5 1.1E-06 2.4E-11 54.0 8.5 57 107-171 1-60 (60)
143 KOG0913 Thiol-disulfide isomer 98.5 1.1E-08 2.4E-13 78.7 -1.0 75 89-170 31-106 (248)
144 cd02991 UAS_ETEA UAS family, E 98.5 9.9E-07 2.1E-11 61.8 8.9 74 91-165 5-83 (116)
145 PRK10382 alkyl hydroperoxide r 98.5 8.2E-07 1.8E-11 67.3 8.9 70 102-172 30-133 (187)
146 PTZ00256 glutathione peroxidas 98.5 2.5E-07 5.3E-12 69.8 5.5 43 102-144 39-83 (183)
147 PRK10606 btuE putative glutath 98.5 6.1E-07 1.3E-11 67.7 7.4 42 102-144 24-66 (183)
148 cd02976 NrdH NrdH-redoxin (Nrd 98.4 1.8E-06 4E-11 54.2 7.9 57 107-171 2-61 (73)
149 PRK13190 putative peroxiredoxi 98.4 1.3E-06 2.7E-11 67.0 8.1 70 102-172 26-131 (202)
150 KOG3171 Conserved phosducin-li 98.4 9.8E-07 2.1E-11 67.2 7.1 92 77-172 134-225 (273)
151 cd03419 GRX_GRXh_1_2_like Glut 98.4 1.6E-06 3.5E-11 56.3 7.1 60 107-172 2-65 (82)
152 PRK15000 peroxidase; Provision 98.4 1.8E-06 3.8E-11 66.1 8.3 71 102-172 33-139 (200)
153 PF13192 Thioredoxin_3: Thiore 98.4 3.8E-06 8.2E-11 54.3 8.2 58 109-172 4-61 (76)
154 PRK13599 putative peroxiredoxi 98.4 2.8E-06 6E-11 65.8 8.8 70 103-172 28-133 (215)
155 cd02066 GRX_family Glutaredoxi 98.3 4.5E-06 9.8E-11 52.1 7.3 58 107-172 2-62 (72)
156 PTZ00137 2-Cys peroxiredoxin; 98.3 5.1E-06 1.1E-10 66.0 9.0 71 102-172 97-202 (261)
157 TIGR02183 GRXA Glutaredoxin, G 98.3 3.6E-06 7.8E-11 55.7 6.8 63 107-172 2-69 (86)
158 TIGR02739 TraF type-F conjugat 98.3 8.6E-06 1.9E-10 64.5 9.7 69 93-166 142-221 (256)
159 TIGR02190 GlrX-dom Glutaredoxi 98.2 7.5E-06 1.6E-10 53.2 7.6 63 102-172 5-69 (79)
160 cd03016 PRX_1cys Peroxiredoxin 98.2 1.1E-05 2.4E-10 61.8 8.8 68 105-172 28-131 (203)
161 PRK13189 peroxiredoxin; Provis 98.2 1E-05 2.2E-10 62.9 8.7 71 102-172 34-140 (222)
162 PRK13191 putative peroxiredoxi 98.1 1.7E-05 3.6E-10 61.4 8.8 70 103-172 33-138 (215)
163 PTZ00253 tryparedoxin peroxida 98.1 2.4E-05 5.2E-10 59.7 8.4 71 102-172 35-141 (199)
164 PHA03050 glutaredoxin; Provisi 98.1 3E-05 6.6E-10 53.6 8.1 70 91-171 5-80 (108)
165 PRK13703 conjugal pilus assemb 98.0 4.2E-05 9E-10 60.3 9.4 71 93-166 135-214 (248)
166 TIGR02181 GRX_bact Glutaredoxi 98.0 3E-05 6.5E-10 50.1 7.0 58 107-172 1-61 (79)
167 TIGR03143 AhpF_homolog putativ 98.0 4.4E-05 9.5E-10 66.9 10.1 65 103-171 475-540 (555)
168 cd03418 GRX_GRXb_1_3_like Glut 98.0 6.5E-05 1.4E-09 47.8 8.2 58 107-172 2-63 (75)
169 cd03020 DsbA_DsbC_DsbG DsbA fa 98.0 2.5E-05 5.4E-10 59.4 7.1 65 101-171 75-184 (197)
170 PRK15317 alkyl hydroperoxide r 98.0 5.2E-05 1.1E-09 65.8 9.9 66 103-172 116-181 (517)
171 cd03027 GRX_DEP Glutaredoxin ( 98.0 6.7E-05 1.5E-09 47.8 8.0 58 107-172 3-63 (73)
172 TIGR00365 monothiol glutaredox 98.0 0.00015 3.2E-09 49.1 9.6 70 90-171 3-78 (97)
173 PRK10877 protein disulfide iso 98.0 4.3E-05 9.2E-10 59.8 7.8 66 101-171 105-214 (232)
174 cd03029 GRX_hybridPRX5 Glutare 97.9 7.2E-05 1.6E-09 47.5 7.5 58 107-172 3-62 (72)
175 TIGR02189 GlrX-like_plant Glut 97.9 3.7E-05 8E-10 52.3 6.1 57 107-171 10-72 (99)
176 COG1331 Highly conserved prote 97.9 3.3E-05 7.2E-10 67.9 7.2 80 89-172 33-123 (667)
177 TIGR02194 GlrX_NrdH Glutaredox 97.9 6.9E-05 1.5E-09 47.7 6.4 50 108-164 2-54 (72)
178 PF07449 HyaE: Hydrogenase-1 e 97.8 5.3E-05 1.2E-09 52.1 5.9 79 89-172 16-96 (107)
179 cd03028 GRX_PICOT_like Glutare 97.8 0.00012 2.7E-09 48.7 7.4 52 113-172 21-75 (90)
180 PRK10329 glutaredoxin-like pro 97.8 0.00014 3E-09 47.6 7.3 52 107-164 3-56 (81)
181 PRK10638 glutaredoxin 3; Provi 97.8 0.00021 4.6E-09 46.7 7.8 58 107-172 4-64 (83)
182 PF13848 Thioredoxin_6: Thiore 97.8 0.00049 1.1E-08 51.0 10.8 76 89-169 84-164 (184)
183 cd02972 DsbA_family DsbA famil 97.7 0.00018 4E-09 47.1 7.0 60 107-166 1-91 (98)
184 cd03019 DsbA_DsbA DsbA family, 97.7 0.00017 3.6E-09 53.3 7.0 38 102-139 14-51 (178)
185 TIGR03140 AhpF alkyl hydropero 97.7 0.00036 7.7E-09 60.6 9.8 67 102-172 116-182 (515)
186 PF01216 Calsequestrin: Calseq 97.5 0.0012 2.5E-08 54.1 9.6 78 89-172 41-126 (383)
187 KOG3170 Conserved phosducin-li 97.5 0.00052 1.1E-08 52.0 7.0 84 81-171 91-174 (240)
188 COG0695 GrxC Glutaredoxin and 97.5 0.00057 1.2E-08 44.6 6.3 52 107-164 3-59 (80)
189 cd02981 PDI_b_family Protein D 97.4 0.0018 3.9E-08 43.1 8.8 72 85-168 3-74 (97)
190 PRK10954 periplasmic protein d 97.4 0.00056 1.2E-08 52.5 6.5 40 103-142 37-79 (207)
191 cd03023 DsbA_Com1_like DsbA fa 97.4 0.00058 1.3E-08 48.9 6.0 41 101-142 3-43 (154)
192 PF05768 DUF836: Glutaredoxin- 97.3 0.00097 2.1E-08 43.5 5.8 55 107-165 2-56 (81)
193 cd02983 P5_C P5 family, C-term 97.2 0.0071 1.5E-07 43.1 10.3 81 82-167 3-90 (130)
194 PRK11657 dsbG disulfide isomer 97.2 0.0015 3.3E-08 51.7 7.4 39 101-141 115-153 (251)
195 KOG1752 Glutaredoxin and relat 97.1 0.003 6.5E-08 43.3 6.7 70 90-171 5-78 (104)
196 PTZ00062 glutaredoxin; Provisi 97.1 0.0049 1.1E-07 47.3 8.6 71 90-172 104-180 (204)
197 PRK12759 bifunctional gluaredo 97.0 0.003 6.5E-08 53.5 8.0 57 107-171 4-71 (410)
198 TIGR03143 AhpF_homolog putativ 97.0 0.0065 1.4E-07 53.3 9.6 77 89-169 354-431 (555)
199 PRK10824 glutaredoxin-4; Provi 97.0 0.0038 8.1E-08 43.6 6.6 69 90-171 6-81 (115)
200 cd03072 PDI_b'_ERp44 PDIb' fam 96.8 0.012 2.5E-07 40.8 8.1 72 89-167 6-82 (111)
201 COG1225 Bcp Peroxiredoxin [Pos 96.7 0.014 3E-07 43.0 8.3 71 101-172 28-134 (157)
202 cd03067 PDI_b_PDIR_N PDIb fami 96.7 0.016 3.5E-07 39.3 7.9 80 85-169 5-90 (112)
203 KOG2603 Oligosaccharyltransfer 96.5 0.0092 2E-07 48.2 6.7 75 89-165 47-133 (331)
204 cd03060 GST_N_Omega_like GST_N 96.5 0.02 4.3E-07 35.9 7.1 62 108-174 2-63 (71)
205 cd03073 PDI_b'_ERp72_ERp57 PDI 96.5 0.02 4.4E-07 39.6 7.5 50 116-166 31-85 (111)
206 PF13462 Thioredoxin_4: Thiore 96.5 0.013 2.7E-07 42.4 6.9 43 101-143 10-54 (162)
207 PF07912 ERp29_N: ERp29, N-ter 96.1 0.095 2.1E-06 36.9 9.1 73 90-168 12-93 (126)
208 cd03013 PRX5_like Peroxiredoxi 95.8 0.031 6.7E-07 40.9 6.0 43 102-144 29-74 (155)
209 cd03031 GRX_GRX_like Glutaredo 95.8 0.046 9.9E-07 39.8 6.8 57 107-171 2-71 (147)
210 cd02978 KaiB_like KaiB-like fa 95.2 0.1 2.2E-06 33.3 6.0 58 106-164 3-61 (72)
211 PF13417 GST_N_3: Glutathione 95.1 0.15 3.2E-06 32.2 6.6 60 109-174 1-60 (75)
212 cd03059 GST_N_SspA GST_N famil 94.7 0.21 4.6E-06 30.9 6.6 60 108-173 2-61 (73)
213 cd03051 GST_N_GTT2_like GST_N 94.6 0.087 1.9E-06 32.6 4.6 61 108-173 2-65 (74)
214 COG0278 Glutaredoxin-related p 94.3 0.18 3.9E-06 34.2 5.7 73 90-172 6-83 (105)
215 PF00837 T4_deiodinase: Iodoth 94.2 0.057 1.2E-06 42.3 3.5 61 78-142 79-141 (237)
216 cd03041 GST_N_2GST_N GST_N fam 94.0 0.47 1E-05 30.1 7.1 60 108-173 3-65 (77)
217 PRK09301 circadian clock prote 93.9 0.26 5.7E-06 33.6 5.9 62 102-164 4-66 (103)
218 TIGR02654 circ_KaiB circadian 93.8 0.29 6.2E-06 32.4 5.8 60 104-164 3-63 (87)
219 cd00570 GST_N_family Glutathio 93.7 0.41 9E-06 28.5 6.2 59 109-173 3-62 (71)
220 PHA03075 glutaredoxin-like pro 93.7 0.15 3.2E-06 35.5 4.3 36 104-143 2-37 (123)
221 cd03037 GST_N_GRX2 GST_N famil 93.5 0.33 7.2E-06 30.1 5.6 59 109-173 3-61 (71)
222 cd02977 ArsC_family Arsenate R 93.3 0.13 2.8E-06 34.9 3.7 33 108-146 2-34 (105)
223 cd03040 GST_N_mPGES2 GST_N fam 93.1 0.95 2.1E-05 28.4 7.4 61 107-173 2-64 (77)
224 cd03045 GST_N_Delta_Epsilon GS 93.0 0.84 1.8E-05 28.3 7.0 60 108-173 2-64 (74)
225 cd03036 ArsC_like Arsenate Red 92.8 0.21 4.6E-06 34.3 4.3 34 108-147 2-35 (111)
226 cd03066 PDI_b_Calsequestrin_mi 92.5 1.8 4E-05 29.0 8.5 73 83-167 2-75 (102)
227 cd03055 GST_N_Omega GST_N fami 92.5 1.1 2.5E-05 29.2 7.3 62 107-173 19-80 (89)
228 COG4545 Glutaredoxin-related p 92.5 0.23 5.1E-06 31.8 3.6 57 108-171 5-76 (85)
229 cd03035 ArsC_Yffb Arsenate Red 92.4 0.23 4.9E-06 34.0 3.9 33 108-146 2-34 (105)
230 cd03069 PDI_b_ERp57 PDIb famil 92.2 1.3 2.7E-05 30.0 7.4 69 84-165 3-71 (104)
231 PF06053 DUF929: Domain of unk 91.8 0.76 1.7E-05 36.4 6.6 58 101-166 56-113 (249)
232 PRK01655 spxA transcriptional 91.7 0.34 7.4E-06 34.5 4.3 35 107-147 2-36 (131)
233 PF13743 Thioredoxin_5: Thiore 91.6 0.41 8.8E-06 35.8 4.8 34 109-142 2-35 (176)
234 TIGR01617 arsC_related transcr 90.2 0.72 1.6E-05 31.9 4.7 34 108-147 2-35 (117)
235 cd03056 GST_N_4 GST_N family, 89.7 0.69 1.5E-05 28.4 4.0 61 108-174 2-65 (73)
236 PRK12559 transcriptional regul 89.6 0.76 1.6E-05 32.7 4.5 34 107-146 2-35 (131)
237 cd03052 GST_N_GDAP1 GST_N fami 89.1 3.5 7.7E-05 25.8 7.0 61 108-174 2-65 (73)
238 cd02974 AhpF_NTD_N Alkyl hydro 88.7 5.4 0.00012 26.7 8.6 64 89-168 7-70 (94)
239 cd03032 ArsC_Spx Arsenate Redu 88.4 1.2 2.6E-05 30.8 4.7 34 107-146 2-35 (115)
240 PF02630 SCO1-SenC: SCO1/SenC; 87.8 3.5 7.6E-05 30.6 7.3 46 101-146 50-99 (174)
241 PRK13344 spxA transcriptional 87.7 1.2 2.7E-05 31.6 4.5 34 107-146 2-35 (132)
242 PF09673 TrbC_Ftype: Type-F co 87.5 3.8 8.3E-05 28.3 6.8 71 89-167 10-80 (113)
243 KOG2640 Thioredoxin [Function 87.5 0.11 2.4E-06 42.0 -1.0 64 101-166 74-138 (319)
244 PF07689 KaiB: KaiB domain; I 86.3 0.25 5.5E-06 32.3 0.3 53 110-163 3-56 (82)
245 COG1999 Uncharacterized protei 84.8 6.5 0.00014 30.1 7.5 65 101-165 65-137 (207)
246 cd03068 PDI_b_ERp72 PDIb famil 84.4 10 0.00023 25.7 8.7 71 83-165 2-73 (107)
247 cd03061 GST_N_CLIC GST_N famil 84.2 5.8 0.00013 26.4 6.1 56 112-173 19-74 (91)
248 cd03025 DsbA_FrnE_like DsbA fa 83.4 1.8 4E-05 32.0 3.9 30 107-136 3-32 (193)
249 cd03049 GST_N_3 GST_N family, 83.1 4.6 0.0001 24.8 5.2 62 109-173 3-64 (73)
250 TIGR03140 AhpF alkyl hydropero 82.6 8.9 0.00019 33.4 8.3 66 89-169 7-72 (515)
251 cd03053 GST_N_Phi GST_N family 82.5 3.8 8.2E-05 25.4 4.6 61 107-173 2-65 (76)
252 TIGR02742 TrbC_Ftype type-F co 82.2 7.1 0.00015 27.8 6.3 72 89-169 11-82 (130)
253 COG3019 Predicted metal-bindin 81.7 4.9 0.00011 29.0 5.2 48 103-157 24-71 (149)
254 COG1651 DsbG Protein-disulfide 80.6 3.1 6.7E-05 32.3 4.4 30 103-132 84-113 (244)
255 PRK09481 sspA stringent starva 79.9 11 0.00023 28.5 7.1 64 105-174 9-72 (211)
256 KOG2244 Highly conserved prote 79.1 2.1 4.6E-05 37.6 3.2 72 89-165 102-184 (786)
257 cd02990 UAS_FAF1 UAS family, F 78.6 22 0.00047 25.5 9.2 66 100-165 18-103 (136)
258 cd03058 GST_N_Tau GST_N family 77.4 14 0.0003 22.7 6.9 59 109-173 3-62 (74)
259 PRK15317 alkyl hydroperoxide r 76.4 17 0.00038 31.6 8.2 65 89-169 7-71 (517)
260 KOG2507 Ubiquitin regulatory p 76.1 24 0.00051 30.3 8.4 81 91-172 7-92 (506)
261 PF04592 SelP_N: Selenoprotein 75.4 6.7 0.00014 30.8 4.7 44 101-144 24-71 (238)
262 cd03033 ArsC_15kD Arsenate Red 74.2 6.5 0.00014 27.1 4.1 34 107-146 2-35 (113)
263 COG3531 Predicted protein-disu 73.0 3.2 6.9E-05 31.8 2.4 23 149-171 165-187 (212)
264 PF01323 DSBA: DSBA-like thior 72.0 11 0.00024 27.7 5.2 37 106-142 1-38 (193)
265 PF13462 Thioredoxin_4: Thiore 71.8 4.4 9.5E-05 28.9 2.9 22 149-172 127-148 (162)
266 PF13743 Thioredoxin_5: Thiore 71.7 3.9 8.4E-05 30.4 2.6 18 149-166 138-155 (176)
267 KOG0911 Glutaredoxin-related p 71.4 18 0.00039 28.2 6.2 54 112-172 151-206 (227)
268 cd03050 GST_N_Theta GST_N fami 69.7 12 0.00025 23.2 4.3 60 108-173 2-64 (76)
269 cd03023 DsbA_Com1_like DsbA fa 69.0 6.2 0.00013 27.6 3.2 21 149-171 120-140 (154)
270 PF00255 GSHPx: Glutathione pe 68.7 25 0.00055 24.1 6.0 45 101-146 19-64 (108)
271 cd03034 ArsC_ArsC Arsenate Red 64.2 13 0.00028 25.4 3.9 33 108-146 2-34 (112)
272 TIGR00014 arsC arsenate reduct 64.1 13 0.00028 25.5 3.9 33 108-146 2-34 (114)
273 PF11287 DUF3088: Protein of u 64.0 15 0.00032 25.5 4.0 52 114-166 23-76 (112)
274 cd03022 DsbA_HCCA_Iso DsbA fam 63.4 8.9 0.00019 28.2 3.2 21 149-171 158-178 (192)
275 PF01323 DSBA: DSBA-like thior 62.8 8.3 0.00018 28.3 2.9 19 149-169 158-176 (193)
276 cd03025 DsbA_FrnE_like DsbA fa 60.6 10 0.00022 28.0 3.0 21 149-169 160-180 (193)
277 COG2761 FrnE Predicted dithiol 59.3 11 0.00024 29.4 3.0 16 149-164 175-190 (225)
278 PF04134 DUF393: Protein of un 58.2 17 0.00038 24.4 3.7 57 110-169 2-61 (114)
279 PF05988 DUF899: Bacterial pro 56.9 33 0.00071 26.5 5.2 50 90-142 58-113 (211)
280 PLN02817 glutathione dehydroge 54.0 51 0.0011 26.2 6.2 54 114-173 72-125 (265)
281 KOG0406 Glutathione S-transfer 52.9 84 0.0018 24.7 7.0 63 102-174 7-72 (231)
282 KOG0855 Alkyl hydroperoxide re 52.6 58 0.0013 24.5 5.7 20 101-120 88-108 (211)
283 cd03076 GST_N_Pi GST_N family, 52.3 52 0.0011 20.1 5.6 59 109-173 4-62 (73)
284 PF03960 ArsC: ArsC family; I 51.7 33 0.00071 23.1 4.2 32 110-147 1-32 (110)
285 PLN02378 glutathione S-transfe 51.2 61 0.0013 24.5 6.1 55 113-173 18-72 (213)
286 PF06764 DUF1223: Protein of u 51.2 85 0.0018 24.1 6.7 62 107-170 2-80 (202)
287 cd03024 DsbA_FrnE DsbA family, 50.7 21 0.00045 26.4 3.4 23 149-173 166-188 (201)
288 TIGR00862 O-ClC intracellular 50.4 74 0.0016 24.9 6.5 55 113-173 17-71 (236)
289 PF13409 GST_N_2: Glutathione 49.5 9.2 0.0002 23.5 1.0 56 114-174 1-60 (70)
290 COG1393 ArsC Arsenate reductas 49.2 22 0.00049 24.7 3.0 23 107-129 3-25 (117)
291 PRK10853 putative reductase; P 49.0 32 0.00069 23.9 3.8 34 107-146 2-35 (118)
292 PRK10387 glutaredoxin 2; Provi 48.9 66 0.0014 23.8 5.9 59 109-173 3-61 (210)
293 COG4604 CeuD ABC-type enteroch 47.4 69 0.0015 25.1 5.6 49 116-173 169-217 (252)
294 KOG2990 C2C2-type Zn-finger pr 45.8 48 0.001 26.9 4.7 36 88-125 27-65 (317)
295 cd03074 PDI_b'_Calsequestrin_C 45.3 1E+02 0.0022 21.4 7.3 65 101-165 18-88 (120)
296 KOG1422 Intracellular Cl- chan 45.2 86 0.0019 24.3 5.8 47 114-164 20-66 (221)
297 COG5494 Predicted thioredoxin/ 44.2 76 0.0016 24.8 5.4 59 107-172 13-71 (265)
298 COG0386 BtuE Glutathione perox 43.9 55 0.0012 24.1 4.4 44 101-145 23-67 (162)
299 PRK10026 arsenate reductase; P 43.7 49 0.0011 23.8 4.2 22 107-128 4-25 (141)
300 TIGR02182 GRXB Glutaredoxin, G 43.4 91 0.002 23.5 5.9 58 110-173 3-60 (209)
301 PF07700 HNOB: Heme NO binding 42.9 68 0.0015 23.5 5.0 43 102-144 126-169 (171)
302 PF06953 ArsD: Arsenical resis 42.6 1.1E+02 0.0023 21.6 5.7 51 121-173 22-85 (123)
303 TIGR01616 nitro_assoc nitrogen 42.5 56 0.0012 22.9 4.3 22 107-128 3-24 (126)
304 cd03044 GST_N_EF1Bgamma GST_N 41.8 81 0.0018 19.2 6.1 59 109-173 3-64 (75)
305 cd03039 GST_N_Sigma_like GST_N 39.9 38 0.00083 20.5 2.8 60 109-174 3-63 (72)
306 cd05855 Ig_TrkB_d5 Fifth domai 39.9 21 0.00045 22.9 1.6 13 160-172 13-25 (79)
307 cd03054 GST_N_Metaxin GST_N fa 39.1 87 0.0019 18.8 5.5 49 112-173 13-61 (72)
308 PF09822 ABC_transp_aux: ABC-t 37.4 2E+02 0.0044 22.5 10.4 60 101-160 22-90 (271)
309 cd03038 GST_N_etherase_LigE GS 37.1 18 0.00038 22.9 0.9 56 112-173 13-71 (84)
310 cd03047 GST_N_2 GST_N family, 37.1 82 0.0018 19.0 4.1 59 109-173 3-64 (73)
311 TIGR02743 TraW type-F conjugat 36.6 1E+02 0.0022 23.7 5.1 39 125-170 158-196 (202)
312 PRK15113 glutathione S-transfe 35.9 76 0.0016 23.8 4.5 62 106-173 5-71 (214)
313 cd03030 GRX_SH3BGR Glutaredoxi 35.7 1.3E+02 0.0028 19.8 6.0 15 134-148 29-43 (92)
314 PF07315 DUF1462: Protein of u 35.3 1.4E+02 0.003 20.0 6.0 57 114-172 8-79 (93)
315 PRK13730 conjugal transfer pil 35.0 36 0.00079 26.2 2.4 20 146-166 151-170 (212)
316 COG5429 Uncharacterized secret 34.0 59 0.0013 25.7 3.5 65 103-170 41-123 (261)
317 cd05863 Ig2_VEGFR-3 Second imm 33.9 38 0.00083 20.7 2.1 13 160-172 13-25 (67)
318 COG3634 AhpF Alkyl hydroperoxi 33.8 2.2E+02 0.0047 24.4 6.9 66 101-170 114-179 (520)
319 PF06491 Disulph_isomer: Disul 32.6 1.9E+02 0.0041 20.7 10.6 86 83-172 18-109 (136)
320 COG3531 Predicted protein-disu 32.1 60 0.0013 25.0 3.2 28 105-132 2-29 (212)
321 PRK11752 putative S-transferas 32.0 2.3E+02 0.0051 22.2 6.8 65 108-173 45-117 (264)
322 KOG1651 Glutathione peroxidase 31.6 1E+02 0.0022 23.0 4.2 45 101-145 32-77 (171)
323 cd03022 DsbA_HCCA_Iso DsbA fam 30.8 1.1E+02 0.0024 22.2 4.5 33 109-141 3-35 (192)
324 cd03042 GST_N_Zeta GST_N famil 30.3 1.2E+02 0.0027 17.9 7.0 58 110-173 4-64 (73)
325 cd05859 Ig4_PDGFR-alpha Fourth 29.5 44 0.00094 22.2 1.9 13 160-172 33-45 (101)
326 PHA02151 hypothetical protein 29.1 35 0.00076 25.3 1.4 16 101-116 201-216 (217)
327 cd03048 GST_N_Ure2p_like GST_N 27.8 1.2E+02 0.0027 18.6 3.8 59 109-173 3-67 (81)
328 cd04971 Ig_TrKABC_d5 Fifth dom 27.6 47 0.001 21.0 1.8 13 160-172 13-25 (81)
329 PF04908 SH3BGR: SH3-binding, 27.2 2E+02 0.0043 19.3 5.5 65 108-172 3-78 (99)
330 KOG0324 Uncharacterized conser 27.1 73 0.0016 24.7 2.9 53 109-162 79-132 (214)
331 cd06538 CIDE_N_FSP27 CIDE_N do 27.0 1E+02 0.0022 20.0 3.2 25 149-173 29-53 (79)
332 PRK13738 conjugal transfer pil 26.9 1.8E+02 0.0039 22.5 5.1 40 126-171 157-197 (209)
333 COG4312 Uncharacterized protei 26.5 3.2E+02 0.007 21.5 6.7 72 89-164 63-142 (247)
334 PF10589 NADH_4Fe-4S: NADH-ubi 26.3 35 0.00075 19.5 0.8 20 113-132 17-36 (46)
335 KOG0868 Glutathione S-transfer 25.5 31 0.00066 26.2 0.6 65 101-173 2-70 (217)
336 PRK00366 ispG 4-hydroxy-3-meth 25.4 96 0.0021 26.0 3.5 58 115-172 271-338 (360)
337 cd03043 GST_N_1 GST_N family, 25.4 1.3E+02 0.0028 18.3 3.5 56 112-173 7-64 (73)
338 PF14639 YqgF: Holliday-juncti 25.2 1.1E+02 0.0023 22.3 3.4 48 90-142 53-105 (150)
339 COG2761 FrnE Predicted dithiol 25.1 1.5E+02 0.0032 23.2 4.4 33 104-136 5-37 (225)
340 COG3011 Predicted thiol-disulf 24.2 2.8E+02 0.006 20.0 6.4 70 101-173 4-75 (137)
341 cd06537 CIDE_N_B CIDE_N domain 24.2 1.1E+02 0.0025 19.8 3.0 24 149-172 29-52 (81)
342 KOG4277 Uncharacterized conser 24.2 2.8E+02 0.006 23.1 5.8 64 101-166 248-322 (468)
343 PF00403 HMA: Heavy-metal-asso 24.1 1.6E+02 0.0034 17.1 4.0 31 111-145 5-35 (62)
344 COG2093 DNA-directed RNA polym 23.1 30 0.00065 21.4 0.2 16 140-157 39-54 (64)
345 KOG0852 Alkyl hydroperoxide re 22.6 1.7E+02 0.0036 22.3 4.0 42 101-142 31-76 (196)
346 COG4752 Uncharacterized protei 22.0 1.1E+02 0.0023 22.6 2.8 26 89-117 122-147 (190)
347 PLN02473 glutathione S-transfe 21.6 3.4E+02 0.0074 20.0 7.4 59 109-174 5-67 (214)
348 COG4837 Uncharacterized protei 21.5 2.7E+02 0.0058 18.8 6.8 64 107-172 7-86 (106)
349 PF14421 LmjF365940-deam: A di 21.1 1.3E+02 0.0029 22.7 3.3 29 114-146 156-184 (193)
350 PF02702 KdpD: Osmosensitive K 21.0 4E+02 0.0087 20.6 8.3 71 101-172 2-72 (211)
351 PF10865 DUF2703: Domain of un 20.9 2.3E+02 0.005 19.8 4.3 49 112-164 12-67 (120)
352 PRK14811 formamidopyrimidine-D 20.9 20 0.00043 28.6 -1.2 11 113-123 256-266 (269)
353 cd03080 GST_N_Metaxin_like GST 20.6 2.1E+02 0.0046 17.3 5.9 48 113-173 15-62 (75)
354 PF09654 DUF2396: Protein of u 20.0 37 0.0008 24.5 0.1 13 114-126 8-20 (161)
No 1
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=1.5e-24 Score=150.97 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
.++|++.+.. +.++++||+|||+||++|+.+.|.+++++.++.+.+.|++||+|++++ ++++|+|.++||+++|++|
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-FNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHHHcCCCCCCEEEEEECC
Confidence 5788888853 478999999999999999999999999999997778999999999996 9999999999999999999
Q ss_pred EEEec
Q 030610 169 FVLLT 173 (174)
Q Consensus 169 ~~v~~ 173 (174)
+++..
T Consensus 79 ~~v~~ 83 (114)
T cd02954 79 KHMKI 83 (114)
T ss_pred EEEEE
Confidence 98853
No 2
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=155.86 Aligned_cols=85 Identities=29% Similarity=0.540 Sum_probs=78.7
Q ss_pred cccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEE
Q 030610 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163 (174)
Q Consensus 84 ~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~ 163 (174)
..+.+..+|++.+. +++.+|+|+|||+||+||+.+.|.|+++..+|.+.+.+++||+|++++ ++.+|+|.++||++
T Consensus 45 ~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-la~~Y~I~avPtvl 120 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-LAEDYEISAVPTVL 120 (150)
T ss_pred ccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-hHhhcceeeeeEEE
Confidence 34556789988775 789999999999999999999999999999999999999999999997 99999999999999
Q ss_pred EeeCCEEEe
Q 030610 164 VNSNFFVLL 172 (174)
Q Consensus 164 ~~~~G~~v~ 172 (174)
+|+||+++-
T Consensus 121 vfknGe~~d 129 (150)
T KOG0910|consen 121 VFKNGEKVD 129 (150)
T ss_pred EEECCEEee
Confidence 999999874
No 3
>PHA02278 thioredoxin-like protein
Probab=99.90 E-value=3.2e-23 Score=142.63 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHHcCCCCCCEEE
Q 030610 87 GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMKMPTIQ 163 (174)
Q Consensus 87 ~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~v~~~Pt~~ 163 (174)
.+.++|++.+ ..+++++|+|||+||++|+.+.|.++++++++..++.|++||+|.++ .+++++|+|.++||++
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 3568899999 78999999999999999999999999999887567889999999862 2499999999999999
Q ss_pred EeeCCEEEe
Q 030610 164 VNSNFFVLL 172 (174)
Q Consensus 164 ~~~~G~~v~ 172 (174)
+|++|+++.
T Consensus 78 ~fk~G~~v~ 86 (103)
T PHA02278 78 GYKDGQLVK 86 (103)
T ss_pred EEECCEEEE
Confidence 999999875
No 4
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.90 E-value=5.2e-23 Score=141.56 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH--HHHHHcCCCCCCEEEEe
Q 030610 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMKMPTIQVN 165 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~l~~~~~v~~~Pt~~~~ 165 (174)
+.++|++.+.+ ..+++|||+|||+||++|+.+.|.|+++++++ +++.|++||+|++.. +++++|+|.++||+++|
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 57899999965 55999999999999999999999999999999 889999999998741 49999999999999999
Q ss_pred eCCEEEe
Q 030610 166 SNFFVLL 172 (174)
Q Consensus 166 ~~G~~v~ 172 (174)
++|+++.
T Consensus 79 ~~G~~v~ 85 (103)
T cd02985 79 KDGEKIH 85 (103)
T ss_pred eCCeEEE
Confidence 9999875
No 5
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-22 Score=139.98 Aligned_cols=81 Identities=30% Similarity=0.497 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEE
Q 030610 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFV 170 (174)
Q Consensus 91 ~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~ 170 (174)
+++.....+...+++++|+|||+|||||+.+.|.+++|+.+|.+ +.|++||+|+..+ +++.++|.++||++||++|+.
T Consensus 9 ~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~-~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 9 DLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEE-VAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred hHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHh-HHHhcCceEeeEEEEEECCEE
Confidence 44443333325679999999999999999999999999999955 9999999999664 999999999999999999998
Q ss_pred Eec
Q 030610 171 LLT 173 (174)
Q Consensus 171 v~~ 173 (174)
+..
T Consensus 87 ~~~ 89 (106)
T KOG0907|consen 87 VDE 89 (106)
T ss_pred EEE
Confidence 753
No 6
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.88 E-value=3.8e-22 Score=143.91 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=77.7
Q ss_pred ccccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCC
Q 030610 81 IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMP 160 (174)
Q Consensus 81 ~~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~P 160 (174)
+.+..+++.++|++.+.. ..+++|||+|||+||++|+.+.|.|+++++++++.+.|++||+|++++ +++.|+|.+.|
T Consensus 3 ~~l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-la~~y~I~~~~ 79 (142)
T PLN00410 3 YLLPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-FNTMYELYDPC 79 (142)
T ss_pred chHhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-HHHHcCccCCC
Confidence 345678889999999975 579999999999999999999999999999997779999999999996 99999999776
Q ss_pred EEE-EeeCCEE
Q 030610 161 TIQ-VNSNFFV 170 (174)
Q Consensus 161 t~~-~~~~G~~ 170 (174)
+++ ||++|++
T Consensus 80 t~~~ffk~g~~ 90 (142)
T PLN00410 80 TVMFFFRNKHI 90 (142)
T ss_pred cEEEEEECCeE
Confidence 655 8899984
No 7
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.88 E-value=5.1e-22 Score=137.55 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
.+++++.+.. .++++|||+|||+||++|+.+.|.|++++++|.+.+.|++||+|+.++ +++.|+|.+.||++||++|
T Consensus 2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-va~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-YTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-HHHhcCceeCcEEEEEECC
Confidence 4688888875 579999999999999999999999999999994449999999999997 9999999999999999999
Q ss_pred EEE
Q 030610 169 FVL 171 (174)
Q Consensus 169 ~~v 171 (174)
+-+
T Consensus 79 kh~ 81 (114)
T cd02986 79 QHM 81 (114)
T ss_pred cEE
Confidence 865
No 8
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=3e-22 Score=139.95 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHH-HHcCCCCCCEEEEeeC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV-ARAGVMKMPTIQVNSN 167 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~-~~~~v~~~Pt~~~~~~ 167 (174)
.++|+.++.-. +++++++|.|||+||++|+.+.|.++++++++++.+.|++||++++.+ ++ ++|+|.++||+++|++
T Consensus 16 ~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~-l~~~~~~I~~~PTl~lf~~ 93 (113)
T cd03006 16 KGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG-KCRKQKHFFYFPVIHLYYR 93 (113)
T ss_pred hhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH-HHHHhcCCcccCEEEEEEC
Confidence 47888763211 789999999999999999999999999999998889999999999986 88 5899999999999999
Q ss_pred CEEE
Q 030610 168 FFVL 171 (174)
Q Consensus 168 G~~v 171 (174)
|+..
T Consensus 94 g~~~ 97 (113)
T cd03006 94 SRGP 97 (113)
T ss_pred Cccc
Confidence 9853
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.88 E-value=4.7e-22 Score=135.96 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
.++|++.+ ..+++++|+|||+||++|+.+.|.++++++.+++.+.|++||++++++ ++++++|.++||+++|++|
T Consensus 8 ~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 8 RGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred HhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCCCccCEEEEEcCC
Confidence 58999998 667999999999999999999999999999998889999999999986 9999999999999999999
Q ss_pred EEE
Q 030610 169 FVL 171 (174)
Q Consensus 169 ~~v 171 (174)
+.+
T Consensus 83 ~~~ 85 (101)
T cd03003 83 MNP 85 (101)
T ss_pred CCc
Confidence 764
No 10
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.87 E-value=1.3e-21 Score=134.41 Aligned_cols=82 Identities=13% Similarity=0.253 Sum_probs=74.3
Q ss_pred ccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCCCCEEE
Q 030610 85 PIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163 (174)
Q Consensus 85 ~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~ 163 (174)
.+.+.++|++++ +.+++++|+|||+||++|+.+.|.++++++.+++ .+.|+.+|+| +++ ++++|+|.++||++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~-~~~~~~v~~~Pt~~ 76 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID-TLKRYRGKCEPTFL 76 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH-HHHHcCCCcCcEEE
Confidence 356789999998 7799999999999999999999999999999975 4899999999 664 89999999999999
Q ss_pred EeeCCEEEe
Q 030610 164 VNSNFFVLL 172 (174)
Q Consensus 164 ~~~~G~~v~ 172 (174)
+|++|+++.
T Consensus 77 ~~~~g~~~~ 85 (102)
T cd02948 77 FYKNGELVA 85 (102)
T ss_pred EEECCEEEE
Confidence 999999875
No 11
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.87 E-value=1.4e-21 Score=136.63 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=78.9
Q ss_pred cccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCE
Q 030610 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (174)
Q Consensus 82 ~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt 161 (174)
.+..+++.++|.+.+ .++++|+|+||++||++|+.+.|.|+++++++ +++.|++||++++++ ++++|+|.++||
T Consensus 5 ~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~~~-l~~~~~v~~vPt 78 (113)
T cd02989 5 KYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKAPF-LVEKLNIKVLPT 78 (113)
T ss_pred CeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccCHH-HHHHCCCccCCE
Confidence 356777889999999 66899999999999999999999999999998 679999999999996 999999999999
Q ss_pred EEEeeCCEEEec
Q 030610 162 IQVNSNFFVLLT 173 (174)
Q Consensus 162 ~~~~~~G~~v~~ 173 (174)
+++|++|+++.+
T Consensus 79 ~l~fk~G~~v~~ 90 (113)
T cd02989 79 VILFKNGKTVDR 90 (113)
T ss_pred EEEEECCEEEEE
Confidence 999999998753
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.86 E-value=2.2e-21 Score=133.19 Aligned_cols=80 Identities=23% Similarity=0.418 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeC
Q 030610 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSN 167 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~ 167 (174)
+.++|++.+. +.+++++|+|||+||++|+.+.|.|+++++++.+.+.|++||++++++ ++++++|.++||+++|++
T Consensus 7 ~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i~~~Pt~~~~~~ 82 (104)
T cd03004 7 TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQQANIRAYPTIRLYPG 82 (104)
T ss_pred CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHHHcCCCcccEEEEEcC
Confidence 3589999875 567899999999999999999999999999997889999999999986 999999999999999988
Q ss_pred C-EEE
Q 030610 168 F-FVL 171 (174)
Q Consensus 168 G-~~v 171 (174)
| +.+
T Consensus 83 g~~~~ 87 (104)
T cd03004 83 NASKY 87 (104)
T ss_pred CCCCc
Confidence 7 544
No 13
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.86 E-value=2.9e-21 Score=130.61 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEE
Q 030610 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFV 170 (174)
Q Consensus 91 ~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~ 170 (174)
+|++.+.+ +.+++++|+|||+||++|+.+.|.+++++..+.+.+.+++||++.+++ ++++|+|.++||+++|++|++
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ-IAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH-HHHHcCCCCCCEEEEEeCCEE
Confidence 57777754 558899999999999999999999999999997789999999999986 999999999999999999987
Q ss_pred Ee
Q 030610 171 LL 172 (174)
Q Consensus 171 v~ 172 (174)
+.
T Consensus 79 ~~ 80 (96)
T cd02956 79 VD 80 (96)
T ss_pred ee
Confidence 64
No 14
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.1e-21 Score=152.12 Aligned_cols=87 Identities=28% Similarity=0.554 Sum_probs=77.9
Q ss_pred ccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEE
Q 030610 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (174)
Q Consensus 83 ~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~ 162 (174)
+.+++ ..+|++.+..+ ...++|||+||||||++|+.+.|.|++++.+|++.+.+++||||+++. ++.+|||+++||+
T Consensus 25 I~dvT-~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-vAaqfgiqsIPtV 101 (304)
T COG3118 25 IKDVT-EANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-VAAQFGVQSIPTV 101 (304)
T ss_pred ceech-HhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-HHHHhCcCcCCeE
Confidence 33333 48998877653 667799999999999999999999999999999999999999999997 9999999999999
Q ss_pred EEeeCCEEEe
Q 030610 163 QVNSNFFVLL 172 (174)
Q Consensus 163 ~~~~~G~~v~ 172 (174)
+.|++|+.|-
T Consensus 102 ~af~dGqpVd 111 (304)
T COG3118 102 YAFKDGQPVD 111 (304)
T ss_pred EEeeCCcCcc
Confidence 9999999774
No 15
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.85 E-value=5e-21 Score=134.91 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHh--hH--hhhHHHHHHHHHh--CCCeEEEEEEccCChHHHHHHcCCCCCCEE
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRK--CI--YLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~--C~--~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~ 162 (174)
.++|++.+. +++.++|++||++||++ |+ ++.|.+++++.++ .+++.|++||+|++++ ++++|+|+++||+
T Consensus 16 ~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-La~~~~I~~iPTl 91 (120)
T cd03065 16 EKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-VAKKLGLDEEDSI 91 (120)
T ss_pred hhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-HHHHcCCccccEE
Confidence 589999885 67889999999999987 99 8999999999998 7889999999999996 9999999999999
Q ss_pred EEeeCCEEEe
Q 030610 163 QVNSNFFVLL 172 (174)
Q Consensus 163 ~~~~~G~~v~ 172 (174)
++|++|+++.
T Consensus 92 ~lfk~G~~v~ 101 (120)
T cd03065 92 YVFKDDEVIE 101 (120)
T ss_pred EEEECCEEEE
Confidence 9999999764
No 16
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.85 E-value=6e-21 Score=133.33 Aligned_cols=86 Identities=24% Similarity=0.400 Sum_probs=74.8
Q ss_pred ccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEE
Q 030610 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (174)
Q Consensus 83 ~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~ 162 (174)
+.++++ ++|.+.+.+. +.+++++|+||++||++|+.+.|.++++++++ +++.|++||++++ + ++++|+|.++||+
T Consensus 6 v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~~~-~-l~~~~~i~~~Pt~ 80 (113)
T cd02957 6 VREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAEKA-F-LVNYLDIKVLPTL 80 (113)
T ss_pred EEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEchhh-H-HHHhcCCCcCCEE
Confidence 445555 8999888531 12589999999999999999999999999999 6799999999988 5 9999999999999
Q ss_pred EEeeCCEEEec
Q 030610 163 QVNSNFFVLLT 173 (174)
Q Consensus 163 ~~~~~G~~v~~ 173 (174)
++|++|+++.+
T Consensus 81 ~~f~~G~~v~~ 91 (113)
T cd02957 81 LVYKNGELIDN 91 (113)
T ss_pred EEEECCEEEEE
Confidence 99999998854
No 17
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.85 E-value=2e-20 Score=127.33 Aligned_cols=81 Identities=32% Similarity=0.602 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeC
Q 030610 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSN 167 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~ 167 (174)
+.++|++.+. +++++++|+||++||++|+.+.|.|+++++.+.+++.|+.||++++++ ++++|+|.++||+++|++
T Consensus 5 t~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 5 TDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE-LCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp STTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH-HHHHTTCSSSSEEEEEET
T ss_pred CHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch-hhhccCCCCCCEEEEEEC
Confidence 3589999993 349999999999999999999999999999997799999999999986 999999999999999999
Q ss_pred CEEEe
Q 030610 168 FFVLL 172 (174)
Q Consensus 168 G~~v~ 172 (174)
|+.+.
T Consensus 81 g~~~~ 85 (103)
T PF00085_consen 81 GKEVK 85 (103)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 99875
No 18
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.85 E-value=9.1e-21 Score=131.24 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCC--CHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASW--CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~w--C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
..+|++.+ ..+..++|.|||+| |++|+.+.|.|++++++|.+.+.|+++|++++++ ++.+|+|+++||+++|+
T Consensus 17 ~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~-la~~f~V~sIPTli~fk 91 (111)
T cd02965 17 AATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA-LAARFGVLRTPALLFFR 91 (111)
T ss_pred cccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH-HHHHcCCCcCCEEEEEE
Confidence 57899888 78999999999997 9999999999999999997789999999999995 99999999999999999
Q ss_pred CCEEEec
Q 030610 167 NFFVLLT 173 (174)
Q Consensus 167 ~G~~v~~ 173 (174)
+|+++..
T Consensus 92 dGk~v~~ 98 (111)
T cd02965 92 DGRYVGV 98 (111)
T ss_pred CCEEEEE
Confidence 9998854
No 19
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.84 E-value=1.4e-20 Score=130.27 Aligned_cols=78 Identities=26% Similarity=0.468 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC------CCeEEEEEEccCChHHHHHHcCCCCCCEE
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH------PRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~------~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~ 162 (174)
.++|++.+ +.+++++|.|||+||++|+++.|.|+++++.++ +++.+++||++++++ ++++|+|.++||+
T Consensus 8 ~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~v~~~Ptl 82 (108)
T cd02996 8 SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD-IADRYRINKYPTL 82 (108)
T ss_pred HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH-HHHhCCCCcCCEE
Confidence 58999988 678999999999999999999999999998763 258999999999986 9999999999999
Q ss_pred EEeeCCEEE
Q 030610 163 QVNSNFFVL 171 (174)
Q Consensus 163 ~~~~~G~~v 171 (174)
++|++|++.
T Consensus 83 ~~~~~g~~~ 91 (108)
T cd02996 83 KLFRNGMMM 91 (108)
T ss_pred EEEeCCcCc
Confidence 999999843
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.84 E-value=1.4e-20 Score=128.93 Aligned_cols=75 Identities=23% Similarity=0.490 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEcc-CChHHHHHHcCCCCCCEEEEeeCC
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
..+.++++. ..+++++|+|||+||++|+.+.|.|+++++.+ +++.+++||.+ ++++ ++++|+|.++||+++|++|
T Consensus 7 ~~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~-~~~~~~~vd~~~~~~~-l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 7 NIALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMF-PQIRHLAIEESSIKPS-LLSRYGVVGFPTILLFNST 82 (100)
T ss_pred hHHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh-ccCceEEEECCCCCHH-HHHhcCCeecCEEEEEcCC
Confidence 355566654 78999999999999999999999999999999 56889999998 7775 9999999999999999998
No 21
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.84 E-value=2.6e-20 Score=136.39 Aligned_cols=82 Identities=16% Similarity=0.415 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCC------CCE
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMK------MPT 161 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~v~~------~Pt 161 (174)
.++|++.+.. +.+++++|+|||+||++|+.+.|.++++++++++ ++.|++||++++++ ++++|+|.+ +||
T Consensus 35 ~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-la~~~~V~~~~~v~~~PT 111 (152)
T cd02962 35 PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-VAEKFRVSTSPLSKQLPT 111 (152)
T ss_pred HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-HHHHcCceecCCcCCCCE
Confidence 5789988854 5578999999999999999999999999999964 69999999999996 999999988 999
Q ss_pred EEEeeCCEEEec
Q 030610 162 IQVNSNFFVLLT 173 (174)
Q Consensus 162 ~~~~~~G~~v~~ 173 (174)
+++|++|+++.+
T Consensus 112 ~ilf~~Gk~v~r 123 (152)
T cd02962 112 IILFQGGKEVAR 123 (152)
T ss_pred EEEEECCEEEEE
Confidence 999999998864
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.84 E-value=1.8e-20 Score=130.57 Aligned_cols=83 Identities=20% Similarity=0.385 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
+.++|++.+... ..+++++|+|||+||++|+.+.|.++++++++++ ++.+++||+++++. ++++++|.++||+++|+
T Consensus 10 ~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 10 TFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR-LARKLGAHSVPAIVGII 87 (111)
T ss_pred eHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH-HHHHcCCccCCEEEEEE
Confidence 357787544211 4789999999999999999999999999999965 69999999999986 99999999999999999
Q ss_pred CCEEEe
Q 030610 167 NFFVLL 172 (174)
Q Consensus 167 ~G~~v~ 172 (174)
+|+.+.
T Consensus 88 ~g~~~~ 93 (111)
T cd02963 88 NGQVTF 93 (111)
T ss_pred CCEEEE
Confidence 998764
No 23
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.84 E-value=3.7e-20 Score=125.23 Aligned_cols=83 Identities=18% Similarity=0.442 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeC
Q 030610 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSN 167 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~ 167 (174)
|.++|++++.. ..+++++|+||++||++|+.+.|.|+++++++.+++.++++|++++++ ++++|+|.++||+++|++
T Consensus 1 s~~~~~~~~~~--~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKS--DASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE-ISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhh--CCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH-HHHhcCCccccEEEEEEC
Confidence 35789999864 336999999999999999999999999999976799999999999986 999999999999999999
Q ss_pred CEEEec
Q 030610 168 FFVLLT 173 (174)
Q Consensus 168 G~~v~~ 173 (174)
|+++..
T Consensus 78 g~~~~~ 83 (97)
T cd02984 78 GTIVDR 83 (97)
T ss_pred CEEEEE
Confidence 998753
No 24
>PTZ00051 thioredoxin; Provisional
Probab=99.84 E-value=3.6e-20 Score=125.63 Aligned_cols=85 Identities=27% Similarity=0.548 Sum_probs=77.3
Q ss_pred ccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEE
Q 030610 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (174)
Q Consensus 83 ~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~ 162 (174)
+.++.+.++|++++ +.++.++|+||++||++|+.+.|.++++++.+ .++.|+.+|++++.+ ++++|+|.++||+
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELSE-VAEKENITSMPTF 75 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-CCcEEEEEECcchHH-HHHHCCCceeeEE
Confidence 44677788999998 77999999999999999999999999999988 679999999999886 9999999999999
Q ss_pred EEeeCCEEEec
Q 030610 163 QVNSNFFVLLT 173 (174)
Q Consensus 163 ~~~~~G~~v~~ 173 (174)
++|++|+++..
T Consensus 76 ~~~~~g~~~~~ 86 (98)
T PTZ00051 76 KVFKNGSVVDT 86 (98)
T ss_pred EEEeCCeEEEE
Confidence 99999998753
No 25
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.83 E-value=5.5e-20 Score=137.84 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=77.9
Q ss_pred cccccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCC
Q 030610 80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKM 159 (174)
Q Consensus 80 ~~~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~ 159 (174)
...+.++++.++|.+.+..+ ..+.+|||+||++||++|+.+.|.|++++.+| +.+.|++||++++ + ++.+|+|.++
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~~-~-l~~~f~v~~v 136 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASAT-G-ASDEFDTDAL 136 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccch-h-hHHhCCCCCC
Confidence 34466777778999888532 23459999999999999999999999999999 6899999999987 5 9999999999
Q ss_pred CEEEEeeCCEEEec
Q 030610 160 PTIQVNSNFFVLLT 173 (174)
Q Consensus 160 Pt~~~~~~G~~v~~ 173 (174)
||+++|++|+++.+
T Consensus 137 PTlllyk~G~~v~~ 150 (175)
T cd02987 137 PALLVYKGGELIGN 150 (175)
T ss_pred CEEEEEECCEEEEE
Confidence 99999999998853
No 26
>PRK10996 thioredoxin 2; Provisional
Probab=99.82 E-value=1.3e-19 Score=131.10 Aligned_cols=81 Identities=31% Similarity=0.505 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeC
Q 030610 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSN 167 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~ 167 (174)
+.++|++++ +++++++|+|||+||++|+.+.|.|+++++++.+++.++++|++++++ ++++|+|.++||+++|++
T Consensus 41 ~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 41 TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE-LSARFRIRSIPTIMIFKN 115 (139)
T ss_pred CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH-HHHhcCCCccCEEEEEEC
Confidence 468999988 779999999999999999999999999999998889999999999986 999999999999999999
Q ss_pred CEEEec
Q 030610 168 FFVLLT 173 (174)
Q Consensus 168 G~~v~~ 173 (174)
|+++..
T Consensus 116 G~~v~~ 121 (139)
T PRK10996 116 GQVVDM 121 (139)
T ss_pred CEEEEE
Confidence 998753
No 27
>PRK09381 trxA thioredoxin; Provisional
Probab=99.82 E-value=1.4e-19 Score=125.23 Aligned_cols=86 Identities=22% Similarity=0.516 Sum_probs=75.7
Q ss_pred ccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEE
Q 030610 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (174)
Q Consensus 83 ~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~ 162 (174)
+.++. .++|++.+. +.+++++|+||++||++|+.+.|.|+++++.+.+++.++.+|++.++. ++++|+|.++||+
T Consensus 5 v~~~~-~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 79 (109)
T PRK09381 5 IIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTL 79 (109)
T ss_pred ceeeC-hhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-HHHhCCCCcCCEE
Confidence 33443 478887653 678999999999999999999999999999998889999999999986 9999999999999
Q ss_pred EEeeCCEEEec
Q 030610 163 QVNSNFFVLLT 173 (174)
Q Consensus 163 ~~~~~G~~v~~ 173 (174)
++|++|+++..
T Consensus 80 ~~~~~G~~~~~ 90 (109)
T PRK09381 80 LLFKNGEVAAT 90 (109)
T ss_pred EEEeCCeEEEE
Confidence 99999998753
No 28
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.82 E-value=1.3e-19 Score=123.51 Aligned_cols=78 Identities=24% Similarity=0.419 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC---CeEEEEEEccCChHHHHHHcCCCCCCEEEEe
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMKMPTIQVN 165 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~ 165 (174)
.++|+..+ ..+ .++|+|||+||++|+.+.|.++++++++++ .+.++++|+++++. ++++|+|.++||+++|
T Consensus 7 ~~~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 7 EDNFDHHI----AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE-LCSEFQVRGYPTLLLF 80 (102)
T ss_pred HHHHHHHh----hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh-hHhhcCCCcCCEEEEE
Confidence 57899998 444 499999999999999999999999999965 79999999999986 9999999999999999
Q ss_pred eCCEEEe
Q 030610 166 SNFFVLL 172 (174)
Q Consensus 166 ~~G~~v~ 172 (174)
++|+++.
T Consensus 81 ~~g~~~~ 87 (102)
T cd03005 81 KDGEKVD 87 (102)
T ss_pred eCCCeee
Confidence 9998654
No 29
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.81 E-value=1.8e-19 Score=124.43 Aligned_cols=77 Identities=26% Similarity=0.485 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC--ChHHHHHHcCCCCCCEEEEee
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA--VPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
.++|++.+. +.+++++|+|||+||++|+.+.|.++++++.+.+.+.++.+|++. +++ ++++|+|.++||+++|+
T Consensus 7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~-~~~~~~i~~~Pt~~~~~ 82 (109)
T cd03002 7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKP-LCGKYGVQGFPTLKVFR 82 (109)
T ss_pred hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHH-HHHHcCCCcCCEEEEEe
Confidence 478998885 568889999999999999999999999999998789999999998 765 99999999999999998
Q ss_pred CCE
Q 030610 167 NFF 169 (174)
Q Consensus 167 ~G~ 169 (174)
+|+
T Consensus 83 ~~~ 85 (109)
T cd03002 83 PPK 85 (109)
T ss_pred CCC
Confidence 886
No 30
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.81 E-value=2.2e-19 Score=122.52 Aligned_cols=75 Identities=29% Similarity=0.445 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCCCCEEEEeeC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSN 167 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~ 167 (174)
.++|++++ +. + ++|+|||+||++|+.+.|.|+++++.+++ ++.++++|++++++ ++++|+|.++||+++|++
T Consensus 8 ~~~f~~~~----~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02994 8 DSNWTLVL----EG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG-LSGRFFVTALPTIYHAKD 80 (101)
T ss_pred hhhHHHHh----CC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh-HHHHcCCcccCEEEEeCC
Confidence 57999877 32 3 78999999999999999999999998854 69999999999986 999999999999999999
Q ss_pred CEE
Q 030610 168 FFV 170 (174)
Q Consensus 168 G~~ 170 (174)
|++
T Consensus 81 g~~ 83 (101)
T cd02994 81 GVF 83 (101)
T ss_pred CCE
Confidence 974
No 31
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.80 E-value=5.5e-19 Score=120.65 Aligned_cols=79 Identities=22% Similarity=0.420 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC--CCeEEEEEEccC--ChHHHHHHcCCCCCCEEEE
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNA--VPHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~--~~~~l~~~~~v~~~Pt~~~ 164 (174)
..+|++++ +.+++++|+|||+||++|+.+.|.++++++.+. +.+.++.+|++. ++. ++++++|.++||+++
T Consensus 7 ~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 7 DEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA-LKEEYNVKGFPTFKY 81 (104)
T ss_pred hHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH-HHHhCCCccccEEEE
Confidence 46899988 567799999999999999999999999999886 568999999998 775 999999999999999
Q ss_pred eeCCEEEe
Q 030610 165 NSNFFVLL 172 (174)
Q Consensus 165 ~~~G~~v~ 172 (174)
|++|+.+.
T Consensus 82 ~~~g~~~~ 89 (104)
T cd02997 82 FENGKFVE 89 (104)
T ss_pred EeCCCeeE
Confidence 99998664
No 32
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-19 Score=139.14 Aligned_cols=87 Identities=30% Similarity=0.491 Sum_probs=80.2
Q ss_pred ccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEE
Q 030610 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (174)
Q Consensus 83 ~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~ 162 (174)
+..+.+..+|...+.. ...+.|+|+|+|.||+||+++.|.++.++.+| ++.+|++||+|+... .+..+||.+.||+
T Consensus 3 Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~~-taa~~gV~amPTF 78 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECRG-TAATNGVNAMPTF 78 (288)
T ss_pred eEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhhc-hhhhcCcccCceE
Confidence 5667788999988865 67899999999999999999999999999999 999999999999996 9999999999999
Q ss_pred EEeeCCEEEec
Q 030610 163 QVNSNFFVLLT 173 (174)
Q Consensus 163 ~~~~~G~~v~~ 173 (174)
++|+||+.+.+
T Consensus 79 iff~ng~kid~ 89 (288)
T KOG0908|consen 79 IFFRNGVKIDQ 89 (288)
T ss_pred EEEecCeEeee
Confidence 99999998753
No 33
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.79 E-value=6.3e-19 Score=127.96 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh-HHHHHHcCCCCCCEEEEe-e
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMKMPTIQVN-S 166 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~l~~~~~v~~~Pt~~~~-~ 166 (174)
..+|++++ ..++++||+|||+||++|+.+.|.++++++.+.+++.|+.||+|... ..++++|+|.++||+++| +
T Consensus 10 ~~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~ 85 (142)
T cd02950 10 STPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR 85 (142)
T ss_pred cCCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC
Confidence 45777777 78999999999999999999999999999999778889999888653 138999999999999999 5
Q ss_pred CCEEEec
Q 030610 167 NFFVLLT 173 (174)
Q Consensus 167 ~G~~v~~ 173 (174)
+|+++..
T Consensus 86 ~G~~v~~ 92 (142)
T cd02950 86 EGNEEGQ 92 (142)
T ss_pred CCCEEEE
Confidence 8988753
No 34
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=135.32 Aligned_cols=83 Identities=17% Similarity=0.379 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHh-cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeC
Q 030610 89 ESQFDRVIAEAQ-QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSN 167 (174)
Q Consensus 89 ~~~f~~~~~~~~-~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~ 167 (174)
.++|++++.... ..+++++|+|||+||++|+.+.|.|+++++++++.+.++++|++++++ ++++|+|.++||+++|++
T Consensus 37 ~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~-l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 37 DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN-LAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH-HHHHcCCCcCCEEEEEEC
Confidence 689999885310 136899999999999999999999999999998889999999999986 999999999999999999
Q ss_pred CEEEe
Q 030610 168 FFVLL 172 (174)
Q Consensus 168 G~~v~ 172 (174)
|+++.
T Consensus 116 G~~v~ 120 (224)
T PTZ00443 116 GKMYQ 120 (224)
T ss_pred CEEEE
Confidence 98764
No 35
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.79 E-value=1.3e-18 Score=118.61 Aligned_cols=77 Identities=27% Similarity=0.465 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
.++|++.+. +.+++++|.||++||++|+.+.|.|.++++++.+.+.++.+|++++++ ++++|+|.++|++++|++|
T Consensus 7 ~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 7 DSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS-LAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred HHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH-HHHHCCCCccCEEEEECCC
Confidence 578988884 456779999999999999999999999999998889999999999986 9999999999999999988
Q ss_pred E
Q 030610 169 F 169 (174)
Q Consensus 169 ~ 169 (174)
+
T Consensus 83 ~ 83 (103)
T cd03001 83 K 83 (103)
T ss_pred C
Confidence 3
No 36
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.79 E-value=2.4e-18 Score=116.87 Aligned_cols=78 Identities=21% Similarity=0.471 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEE
Q 030610 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFV 170 (174)
Q Consensus 91 ~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~ 170 (174)
.++..+. +.+++++|+||++||+.|+.+.|.++++++++++++.++++|++++++ ++++++|.++|++++|++|++
T Consensus 4 ~~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~-l~~~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 4 ALRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE-IAEAAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred hHHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCeeccEEEEEECCeE
Confidence 3555554 689999999999999999999999999999997789999999999986 999999999999999999998
Q ss_pred Ee
Q 030610 171 LL 172 (174)
Q Consensus 171 v~ 172 (174)
+.
T Consensus 80 v~ 81 (97)
T cd02949 80 VK 81 (97)
T ss_pred EE
Confidence 74
No 37
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.78 E-value=2.7e-18 Score=116.17 Aligned_cols=80 Identities=30% Similarity=0.632 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
.++|.+.+. +.+++++|+||++||++|+.+.|.++++++.+++++.|+++|++++++ ++++|+|.++|++++|++|
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-IAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCcCCEEEEEeCC
Confidence 578888874 457899999999999999999999999999997789999999999986 9999999999999999999
Q ss_pred EEEe
Q 030610 169 FVLL 172 (174)
Q Consensus 169 ~~v~ 172 (174)
+++.
T Consensus 79 ~~~~ 82 (101)
T TIGR01068 79 KEVD 82 (101)
T ss_pred cEee
Confidence 8764
No 38
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.78 E-value=1.8e-18 Score=121.61 Aligned_cols=84 Identities=15% Similarity=0.312 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHhcCCCeEEEEEec-------CCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC-------hHHHH
Q 030610 86 IGSESQFDRVIAEAQQLDESVIIVWMA-------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-------PHKLV 151 (174)
Q Consensus 86 i~s~~~f~~~~~~~~~~~k~vlV~F~a-------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-------~~~l~ 151 (174)
+.+.++|.+.+.. ..+++++|+||| +||++|+.+.|.+++++.++.+++.|++||+++. .+ +.
T Consensus 6 ~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~-~~ 82 (119)
T cd02952 6 VRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNP-FR 82 (119)
T ss_pred ccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchh-hH
Confidence 4567899999854 457899999999 9999999999999999999976899999999863 34 89
Q ss_pred HHcCCC-CCCEEEEeeCCEEEe
Q 030610 152 ARAGVM-KMPTIQVNSNFFVLL 172 (174)
Q Consensus 152 ~~~~v~-~~Pt~~~~~~G~~v~ 172 (174)
+.++|. ++||+++|++|+.+.
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred hccCcccCCCEEEEEcCCceec
Confidence 999999 999999999888765
No 39
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.78 E-value=8.3e-19 Score=120.44 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCCh---HHHHHHcCCCCCCEEE
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMKMPTIQ 163 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~v~~~Pt~~ 163 (174)
++|++++ .++++++|+|||+||++|+.+.|.+ +++++.+++++.++.||++++. .+++++|+|.++||++
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 5677777 7799999999999999999999988 6888888668999999998742 2489999999999999
Q ss_pred Eee--CCEEEe
Q 030610 164 VNS--NFFVLL 172 (174)
Q Consensus 164 ~~~--~G~~v~ 172 (174)
+|+ +|+++.
T Consensus 78 ~~~~~~g~~~~ 88 (104)
T cd02953 78 FYGPGGEPEPL 88 (104)
T ss_pred EECCCCCCCCc
Confidence 997 787653
No 40
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.78 E-value=2e-18 Score=119.77 Aligned_cols=79 Identities=15% Similarity=0.334 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccC-ChHHHHH-HcCCCCCCEEEEe
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA-VPHKLVA-RAGVMKMPTIQVN 165 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-~~~~l~~-~~~v~~~Pt~~~~ 165 (174)
.++|+.++... +++++++|.||++||++|+.+.|.|+++++.+++ ++.++.||++. +.. +++ .++|.++||+++|
T Consensus 8 ~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~-~~~~~~~v~~~Pti~~f 85 (109)
T cd02993 8 RAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE-FAKEELQLKSFPTILFF 85 (109)
T ss_pred HHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh-hHHhhcCCCcCCEEEEE
Confidence 47898887532 5789999999999999999999999999999976 59999999998 454 786 5999999999999
Q ss_pred eCCE
Q 030610 166 SNFF 169 (174)
Q Consensus 166 ~~G~ 169 (174)
++|.
T Consensus 86 ~~~~ 89 (109)
T cd02993 86 PKNS 89 (109)
T ss_pred cCCC
Confidence 7763
No 41
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.77 E-value=2.8e-18 Score=117.93 Aligned_cols=76 Identities=22% Similarity=0.465 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHHcCCCCCCEEEEe
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMKMPTIQVN 165 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~ 165 (174)
.++|+++. .+++++|.|||+||++|+++.|.|++++++++ .++.++++|++.+++ ++++|+|.++||+++|
T Consensus 6 ~~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~I~~~Pt~~l~ 79 (104)
T cd03000 6 DDSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS-IASEFGVRGYPTIKLL 79 (104)
T ss_pred hhhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh-HHhhcCCccccEEEEE
Confidence 36777643 47799999999999999999999999999984 359999999999986 9999999999999999
Q ss_pred eCCEE
Q 030610 166 SNFFV 170 (174)
Q Consensus 166 ~~G~~ 170 (174)
++|..
T Consensus 80 ~~~~~ 84 (104)
T cd03000 80 KGDLA 84 (104)
T ss_pred cCCCc
Confidence 88743
No 42
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.76 E-value=4.6e-18 Score=115.47 Aligned_cols=77 Identities=31% Similarity=0.541 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC--CeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
.++|++.+ ..+++++|+||++||++|+.+.|.|++++..+++ ++.++.+|++++++ ++++|+|.++|++++|+
T Consensus 3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD-LASRFGVSGFPTIKFFP 77 (102)
T ss_pred hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH-HHHhCCCCcCCEEEEec
Confidence 57899998 6799999999999999999999999999999965 69999999999986 99999999999999998
Q ss_pred CCEE
Q 030610 167 NFFV 170 (174)
Q Consensus 167 ~G~~ 170 (174)
+|+.
T Consensus 78 ~~~~ 81 (102)
T TIGR01126 78 KGKK 81 (102)
T ss_pred CCCc
Confidence 8874
No 43
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.76 E-value=6.4e-18 Score=118.31 Aligned_cols=79 Identities=25% Similarity=0.415 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC---CeEEEEEEccC--ChHHHHHHcCCCCCCEEE
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNA--VPHKLVARAGVMKMPTIQ 163 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~--~~~~l~~~~~v~~~Pt~~ 163 (174)
.++|++.+. +.+++++|+|||+||++|+.+.|.|+++++.+++ .+.|+.+|++. +. +++++|+|+++||++
T Consensus 8 ~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~-~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 8 AASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENV-ALCRDFGVTGYPTLR 83 (114)
T ss_pred HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhH-HHHHhCCCCCCCEEE
Confidence 589999885 4568999999999999999999999999998743 58999999864 44 499999999999999
Q ss_pred EeeCCEEE
Q 030610 164 VNSNFFVL 171 (174)
Q Consensus 164 ~~~~G~~v 171 (174)
+|++|+..
T Consensus 84 lf~~~~~~ 91 (114)
T cd02992 84 YFPPFSKE 91 (114)
T ss_pred EECCCCcc
Confidence 99988743
No 44
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.75 E-value=8.6e-18 Score=114.61 Aligned_cols=76 Identities=26% Similarity=0.406 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC--CeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
.++|++.+. +.+++++|+||++||++|+.+.|.++++++.+++ ++.++++|++++ + ++..+++.++||+++|+
T Consensus 7 ~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~-~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 7 GKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-D-VPSEFVVDGFPTILFFP 81 (104)
T ss_pred hhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-h-hhhhccCCCCCEEEEEc
Confidence 578988885 5579999999999999999999999999999865 599999999987 3 78999999999999998
Q ss_pred CCE
Q 030610 167 NFF 169 (174)
Q Consensus 167 ~G~ 169 (174)
+|+
T Consensus 82 ~~~ 84 (104)
T cd02995 82 AGD 84 (104)
T ss_pred CCC
Confidence 886
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.74 E-value=2e-17 Score=111.30 Aligned_cols=75 Identities=31% Similarity=0.563 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHh--CCCeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
.++|.+.+ .++++++|.||++||++|+.+.|.++++++.+ ++++.|+.+|+++++. ++++|+|.++||+++|+
T Consensus 5 ~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 5 DDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND-LCSEYGVRGYPTIKLFP 79 (101)
T ss_pred HHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH-HHHhCCCCCCCEEEEEc
Confidence 57899999 66779999999999999999999999999999 5789999999999885 99999999999999998
Q ss_pred CC
Q 030610 167 NF 168 (174)
Q Consensus 167 ~G 168 (174)
+|
T Consensus 80 ~~ 81 (101)
T cd02961 80 NG 81 (101)
T ss_pred CC
Confidence 77
No 46
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.74 E-value=1.5e-17 Score=113.54 Aligned_cols=77 Identities=30% Similarity=0.549 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC--CCeEEEEEEccC-ChHHHHHHcCCCCCCEEEEe
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNA-VPHKLVARAGVMKMPTIQVN 165 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~-~~~~l~~~~~v~~~Pt~~~~ 165 (174)
.++|++.+. +.+++++|.||++||++|+.+.|.++++++.++ +++.++++|++. +++ ++++|+|.++|++++|
T Consensus 7 ~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 7 DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD-LAKKYGVSGFPTLKFF 82 (105)
T ss_pred hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh-hHHhCCCCCcCEEEEE
Confidence 478888773 456799999999999999999999999999986 469999999999 885 9999999999999999
Q ss_pred eCCE
Q 030610 166 SNFF 169 (174)
Q Consensus 166 ~~G~ 169 (174)
++|+
T Consensus 83 ~~~~ 86 (105)
T cd02998 83 PKGS 86 (105)
T ss_pred eCCC
Confidence 8773
No 47
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.74 E-value=1.6e-17 Score=116.10 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=63.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEE
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFV 170 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~ 170 (174)
..+..++|.|||+||++|+.+.|.+++++..+ +.+.++++|++++++ ++++|+|.++||+++|++|+.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~-l~~~~~v~~vPt~~i~~~g~~ 87 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE-KAEKYGVERVPTTIFLQDGGK 87 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH-HHHHcCCCcCCEEEEEeCCee
Confidence 67888999999999999999999999999888 789999999999986 999999999999999988654
No 48
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.73 E-value=2.5e-17 Score=125.15 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=71.7
Q ss_pred cccccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCC
Q 030610 80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKM 159 (174)
Q Consensus 80 ~~~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~ 159 (174)
...+.+++ .++|...+..+ ..+.+|||+||++||++|+.+.|.|++++.+| +.++|++||++.. ..+|++.++
T Consensus 81 ~G~v~eis-~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-~~vkFvkI~ad~~----~~~~~i~~l 153 (192)
T cd02988 81 FGEVYEIS-KPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-PDTKFVKIISTQC----IPNYPDKNL 153 (192)
T ss_pred CCeEEEeC-HHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-CCCEEEEEEhHHh----HhhCCCCCC
Confidence 34455554 57887666432 33569999999999999999999999999999 6899999999753 579999999
Q ss_pred CEEEEeeCCEEEec
Q 030610 160 PTIQVNSNFFVLLT 173 (174)
Q Consensus 160 Pt~~~~~~G~~v~~ 173 (174)
||+++|++|+++.+
T Consensus 154 PTlliyk~G~~v~~ 167 (192)
T cd02988 154 PTILVYRNGDIVKQ 167 (192)
T ss_pred CEEEEEECCEEEEE
Confidence 99999999998753
No 49
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.73 E-value=4.1e-17 Score=115.56 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh--------H--HHHHHcC--
Q 030610 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP--------H--KLVARAG-- 155 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--------~--~l~~~~~-- 155 (174)
+.++|.+.+ .+++.++|+||++|||+|+.+.|.|++++++ .++.+++||+|.+. + ++.++|+
T Consensus 12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 357899999 7799999999999999999999999999988 45778889988543 1 3556665
Q ss_pred --CCCCCEEEEeeCCEEEec
Q 030610 156 --VMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 156 --v~~~Pt~~~~~~G~~v~~ 173 (174)
|.++||+++|++|+++..
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~ 105 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSV 105 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEE
Confidence 556999999999998753
No 50
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.72 E-value=2.4e-17 Score=115.92 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCC--CCEEEEe-eC
Q 030610 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMK--MPTIQVN-SN 167 (174)
Q Consensus 91 ~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~--~Pt~~~~-~~ 167 (174)
++++.++.+..++++|+|+|||+||++|+.+.|.+.+..........|+.||++.+.+.+.+.|++.+ +||++|| .+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 45666665558899999999999999999999999997776544445666676665433568899987 9999999 49
Q ss_pred CEEEe
Q 030610 168 FFVLL 172 (174)
Q Consensus 168 G~~v~ 172 (174)
|+++.
T Consensus 87 Gk~~~ 91 (117)
T cd02959 87 GDVHP 91 (117)
T ss_pred CCCch
Confidence 98865
No 51
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.1e-17 Score=140.99 Aligned_cols=77 Identities=26% Similarity=0.466 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC---CeEEEEEEccCChHHHHHHcCCCCCCEEEEe
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMKMPTIQVN 165 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~ 165 (174)
.++|+..+ ..+..++|.||||||++|++++|.+++.+..+.. .+.+++||++++.+ +|.+|+|+++||+.+|
T Consensus 32 ~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~-~~~~y~v~gyPTlkiF 106 (493)
T KOG0190|consen 32 KDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESD-LASKYEVRGYPTLKIF 106 (493)
T ss_pred cccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhh-hHhhhcCCCCCeEEEE
Confidence 48999999 8899999999999999999999999999998853 79999999999975 9999999999999999
Q ss_pred eCCEE
Q 030610 166 SNFFV 170 (174)
Q Consensus 166 ~~G~~ 170 (174)
+||..
T Consensus 107 rnG~~ 111 (493)
T KOG0190|consen 107 RNGRS 111 (493)
T ss_pred ecCCc
Confidence 99985
No 52
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.71 E-value=7.6e-17 Score=114.20 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCC-CeEEEEEecCCCHhhHhhhHHHH---HHHHHhCCCeEEEEEEccCC------------hHHHHH
Q 030610 89 ESQFDRVIAEAQQLD-ESVIIVWMASWCRKCIYLKPKLE---KLAADYHPRLRFYNVDVNAV------------PHKLVA 152 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~-k~vlV~F~a~wC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~------------~~~l~~ 152 (174)
.++++++. +++ ++++|+|||+||++|+.+.|.+. ++.+.+++++.+++||++.. ..+++.
T Consensus 3 ~~~~~~a~----~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~ 78 (125)
T cd02951 3 YEDLAEAA----ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELAR 78 (125)
T ss_pred HHHHHHHH----HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHH
Confidence 35666666 778 99999999999999999999885 67777767899999999875 124899
Q ss_pred HcCCCCCCEEEEeeC--CEEEe
Q 030610 153 RAGVMKMPTIQVNSN--FFVLL 172 (174)
Q Consensus 153 ~~~v~~~Pt~~~~~~--G~~v~ 172 (174)
+|+|.++||++||.+ |+++.
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~ 100 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIA 100 (125)
T ss_pred HcCCccccEEEEEcCCCCceeE
Confidence 999999999999965 57664
No 53
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.70 E-value=8.9e-17 Score=135.82 Aligned_cols=81 Identities=15% Similarity=0.283 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHH-HHcCCCCCCEEEEe
Q 030610 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLV-ARAGVMKMPTIQVN 165 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~-~~~~v~~~Pt~~~~ 165 (174)
+.++|+.++... +.++++||+|||+||++|+.+.|.|+++++++.+ ++.|++||+|.+...++ ++|+|.++||+++|
T Consensus 357 ~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~F 435 (463)
T TIGR00424 357 SRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFF 435 (463)
T ss_pred CHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEE
Confidence 457899988421 6899999999999999999999999999999965 49999999997642254 78999999999999
Q ss_pred eCCE
Q 030610 166 SNFF 169 (174)
Q Consensus 166 ~~G~ 169 (174)
++|+
T Consensus 436 k~g~ 439 (463)
T TIGR00424 436 PKHS 439 (463)
T ss_pred ECCC
Confidence 9885
No 54
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.69 E-value=2.7e-16 Score=103.75 Aligned_cols=76 Identities=32% Similarity=0.604 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEE
Q 030610 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFV 170 (174)
Q Consensus 91 ~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~ 170 (174)
+|++.+ ..+++++|.||++||++|+.+.+.++++++. .+++.++.+|++.+++ +++.|++.++|++++|++|++
T Consensus 2 ~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 2 EFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE-LAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred chHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh-HHHhcCcccccEEEEEECCEE
Confidence 567777 5569999999999999999999999999988 5889999999999885 999999999999999999986
Q ss_pred Ee
Q 030610 171 LL 172 (174)
Q Consensus 171 v~ 172 (174)
+.
T Consensus 76 ~~ 77 (93)
T cd02947 76 VD 77 (93)
T ss_pred EE
Confidence 54
No 55
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.2e-17 Score=136.11 Aligned_cols=75 Identities=27% Similarity=0.461 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC--CeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
.++|++++. +++|.|||.||||||+||+++.|.+++|++.|++ ++.++++|++.|. ....++.++|||++|+
T Consensus 373 gknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd---~~~~~~~~fPTI~~~p 446 (493)
T KOG0190|consen 373 GKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND---VPSLKVDGFPTILFFP 446 (493)
T ss_pred ecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc---CccccccccceEEEec
Confidence 589999885 8999999999999999999999999999999965 7999999999984 3556788899999998
Q ss_pred CCE
Q 030610 167 NFF 169 (174)
Q Consensus 167 ~G~ 169 (174)
.|.
T Consensus 447 ag~ 449 (493)
T KOG0190|consen 447 AGH 449 (493)
T ss_pred CCC
Confidence 876
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.68 E-value=3e-16 Score=132.51 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEcc-CChHHHHH-HcCCCCCCEEEE
Q 030610 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN-AVPHKLVA-RAGVMKMPTIQV 164 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-~~~~~l~~-~~~v~~~Pt~~~ 164 (174)
+.++|++++... +.++++||+|||+||++|+.+.|.|+++++++.+ ++.|+++|++ .+.+ +++ +|+|.++||+++
T Consensus 351 t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~-la~~~~~I~~~PTil~ 428 (457)
T PLN02309 351 SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE-FAKQELQLGSFPTILL 428 (457)
T ss_pred CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH-HHHhhCCCceeeEEEE
Confidence 458999887532 6899999999999999999999999999999965 5999999999 6664 886 699999999999
Q ss_pred eeCCE
Q 030610 165 NSNFF 169 (174)
Q Consensus 165 ~~~G~ 169 (174)
|++|.
T Consensus 429 f~~g~ 433 (457)
T PLN02309 429 FPKNS 433 (457)
T ss_pred EeCCC
Confidence 98775
No 57
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.66 E-value=3.5e-16 Score=109.29 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEec--CCCH---hhHhhhHHHHHHHHHhCCCeEEEEEEcc-----CChHHHHHHcCCC-
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMA--SWCR---KCIYLKPKLEKLAADYHPRLRFYNVDVN-----AVPHKLVARAGVM- 157 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a--~wC~---~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----~~~~~l~~~~~v~- 157 (174)
..+|++.+ .+++.+||.||| |||+ +|+.+.|.+.+.+ +.+.+++|||+ ++. +||++|+|.
T Consensus 8 ~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa----~~v~lakVd~~d~~~~~~~-~L~~~y~I~~ 78 (116)
T cd03007 8 TVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT----DDLLVAEVGIKDYGEKLNM-ELGERYKLDK 78 (116)
T ss_pred hhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc----CceEEEEEecccccchhhH-HHHHHhCCCc
Confidence 58999999 789999999999 8888 6666666665543 34999999995 455 499999999
Q ss_pred -CCCEEEEeeCCE
Q 030610 158 -KMPTIQVNSNFF 169 (174)
Q Consensus 158 -~~Pt~~~~~~G~ 169 (174)
++||+++|++|+
T Consensus 79 ~gyPTl~lF~~g~ 91 (116)
T cd03007 79 ESYPVIYLFHGGD 91 (116)
T ss_pred CCCCEEEEEeCCC
Confidence 999999999985
No 58
>PTZ00062 glutaredoxin; Provisional
Probab=99.65 E-value=8.1e-16 Score=117.55 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 87 GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 87 ~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
.+.++|.+++. ...+.++++|||+||++|+.+.|.+++++++| +++.|++||.+ |+|.++||++||+
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d---------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA---------DANNEYGVFEFYQ 70 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc---------cCcccceEEEEEE
Confidence 35789999983 23388999999999999999999999999999 88999999987 8999999999999
Q ss_pred CCEEEec
Q 030610 167 NFFVLLT 173 (174)
Q Consensus 167 ~G~~v~~ 173 (174)
+|+++.+
T Consensus 71 ~g~~i~r 77 (204)
T PTZ00062 71 NSQLINS 77 (204)
T ss_pred CCEEEee
Confidence 9998864
No 59
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.65 E-value=7.3e-16 Score=130.25 Aligned_cols=78 Identities=28% Similarity=0.508 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC---CeEEEEEEccCChHHHHHHcCCCCCCEEEE
Q 030610 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~ 164 (174)
+.++|+.++ +.+++++|+|||+||++|+.+.|.++++++.+.+ ++.|++|||+.+++ +|++|+|.++||+++
T Consensus 7 ~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 7 TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD-LAQKYGVSGYPTLKI 81 (462)
T ss_pred CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH-HHHhCCCccccEEEE
Confidence 358999999 6788999999999999999999999999988743 49999999999986 999999999999999
Q ss_pred eeCCEE
Q 030610 165 NSNFFV 170 (174)
Q Consensus 165 ~~~G~~ 170 (174)
|++|+.
T Consensus 82 ~~~g~~ 87 (462)
T TIGR01130 82 FRNGED 87 (462)
T ss_pred EeCCcc
Confidence 999985
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.65 E-value=8.6e-16 Score=130.82 Aligned_cols=78 Identities=28% Similarity=0.465 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHHcCCCCCCEEEEe
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMKMPTIQVN 165 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~ 165 (174)
.++|+.++ ..++.++|+|||+||++|+++.|.+++++..+. .++.+++|||+.+.+ +|++|+|.++||+++|
T Consensus 39 ~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~-l~~~~~i~~~Pt~~~~ 113 (477)
T PTZ00102 39 DSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME-LAQEFGVRGYPTIKFF 113 (477)
T ss_pred hhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH-HHHhcCCCcccEEEEE
Confidence 58999998 678899999999999999999999999988774 469999999999986 9999999999999999
Q ss_pred eCCEEE
Q 030610 166 SNFFVL 171 (174)
Q Consensus 166 ~~G~~v 171 (174)
++|+.+
T Consensus 114 ~~g~~~ 119 (477)
T PTZ00102 114 NKGNPV 119 (477)
T ss_pred ECCceE
Confidence 998765
No 61
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.65 E-value=1.8e-15 Score=107.26 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCChHHHHH--------HcCCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVA--------RAGVM 157 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~l~~--------~~~v~ 157 (174)
.+.++++. +++|+|+|+|+|+||++|+.|.+.. .+++..++.++.++++|.++.++ +++ .|++.
T Consensus 5 ~eal~~Ak----~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~-~~~~~~~~~~~~~~~~ 79 (124)
T cd02955 5 EEAFEKAR----REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD-VDKIYMNAAQAMTGQG 79 (124)
T ss_pred HHHHHHHH----HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH-HHHHHHHHHHHhcCCC
Confidence 35566666 8899999999999999999998743 46777776789999999999875 654 35899
Q ss_pred CCCEEEEe-eCCEEEec
Q 030610 158 KMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 158 ~~Pt~~~~-~~G~~v~~ 173 (174)
++|+++|+ .+|+++..
T Consensus 80 G~Pt~vfl~~~G~~~~~ 96 (124)
T cd02955 80 GWPLNVFLTPDLKPFFG 96 (124)
T ss_pred CCCEEEEECCCCCEEee
Confidence 99999999 77998865
No 62
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.62 E-value=3.3e-15 Score=108.66 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=61.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC--------CeEEEEEEccCCh------------------------H
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--------RLRFYNVDVNAVP------------------------H 148 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~--------~v~~~~vd~d~~~------------------------~ 148 (174)
-.+|+++|+|||+||++|+.++|.|.++++++++ ++.++.|+.|++. .
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 4589999999999999999999999998876643 5899999876531 1
Q ss_pred HHHHHcCCCCCCEEEEe-eCCEEEec
Q 030610 149 KLVARAGVMKMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~-~~G~~v~~ 173 (174)
.+++.|++.++||++++ ++|+++..
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 47788999999999999 68998864
No 63
>PTZ00102 disulphide isomerase; Provisional
Probab=99.62 E-value=3.2e-15 Score=127.31 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC--CeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
.++|++.+. +.+++|+|+|||+||++|+.+.|.|+++++.+.+ .+.++++|++.+.. .++.++++++||+++|+
T Consensus 364 ~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~~~v~~~Pt~~~~~ 439 (477)
T PTZ00102 364 GNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-PLEEFSWSAFPTILFVK 439 (477)
T ss_pred ccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-chhcCCCcccCeEEEEE
Confidence 588988864 7789999999999999999999999999999854 58999999999875 89999999999999998
Q ss_pred CCEEE
Q 030610 167 NFFVL 171 (174)
Q Consensus 167 ~G~~v 171 (174)
+|+.+
T Consensus 440 ~~~~~ 444 (477)
T PTZ00102 440 AGERT 444 (477)
T ss_pred CCCcc
Confidence 87654
No 64
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.60 E-value=1.2e-15 Score=120.74 Aligned_cols=71 Identities=18% Similarity=0.420 Sum_probs=65.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC---CeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
..+..++|+||||||++|+++.|.|.++.-++++ .+++.++|++..+. ++..++|+++||+.+|++|..+-
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a-iAnefgiqGYPTIk~~kgd~a~d 114 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA-IANEFGIQGYPTIKFFKGDHAID 114 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh-hHhhhccCCCceEEEecCCeeee
Confidence 5688999999999999999999999999887754 69999999999996 99999999999999999997664
No 65
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.60 E-value=6.6e-15 Score=128.25 Aligned_cols=89 Identities=20% Similarity=0.320 Sum_probs=75.5
Q ss_pred cccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCCh---HHHHHHcC
Q 030610 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP---HKLVARAG 155 (174)
Q Consensus 82 ~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~ 155 (174)
...++.+.+++++.+++++.++|+|+|+|||+||++|+.+.+.. +++.+++ +++.++++|++++. .+++++|+
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-~~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-ADTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-cCCEEEEEECCCCChhhHHHHHHcC
Confidence 35567788999999987767799999999999999999999875 6788888 57999999998652 25899999
Q ss_pred CCCCCEEEEee-CCEEE
Q 030610 156 VMKMPTIQVNS-NFFVL 171 (174)
Q Consensus 156 v~~~Pt~~~~~-~G~~v 171 (174)
+.++||+++|+ +|+++
T Consensus 532 v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 532 VLGLPTILFFDAQGQEI 548 (571)
T ss_pred CCCCCEEEEECCCCCCc
Confidence 99999999995 88874
No 66
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.60 E-value=8.3e-15 Score=95.87 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=56.5
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEE
Q 030610 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFV 170 (174)
Q Consensus 106 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~ 170 (174)
.+..||++||++|+.+.|.+++++++++..+.+++||++++++ ++++|++.++||+++ +|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~vPt~~~--~g~~ 63 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-KAMEYGIMAVPAIVI--NGDV 63 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-HHHHcCCccCCEEEE--CCEE
Confidence 4678999999999999999999999997789999999999986 999999999999986 7764
No 67
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.60 E-value=6.5e-15 Score=100.46 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=64.3
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCC--CCCEEEEeeC--CEE
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--KMPTIQVNSN--FFV 170 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~--~~Pt~~~~~~--G~~ 170 (174)
..++++++.||++||++|+.+.|.++++++++++++.|++||++++++ +++.|++. ++|+++++++ |++
T Consensus 10 ~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~-~~~~~~i~~~~~P~~~~~~~~~~~k 82 (103)
T cd02982 10 ESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR-HLEYFGLKEEDLPVIAIINLSDGKK 82 (103)
T ss_pred hcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH-HHHHcCCChhhCCEEEEEecccccc
Confidence 347899999999999999999999999999999899999999999986 99999999 9999999988 654
No 68
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.58 E-value=2.6e-14 Score=96.23 Aligned_cols=68 Identities=25% Similarity=0.502 Sum_probs=57.0
Q ss_pred CCeEEEEEecCCCHhhHhhhHHHHHHHHHhC--CCeEEEEEEccCC------------------------hHHHHHHcCC
Q 030610 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAV------------------------PHKLVARAGV 156 (174)
Q Consensus 103 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~------------------------~~~l~~~~~v 156 (174)
||+++|+|||+||++|+...|.|.++.+.|+ +++.++.|+.|+. ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999997 6899999998764 1147889999
Q ss_pred CCCCEEEEe-eCCEE
Q 030610 157 MKMPTIQVN-SNFFV 170 (174)
Q Consensus 157 ~~~Pt~~~~-~~G~~ 170 (174)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999999999 66764
No 69
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.57 E-value=1.7e-14 Score=102.81 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=60.8
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC---CeEEEEEEccCCh-----------------------HHHHHHc
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVP-----------------------HKLVARA 154 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~-----------------------~~l~~~~ 154 (174)
-.++++||+||++||++|+.+.|.+.++++++.+ ++.++.|++|... ..+++.|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 3588999999999999999999999999888843 5778878876542 1477899
Q ss_pred CCCCCCEEEEe-eCCEEEec
Q 030610 155 GVMKMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 155 ~v~~~Pt~~~~-~~G~~v~~ 173 (174)
+|.++|+++++ ++|+++.+
T Consensus 96 ~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 96 KIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCCEEEEECCCCCEEcc
Confidence 99999999999 58988754
No 70
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.57 E-value=1.7e-14 Score=103.09 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=60.9
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC---CeEEEEEEccCCh------------------------HHHHHH
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVP------------------------HKLVAR 153 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~------------------------~~l~~~ 153 (174)
-.+++++|+||++||++|+.+.|.++++++++++ ++.++.|++|... ..+.+.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 4689999999999999999999999999998864 5788888877542 136678
Q ss_pred cCCCCCCEEEEe-eCCEEEec
Q 030610 154 AGVMKMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 154 ~~v~~~Pt~~~~-~~G~~v~~ 173 (174)
|+|.++|+++++ ++|+++..
T Consensus 95 ~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred cCCCCCCEEEEECCCCCEEch
Confidence 999999999999 58888753
No 71
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.56 E-value=2.6e-14 Score=90.37 Aligned_cols=63 Identities=27% Similarity=0.372 Sum_probs=55.8
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 106 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
-++.||++||++|+.+.+.++++++.+ +++.+..+|++++++ +++++++.++||+++ +|+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~-l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPD-LADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHh-HHHHcCCcccCEEEE--CCEEEE
Confidence 367899999999999999999998775 789999999999986 999999999999865 677664
No 72
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.55 E-value=1.2e-14 Score=114.92 Aligned_cols=78 Identities=26% Similarity=0.458 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC-----CCeEEEEEEccCChHHHHHHcCCCCCCEEEE
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-----PRLRFYNVDVNAVPHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-----~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~ 164 (174)
++++.++ +...+|+|.|||+||+..+.++|.+++.++.++ +++.+++|||+.+.. ++.+|.|..+||+.+
T Consensus 4 ~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~-ia~ky~I~KyPTlKv 78 (375)
T KOG0912|consen 4 ENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD-IADKYHINKYPTLKV 78 (375)
T ss_pred ccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH-HhhhhccccCceeee
Confidence 6788888 789999999999999999999999999888762 479999999999986 999999999999999
Q ss_pred eeCCEEEe
Q 030610 165 NSNFFVLL 172 (174)
Q Consensus 165 ~~~G~~v~ 172 (174)
|+||.+..
T Consensus 79 frnG~~~~ 86 (375)
T KOG0912|consen 79 FRNGEMMK 86 (375)
T ss_pred eeccchhh
Confidence 99998754
No 73
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.54 E-value=3.7e-14 Score=92.26 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=51.6
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
|.||++||++|+.+.|.+++++++++..+.+++|| +.+ .+.+|++.++||+++ ||+++.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~-~a~~~~v~~vPti~i--~G~~~~ 61 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMN-EILEAGVTATPGVAV--DGELVI 61 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHH-HHHHcCCCcCCEEEE--CCEEEE
Confidence 78999999999999999999999997788987777 333 478899999999999 888764
No 74
>PHA02125 thioredoxin-like protein
Probab=99.53 E-value=4.3e-14 Score=91.63 Aligned_cols=55 Identities=29% Similarity=0.593 Sum_probs=47.9
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEE
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
+++|||+||++|+.+.|.|+++. +.+++||.+++.+ ++++|+|.++||++ +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~-l~~~~~v~~~PT~~---~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE-LTAKHHIRSLPTLV---NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH-HHHHcCCceeCeEE---CCEEE
Confidence 78999999999999999998653 4678999999886 99999999999998 56654
No 75
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.52 E-value=4.4e-14 Score=119.38 Aligned_cols=76 Identities=25% Similarity=0.441 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC---CeEEEEEEccCChHHHHHHcCCCCCCEEEEe
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMKMPTIQVN 165 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~ 165 (174)
..+|++++. +.++.++|+|||+||++|+.+.|.++++++.+++ .+.|+++|++.+. +.. +++.++||+++|
T Consensus 353 ~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~-~~i~~~Pt~~~~ 426 (462)
T TIGR01130 353 GKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPP-FEVEGFPTIKFV 426 (462)
T ss_pred CcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCC-CCccccCEEEEE
Confidence 578988874 6799999999999999999999999999999976 7999999999874 455 999999999999
Q ss_pred eCCEE
Q 030610 166 SNFFV 170 (174)
Q Consensus 166 ~~G~~ 170 (174)
++|+.
T Consensus 427 ~~~~~ 431 (462)
T TIGR01130 427 PAGKK 431 (462)
T ss_pred eCCCC
Confidence 98865
No 76
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.50 E-value=1.4e-13 Score=106.39 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=56.9
Q ss_pred CCeEEEEEec---CCCHhhHhhhHHHHHHHHHhCCC--eEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEE
Q 030610 103 DESVIIVWMA---SWCRKCIYLKPKLEKLAADYHPR--LRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 103 ~k~vlV~F~a---~wC~~C~~~~p~l~~l~~~~~~~--v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
+...++.|++ +||++|+.+.|.++++++++ ++ +.++.+|.+++++ ++++|+|.++||+++|++|+.+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~-~~~~i~~v~vd~~~~~~-l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS-PKLKLEIYDFDTPEDKE-EAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC-CCceEEEEecCCcccHH-HHHHcCCCccCEEEEEeCCeee
Confidence 4455666877 99999999999999999999 44 4566666668886 9999999999999999999876
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.50 E-value=2.7e-13 Score=95.96 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=56.7
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEc-----------------------cCChHHHHHHcCCC
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV-----------------------NAVPHKLVARAGVM 157 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~~l~~~~~v~ 157 (174)
..+++++|+||++||++|+.+.|.++++.+.+ ++.++.|+. |.+. .+++.|++.
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~v~ 99 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG-RVGIDLGVY 99 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc-hHHHhcCCC
Confidence 45899999999999999999999999998876 366666663 3444 388899999
Q ss_pred CCCEEEEe-eCCEEEec
Q 030610 158 KMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 158 ~~Pt~~~~-~~G~~v~~ 173 (174)
++|+.+++ ++|+++..
T Consensus 100 ~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 100 GVPETFLIDGDGIIRYK 116 (127)
T ss_pred CCCeEEEECCCceEEEE
Confidence 99966666 79998753
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.47 E-value=3.2e-13 Score=104.32 Aligned_cols=67 Identities=24% Similarity=0.328 Sum_probs=59.5
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEE
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFV 170 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~ 170 (174)
.+..+++.||++||++|+.+.|.+++++.++ +++.+.++|.+.+++ ++++|+|.++||++++++|+.
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~-~~~~~~V~~vPtl~i~~~~~~ 198 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPD-LAEKYGVMSVPKIVINKGVEE 198 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHH-HHHHhCCccCCEEEEecCCEE
Confidence 4455566699999999999999999999886 789999999999996 999999999999999998863
No 79
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.46 E-value=5.3e-13 Score=106.48 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=56.9
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC-----------ChHHHHHHcCCCCCCEEEEeeC-C
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-----------VPHKLVARAGVMKMPTIQVNSN-F 168 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~l~~~~~v~~~Pt~~~~~~-G 168 (174)
-.++++||+|||+||++|+.+.|.|++++++|+ +.++.|++|. +.+ ++++|+|.++||++++++ |
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~-la~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAG-QAQQLKIRTVPAVFLADPDP 240 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHH-HHHHcCCCcCCeEEEEECCC
Confidence 468999999999999999999999999999994 6666666665 233 899999999999999975 5
Q ss_pred EEE
Q 030610 169 FVL 171 (174)
Q Consensus 169 ~~v 171 (174)
+.+
T Consensus 241 ~~v 243 (271)
T TIGR02740 241 NQF 243 (271)
T ss_pred CEE
Confidence 443
No 80
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.46 E-value=8e-14 Score=96.50 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=56.5
Q ss_pred hcCCCeEEEEEecCCCHhhHhhhHHHHHH---HHHhCCCeEEEEEEccCCh-------------------HHHHHHcCCC
Q 030610 100 QQLDESVIIVWMASWCRKCIYLKPKLEKL---AADYHPRLRFYNVDVNAVP-------------------HKLVARAGVM 157 (174)
Q Consensus 100 ~~~~k~vlV~F~a~wC~~C~~~~p~l~~l---~~~~~~~v~~~~vd~d~~~-------------------~~l~~~~~v~ 157 (174)
+.+++++++.||++||++|+.+.+.+.+. ...+++++.++.++++... .+++++|+|.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 36899999999999999999999999864 4445557889999987542 1489999999
Q ss_pred CCCEEEEee-CCEEEe
Q 030610 158 KMPTIQVNS-NFFVLL 172 (174)
Q Consensus 158 ~~Pt~~~~~-~G~~v~ 172 (174)
++||++++. +|+++.
T Consensus 82 gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVY 97 (112)
T ss_dssp SSSEEEECTTTSCEEE
T ss_pred ccCEEEEEcCCCCEEE
Confidence 999999994 898764
No 81
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.46 E-value=3.7e-13 Score=98.76 Aligned_cols=68 Identities=15% Similarity=0.294 Sum_probs=51.6
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh-----------HHHH-HHc---CCCCCCEEEEe
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-----------HKLV-ARA---GVMKMPTIQVN 165 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----------~~l~-~~~---~v~~~Pt~~~~ 165 (174)
..++..+|+|||+||++|+++.|.+++++++|+ +.++.|++|... .... ..| ++.++||++++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 446777999999999999999999999999983 556666665421 1233 445 88999999999
Q ss_pred -eCCEE
Q 030610 166 -SNFFV 170 (174)
Q Consensus 166 -~~G~~ 170 (174)
++|++
T Consensus 126 D~~G~~ 131 (153)
T TIGR02738 126 NVNTRK 131 (153)
T ss_pred eCCCCE
Confidence 45554
No 82
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.46 E-value=3.6e-13 Score=115.44 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=59.2
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEE----------------------------ccCChHHHH
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVD----------------------------VNAVPHKLV 151 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd----------------------------~d~~~~~l~ 151 (174)
+.+++|||+|||+||++|+.++|.|++++++++ +++.|+.|. +|.+. .++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~-~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGG-TLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccH-HHH
Confidence 579999999999999999999999999999986 356666553 34444 488
Q ss_pred HHcCCCCCCEEEEe-eCCEEEe
Q 030610 152 ARAGVMKMPTIQVN-SNFFVLL 172 (174)
Q Consensus 152 ~~~~v~~~Pt~~~~-~~G~~v~ 172 (174)
+.|+|.++||++++ ++|+++.
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~ 154 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQR 154 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEE
Confidence 99999999999666 7999875
No 83
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.46 E-value=5.6e-13 Score=92.43 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=56.4
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC--------------------hHHHHHHcCCCCCCE
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV--------------------PHKLVARAGVMKMPT 161 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--------------------~~~l~~~~~v~~~Pt 161 (174)
.+++++|+||++||++|+.+.|.++++++++.+++.++.+. +.. ...+.+.|++.++|+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~ 98 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPY 98 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCe
Confidence 38999999999999999999999999998886677666552 111 113667888999999
Q ss_pred EEEe-eCCEEEec
Q 030610 162 IQVN-SNFFVLLT 173 (174)
Q Consensus 162 ~~~~-~~G~~v~~ 173 (174)
.+++ ++|++++.
T Consensus 99 ~~vid~~G~v~~~ 111 (114)
T cd02967 99 AVLLDEAGVIAAK 111 (114)
T ss_pred EEEECCCCeEEec
Confidence 9888 57988764
No 84
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.45 E-value=1e-12 Score=87.95 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=61.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
-.+..-+..|+++||++|..+.+.++++++.+ +++.+..+|.++.++ ++++|+|.++||+++ ||+++.
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e-~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQD-EVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHH-HHHHcCCccCCEEEE--CCEEEE
Confidence 34677888999999999999999999999887 789999999999986 999999999999965 888765
No 85
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.6e-13 Score=113.19 Aligned_cols=67 Identities=25% Similarity=0.486 Sum_probs=64.8
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCC
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
..++.++|.||+|||++|+.+.|.+.+++..+++.+.++.|||+++.+ +|++|+|.++||+.+|.+|
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~-~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD-LCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH-HHHhcCCccCcEEEEEcCC
Confidence 789999999999999999999999999999998889999999999996 9999999999999999988
No 86
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.43 E-value=4.4e-13 Score=88.27 Aligned_cols=74 Identities=19% Similarity=0.375 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 91 ~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
++++.++.|++++|+++|+|+|+||++|+.+...+ .++.+.+..++.++++|.+.... .. .+...++|+++|+.
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~-~~-~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP-NA-QFDRQGYPTFFFLD 81 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH-HH-HHHHCSSSEEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh-hH-HhCCccCCEEEEeC
Confidence 56677776668999999999999999999999888 56666566899999999987654 22 22226799999985
No 87
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.41 E-value=1.8e-12 Score=97.88 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=55.5
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH----------------------HHHHHcCCCC
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH----------------------KLVARAGVMK 158 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----------------------~l~~~~~v~~ 158 (174)
..+++++|+|||+||++|+.+.|.+.++.+ .++.++.|+.+++.+ .+.+.|++.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~---~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHH---cCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 468999999999999999999999998864 357788887654321 2455789999
Q ss_pred CCEEEEe-eCCEEEec
Q 030610 159 MPTIQVN-SNFFVLLT 173 (174)
Q Consensus 159 ~Pt~~~~-~~G~~v~~ 173 (174)
+|+.+++ ++|+++.+
T Consensus 143 ~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 143 APETFLIDGNGIIRYR 158 (185)
T ss_pred CCeEEEECCCceEEEE
Confidence 9977666 79988754
No 88
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.40 E-value=1.4e-12 Score=92.88 Aligned_cols=81 Identities=12% Similarity=0.219 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEe-
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVN- 165 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~- 165 (174)
.+|++.++.+++++|+++|+|+++||++|+.+...+ .++.+..+.++..+.++.+.....+ ...+ .++||++|+
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~-~~~g-~~vPtivFld 87 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNL-SPDG-QYVPRIMFVD 87 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCc-CccC-cccCeEEEEC
Confidence 478888877779999999999999999999999876 4566666557887788876332101 1233 689999999
Q ss_pred eCCEEEe
Q 030610 166 SNFFVLL 172 (174)
Q Consensus 166 ~~G~~v~ 172 (174)
.+|+++.
T Consensus 88 ~~g~vi~ 94 (130)
T cd02960 88 PSLTVRA 94 (130)
T ss_pred CCCCCcc
Confidence 6787664
No 89
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.40 E-value=3e-12 Score=87.43 Aligned_cols=72 Identities=26% Similarity=0.410 Sum_probs=63.5
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCC-----------------------hHHHHHHcCC
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV-----------------------PHKLVARAGV 156 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~-----------------------~~~l~~~~~v 156 (174)
..+++++|.||++||++|+...+.+.++.++++ +++.++.|++|.. . ++.+.|++
T Consensus 17 ~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 95 (116)
T cd02966 17 LKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG-ELAKAYGV 95 (116)
T ss_pred cCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc-hHHHhcCc
Confidence 348999999999999999999999999999986 5799999999885 4 38999999
Q ss_pred CCCCEEEEe-eCCEEEec
Q 030610 157 MKMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 157 ~~~Pt~~~~-~~G~~v~~ 173 (174)
.++|+++++ ++|+++..
T Consensus 96 ~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 96 RGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CccceEEEECCCCcEEEE
Confidence 999999999 58888754
No 90
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.38 E-value=3.9e-12 Score=90.10 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEcc---------------------------CChHHHHHH
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN---------------------------AVPHKLVAR 153 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d---------------------------~~~~~l~~~ 153 (174)
.+++++|+||++||++|+...|.|+++.+++++ ++.++.|+.+ ... ++.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~-~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY-ATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch-HHHHH
Confidence 479999999999999999999999999999964 6888887542 112 36778
Q ss_pred cCCCCCCEEEEe-eCCEEEec
Q 030610 154 AGVMKMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 154 ~~v~~~Pt~~~~-~~G~~v~~ 173 (174)
|++.++|+.+++ ++|+++..
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEE
Confidence 999999999999 68988764
No 91
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.36 E-value=7.4e-12 Score=93.55 Aligned_cols=69 Identities=30% Similarity=0.409 Sum_probs=54.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEc-----------------------cCChHHHHHHcCCC
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV-----------------------NAVPHKLVARAGVM 157 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~~l~~~~~v~ 157 (174)
..+++++|+||++||++|+.+.|.++++.+. ++.++.|+. |.+. .+.+.|++.
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~-~~~~~~~v~ 136 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNG-KLGLDLGVY 136 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCC-chHHhcCCe
Confidence 4689999999999999999999999988653 466666654 2233 367889999
Q ss_pred CCCEEEEe-eCCEEEec
Q 030610 158 KMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 158 ~~Pt~~~~-~~G~~v~~ 173 (174)
++|+.+++ ++|+++..
T Consensus 137 ~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 137 GAPETFLVDGNGVILYR 153 (173)
T ss_pred eCCeEEEEcCCceEEEE
Confidence 99976666 79998753
No 92
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.35 E-value=9e-12 Score=86.89 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCCh-HHHHHHcCCCCCCEEEEe
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMKMPTIQVN 165 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~-~~l~~~~~v~~~Pt~~~~ 165 (174)
.+|++++..|+.++|+++|+|+++||++|+.+.... +++.+.++.++.++.+|++... ..++..|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 357777777778999999999999999999998754 5677777778999999997522 258999999999999999
Q ss_pred e--CCEEEec
Q 030610 166 S--NFFVLLT 173 (174)
Q Consensus 166 ~--~G~~v~~ 173 (174)
. +|+++.+
T Consensus 84 ~~~~g~~l~~ 93 (114)
T cd02958 84 DPRTGEVLKV 93 (114)
T ss_pred eCccCcEeEE
Confidence 4 6887754
No 93
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.33 E-value=5.2e-12 Score=116.81 Aligned_cols=71 Identities=24% Similarity=0.324 Sum_probs=59.8
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEc---c------------------------CChHHHHHH
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDV---N------------------------AVPHKLVAR 153 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~---d------------------------~~~~~l~~~ 153 (174)
.+|+|||+|||+||++|+.+.|.|++++++|++ ++.++.|.. | .+. .+.++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~-~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM-YLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch-HHHHh
Confidence 589999999999999999999999999999965 478877742 1 223 37789
Q ss_pred cCCCCCCEEEEe-eCCEEEec
Q 030610 154 AGVMKMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 154 ~~v~~~Pt~~~~-~~G~~v~~ 173 (174)
|+|.++|+++++ ++|+++..
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred cCCCccceEEEECCCCeEEEE
Confidence 999999999999 79998753
No 94
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.33 E-value=8.8e-12 Score=87.51 Aligned_cols=69 Identities=25% Similarity=0.444 Sum_probs=52.5
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEE---------------------ccCChHHHHHHcCCCCC
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD---------------------VNAVPHKLVARAGVMKM 159 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd---------------------~d~~~~~l~~~~~v~~~ 159 (174)
..+++++|+||++||++|+.+.|.+.++++++ .+..+.+| .|.+. +++++|+|.++
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~ 94 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDG-VISARWGVSVT 94 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhC--CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCc-HHHHhCCCCcc
Confidence 45799999999999999999999999988774 22222222 13344 49999999999
Q ss_pred CEEEEeeCCEEEe
Q 030610 160 PTIQVNSNFFVLL 172 (174)
Q Consensus 160 Pt~~~~~~G~~v~ 172 (174)
|+++++.+|+++.
T Consensus 95 P~~~vid~~gi~~ 107 (123)
T cd03011 95 PAIVIVDPGGIVF 107 (123)
T ss_pred cEEEEEcCCCeEE
Confidence 9999996555553
No 95
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.31 E-value=1.9e-11 Score=90.73 Aligned_cols=72 Identities=19% Similarity=0.400 Sum_probs=60.7
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCCh---------------------HHHHHHcCCCC
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVP---------------------HKLVARAGVMK 158 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~---------------------~~l~~~~~v~~ 158 (174)
-.+++++|+||++||++|+...+.+.++++++.+ ++.++.|++|... .++++.|++.+
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 138 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 3579999999999999999999999999999965 5888989876431 14789999999
Q ss_pred CCEEEEe-eCCEEEe
Q 030610 159 MPTIQVN-SNFFVLL 172 (174)
Q Consensus 159 ~Pt~~~~-~~G~~v~ 172 (174)
+|+++++ ++|+++.
T Consensus 139 ~P~~~lid~~g~i~~ 153 (173)
T PRK03147 139 LPTTFLIDKDGKVVK 153 (173)
T ss_pred cCeEEEECCCCcEEE
Confidence 9998888 5788763
No 96
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.31 E-value=1.5e-11 Score=88.96 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=60.1
Q ss_pred cCCCeEEEEEecC-CCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCC---------------------hHHHHHHcCCC
Q 030610 101 QLDESVIIVWMAS-WCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV---------------------PHKLVARAGVM 157 (174)
Q Consensus 101 ~~~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~---------------------~~~l~~~~~v~ 157 (174)
-.+|+++|+||++ ||++|+...|.+.++.+.|++ ++.++.|..+.. . .+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~ 104 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDG-ALAKALGVT 104 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTS-HHHHHTTCE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHH-HHHHHhCCc
Confidence 3589999999999 999999999999999998754 588887775433 3 488999998
Q ss_pred ---------CCCEEEEe-eCCEEEec
Q 030610 158 ---------KMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 158 ---------~~Pt~~~~-~~G~~v~~ 173 (174)
++|+++++ ++|+++..
T Consensus 105 ~~~~~~~~~~~P~~~lId~~G~V~~~ 130 (146)
T PF08534_consen 105 IMEDPGNGFGIPTTFLIDKDGKVVYR 130 (146)
T ss_dssp EECCTTTTSSSSEEEEEETTSBEEEE
T ss_pred cccccccCCeecEEEEEECCCEEEEE
Confidence 99998777 88988763
No 97
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.28 E-value=2.1e-11 Score=104.34 Aligned_cols=84 Identities=23% Similarity=0.371 Sum_probs=69.3
Q ss_pred cccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCChH---HHHHHcCCC
Q 030610 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPH---KLVARAGVM 157 (174)
Q Consensus 84 ~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~ 157 (174)
..+.+.+++++++++ +.+|+|+|+|||+||-.||.+.+.. .+...+. .+++..++|.+++.. ++.++|++-
T Consensus 457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 556666799999976 5567999999999999999998877 3444455 789999999988753 578999999
Q ss_pred CCCEEEEee-CCEE
Q 030610 158 KMPTIQVNS-NFFV 170 (174)
Q Consensus 158 ~~Pt~~~~~-~G~~ 170 (174)
++|++++|. +|++
T Consensus 534 G~P~~~ff~~~g~e 547 (569)
T COG4232 534 GVPTYLFFGPQGSE 547 (569)
T ss_pred CCCEEEEECCCCCc
Confidence 999999996 6664
No 98
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.7e-11 Score=102.29 Aligned_cols=78 Identities=24% Similarity=0.424 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC--CCeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
.++|...+. +.+..++|.||+|||++|+.+.|.|++++..++ ..+.++.+|++.+.. ++.+++|.++||+.+|+
T Consensus 151 ~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~-~~~~~~v~~~Pt~~~f~ 226 (383)
T KOG0191|consen 151 KDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKS-LASRLEVRGYPTLKLFP 226 (383)
T ss_pred ccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHH-HhhhhcccCCceEEEec
Confidence 367777764 679999999999999999999999999999885 579999999997765 99999999999999998
Q ss_pred CCEE
Q 030610 167 NFFV 170 (174)
Q Consensus 167 ~G~~ 170 (174)
+|..
T Consensus 227 ~~~~ 230 (383)
T KOG0191|consen 227 PGEE 230 (383)
T ss_pred CCCc
Confidence 8776
No 99
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.23 E-value=5.2e-11 Score=89.31 Aligned_cols=63 Identities=19% Similarity=0.392 Sum_probs=51.4
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC------------hHHHHHHcCC--CCCCEEEEe-eCCEEE
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV------------PHKLVARAGV--MKMPTIQVN-SNFFVL 171 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------~~~l~~~~~v--~~~Pt~~~~-~~G~~v 171 (174)
+|+||++||++|+++.|.+.+++++| ++.++.|++|.. ++.+.+.|++ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~--g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY--GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc--CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 77899999999999999999999998 367776776543 1236678995 699999999 788875
No 100
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.23 E-value=6.7e-11 Score=89.68 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=54.3
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEE-------------cc-----CChHHHHHHcCCCCCCEE
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD-------------VN-----AVPHKLVARAGVMKMPTI 162 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd-------------~d-----~~~~~l~~~~~v~~~Pt~ 162 (174)
..+++++|+||++||++|+.+.|.+.++.+.++-++.++..| .+ ... ++.+.|++.++|+.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSA-EIGMAFQVGKIPYG 150 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechh-HHHHhccCCccceE
Confidence 468999999999999999999999999987764445444321 11 122 47889999999988
Q ss_pred EEe-eCCEEEe
Q 030610 163 QVN-SNFFVLL 172 (174)
Q Consensus 163 ~~~-~~G~~v~ 172 (174)
+++ ++|+++.
T Consensus 151 ~lID~~G~I~~ 161 (189)
T TIGR02661 151 VLLDQDGKIRA 161 (189)
T ss_pred EEECCCCeEEE
Confidence 777 6898765
No 101
>smart00594 UAS UAS domain.
Probab=99.21 E-value=1.9e-10 Score=81.28 Aligned_cols=79 Identities=10% Similarity=0.141 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCChH-HHHHHcCCCCCCEEEEe
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPH-KLVARAGVMKMPTIQVN 165 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~-~l~~~~~v~~~Pt~~~~ 165 (174)
..|++++..++.++|+++|+|+++||+.|+.+.... .++.+.++.++.+..+|++.... .++.+|++.++|++.++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l 93 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIV 93 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEE
Confidence 567777777768899999999999999999998765 56677776789999999875542 58999999999999999
Q ss_pred -eCC
Q 030610 166 -SNF 168 (174)
Q Consensus 166 -~~G 168 (174)
.+|
T Consensus 94 ~~~~ 97 (122)
T smart00594 94 DPRT 97 (122)
T ss_pred ecCC
Confidence 454
No 102
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=1.1e-11 Score=105.28 Aligned_cols=76 Identities=24% Similarity=0.437 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC---CCeEEEEEEccCC-hHHHHHHcCCCCCCEEEE
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAV-PHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~-~~~l~~~~~v~~~Pt~~~ 164 (174)
.++|+..+. .+.+-.+|.||++|||+|++++|.++++++... +=+.++.|||... +..+|+.|+|.++|++.+
T Consensus 46 ~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry 122 (606)
T KOG1731|consen 46 VDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRY 122 (606)
T ss_pred hhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence 589999985 455689999999999999999999999999874 3588899998542 225999999999999999
Q ss_pred eeC
Q 030610 165 NSN 167 (174)
Q Consensus 165 ~~~ 167 (174)
|..
T Consensus 123 f~~ 125 (606)
T KOG1731|consen 123 FPP 125 (606)
T ss_pred cCC
Confidence 954
No 103
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.17 E-value=7.8e-11 Score=85.74 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=60.9
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCC---eEEEEEEccCC------------------------hHHHHHH
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPR---LRFYNVDVNAV------------------------PHKLVAR 153 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~------------------------~~~l~~~ 153 (174)
-.+|.|.++|.|.||++|+.+.|.+.++.++..++ +.++.|+.|.+ .++++++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 35799999999999999999999999999998665 88888887654 1147789
Q ss_pred cCCCCCCEEEEe-eCCEEEe
Q 030610 154 AGVMKMPTIQVN-SNFFVLL 172 (174)
Q Consensus 154 ~~v~~~Pt~~~~-~~G~~v~ 172 (174)
|+|.++|++.+. .+|..|.
T Consensus 111 y~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVT 130 (157)
T ss_pred cccCcCceeEEecCCCCEeh
Confidence 999999999888 6787764
No 104
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.17 E-value=3.1e-10 Score=80.92 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEec--CCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMA--SWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a--~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
++++..+ ..++..+|.|-. .-++-+....-.|++++++|.+ ++.+++||+|++++ ++.+|||.++||+++|+
T Consensus 25 ~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~-LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 25 SRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-IGDRFGVFRFPATLVFT 99 (132)
T ss_pred ccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH-HHHHcCCccCCEEEEEE
Confidence 6788888 556667766654 3678888889999999999964 59999999999996 99999999999999999
Q ss_pred CCEEEec
Q 030610 167 NFFVLLT 173 (174)
Q Consensus 167 ~G~~v~~ 173 (174)
||+++..
T Consensus 100 dGk~v~~ 106 (132)
T PRK11509 100 GGNYRGV 106 (132)
T ss_pred CCEEEEE
Confidence 9998853
No 105
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.17 E-value=1.6e-10 Score=78.22 Aligned_cols=67 Identities=30% Similarity=0.521 Sum_probs=60.7
Q ss_pred CCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEcc-CChHHHHHHcC--CCCCCEEEEeeCCEE
Q 030610 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAG--VMKMPTIQVNSNFFV 170 (174)
Q Consensus 103 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~l~~~~~--v~~~Pt~~~~~~G~~ 170 (174)
++++++.||++||++|+.+.|.+.++++++...+.++.+|.. ...+ +...|+ +..+|+++++.+|+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD-LAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH-HHHHHhhhhccCCeEEEEeCcch
Confidence 889999999999999999999999999999667999999996 6665 899999 999999999988865
No 106
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.10 E-value=8.2e-10 Score=82.13 Aligned_cols=72 Identities=13% Similarity=0.327 Sum_probs=60.5
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCC-------h---------------------HHHHH
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV-------P---------------------HKLVA 152 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~-------~---------------------~~l~~ 152 (174)
.++++||+||++||+.|....+.+.++.+++. .++.|+.|.+|.. + ..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 57999999999999999999999999999996 4799999987641 1 13567
Q ss_pred HcCCCCCCEEEEe-eCCEEEec
Q 030610 153 RAGVMKMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 153 ~~~v~~~Pt~~~~-~~G~~v~~ 173 (174)
.|++...|+++++ ++|++++.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEe
Confidence 8999999999999 68988754
No 107
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.09 E-value=6.8e-10 Score=84.89 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=39.2
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEcc
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (174)
.+++|||+|||+||++|+..+|.|.++.++|++ ++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 489999999999999999999999999999965 6999999874
No 108
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.09 E-value=4e-10 Score=83.01 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCChHHHHHHc--------CCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVARA--------GVM 157 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~l~~~~--------~v~ 157 (174)
.+.|+.+- .++|+++|.++.+||++|+.|...- .++++.++.++.-++||.++.|+ +...| |..
T Consensus 27 ~ea~~~Ak----~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd-id~~y~~~~~~~~~~g 101 (163)
T PF03190_consen 27 EEALEKAK----KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD-IDKIYMNAVQAMSGSG 101 (163)
T ss_dssp HHHHHHHH----HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH-HHHHHHHHHHHHHS--
T ss_pred HHHHHHHH----hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc-HHHHHHHHHHHhcCCC
Confidence 35666665 7899999999999999999988644 57788887789999999999997 87777 789
Q ss_pred CCCEEEEe-eCCEEEe
Q 030610 158 KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 158 ~~Pt~~~~-~~G~~v~ 172 (174)
|+|+.+|+ .+|+.+.
T Consensus 102 GwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 102 GWPLTVFLTPDGKPFF 117 (163)
T ss_dssp -SSEEEEE-TTS-EEE
T ss_pred CCCceEEECCCCCeee
Confidence 99999888 7888775
No 109
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.1e-10 Score=87.19 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCChHHHHHHcCCC------CC
Q 030610 87 GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVM------KM 159 (174)
Q Consensus 87 ~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~l~~~~~v~------~~ 159 (174)
++.+.+++.+.. +..+.++|.|+|.|.+.|+...|.+.+|..+|. +..+|.+||+...++ .+++|+|. .+
T Consensus 130 ~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd-~a~kfris~s~~srQL 206 (265)
T KOG0914|consen 130 TNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPD-VAAKFRISLSPGSRQL 206 (265)
T ss_pred cchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcC-hHHheeeccCcccccC
Confidence 345667777754 778899999999999999999999999999996 469999999999997 89999884 79
Q ss_pred CEEEEeeCCEEEec
Q 030610 160 PTIQVNSNFFVLLT 173 (174)
Q Consensus 160 Pt~~~~~~G~~v~~ 173 (174)
||+++|++|+++.+
T Consensus 207 PT~ilFq~gkE~~R 220 (265)
T KOG0914|consen 207 PTYILFQKGKEVSR 220 (265)
T ss_pred CeEEEEccchhhhc
Confidence 99999999998764
No 110
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.05 E-value=4.3e-10 Score=89.39 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=70.0
Q ss_pred cccccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCC
Q 030610 80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKM 159 (174)
Q Consensus 80 ~~~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~ 159 (174)
...+.++.+.++|-+++.+. ..+..|||+||-+.++.|..+...|..||.+| +.++|++|..+..+ +..+|.+..+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~--~~~~f~~~~L 199 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP--ASENFPDKNL 199 (265)
T ss_dssp --SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC--TTTTS-TTC-
T ss_pred CceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC--cccCCcccCC
Confidence 44567777788898888432 33568999999999999999999999999999 99999999998764 5788999999
Q ss_pred CEEEEeeCCEEEec
Q 030610 160 PTIQVNSNFFVLLT 173 (174)
Q Consensus 160 Pt~~~~~~G~~v~~ 173 (174)
||+++|++|.++..
T Consensus 200 PtllvYk~G~l~~~ 213 (265)
T PF02114_consen 200 PTLLVYKNGDLIGN 213 (265)
T ss_dssp SEEEEEETTEEEEE
T ss_pred CEEEEEECCEEEEe
Confidence 99999999998764
No 111
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.01 E-value=4.1e-09 Score=73.98 Aligned_cols=85 Identities=19% Similarity=0.376 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEec-------CCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh-----H-HHHH-
Q 030610 87 GSESQFDRVIAEAQQLDESVIIVWMA-------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-----H-KLVA- 152 (174)
Q Consensus 87 ~s~~~f~~~~~~~~~~~k~vlV~F~a-------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----~-~l~~- 152 (174)
.+.++|.+++......+++++|.|++ +|||.|.+..|.+++......++..++.+.+..-+ . .+.+
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 35678888887544677999999985 59999999999999988877668999988873221 1 2555
Q ss_pred -HcCCCCCCEEEEeeCCEEE
Q 030610 153 -RAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 153 -~~~v~~~Pt~~~~~~G~~v 171 (174)
++++.++||++-+..|+.+
T Consensus 83 p~~~l~~IPTLi~~~~~~rL 102 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETGERL 102 (119)
T ss_dssp -CC---SSSEEEECTSS-EE
T ss_pred ceeeeeecceEEEECCCCcc
Confidence 6999999999999776554
No 112
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.01 E-value=2.4e-09 Score=64.62 Aligned_cols=60 Identities=35% Similarity=0.589 Sum_probs=51.9
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHH---HHcCCCCCCEEEEeeCC
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV---ARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~---~~~~v~~~Pt~~~~~~G 168 (174)
++.||++||++|+.+.+.+.++ .....++.+..+|++...+ .. ..+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPA-LEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChH-HhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 4555789999999998875 44 38999999999999876
No 113
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.00 E-value=2.7e-09 Score=74.62 Aligned_cols=70 Identities=16% Similarity=0.386 Sum_probs=59.7
Q ss_pred CCCeEEEEEecC-CCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCC---------------------hHHHHHHcCCC-
Q 030610 102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV---------------------PHKLVARAGVM- 157 (174)
Q Consensus 102 ~~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~---------------------~~~l~~~~~v~- 157 (174)
.+++++|.||+. ||+.|+...+.|.++..+++. ++.++.|..|.. . .+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDG-ELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTS-HHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcch-HHHHHcCCcc
Confidence 479999999999 999999999999999999854 788888886432 3 488999999
Q ss_pred -----CCCEEEEe-eCCEEEe
Q 030610 158 -----KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 158 -----~~Pt~~~~-~~G~~v~ 172 (174)
.+|+++++ ++|++++
T Consensus 103 ~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTTSEESEEEEEEETTSBEEE
T ss_pred ccCCceEeEEEEECCCCEEEe
Confidence 99999988 6787765
No 114
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.00 E-value=1.2e-09 Score=82.31 Aligned_cols=69 Identities=6% Similarity=-0.066 Sum_probs=52.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEE------EEEEccC-----------------------------
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF------YNVDVNA----------------------------- 145 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~------~~vd~d~----------------------------- 145 (174)
-.+|+++|+|||.||++|+...|.+++++++ ++.+ +-||.|+
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 4699999999999999999999999999653 2333 3344332
Q ss_pred ChHHHHHHcCCCCCCEE-EEe-eCCEEEec
Q 030610 146 VPHKLVARAGVMKMPTI-QVN-SNFFVLLT 173 (174)
Q Consensus 146 ~~~~l~~~~~v~~~Pt~-~~~-~~G~~v~~ 173 (174)
.. .+...|++.++|+. +++ ++|+++..
T Consensus 134 ~g-~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 134 KG-AVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred cc-hHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 22 36789999999876 555 88988753
No 115
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.99 E-value=3.1e-09 Score=77.69 Aligned_cols=42 Identities=26% Similarity=0.255 Sum_probs=37.9
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEcc
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (174)
.+|+|+|+|||+||+ |+...|.|++++++|++ ++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 489999999999999 99999999999999964 6999988764
No 116
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.99 E-value=3.7e-09 Score=82.72 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=39.2
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEcc
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (174)
.++++||+|||+||++|+...|.|.+++++|++ ++.++-|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 479999999999999999999999999999965 5999999874
No 117
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.96 E-value=1.8e-09 Score=69.38 Aligned_cols=58 Identities=29% Similarity=0.469 Sum_probs=44.7
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHH-----cCCCCCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR-----AGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~-----~~v~~~Pt~~~~~~G~~v~ 172 (174)
++.||++||++|+++.+.|+++. +.+-.+|+++.+. .... +++.++|++ ++.+|+.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~-~~~~~~~~~~~~~~vP~i-~~~~g~~l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEG-AADRVVSVNNGNMTVPTV-KFADGSFLT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHh-HHHHHHHHhCCCceeCEE-EECCCeEec
Confidence 57899999999999999987753 3445688887764 4444 389999997 578887664
No 118
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.96 E-value=2.2e-09 Score=80.21 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=80.6
Q ss_pred CCCcccccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCC
Q 030610 77 APVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156 (174)
Q Consensus 77 ~~~~~~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v 156 (174)
..+..+..++.+..+|-+.+ .....||++||-+.-..|+.|...|+.||+.+ -..+|++||+...|- |+.+++|
T Consensus 62 ~~GhG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-~eTrFikvnae~~PF-lv~kL~I 135 (211)
T KOG1672|consen 62 SKGHGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-VETRFIKVNAEKAPF-LVTKLNI 135 (211)
T ss_pred HcCCceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhc-ccceEEEEecccCce-eeeeeee
Confidence 34455677888889998888 77899999999999999999999999999998 889999999999996 9999999
Q ss_pred CCCCEEEEeeCCEEE
Q 030610 157 MKMPTIQVNSNFFVL 171 (174)
Q Consensus 157 ~~~Pt~~~~~~G~~v 171 (174)
..+|++.+|+||+.+
T Consensus 136 kVLP~v~l~k~g~~~ 150 (211)
T KOG1672|consen 136 KVLPTVALFKNGKTV 150 (211)
T ss_pred eEeeeEEEEEcCEEE
Confidence 999999999999865
No 119
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.96 E-value=5e-09 Score=66.33 Aligned_cols=57 Identities=21% Similarity=0.464 Sum_probs=46.0
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEEEEeeCCEEE
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
+..|+++||++|+.+.+.|++ .++.+..+|++.+++ ++.+.+++.++|++++. |+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~~ 61 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKII 61 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEEE
Confidence 568999999999999988875 357788899987753 35678999999999885 6654
No 120
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=1.1e-08 Score=71.38 Aligned_cols=86 Identities=23% Similarity=0.311 Sum_probs=77.0
Q ss_pred cccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCE
Q 030610 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (174)
Q Consensus 82 ~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt 161 (174)
-+..++|..+.++++.. ...+.|+|.|.-.|-+.|..+...|.++++...+-++++-+|+|+.++ +.+.|++...||
T Consensus 4 lLp~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~-~~~~~~l~~p~t 80 (142)
T KOG3414|consen 4 LLPTLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD-FVKMYELYDPPT 80 (142)
T ss_pred eccccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh-hhhhhcccCCce
Confidence 35667889999999976 889999999999999999999999999999997778899999999996 999999999999
Q ss_pred EEEeeCCEE
Q 030610 162 IQVNSNFFV 170 (174)
Q Consensus 162 ~~~~~~G~~ 170 (174)
+.||-+++-
T Consensus 81 vmfFfn~kH 89 (142)
T KOG3414|consen 81 VMFFFNNKH 89 (142)
T ss_pred EEEEEcCce
Confidence 988866553
No 121
>PLN02412 probable glutathione peroxidase
Probab=98.94 E-value=6.7e-09 Score=77.25 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=39.1
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEcc
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (174)
.++++||+|||+||++|+...|.|.++.++|++ ++.++-|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 479999999999999999999999999999965 5999999874
No 122
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.89 E-value=1.8e-08 Score=72.52 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=54.1
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCC---------------------hHHHHHHcCCC--
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV---------------------PHKLVARAGVM-- 157 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~---------------------~~~l~~~~~v~-- 157 (174)
.++.+|+.||++||+.|+...|.|.++.+++. .++.++.|..+.. . .+.+.|++.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~-~~~~~~g~~~~ 101 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDR-KLYRALGLVRS 101 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCch-hHHHHcCceec
Confidence 34555666679999999999999999999985 4688888875432 2 477888884
Q ss_pred ---------------------------CCCEEEEe-eCCEEEe
Q 030610 158 ---------------------------KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 158 ---------------------------~~Pt~~~~-~~G~~v~ 172 (174)
..|+.+++ ++|+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~ 144 (149)
T cd02970 102 LPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF 144 (149)
T ss_pred CcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence 78998888 5677765
No 123
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.84 E-value=1.5e-08 Score=66.26 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=48.2
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH----HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH----KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
++.|+++||++|+.+.+.|+++. ..+.+.++.+|.+.+.. .+.+.+++..+|++ |-+|+.+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ig 66 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFIG 66 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 47899999999999999999976 43458888888775542 26677899999998 45777654
No 124
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.83 E-value=2.6e-08 Score=74.05 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=56.1
Q ss_pred CCCeEEEEEecCC-CHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC----------------------hHHHHHHcCCCC
Q 030610 102 LDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV----------------------PHKLVARAGVMK 158 (174)
Q Consensus 102 ~~k~vlV~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----------------------~~~l~~~~~v~~ 158 (174)
.+|.++|+||+.| |++|....|.|.++++++ .++.++.|+.|.. ..++++.|++..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 4889999999999 999999999999999998 5788887875431 114778888877
Q ss_pred CC---------EEEEe-eCCEEEec
Q 030610 159 MP---------TIQVN-SNFFVLLT 173 (174)
Q Consensus 159 ~P---------t~~~~-~~G~~v~~ 173 (174)
.| +.+++ ++|+++..
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~ 146 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYS 146 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEE
Confidence 77 76666 68887653
No 125
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.83 E-value=9.9e-08 Score=65.35 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=66.1
Q ss_pred cccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCC-CC
Q 030610 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVM-KM 159 (174)
Q Consensus 84 ~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~-~~ 159 (174)
..+++.+++++++.. ...++++|.=.++.|+-..+....|++......+++.++.+|+-++.+ .++.+|||. .-
T Consensus 2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 357788999999976 669999999999999999999999999999986669999999987753 589999995 59
Q ss_pred CEEEEeeCCEEEec
Q 030610 160 PTIQVNSNFFVLLT 173 (174)
Q Consensus 160 Pt~~~~~~G~~v~~ 173 (174)
|.+++++||+.+.+
T Consensus 80 PQ~ili~~g~~v~~ 93 (105)
T PF11009_consen 80 PQVILIKNGKVVWH 93 (105)
T ss_dssp SEEEEEETTEEEEE
T ss_pred CcEEEEECCEEEEE
Confidence 99999999999875
No 126
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.82 E-value=1.3e-08 Score=74.48 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=38.9
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEc
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDV 143 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~ 143 (174)
-.+|++||+|||+||++|+..+|.+.++.++|++ ++.++.|++
T Consensus 20 ~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 20 YRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred hCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 3588999999999999999999999999999965 799999986
No 127
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.80 E-value=3.3e-08 Score=70.63 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=56.5
Q ss_pred CCCeEEEEEe-cCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccC---------------------ChHHHHHHcCCCC
Q 030610 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA---------------------VPHKLVARAGVMK 158 (174)
Q Consensus 102 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~~l~~~~~v~~ 158 (174)
.+++++|.|| +.||+.|....+.+.++.+++.+ ++.++.|..|. .. .+++.|++..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~-~~~~~~gv~~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDG-KLAKAYGVWG 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCcc-HHHHHhCCcc
Confidence 3889999999 58999999999999999988853 67777776433 22 4778899988
Q ss_pred C---------CEEEEe-eCCEEEec
Q 030610 159 M---------PTIQVN-SNFFVLLT 173 (174)
Q Consensus 159 ~---------Pt~~~~-~~G~~v~~ 173 (174)
. |+++++ ++|+++..
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEE
Confidence 8 888888 57887753
No 128
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=3.9e-08 Score=68.13 Aligned_cols=80 Identities=16% Similarity=0.434 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEec--------CCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH------HHHH
Q 030610 87 GSESQFDRVIAEAQQLDESVIIVWMA--------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH------KLVA 152 (174)
Q Consensus 87 ~s~~~f~~~~~~~~~~~k~vlV~F~a--------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~------~l~~ 152 (174)
...++|++.+++. .+++.++|+|++ +|||.|.+..|.+.+..+....++.|+.+++.+-+. .+.+
T Consensus 10 ~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~ 88 (128)
T KOG3425|consen 10 PGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK 88 (128)
T ss_pred chHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence 3467888888765 566679999985 799999999999999888777799999999754221 2677
Q ss_pred HcCC-CCCCEEEEeeC
Q 030610 153 RAGV-MKMPTIQVNSN 167 (174)
Q Consensus 153 ~~~v-~~~Pt~~~~~~ 167 (174)
..++ .++||++-+++
T Consensus 89 d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 89 DPGILTAVPTLLRWKR 104 (128)
T ss_pred CCCceeecceeeEEcC
Confidence 7777 99999999974
No 129
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.79 E-value=2e-08 Score=71.64 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=48.2
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHH---cCCCCCCEEEEe-eCCEEEec
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR---AGVMKMPTIQVN-SNFFVLLT 173 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~---~~v~~~Pt~~~~-~~G~~v~~ 173 (174)
...+..++.|..+|||.|+...|.+.++++.. +++.+-.+.-|++.+ +.++ .|..++|+++++ ++|+++.+
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~e-l~~~~lt~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKE-LMDQYLTNGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHH-HTTTTTT-SS--SSEEEEE-TT--EEEE
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChh-HHHHHHhCCCeecCEEEEEcCCCCEeEE
Confidence 45777889999999999999999999999986 678777777777775 5544 467899999999 56787753
No 130
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.76 E-value=2.1e-07 Score=65.68 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=70.1
Q ss_pred cccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCE-E
Q 030610 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT-I 162 (174)
Q Consensus 84 ~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt-~ 162 (174)
..+++..+.++++.. ++++.|+|.|..+|-+.|..+...|.++++..+.-..++.+|+++.++ +.+.|.+. -|. +
T Consensus 3 ~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd-fn~~yel~-dP~tv 78 (133)
T PF02966_consen 3 PHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD-FNQMYELY-DPCTV 78 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC-CHHHTTS--SSEEE
T ss_pred cccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh-hhcccccC-CCeEE
Confidence 457788999999987 899999999999999999999999999999997789999999999997 99999999 775 5
Q ss_pred EEeeCCEEE
Q 030610 163 QVNSNFFVL 171 (174)
Q Consensus 163 ~~~~~G~~v 171 (174)
+||-+|+-+
T Consensus 79 mFF~rnkhm 87 (133)
T PF02966_consen 79 MFFFRNKHM 87 (133)
T ss_dssp EEEETTEEE
T ss_pred EEEecCeEE
Confidence 666555543
No 131
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.76 E-value=5.8e-08 Score=69.88 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=55.6
Q ss_pred CCCeEEEEEecCC-CHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC---------------------h-HHHHHHcCCCC
Q 030610 102 LDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---------------------P-HKLVARAGVMK 158 (174)
Q Consensus 102 ~~k~vlV~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---------------------~-~~l~~~~~v~~ 158 (174)
.+|++||+||+.| |++|+...|.|.++.+++ .++.++.|+.|.. . ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4789999999998 699999999999999998 5788888887521 1 13677888753
Q ss_pred ------CCEEEEe-eCCEEEe
Q 030610 159 ------MPTIQVN-SNFFVLL 172 (174)
Q Consensus 159 ------~Pt~~~~-~~G~~v~ 172 (174)
.|+.+++ ++|+++.
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~ 124 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIY 124 (143)
T ss_pred ccCCccceEEEEEcCCCeEEE
Confidence 6788877 5888765
No 132
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.73 E-value=6.4e-08 Score=73.22 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=55.8
Q ss_pred CCCeEEEEEe-cCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCC------------------------hHHHHHHcC
Q 030610 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV------------------------PHKLVARAG 155 (174)
Q Consensus 102 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~------------------------~~~l~~~~~ 155 (174)
.++++||+|| +.||+.|....|.|.++.+++. .++.++-|.+|.. ..++++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4789999999 9999999999999999998885 3677777765431 114778899
Q ss_pred CC------CCCEEEEe-eCCEEEe
Q 030610 156 VM------KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 156 v~------~~Pt~~~~-~~G~~v~ 172 (174)
|. ..|+.+++ ++|+++.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~ 133 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQA 133 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEE
Confidence 86 46888888 6898875
No 133
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.73 E-value=9.6e-08 Score=69.02 Aligned_cols=70 Identities=11% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCeEEEEEe-cCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccC---------------------C--hHHHHHHcCCC
Q 030610 103 DESVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA---------------------V--PHKLVARAGVM 157 (174)
Q Consensus 103 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------~--~~~l~~~~~v~ 157 (174)
+++++|.|| ++||+.|....|.+.++.+++++ ++.++.|+.|. . . .+++.|++.
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~g~~ 106 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHG-EVAKAYGVF 106 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchh-HHHHHhCCc
Confidence 378888887 99999999999999999999853 68887776432 2 2 377888887
Q ss_pred C----CC--EEEEe-eCCEEEec
Q 030610 158 K----MP--TIQVN-SNFFVLLT 173 (174)
Q Consensus 158 ~----~P--t~~~~-~~G~~v~~ 173 (174)
. +| +.+++ ++|+++..
T Consensus 107 ~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred cccCCCccceEEEECCCCEEEEE
Confidence 3 33 66666 68887753
No 134
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.4e-07 Score=68.46 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=61.3
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCC---------------hHHHHHHcCCCCCCEE
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAV---------------PHKLVARAGVMKMPTI 162 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~---------------~~~l~~~~~v~~~Pt~ 162 (174)
..++..++.|-.+.|+.|..+...+ +++.+.+.+++.++++++... .++|++.|+|+++||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 7899999999999999999999888 567777778899999987532 1259999999999999
Q ss_pred EEe-eCCEEEec
Q 030610 163 QVN-SNFFVLLT 173 (174)
Q Consensus 163 ~~~-~~G~~v~~ 173 (174)
+|| ++|+.+..
T Consensus 120 vFfdk~Gk~Il~ 131 (182)
T COG2143 120 VFFDKTGKTILE 131 (182)
T ss_pred EEEcCCCCEEEe
Confidence 999 56787653
No 135
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.70 E-value=9.2e-08 Score=71.32 Aligned_cols=71 Identities=8% Similarity=0.119 Sum_probs=55.0
Q ss_pred CCCeEEEEEe-cCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCC---------------------------hHHHHH
Q 030610 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV---------------------------PHKLVA 152 (174)
Q Consensus 102 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~---------------------------~~~l~~ 152 (174)
.++.+||+|| +.||+.|....|.|.++++++.+ ++.++.|..|.. ..++++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4789999999 89999999999999999999853 677777765431 014667
Q ss_pred HcCCC------CCCEEEEe-eCCEEEe
Q 030610 153 RAGVM------KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 153 ~~~v~------~~Pt~~~~-~~G~~v~ 172 (174)
.|++. ..|+.+++ ++|+++.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~ 134 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRH 134 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEE
Confidence 88886 56788777 5887765
No 136
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.67 E-value=1.6e-07 Score=62.01 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=50.9
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHHcC--CCCCCEEEEeeCCEEEe
Q 030610 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAG--VMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 106 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~--v~~~Pt~~~~~~G~~v~ 172 (174)
-++.|+.+||++|+.+...|+++..++ .++.+..+|++.++ +++.+..+ +..+|+++ .+|+.+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc
Confidence 367899999999999999999999876 68888899998763 23655555 48899975 4787764
No 137
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.62 E-value=3.9e-07 Score=70.49 Aligned_cols=70 Identities=20% Similarity=0.362 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC-----------ChHHHHHHcCCCCCCE
Q 030610 93 DRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-----------VPHKLVARAGVMKMPT 161 (174)
Q Consensus 93 ~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~l~~~~~v~~~Pt 161 (174)
++.+.. -.++.-|+.||.+.|+.|+.+.|.+..++++| ++.+..|++|. +.+ ++++++|..+|+
T Consensus 112 ~~~l~~--la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g-~~~~l~v~~~Pa 186 (215)
T PF13728_consen 112 DKALKQ--LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPG-QAKRLGVKVTPA 186 (215)
T ss_pred HHHHHH--HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHH-HHHHcCCCcCCE
Confidence 445544 45888999999999999999999999999999 56666666663 344 899999999999
Q ss_pred EEEeeC
Q 030610 162 IQVNSN 167 (174)
Q Consensus 162 ~~~~~~ 167 (174)
++++..
T Consensus 187 l~Lv~~ 192 (215)
T PF13728_consen 187 LFLVNP 192 (215)
T ss_pred EEEEEC
Confidence 998843
No 138
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.60 E-value=2.8e-07 Score=67.18 Aligned_cols=70 Identities=7% Similarity=0.056 Sum_probs=53.5
Q ss_pred CCCeEEEEEecC-CCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccC---------------------ChHHHHHHcCCCC
Q 030610 102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA---------------------VPHKLVARAGVMK 158 (174)
Q Consensus 102 ~~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~~l~~~~~v~~ 158 (174)
.++++||+||+. ||+.|....+.+.++.+++++ ++.++.|+.|. .. .+.+.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~-~~~~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDH-QVAEQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCc-hHHHHhCCCc
Confidence 478999999986 688899999999999998854 68888887543 22 3778888865
Q ss_pred C------------CEEEEe-eCCEEEe
Q 030610 159 M------------PTIQVN-SNFFVLL 172 (174)
Q Consensus 159 ~------------Pt~~~~-~~G~~v~ 172 (174)
. |+.+++ ++|+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~ 134 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEH 134 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEE
Confidence 4 566666 6888765
No 139
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.59 E-value=2e-07 Score=66.69 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=38.5
Q ss_pred CCCeEEEEEecCCCHh-hHhhhHHHHHHHHHhCC----CeEEEEEEccC
Q 030610 102 LDESVIIVWMASWCRK-CIYLKPKLEKLAADYHP----RLRFYNVDVNA 145 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~-C~~~~p~l~~l~~~~~~----~v~~~~vd~d~ 145 (174)
.+++++|.||++||++ |....+.+.++.+++++ ++.++.|..|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5789999999999998 99999999999999854 48888888653
No 140
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.58 E-value=4.4e-07 Score=64.70 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=55.0
Q ss_pred CCCeEEEEEe-cCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccC----------------------ChHHHHHHcCCC
Q 030610 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA----------------------VPHKLVARAGVM 157 (174)
Q Consensus 102 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~----------------------~~~~l~~~~~v~ 157 (174)
.+++++|.|| +.||+.|....|.+.++.++++ .++.++.|..+. .. .+.+.|++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~-~~~~~~g~~ 99 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDG-EFAKAYGVL 99 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCCh-HHHHHcCCc
Confidence 5899999999 7899999999999999999884 467777777542 12 477888887
Q ss_pred CCC---------EEEEe-eCCEEEec
Q 030610 158 KMP---------TIQVN-SNFFVLLT 173 (174)
Q Consensus 158 ~~P---------t~~~~-~~G~~v~~ 173 (174)
..| +++++ ++|+++..
T Consensus 100 ~~~~~~~~~~~p~~~lid~~g~i~~~ 125 (140)
T cd02971 100 IEKSAGGGLAARATFIIDPDGKIRYV 125 (140)
T ss_pred cccccccCceeEEEEEECCCCcEEEE
Confidence 766 66666 57887753
No 141
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.3e-08 Score=75.66 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=71.4
Q ss_pred cccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEE
Q 030610 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163 (174)
Q Consensus 84 ~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~ 163 (174)
..+...++| .. ..++.++++|||+||..|..+.-.++.+++.. .++.+++++.++.++ ++..+.+.+.|++.
T Consensus 4 ~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e-is~~~~v~~vp~~~ 75 (227)
T KOG0911|consen 4 QFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE-ISNLIAVEAVPYFV 75 (227)
T ss_pred eeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH-HHHHHHHhcCceee
Confidence 344556777 44 57999999999999999999999999999988 899999999999996 99999999999999
Q ss_pred EeeCCEEEe
Q 030610 164 VNSNFFVLL 172 (174)
Q Consensus 164 ~~~~G~~v~ 172 (174)
++.+|+.+.
T Consensus 76 ~~~~~~~v~ 84 (227)
T KOG0911|consen 76 FFFLGEKVD 84 (227)
T ss_pred eeecchhhh
Confidence 998887653
No 142
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.54 E-value=1.1e-06 Score=54.02 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=44.8
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEEEEeeCCEEE
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
++.|+.+||++|+.....|++ .++.+-.+|++..++ ++.+..+..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 578999999999999988854 347778888888753 3455569999999986 77764
No 143
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.52 E-value=1.1e-08 Score=78.67 Aligned_cols=75 Identities=28% Similarity=0.414 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCCCCEEEEeeC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSN 167 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~ 167 (174)
.+++..++ .+-+++.|+||||+.|+.+.|.|+.++.--.+ .+.+++||++.++. |.-+|-|.++|||.=.++
T Consensus 31 eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-LsGRF~vtaLptIYHvkD 103 (248)
T KOG0913|consen 31 EENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-LSGRFLVTALPTIYHVKD 103 (248)
T ss_pred ccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-cceeeEEEecceEEEeec
Confidence 57888888 66789999999999999999999998876544 79999999999997 999999999999999999
Q ss_pred CEE
Q 030610 168 FFV 170 (174)
Q Consensus 168 G~~ 170 (174)
|+.
T Consensus 104 GeF 106 (248)
T KOG0913|consen 104 GEF 106 (248)
T ss_pred ccc
Confidence 874
No 144
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.52 E-value=9.9e-07 Score=61.80 Aligned_cols=74 Identities=9% Similarity=0.112 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEecC----CCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH-HHHHHcCCCCCCEEEEe
Q 030610 91 QFDRVIAEAQQLDESVIIVWMAS----WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH-KLVARAGVMKMPTIQVN 165 (174)
Q Consensus 91 ~f~~~~~~~~~~~k~vlV~F~a~----wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-~l~~~~~v~~~Pt~~~~ 165 (174)
.|++++..++.+.|.++|+++++ ||..|+.... =+++.+..+.++.+...|++.... .++..+++.++|++.++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l 83 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMI 83 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEE
Confidence 46667666668999999999999 9999975441 144555556689999999986543 58999999999999988
No 145
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.51 E-value=8.2e-07 Score=67.28 Aligned_cols=70 Identities=9% Similarity=0.054 Sum_probs=56.0
Q ss_pred CCCeEEEEEe-cCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccC-------------------------ChHHHHHHc
Q 030610 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA-------------------------VPHKLVARA 154 (174)
Q Consensus 102 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~-------------------------~~~~l~~~~ 154 (174)
.++.+||.|| +.||+.|....+.|.++.+++. .++.++-|+.|. +. ++++.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~-~ia~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG-ALTRNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCch-HHHHHc
Confidence 4789999999 9999999999999999999984 367777777543 22 478899
Q ss_pred CC----CCC--CEEEEe-eCCEEEe
Q 030610 155 GV----MKM--PTIQVN-SNFFVLL 172 (174)
Q Consensus 155 ~v----~~~--Pt~~~~-~~G~~v~ 172 (174)
++ .++ |+.+++ ++|++++
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~ 133 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQA 133 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEE
Confidence 98 356 988888 5888765
No 146
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.49 E-value=2.5e-07 Score=69.78 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=35.9
Q ss_pred CCCeE-EEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEcc
Q 030610 102 LDESV-IIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (174)
Q Consensus 102 ~~k~v-lV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (174)
.++++ ++.+||+||++|+..+|.|+++.++|++ ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 47754 4566999999999999999999999965 6999999864
No 147
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.48 E-value=6.1e-07 Score=67.73 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=37.7
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEcc
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (174)
.+|++||.|||+||+.|+ ..|.|+++.++|++ ++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 589999999999999997 58999999999965 6999999885
No 148
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.44 E-value=1.8e-06 Score=54.22 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=40.9
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEEEEeeCCEEE
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
++.|+++||++|..+...+.+. ++.+..+|++.+++ ++.+..++.++|++++ +|+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~~i 61 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDEHL 61 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCEEE
Confidence 5789999999999988887762 46667788877653 1233337899999975 45544
No 149
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.42 E-value=1.3e-06 Score=67.01 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCCeEEE-EEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccC---------------------------ChHHHHH
Q 030610 102 LDESVII-VWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA---------------------------VPHKLVA 152 (174)
Q Consensus 102 ~~k~vlV-~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~~l~~ 152 (174)
.++.++| .||++||+.|....+.|.++.+++++ ++.++.|++|. +. .+++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~-~ia~ 104 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDK-ELAR 104 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCCh-HHHH
Confidence 3565554 68999999999999999999988853 57777776552 12 4778
Q ss_pred HcCCC------CCCEEEEe-eCCEEEe
Q 030610 153 RAGVM------KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 153 ~~~v~------~~Pt~~~~-~~G~~v~ 172 (174)
.|++. .+|+.+++ ++|++..
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~ 131 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRW 131 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEE
Confidence 88884 58998888 5787764
No 150
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.42 E-value=9.8e-07 Score=67.23 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=78.5
Q ss_pred CCCcccccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCC
Q 030610 77 APVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156 (174)
Q Consensus 77 ~~~~~~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v 156 (174)
+|....+.++.+.++|...+... .+.-.++|+.|-+.-.-|.++...+.-||.+| +.++|++|-.+.-. ...+|..
T Consensus 134 gp~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~g--as~~F~~ 209 (273)
T KOG3171|consen 134 GPRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNTG--ASDRFSL 209 (273)
T ss_pred CCccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeecccc--chhhhcc
Confidence 45555678888899999988542 24567889999999999999999999999999 99999999877664 5889999
Q ss_pred CCCCEEEEeeCCEEEe
Q 030610 157 MKMPTIQVNSNFFVLL 172 (174)
Q Consensus 157 ~~~Pt~~~~~~G~~v~ 172 (174)
.++||+++|++|+++.
T Consensus 210 n~lP~LliYkgGeLIg 225 (273)
T KOG3171|consen 210 NVLPTLLIYKGGELIG 225 (273)
T ss_pred cCCceEEEeeCCchhH
Confidence 9999999999999874
No 151
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.40 E-value=1.6e-06 Score=56.28 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=45.7
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH----HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH----KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
++.|+++|||+|+.+...|+++.. .+.++.++.+.+.. .+.+..++.++|++ |.+|+.+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ig 65 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFIG 65 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 578899999999999999998754 56777788776531 35566788999996 56777664
No 152
>PRK15000 peroxidase; Provisional
Probab=98.40 E-value=1.8e-06 Score=66.14 Aligned_cols=71 Identities=8% Similarity=0.101 Sum_probs=56.1
Q ss_pred CCCeEEEEEecC-CCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCCh---------------------------HHHHH
Q 030610 102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP---------------------------HKLVA 152 (174)
Q Consensus 102 ~~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~---------------------------~~l~~ 152 (174)
.++.++|.||+. ||+.|....+.|.+++++++ .++.++.|.+|... .++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 588999999994 99999999999999999985 36778878765311 04667
Q ss_pred HcCCC------CCCEEEEe-eCCEEEe
Q 030610 153 RAGVM------KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 153 ~~~v~------~~Pt~~~~-~~G~~v~ 172 (174)
.|++. ++|+.+++ ++|++..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~ 139 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRH 139 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEE
Confidence 78887 68888888 4888765
No 153
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.37 E-value=3.8e-06 Score=54.29 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=45.3
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
.+++++|+.|..+...+++++..+ + +.+-.+|....++ + .+|||.++|++++ ||+++.
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~-~-~~ygv~~vPalvI--ng~~~~ 61 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEE-I-EKYGVMSVPALVI--NGKVVF 61 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHH-H-HHTT-SSSSEEEE--TTEEEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHH-H-HHcCCCCCCEEEE--CCEEEE
Confidence 346888999999999999999998 4 6666677755554 6 9999999999944 777764
No 154
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.37 E-value=2.8e-06 Score=65.77 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=54.1
Q ss_pred CCe-EEEEEecCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHHc
Q 030610 103 DES-VIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--------------------------HKLVARA 154 (174)
Q Consensus 103 ~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~--------------------------~~l~~~~ 154 (174)
++. ||+.||++||+.|....+.|.+++.++. .++.++.|++|... .++++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 554 5789999999999999999999999985 36788878766420 1477888
Q ss_pred CCC-------CCCEEEEe-eCCEEEe
Q 030610 155 GVM-------KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 155 ~v~-------~~Pt~~~~-~~G~~v~ 172 (174)
|+. .+|+.+++ ++|++..
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~ 133 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRL 133 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEE
Confidence 873 57988888 5788764
No 155
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.30 E-value=4.5e-06 Score=52.09 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=44.1
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
++.|+++||++|+.+...|.+.. +.+..+|++.+++ .+.+..+...+|++ |.+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 56889999999999999988753 6667888887763 34555677888977 44787764
No 156
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.29 E-value=5.1e-06 Score=65.99 Aligned_cols=71 Identities=10% Similarity=0.126 Sum_probs=54.9
Q ss_pred CCCeEEEEEe-cCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCC---------------------------hHHHHH
Q 030610 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV---------------------------PHKLVA 152 (174)
Q Consensus 102 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~---------------------------~~~l~~ 152 (174)
.++.+|+.|| +.||+.|....+.|.++.+++++ ++.++.|.+|.. ..++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4667777777 99999999999999999999853 577777776541 014788
Q ss_pred HcCCC-----CCCEEEEe-eCCEEEe
Q 030610 153 RAGVM-----KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 153 ~~~v~-----~~Pt~~~~-~~G~~v~ 172 (174)
.||+. ..|+.+++ ++|+++.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~ 202 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKH 202 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEE
Confidence 99985 58998888 4888775
No 157
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.29 E-value=3.6e-06 Score=55.71 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=47.6
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHHcCC--CCCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGV--MKMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~v--~~~Pt~~~~~~G~~v~ 172 (174)
++.|+.+||++|.++...|+++..++ .++.+..+|++... .++.+..+- ..+|+++ -+|+.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~ig 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHVG 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEec
Confidence 67889999999999999999987665 46777888887543 136667774 7999984 4676653
No 158
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.27 E-value=8.6e-06 Score=64.46 Aligned_cols=69 Identities=12% Similarity=0.251 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC-----------hHHHHHHcCCCCCCE
Q 030610 93 DRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-----------PHKLVARAGVMKMPT 161 (174)
Q Consensus 93 ~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----------~~~l~~~~~v~~~Pt 161 (174)
++.++. -.++.-|+.||..-|+.|+++.|.+..++++| ++.++.|++|.. . .+++++||..+|+
T Consensus 142 ~~~i~~--la~~~gL~fFy~~~C~~C~~~apil~~fa~~y--gi~v~~VS~DG~~~p~fp~~~~d~-gqa~~l~v~~~Pa 216 (256)
T TIGR02739 142 EKAIQQ--LSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY--GISVIPISVDGTLIPGLPNSRSDS-GQAQHLGVKYFPA 216 (256)
T ss_pred HHHHHH--HHhceeEEEEECCCCchhHHHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCccCCh-HHHHhcCCccCce
Confidence 344544 34669999999999999999999999999999 366666666644 3 3889999999999
Q ss_pred EEEee
Q 030610 162 IQVNS 166 (174)
Q Consensus 162 ~~~~~ 166 (174)
+++..
T Consensus 217 l~Lv~ 221 (256)
T TIGR02739 217 LYLVN 221 (256)
T ss_pred EEEEE
Confidence 98884
No 159
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.25 E-value=7.5e-06 Score=53.23 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=45.9
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH--HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
..+.-++.|+.+||++|++....|++. ++.+-.+|+++..+ ++.+..+...+|.+++ +|+.+.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ig 69 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLIG 69 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEEc
Confidence 344557789999999999999888753 45556677776532 3556678999999953 777654
No 160
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.20 E-value=1.1e-05 Score=61.83 Aligned_cols=68 Identities=13% Similarity=0.281 Sum_probs=50.9
Q ss_pred eEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCC--------------------------hHHHHHHcCCC
Q 030610 105 SVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV--------------------------PHKLVARAGVM 157 (174)
Q Consensus 105 ~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~--------------------------~~~l~~~~~v~ 157 (174)
.+|+.||++||+.|....+.|.+++++++. ++.++-|++|.. ...+++.|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 566789999999999999999999999853 688888876641 01478889886
Q ss_pred ----CCC----EEEEe-eCCEEEe
Q 030610 158 ----KMP----TIQVN-SNFFVLL 172 (174)
Q Consensus 158 ----~~P----t~~~~-~~G~~v~ 172 (174)
+.| +.+++ ++|++..
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~ 131 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRL 131 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEE
Confidence 334 45666 6887764
No 161
>PRK13189 peroxiredoxin; Provisional
Probab=98.20 E-value=1e-05 Score=62.88 Aligned_cols=71 Identities=8% Similarity=0.158 Sum_probs=52.4
Q ss_pred CCC-eEEEEEecCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHH
Q 030610 102 LDE-SVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--------------------------HKLVAR 153 (174)
Q Consensus 102 ~~k-~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~--------------------------~~l~~~ 153 (174)
.++ .+|+.||++||+.|....+.|.+++.+++ .++.++.|.+|... .++++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 356 55668899999999999999999999985 36777777665310 146788
Q ss_pred cCCC-------CCCEEEEe-eCCEEEe
Q 030610 154 AGVM-------KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 154 ~~v~-------~~Pt~~~~-~~G~~v~ 172 (174)
||+. .+|+.+++ ++|++..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~ 140 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRA 140 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEE
Confidence 8875 46777777 5787653
No 162
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.15 E-value=1.7e-05 Score=61.41 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=51.8
Q ss_pred CCe-EEEEEecCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHHc
Q 030610 103 DES-VIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--------------------------HKLVARA 154 (174)
Q Consensus 103 ~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~--------------------------~~l~~~~ 154 (174)
+|. +|+.||++||+.|....+.|.+++.+++ .++.++.|++|... .++++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 554 4558899999999999999999999985 36788878766331 1366677
Q ss_pred CCC-------CCCEEEEe-eCCEEEe
Q 030610 155 GVM-------KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 155 ~v~-------~~Pt~~~~-~~G~~v~ 172 (174)
|+. ..|+.+++ ++|++..
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~ 138 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRL 138 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEE
Confidence 763 36777777 5787764
No 163
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.08 E-value=2.4e-05 Score=59.70 Aligned_cols=71 Identities=6% Similarity=0.100 Sum_probs=54.3
Q ss_pred CCCeEEEEEec-CCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCCh---------------------------HHHHH
Q 030610 102 LDESVIIVWMA-SWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVP---------------------------HKLVA 152 (174)
Q Consensus 102 ~~k~vlV~F~a-~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~---------------------------~~l~~ 152 (174)
.++.++|.||+ .||+.|....+.|.++++++.. ++.++.|++|... .++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 47899999995 8899999999999999999854 6888888765321 14778
Q ss_pred HcCCC------CCCEEEEe-eCCEEEe
Q 030610 153 RAGVM------KMPTIQVN-SNFFVLL 172 (174)
Q Consensus 153 ~~~v~------~~Pt~~~~-~~G~~v~ 172 (174)
.||+. .+|+.+++ ++|+++.
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEE
Confidence 88885 36787777 5787654
No 164
>PHA03050 glutaredoxin; Provisional
Probab=98.07 E-value=3e-05 Score=53.58 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC---Ch---HHHHHHcCCCCCCEEEE
Q 030610 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---VP---HKLVARAGVMKMPTIQV 164 (174)
Q Consensus 91 ~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~---~~l~~~~~v~~~Pt~~~ 164 (174)
..++.+ +.++ ++.|..+|||+|++....|+++.-++ ..+. .+|+++ .. +++.+..|...+|++
T Consensus 5 ~v~~~i----~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~-~~~~--~i~i~~~~~~~~~~~~l~~~tG~~tVP~I-- 73 (108)
T PHA03050 5 FVQQRL----ANNK--VTIFVKFTCPFCRNALDILNKFSFKR-GAYE--IVDIKEFKPENELRDYFEQITGGRTVPRI-- 73 (108)
T ss_pred HHHHHh----ccCC--EEEEECCCChHHHHHHHHHHHcCCCc-CCcE--EEECCCCCCCHHHHHHHHHHcCCCCcCEE--
Confidence 345555 4444 66889999999999999888764333 2344 455554 22 246677788999998
Q ss_pred eeCCEEE
Q 030610 165 NSNFFVL 171 (174)
Q Consensus 165 ~~~G~~v 171 (174)
|-+|+.+
T Consensus 74 fI~g~~i 80 (108)
T PHA03050 74 FFGKTSI 80 (108)
T ss_pred EECCEEE
Confidence 4456655
No 165
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.05 E-value=4.2e-05 Score=60.31 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC---------ChHHHHHHcCCCCCCEEE
Q 030610 93 DRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---------VPHKLVARAGVMKMPTIQ 163 (174)
Q Consensus 93 ~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---------~~~~l~~~~~v~~~Pt~~ 163 (174)
++.++. -.++.-|+.||.+.|+.|+.+.|.+..+++.|+=.+..+.+|-.- +. ..+++++|..+|+++
T Consensus 135 ~~~i~~--la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~-gqa~~l~v~~~PAl~ 211 (248)
T PRK13703 135 RQAIAK--LAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQ-GQAQRLGVKYFPALM 211 (248)
T ss_pred HHHHHH--HHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccCh-hHHHhcCCcccceEE
Confidence 344544 346688999999999999999999999999994344444444311 12 267899999999998
Q ss_pred Eee
Q 030610 164 VNS 166 (174)
Q Consensus 164 ~~~ 166 (174)
+..
T Consensus 212 Lv~ 214 (248)
T PRK13703 212 LVD 214 (248)
T ss_pred EEE
Confidence 884
No 166
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.03 E-value=3e-05 Score=50.09 Aligned_cols=58 Identities=19% Similarity=0.383 Sum_probs=42.1
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
++.|+.+||++|..+...|++. ++.+-.+|++.+++ ++.+..+...+|++ |-+|+.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ig 61 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVG 61 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 3578899999999999999863 35556677777653 34555688899997 44666553
No 167
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.03 E-value=4.4e-05 Score=66.87 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=55.1
Q ss_pred CCeE-EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEE
Q 030610 103 DESV-IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 103 ~k~v-lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
++++ +-.|.++||++|..+...+.+++.+. +++..--+|.+..++ ++++|+|.++|++++ ||+++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i~~~~i~~~~~~~-~~~~~~v~~vP~~~i--~~~~~ 540 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNVEAEMIDVSHFPD-LKDEYGIMSVPAIVV--DDQQV 540 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCceEEEEECcccHH-HHHhCCceecCEEEE--CCEEE
Confidence 4555 44558999999999999999999887 689988999999996 999999999999886 55544
No 168
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.01 E-value=6.5e-05 Score=47.82 Aligned_cols=58 Identities=21% Similarity=0.399 Sum_probs=41.9
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCC-CCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVM-KMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~-~~Pt~~~~~~G~~v~ 172 (174)
++.|+.+||++|..+...|++. ++.+-.+|++.+++ ++.+..+.. ++|++ |-+|+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEEe
Confidence 5688899999999999888763 46667788887654 234456766 89977 45666653
No 169
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.00 E-value=2.5e-05 Score=59.38 Aligned_cols=65 Identities=23% Similarity=0.196 Sum_probs=47.4
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEE---------------------------------------
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNV--------------------------------------- 141 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v--------------------------------------- 141 (174)
..++..++.|..+.|++|+++.+.+.+. .+++.+..+
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 4478999999999999999999998761 122222222
Q ss_pred ------EccCChHHHHHHcCCCCCCEEEEeeCCEEE
Q 030610 142 ------DVNAVPHKLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 142 ------d~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
+++++. .+++++||.++|+++ +.+|+.+
T Consensus 151 ~~~~~~~i~~~~-~l~~~~gi~gtPtii-~~~G~~~ 184 (197)
T cd03020 151 AASCDNPVAANL-ALGRQLGVNGTPTIV-LADGRVV 184 (197)
T ss_pred ccccCchHHHHH-HHHHHcCCCcccEEE-ECCCeEe
Confidence 222233 488999999999997 8888775
No 170
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.99 E-value=5.2e-05 Score=65.83 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=57.3
Q ss_pred CCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 103 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
++.-+..|.+++|++|......+.+++... +++.+-.||...+++ ++++|+|.++|++++ ||+.+.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~~-~~~~~~v~~VP~~~i--~~~~~~ 181 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQD-EVEARNIMAVPTVFL--NGEEFG 181 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCHh-HHHhcCCcccCEEEE--CCcEEE
Confidence 455588999999999999999999999876 789999999999997 999999999999965 665543
No 171
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.99 E-value=6.7e-05 Score=47.79 Aligned_cols=58 Identities=19% Similarity=0.370 Sum_probs=43.5
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
++.|+.+||+.|+++...|++. ++.+-.+|++++++ ++.+..+-..+|++ |-+|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 5678899999999999888863 46667788887653 36666678889988 45666553
No 172
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.95 E-value=0.00015 Score=49.12 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEEe---cCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEEE
Q 030610 90 SQFDRVIAEAQQLDESVIIVWM---ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQ 163 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~---a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~~ 163 (174)
+.++.++ ++++.++..=+ ++|||+|+.+...|.++ ++.+..+|++++++ ++.+..|...+|.+
T Consensus 3 ~~v~~~i----~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v- 71 (97)
T TIGR00365 3 ERIKEQI----KENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL- 71 (97)
T ss_pred HHHHHHh----ccCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE-
Confidence 3445556 45544433222 39999999999888774 34566788877664 34556677788887
Q ss_pred EeeCCEEE
Q 030610 164 VNSNFFVL 171 (174)
Q Consensus 164 ~~~~G~~v 171 (174)
|-+|+.+
T Consensus 72 -fi~g~~i 78 (97)
T TIGR00365 72 -YVKGEFV 78 (97)
T ss_pred -EECCEEE
Confidence 4566654
No 173
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.95 E-value=4.3e-05 Score=59.83 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=49.1
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEE--------------------------------------
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD-------------------------------------- 142 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd-------------------------------------- 142 (174)
..++.+++.|.-+.||+|+++.+.++++.+ .++.+..+.
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 457889999999999999999999887643 123333322
Q ss_pred ------ccCChHHHHHHcCCCCCCEEEEeeCCEEE
Q 030610 143 ------VNAVPHKLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 143 ------~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
++++. ++++++||+++||++ +.||+.+
T Consensus 182 ~~c~~~v~~~~-~la~~lgi~gTPtiv-~~~G~~~ 214 (232)
T PRK10877 182 ASCDVDIADHY-ALGVQFGVQGTPAIV-LSNGTLV 214 (232)
T ss_pred ccccchHHHhH-HHHHHcCCccccEEE-EcCCeEe
Confidence 12223 488999999999999 7788875
No 174
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.95 E-value=7.2e-05 Score=47.48 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=42.2
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH--HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
++.|..+||+.|.+....|++. ++.+..+|++++.. .+.+..+...+|.+ |-+|+.+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig 62 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe
Confidence 5788899999999998888752 45566777776542 34455688999997 55676653
No 175
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.92 E-value=3.7e-05 Score=52.28 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=38.5
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH------HHHHHcCCCCCCEEEEeeCCEEE
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH------KLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~------~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
++.|..+|||+|+++...|.++. +.+..+|+|..++ ++.+..+...+|.+ |-+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 56788999999999998777642 3334566655432 13344467899997 5566655
No 176
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.3e-05 Score=67.86 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCChH------HHHHHcC-CCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPH------KLVARAG-VMK 158 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~------~l~~~~~-v~~ 158 (174)
.+.|.++- .++||++|....+||.+|+.|..+= +++|+.++.+++-+|||-++-|+ .+|+... --+
T Consensus 33 ~eAf~~A~----~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GG 108 (667)
T COG1331 33 EEAFAKAK----EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGG 108 (667)
T ss_pred HHHHHHHH----HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCC
Confidence 58888888 7899999999999999999887665 67888888899999999998886 2333333 457
Q ss_pred CCEEEEe-eCCEEEe
Q 030610 159 MPTIQVN-SNFFVLL 172 (174)
Q Consensus 159 ~Pt~~~~-~~G~~v~ 172 (174)
.|-.+|. .+|+...
T Consensus 109 WPLtVfLTPd~kPFf 123 (667)
T COG1331 109 WPLTVFLTPDGKPFF 123 (667)
T ss_pred CceeEEECCCCceee
Confidence 9976666 8888764
No 177
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.87 E-value=6.9e-05 Score=47.68 Aligned_cols=50 Identities=22% Similarity=0.492 Sum_probs=38.4
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHH---HHcCCCCCCEEEE
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV---ARAGVMKMPTIQV 164 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~---~~~~v~~~Pt~~~ 164 (174)
..|+.+||++|+.....|++ .++.+-.+|++++++ .. +..|...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~-~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPE-AIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHH-HHHHHHHcCCcccCEEEE
Confidence 56889999999999998875 356667788888764 33 3448889999754
No 178
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.84 E-value=5.3e-05 Score=52.14 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecC--CCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMAS--WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~--wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
.++++..+ ..+...++.|... -++-|....-.+.+|.+.+.+.+..+.++-+... +|..+|++..+|+++|++
T Consensus 16 ~~~ld~~l----~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~-~L~~r~gv~~~PaLvf~R 90 (107)
T PF07449_consen 16 ADTLDAFL----AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAER-ALAARFGVRRWPALVFFR 90 (107)
T ss_dssp CCCHHHHH----HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHH-HHHHHHT-TSSSEEEEEE
T ss_pred hhhHHHHH----hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHH-HHHHHhCCccCCeEEEEE
Confidence 46788888 5566666666543 2344455555778888889788888888855555 599999999999999999
Q ss_pred CCEEEe
Q 030610 167 NFFVLL 172 (174)
Q Consensus 167 ~G~~v~ 172 (174)
+|+.+.
T Consensus 91 ~g~~lG 96 (107)
T PF07449_consen 91 DGRYLG 96 (107)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 999875
No 179
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.83 E-value=0.00012 Score=48.71 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=38.5
Q ss_pred CCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 113 SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 113 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
+||++|+.+...|++.. +.+..+|++.+++ ++.+..+...+|.+ |.+|+.+.
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~iG 75 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELVG 75 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEEe
Confidence 79999999998887753 5566777777653 35566788899997 45777654
No 180
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.82 E-value=0.00014 Score=47.59 Aligned_cols=52 Identities=21% Similarity=0.465 Sum_probs=39.9
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH--HHHHHcCCCCCCEEEE
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMKMPTIQV 164 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~l~~~~~v~~~Pt~~~ 164 (174)
+..|..+||++|+.+...|++ .++.|-.+|++..++ +..+..+...+|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 567889999999999888865 357778889988764 1234457789999954
No 181
>PRK10638 glutaredoxin 3; Provisional
Probab=97.78 E-value=0.00021 Score=46.68 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=42.6
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
++.|..+||++|+.+.-.|++. ++.+..+|++.+++ ++.+..+...+|++ +.+|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 5678889999999999888864 34556678877653 35566788899987 44677664
No 182
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.78 E-value=0.00049 Score=50.97 Aligned_cols=76 Identities=17% Similarity=0.347 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCCe-EEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCC--CCCEEEEe
Q 030610 89 ESQFDRVIAEAQQLDES-VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--KMPTIQVN 165 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~--~~Pt~~~~ 165 (174)
.+++..+. ..+.+ +++.|...-......+...+..+++.+++++.|+.+|++..+. +++.+++. .+|+++++
T Consensus 84 ~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~-~~~~~~i~~~~~P~~vi~ 158 (184)
T PF13848_consen 84 PENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR-LLKYFGIDEDDLPALVIF 158 (184)
T ss_dssp TTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH-HHHHTTTTTSSSSEEEEE
T ss_pred hhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH-HHHHcCCCCccCCEEEEE
Confidence 46888888 67765 8888887778888999999999999998899999999998886 99999998 89999999
Q ss_pred e--CCE
Q 030610 166 S--NFF 169 (174)
Q Consensus 166 ~--~G~ 169 (174)
. +++
T Consensus 159 ~~~~~~ 164 (184)
T PF13848_consen 159 DSNKGK 164 (184)
T ss_dssp ETTTSE
T ss_pred ECCCCc
Confidence 6 444
No 183
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.73 E-value=0.00018 Score=47.14 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=45.6
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEc--cCC-----------------------------hHHHHHHcC
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV--NAV-----------------------------PHKLVARAG 155 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~--d~~-----------------------------~~~l~~~~~ 155 (174)
++.|+.++|++|..+.+.++++.....+++.+....+ ... ...++..+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999866667776666553 221 012567899
Q ss_pred CCCCCEEEEee
Q 030610 156 VMKMPTIQVNS 166 (174)
Q Consensus 156 v~~~Pt~~~~~ 166 (174)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998865
No 184
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.69 E-value=0.00017 Score=53.33 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=32.8
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEE
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFY 139 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~ 139 (174)
.+++.|+.|+...||+|+.+.+.+.++..++.+++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 57899999999999999999999999988875555554
No 185
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.67 E-value=0.00036 Score=60.63 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=57.2
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
.++.-+-.|..+.|++|......+.+++... +++..-.+|...+++ ++++|+|.++|++++ ||+.+.
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~~-~~~~~~v~~VP~~~i--~~~~~~ 182 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQD-EVEALGIQGVPAVFL--NGEEFH 182 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCHH-HHHhcCCcccCEEEE--CCcEEE
Confidence 3455688899999999999999999998887 789888899999997 999999999999976 555443
No 186
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.49 E-value=0.0012 Score=54.14 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHH------HHHHHHHh--CCCeEEEEEEccCChHHHHHHcCCCCCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK------LEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMKMP 160 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~------l~~l~~~~--~~~v~~~~vd~d~~~~~l~~~~~v~~~P 160 (174)
..+|++++ +..+..+|+|+.+-- .-+..... +-+|+++. ..++.|+.||..+... +++++|+...+
T Consensus 41 eKNfk~~l----Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k-lAKKLgv~E~~ 114 (383)
T PF01216_consen 41 EKNFKRAL----KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK-LAKKLGVEEEG 114 (383)
T ss_dssp TTTHHHHH----HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH-HHHHHT--STT
T ss_pred hhHHHHHH----HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH-HHHhcCccccC
Confidence 58999999 668899999998863 33333222 33455444 3479999999999985 99999999999
Q ss_pred EEEEeeCCEEEe
Q 030610 161 TIQVNSNFFVLL 172 (174)
Q Consensus 161 t~~~~~~G~~v~ 172 (174)
++.+|++|+++.
T Consensus 115 SiyVfkd~~~IE 126 (383)
T PF01216_consen 115 SIYVFKDGEVIE 126 (383)
T ss_dssp EEEEEETTEEEE
T ss_pred cEEEEECCcEEE
Confidence 999999999885
No 187
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.47 E-value=0.00052 Score=52.05 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=65.3
Q ss_pred ccccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCC
Q 030610 81 IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMP 160 (174)
Q Consensus 81 ~~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~P 160 (174)
.++.+|.. .+|.+-+..| ..+-.|+|..|...-+-|.-+...|+.++..| +.++|++|-.+..- ..|--..+|
T Consensus 91 G~V~~ISg-~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~cI----pNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPISG-PDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATTCI----PNYPESNLP 163 (240)
T ss_pred cceeeccc-hHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEeccccccc----CCCcccCCC
Confidence 34566665 4555444444 67888999999999999999999999999999 89999998765542 234446789
Q ss_pred EEEEeeCCEEE
Q 030610 161 TIQVNSNFFVL 171 (174)
Q Consensus 161 t~~~~~~G~~v 171 (174)
|+++|..|.+.
T Consensus 164 Tl~VY~~G~lk 174 (240)
T KOG3170|consen 164 TLLVYHHGALK 174 (240)
T ss_pred eEEEeecchHH
Confidence 99999988754
No 188
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00057 Score=44.58 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=37.7
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh--H--HHHHHc-CCCCCCEEEE
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP--H--KLVARA-GVMKMPTIQV 164 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~--~l~~~~-~v~~~Pt~~~ 164 (174)
++.|..+|||+|++....|.+ .++.+..++++... + +..++. |.+.+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567889999999999988884 35555666766655 2 234454 7899998765
No 189
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.44 E-value=0.0018 Score=43.11 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=56.4
Q ss_pred ccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEE
Q 030610 85 PIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 85 ~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~ 164 (174)
.+++.++++.++ ..++.++|-|+..+|+ .+...+.++|..+++.+.|+.+. +.+ +++.+++.. |++++
T Consensus 3 ~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~-~~~~~~~~~-~~i~l 70 (97)
T cd02981 3 ELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKE-VAKKLKVKP-GSVVL 70 (97)
T ss_pred ecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHH-HHHHcCCCC-CceEE
Confidence 456678888888 7899999999999988 56778889999997788887665 343 777787754 88888
Q ss_pred eeCC
Q 030610 165 NSNF 168 (174)
Q Consensus 165 ~~~G 168 (174)
|+.+
T Consensus 71 ~~~~ 74 (97)
T cd02981 71 FKPF 74 (97)
T ss_pred eCCc
Confidence 8653
No 190
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.39 E-value=0.00056 Score=52.48 Aligned_cols=40 Identities=8% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEE
Q 030610 103 DESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVD 142 (174)
Q Consensus 103 ~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd 142 (174)
+++.||.|+.-.||+|..+.+.+ +.+.+.+.+++.+.++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 46779999999999999999876 77788876666555443
No 191
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.36 E-value=0.00058 Score=48.89 Aligned_cols=41 Identities=27% Similarity=0.449 Sum_probs=33.4
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEE
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd 142 (174)
...+.+++.|+.++||+|+.+.|.+.++...+ +++.+...+
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~ 43 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKE 43 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEe
Confidence 45789999999999999999999999988777 455444443
No 192
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.28 E-value=0.00097 Score=43.47 Aligned_cols=55 Identities=24% Similarity=0.567 Sum_probs=45.8
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVN 165 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~ 165 (174)
++.|..+.|+-|..+...+.++.... .+.+-.||++++++ +..+|+. .+|.+.+-
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~-l~~~Y~~-~IPVl~~~ 56 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE-LFEKYGY-RIPVLHID 56 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH-HHHHSCT-STSEEEET
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH-HHHHhcC-CCCEEEEc
Confidence 67899999999999999998865444 59999999999986 9999996 79986654
No 193
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.23 E-value=0.0071 Score=43.08 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=61.4
Q ss_pred cccccCCHHHHHHHHHHHhcCCCeEEEEEecC--CC-Hhh-HhhhHHHHHHHHHhCCC-eEEEEEEccCChHHHHHHcCC
Q 030610 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMAS--WC-RKC-IYLKPKLEKLAADYHPR-LRFYNVDVNAVPHKLVARAGV 156 (174)
Q Consensus 82 ~~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~--wC-~~C-~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~l~~~~~v 156 (174)
++.++++.+.+++.. .+++.-+|-|.-. -| ..+ ......+.++|+.|+++ +.|+.+|.+++.. +.+.||+
T Consensus 3 ~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~-~~~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD-LEEALNI 77 (130)
T ss_pred ceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH-HHHHcCC
Confidence 456677777888877 4566666666421 12 223 36678899999999998 9999999999986 9999999
Q ss_pred C--CCCEEEEeeC
Q 030610 157 M--KMPTIQVNSN 167 (174)
Q Consensus 157 ~--~~Pt~~~~~~ 167 (174)
. ++|+++++..
T Consensus 78 ~~~~~P~v~i~~~ 90 (130)
T cd02983 78 GGFGYPAMVAINF 90 (130)
T ss_pred CccCCCEEEEEec
Confidence 5 4999999854
No 194
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.22 E-value=0.0015 Score=51.69 Aligned_cols=39 Identities=8% Similarity=0.226 Sum_probs=29.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEE
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNV 141 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 141 (174)
...+.+++.|.-+-||+|+++.+.+.++.+. +++.+..+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~i 153 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHI 153 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEE
Confidence 4577889999999999999999988776543 33444433
No 195
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.003 Score=43.32 Aligned_cols=70 Identities=13% Similarity=0.231 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHH----cCCCCCCEEEEe
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR----AGVMKMPTIQVN 165 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~----~~v~~~Pt~~~~ 165 (174)
+.++.++ .+++ +|.|..+||+.|+++...|.+ ++....++.+|-+.+..++.+. -+-+.+|.++
T Consensus 5 ~~v~~~i----~~~~--VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF-- 72 (104)
T KOG1752|consen 5 AKVRKMI----SENP--VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF-- 72 (104)
T ss_pred HHHHHHh----hcCC--EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE--
Confidence 3456666 3344 346889999999997777666 5567888888887766434433 3456777654
Q ss_pred eCCEEE
Q 030610 166 SNFFVL 171 (174)
Q Consensus 166 ~~G~~v 171 (174)
-+|+.+
T Consensus 73 I~Gk~i 78 (104)
T KOG1752|consen 73 IGGKFI 78 (104)
T ss_pred ECCEEE
Confidence 456554
No 196
>PTZ00062 glutaredoxin; Provisional
Probab=97.06 E-value=0.0049 Score=47.34 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEE---ecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEEE
Q 030610 90 SQFDRVIAEAQQLDESVIIVW---MASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTIQ 163 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F---~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~~ 163 (174)
+-+++++ ++++.+|..= ++|||++|+++...|.+. ++.+..+|+++.++ .+.+..+...+|.++
T Consensus 104 ~~v~~li----~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 104 EKIERLI----RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred HHHHHHH----hcCCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE
Confidence 3455556 5555555544 347999999988888753 45667788887764 233444555666654
Q ss_pred EeeCCEEEe
Q 030610 164 VNSNFFVLL 172 (174)
Q Consensus 164 ~~~~G~~v~ 172 (174)
-+|+.+.
T Consensus 174 --I~G~~IG 180 (204)
T PTZ00062 174 --VNGELIG 180 (204)
T ss_pred --ECCEEEc
Confidence 5676653
No 197
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.05 E-value=0.003 Score=53.48 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=41.5
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH--HHHHH---------cCCCCCCEEEEeeCCEEE
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVAR---------AGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~l~~~---------~~v~~~Pt~~~~~~G~~v 171 (174)
|+.|..+|||+|+++...|.+. ++.+-.+|+++.+. ++.++ .|...+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 6789999999999998888773 46667788887653 12222 36788999855 66654
No 198
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.97 E-value=0.0065 Score=53.35 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEee-C
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS-N 167 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~-~ 167 (174)
.+++.+.+.+ -.+.+.++.|+.+.|..|..+...+++++..- +++.+...|..++.+ ++++|++...|++.+++ +
T Consensus 354 ~~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~~~-~~~~~~v~~~P~~~i~~~~ 429 (555)
T TIGR03143 354 RQQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFASLS-EKLNSEAVNRGEEPE-SETLPKITKLPTVALLDDD 429 (555)
T ss_pred HHHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHhcC-CcEEEEEeccccchh-hHhhcCCCcCCEEEEEeCC
Confidence 3456777754 45666788999999999999999999998554 889988889888775 89999999999999994 5
Q ss_pred CE
Q 030610 168 FF 169 (174)
Q Consensus 168 G~ 169 (174)
|+
T Consensus 430 ~~ 431 (555)
T TIGR03143 430 GN 431 (555)
T ss_pred Cc
Confidence 53
No 199
>PRK10824 glutaredoxin-4; Provisional
Probab=96.97 E-value=0.0038 Score=43.62 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEEec----CCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCCCCCCEE
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMA----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMKMPTI 162 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v~~~Pt~ 162 (174)
+..++++ +++++||. --. ||||+|+++...|.++. +.+..+|++.+++ .+.+.-|-..+|.
T Consensus 6 ~~v~~~I----~~~~Vvvf-~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQ- 73 (115)
T PRK10824 6 EKIQRQI----AENPILLY-MKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQ- 73 (115)
T ss_pred HHHHHHH----hcCCEEEE-ECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCe-
Confidence 4456666 45554443 332 69999999998887753 3344567776654 2334445555665
Q ss_pred EEeeCCEEE
Q 030610 163 QVNSNFFVL 171 (174)
Q Consensus 163 ~~~~~G~~v 171 (174)
+|-+|+.|
T Consensus 74 -IFI~G~~I 81 (115)
T PRK10824 74 -LWVDGELV 81 (115)
T ss_pred -EEECCEEE
Confidence 45566655
No 200
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.82 E-value=0.012 Score=40.79 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHH---hCCCeEEEEEEccCChHHHHHHcCCCC--CCEEE
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAAD---YHPRLRFYNVDVNAVPHKLVARAGVMK--MPTIQ 163 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~---~~~~v~~~~vd~d~~~~~l~~~~~v~~--~Pt~~ 163 (174)
.++.+.+. ..+.+..+.|+ .-..-..+...+.++|++ +++++.|+.+|.+.... ..+.||+.. +|.+.
T Consensus 6 ~e~~~~~~----~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~-~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 6 FENAEELT----EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH-PLLHLGKTPADLPVIA 78 (111)
T ss_pred cccHHHHh----cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh-HHHHcCCCHhHCCEEE
Confidence 35666666 66777776777 222346788999999999 99999999999999875 899999987 99999
Q ss_pred EeeC
Q 030610 164 VNSN 167 (174)
Q Consensus 164 ~~~~ 167 (174)
+...
T Consensus 79 i~~~ 82 (111)
T cd03072 79 IDSF 82 (111)
T ss_pred EEcc
Confidence 8853
No 201
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.014 Score=43.00 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=52.7
Q ss_pred cCCCeEEEEEe-cCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccC---------------------ChHHHHHHcCCC
Q 030610 101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA---------------------VPHKLVARAGVM 157 (174)
Q Consensus 101 ~~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~~l~~~~~v~ 157 (174)
-.++.||++|| ..|++.|-...-.+.+...+++. ++.++-|..|. .. ++++.|||-
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~-~v~~~ygv~ 106 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDG-EVAEAYGVW 106 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcH-HHHHHhCcc
Confidence 45889999999 78999999999999998888854 67777787543 33 478888874
Q ss_pred C------------CCEEEEe-eCCEEEe
Q 030610 158 K------------MPTIQVN-SNFFVLL 172 (174)
Q Consensus 158 ~------------~Pt~~~~-~~G~~v~ 172 (174)
. .++.+++ ++|++..
T Consensus 107 ~~k~~~gk~~~~~~R~TfvId~dG~I~~ 134 (157)
T COG1225 107 GEKKMYGKEYMGIERSTFVIDPDGKIRY 134 (157)
T ss_pred cccccCccccccccceEEEECCCCeEEE
Confidence 3 3444445 6787654
No 202
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.73 E-value=0.016 Score=39.31 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=59.3
Q ss_pred ccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh-HHHHHHcCCC----CC
Q 030610 85 PIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-HKLVARAGVM----KM 159 (174)
Q Consensus 85 ~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~l~~~~~v~----~~ 159 (174)
.|.+..+|..++ .....|+|.|..+--..-.. ...+.++|+...+.-.++.|||.... ..||+++.|. --
T Consensus 5 ~i~d~KdfKKLL----RTr~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~ 79 (112)
T cd03067 5 DISDHKDFKKLL----RTRNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK 79 (112)
T ss_pred cccchHHHHHHH----hhcCcEEEEEecchhhHHHH-HHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence 355578999999 66888888887655444333 44778889998888999999998733 2699999998 55
Q ss_pred CE-EEEeeCCE
Q 030610 160 PT-IQVNSNFF 169 (174)
Q Consensus 160 Pt-~~~~~~G~ 169 (174)
|. +.=|++|.
T Consensus 80 ~~~LkHYKdG~ 90 (112)
T cd03067 80 PVELKHYKDGD 90 (112)
T ss_pred cchhhcccCCC
Confidence 54 45568885
No 203
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0092 Score=48.24 Aligned_cols=75 Identities=19% Similarity=0.454 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEec----CCCHhhHhhhHHHHHHHHHhC------C--CeEEEEEEccCChHHHHHHcCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMA----SWCRKCIYLKPKLEKLAADYH------P--RLRFYNVDVNAVPHKLVARAGV 156 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a----~wC~~C~~~~p~l~~l~~~~~------~--~v~~~~vd~d~~~~~l~~~~~v 156 (174)
++.|..++.. ...+-.++|.|.| ..|.-|+.+..++.-++..+. + ++=|..||.|+.++ +.+++++
T Consensus 47 ~d~~~~~v~~-~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~-~Fq~l~l 124 (331)
T KOG2603|consen 47 DDKFSKFVRP-PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ-VFQQLNL 124 (331)
T ss_pred CcchhhhccC-CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH-HHHHhcc
Confidence 4788888863 2556678888887 479999999999999988752 1 57789999999996 9999999
Q ss_pred CCCCEEEEe
Q 030610 157 MKMPTIQVN 165 (174)
Q Consensus 157 ~~~Pt~~~~ 165 (174)
..+|++..|
T Consensus 125 n~~P~l~~f 133 (331)
T KOG2603|consen 125 NNVPHLVLF 133 (331)
T ss_pred cCCCeEEEe
Confidence 999999999
No 204
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=96.55 E-value=0.02 Score=35.89 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=41.4
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEecC
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLTS 174 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~~ 174 (174)
+.|+.+||++|++..-.+++.. -.+.+..+|....+.++.+......+|++.. .+|..+..|
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g----l~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l~eS 63 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG----ITVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVIEES 63 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC----CCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEEecH
Confidence 4577899999999876665532 2466667776543334666667788999953 457766543
No 205
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.51 E-value=0.02 Score=39.60 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=43.3
Q ss_pred HhhHhhhHHHHHHHHHhC-CCeEEEEEEccCChHHHHHHcCCCC----CCEEEEee
Q 030610 116 RKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMK----MPTIQVNS 166 (174)
Q Consensus 116 ~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~l~~~~~v~~----~Pt~~~~~ 166 (174)
..-..+...+.++|+.++ +++.|+.+|.++... ..+.||+.. +|++.++.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~-~l~~fgl~~~~~~~P~~~i~~ 85 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH-ELEEFGLDFSGGEKPVVAIRT 85 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH-HHHHcCCCcccCCCCEEEEEe
Confidence 445678899999999999 699999999998875 889999974 99999985
No 206
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.50 E-value=0.013 Score=42.44 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=37.5
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHh--CCCeEEEEEEc
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDV 143 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~ 143 (174)
...+.+|+.|+..-|++|..+.+.+.++.+++ .+++.|...+.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 45788999999999999999999999999998 67888888875
No 207
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.14 E-value=0.095 Score=36.90 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHH-HHh--CCCeEEEEEEccCCh----HHHHHHcCC--CCCC
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA-ADY--HPRLRFYNVDVNAVP----HKLVARAGV--MKMP 160 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~-~~~--~~~v~~~~vd~d~~~----~~l~~~~~v--~~~P 160 (174)
-+|++++ ...+.+||.|=... |-=.-.-.+.+++ +.. .+++-++.|-+.+.. .+|+++|++ ..+|
T Consensus 12 ~tFdKvi----~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP 85 (126)
T PF07912_consen 12 LTFDKVI----PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP 85 (126)
T ss_dssp THHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred eehhhee----ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence 6899999 78999999995443 2233345677777 433 357999999875432 269999999 6699
Q ss_pred EEEEeeCC
Q 030610 161 TIQVNSNF 168 (174)
Q Consensus 161 t~~~~~~G 168 (174)
.+++|.+|
T Consensus 86 v~~LF~~~ 93 (126)
T PF07912_consen 86 VIYLFVGD 93 (126)
T ss_dssp EEEEEESS
T ss_pred EEEEecCC
Confidence 99999744
No 208
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.84 E-value=0.031 Score=40.87 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCeEEEEEecCCCHhhHhh-hHHHHHHHHHhC-CCe-EEEEEEcc
Q 030610 102 LDESVIIVWMASWCRKCIYL-KPKLEKLAADYH-PRL-RFYNVDVN 144 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~-~p~l~~l~~~~~-~~v-~~~~vd~d 144 (174)
.+..||+.|.+.||+.|-.. .+.+.+...++. .++ .++-|..|
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 34455555568999999998 999998888874 245 46666643
No 209
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.83 E-value=0.046 Score=39.83 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=39.1
Q ss_pred EEEEecC------CCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHHcCC----CCCCEEEEeeCCEEE
Q 030610 107 IIVWMAS------WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGV----MKMPTIQVNSNFFVL 171 (174)
Q Consensus 107 lV~F~a~------wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~l~~~~~v----~~~Pt~~~~~~G~~v 171 (174)
||.|+++ ||++|+.+...|+.+ ++.+-.+|++.+++ +|.+.++- ..+|.++ -+|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEEE
Confidence 3455566 999999999888764 46778899987753 45555555 5677654 456554
No 210
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.24 E-value=0.1 Score=33.30 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=48.0
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHHcCCCCCCEEEE
Q 030610 106 VIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 106 vlV~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~ 164 (174)
++..|-+...+..+.....+.++.+++ ++.+.+=-||+.++|+ ++..++|-++||++-
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ-LAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh-HHhhCCEEEechhhh
Confidence 455566666688888888888888877 5578888999999997 999999999999753
No 211
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=95.06 E-value=0.15 Score=32.22 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=42.0
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEecC
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLTS 174 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~~ 174 (174)
.++.++|++|+++.=.++... =.+.+..++..+....+.+...-..+|++. .+|..+..|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~----i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~dS 60 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKG----IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLTDS 60 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHT----EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEESH
T ss_pred CCCcCCChHHHHHHHHHHHcC----CeEEEeccCcccchhHHHhhcccccceEEE--ECCEEEeCH
Confidence 367899999999875555432 256666777665544477777778899997 568877653
No 212
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=94.74 E-value=0.21 Score=30.93 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=38.6
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
..|+.++|+.|++..-.+++..- .+....+|......++.+......+|++. .+|..+..
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~e 61 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVLYE 61 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEEEc
Confidence 46788999999998877655432 34555556544333366666677899774 45665543
No 213
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=94.63 E-value=0.087 Score=32.64 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=38.8
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---VPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
..|+.+||++|+++.-.+.... -.+....++... ...++.+......+|++.. .+|..+..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~----l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~l~e 65 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKG----IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTVITE 65 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcC----CCceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCEEec
Confidence 3577899999999887776642 244555566432 1123666666778999964 35655543
No 214
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.18 Score=34.18 Aligned_cols=73 Identities=18% Similarity=0.100 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEEe---cCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCC-CCCCEE-EE
Q 030610 90 SQFDRVIAEAQQLDESVIIVWM---ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV-MKMPTI-QV 164 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~---a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v-~~~Pt~-~~ 164 (174)
+-+++.+ ++++.+|..=. .|-|+...++...|..+ +.+.|..+|+=.+++ +.+.+.- ...||+ .+
T Consensus 6 ~~I~~~i----~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~-----g~v~~~~vnVL~d~e-iR~~lk~~s~WPT~PQL 75 (105)
T COG0278 6 DRIQKQI----KENPVVLFMKGTPEFPQCGFSAQAVQILSAC-----GVVDFAYVDVLQDPE-IRQGLKEYSNWPTFPQL 75 (105)
T ss_pred HHHHHHh----hcCceEEEecCCCCCCCCCccHHHHHHHHHc-----CCcceeEEeeccCHH-HHhccHhhcCCCCCcee
Confidence 4456666 55665555444 46777777766555543 228889999988886 8777654 568987 78
Q ss_pred eeCCEEEe
Q 030610 165 NSNFFVLL 172 (174)
Q Consensus 165 ~~~G~~v~ 172 (174)
|-+|+.+.
T Consensus 76 yi~GEfvG 83 (105)
T COG0278 76 YVNGEFVG 83 (105)
T ss_pred eECCEEec
Confidence 88998764
No 215
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=94.18 E-value=0.057 Score=42.29 Aligned_cols=61 Identities=10% Similarity=0.207 Sum_probs=44.8
Q ss_pred CCcccccccCCH--HHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEE
Q 030610 78 PVSIPLTPIGSE--SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142 (174)
Q Consensus 78 ~~~~~~~~i~s~--~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd 142 (174)
.....+..++.. ..+-+.. ..++++|++|.+-.||+-..-...+++++++|.+.+.|+.|-
T Consensus 79 APns~vv~l~g~~~~~ildf~----~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY 141 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFA----KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY 141 (237)
T ss_pred CCCCceEeeCCCcceeHHHhc----cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 333444444422 3455666 789999999999999999999999999999997644454443
No 216
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.00 E-value=0.47 Score=30.07 Aligned_cols=60 Identities=10% Similarity=0.159 Sum_probs=36.3
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
..++.++|++|++..-.|++..- .+.+ ++++... .++.+.-+...+|++..-.+|..+..
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~gi----~y~~--~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~e 65 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELEL----DVIL--YPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFE 65 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcCC----cEEE--EECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEc
Confidence 46677899999988766665432 3333 4443321 13444446678999864445666654
No 217
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.92 E-value=0.26 Score=33.57 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=52.1
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHHcCCCCCCEEEE
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~ 164 (174)
....++=.|.|.--+..+.....+.++.+.+ .+.+.+=-||+.++|+ +++.++|-++||++=
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe-lAE~~~IvATPTLIK 66 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ-LAEEDKILATPTLAK 66 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCeEEecHHhh
Confidence 4567777788888999999888999887765 4568888899999996 999999999999753
No 218
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=93.85 E-value=0.29 Score=32.39 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=49.8
Q ss_pred CeEEEEEecCCCHhhHhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHHcCCCCCCEEEE
Q 030610 104 ESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 104 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~ 164 (174)
..++=.|.|.--+..+.....+.++.+++ .+.+.+=-||+.++|+ +++.++|-++||++=
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~-lAE~~~IvATPtLIK 63 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ-LAEEDKILATPTLSK 63 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCEEEecHHhh
Confidence 45666677888889998888998887765 4568888899999996 999999999999753
No 219
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=93.69 E-value=0.41 Score=28.51 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=37.9
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH-HHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH-KLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.|+.++|+.|++..-.++... -.+....++.+.... ++.+......+|++.. +|..+..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~~e 62 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKG----LPYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVLTE 62 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcC----CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEEEc
Confidence 577899999998887766542 244555555443322 1555667788998764 4666654
No 220
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.66 E-value=0.15 Score=35.49 Aligned_cols=36 Identities=17% Similarity=0.445 Sum_probs=28.4
Q ss_pred CeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEc
Q 030610 104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143 (174)
Q Consensus 104 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 143 (174)
|.++|.|+.|.|+-|+.....+.++.. ++.+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~led----eY~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELED----EYDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhc----cccEEEEEe
Confidence 568999999999999999988866654 455566664
No 221
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=93.46 E-value=0.33 Score=30.07 Aligned_cols=59 Identities=7% Similarity=0.136 Sum_probs=34.8
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.++.++|+.|++..-.|.... -.+....++.+.... ..+..+-..+|++. ..+|..+..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~g----l~~~~~~~~~~~~~~-~~~~~~~~~vP~L~-~~~~~~l~e 61 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKN----IPVEQIILQNDDEAT-PIRMIGAKQVPILE-KDDGSFMAE 61 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcC----CCeEEEECCCCchHH-HHHhcCCCccCEEE-eCCCeEeeh
Confidence 567889999998876665532 234444455433322 33444556789874 344766543
No 222
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=93.31 E-value=0.13 Score=34.88 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=24.2
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (174)
..|+.++|+.|+.....|++. ++.+-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 578899999999998877763 444556666553
No 223
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=93.08 E-value=0.95 Score=28.38 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=36.2
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEee--CCEEEec
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS--NFFVLLT 173 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~--~G~~v~~ 173 (174)
+..|+.++|+.|++..-.|.+..- .+.+..+|....++ + +.-+...+|++..-. +|+.+..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi----~y~~~~~~~~~~~~-~-~~~~~~~vP~l~~~~~~~~~~l~e 64 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI----PYEVVEVNPVSRKE-I-KWSSYKKVPILRVESGGDGQQLVD 64 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC----ceEEEECCchhHHH-H-HHhCCCccCEEEECCCCCccEEEc
Confidence 346788999999998866665422 33333333322222 4 334567899987542 4666654
No 224
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=93.00 E-value=0.84 Score=28.26 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=38.9
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
..|+.++|+.|++..-.+++.. -.+....+|..+. ..++.+......+|++.. +|..+..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~g----i~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~e 64 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALG----LELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVLWE 64 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcC----CCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEEEc
Confidence 3678999999998776666542 3456666665332 123666666778999953 5666554
No 225
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.83 E-value=0.21 Score=34.35 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=25.4
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 147 (174)
..|+.++|+.|++....|++ .++.|-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH------cCCceEEecccCCc
Confidence 46889999999999988876 24556667766543
No 226
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=92.51 E-value=1.8 Score=28.99 Aligned_cols=73 Identities=18% Similarity=0.283 Sum_probs=52.1
Q ss_pred ccccCCHHHHHHHHHHHhc-CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCE
Q 030610 83 LTPIGSESQFDRVIAEAQQ-LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (174)
Q Consensus 83 ~~~i~s~~~f~~~~~~~~~-~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt 161 (174)
+..+.+.++++.++ . .+..++|-|+..--. .....+.++|..+++++.|+... +.+ +.+.+++. .|+
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~-~~~~~~~~-~~~ 69 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSK-VAKKLGLK-MNE 69 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHH-HHHHcCCC-CCc
Confidence 34567788999999 6 677777777765444 45667888999998888885432 333 67777765 688
Q ss_pred EEEeeC
Q 030610 162 IQVNSN 167 (174)
Q Consensus 162 ~~~~~~ 167 (174)
++++++
T Consensus 70 i~l~~~ 75 (102)
T cd03066 70 VDFYEP 75 (102)
T ss_pred EEEeCC
Confidence 888854
No 227
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=92.47 E-value=1.1 Score=29.16 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=39.6
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
+..|+.+.|++|++..-.++... -.+.+..++.....+++.+......+|++.. .+|..+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~g----l~~~~~~v~~~~~~~~~~~~np~~~vPvL~~-~~g~~l~e 80 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKN----IPHEVININLKDKPDWFLEKNPQGKVPALEI-DEGKVVYE 80 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcC----CCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE-CCCCEEEC
Confidence 44567888999998776555532 2456666666543333666666788999874 33666554
No 228
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.23 Score=31.84 Aligned_cols=57 Identities=23% Similarity=0.421 Sum_probs=37.7
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC--------------hH-HHHHHcCCCCCCEEEEeeCCEEE
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV--------------PH-KLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--------------~~-~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
+.|++..||.|.....+|+++.-.| -.|++..+ ++ +-.+..|.-++|++++- +|++|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y------d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY------DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc------eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEE
Confidence 6899999999998888887764333 33444332 22 12466788899998764 44444
No 229
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.43 E-value=0.23 Score=33.97 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=23.9
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (174)
..|+.+||+.|++....|++- ++.+-.+|+.++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 568899999999988888763 444455665544
No 230
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=92.20 E-value=1.3 Score=29.97 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=50.3
Q ss_pred cccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEE
Q 030610 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163 (174)
Q Consensus 84 ~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~ 163 (174)
..+.+.++++.++ ..++.++|-|+..--. .+...+.++|..+++++.|+... .. ++.+.+++ .|+++
T Consensus 3 ~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~-~~~~~~~~--~~~iv 69 (104)
T cd03069 3 VELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DK-QLLEKYGY--GEGVV 69 (104)
T ss_pred cccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hH-HHHHhcCC--CCceE
Confidence 4566788899988 6677777777765433 46678888999998888886433 23 37788888 67787
Q ss_pred Ee
Q 030610 164 VN 165 (174)
Q Consensus 164 ~~ 165 (174)
+|
T Consensus 70 l~ 71 (104)
T cd03069 70 LF 71 (104)
T ss_pred EE
Confidence 77
No 231
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=91.77 E-value=0.76 Score=36.38 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=38.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
..+|+.+++..+.|||.|....=.|--....| +++.+...-.+.. + .-..+||+.|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf-Gn~~l~~~~S~~~-d------~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF-GNFSLEYHYSDPY-D------NYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhc-CCeeeEEeecCcc-c------CCCCCCeEEEec
Confidence 67999999999999999998765554445556 6663332222221 1 124679988763
No 232
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=91.72 E-value=0.34 Score=34.45 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=25.5
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 147 (174)
+..|+.+||+.|++....|++. ++.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4578899999999988777763 4555667765554
No 233
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=91.55 E-value=0.41 Score=35.75 Aligned_cols=34 Identities=24% Similarity=0.605 Sum_probs=26.7
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEE
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd 142 (174)
+|.-|+|++|-...|.|.++..+|+..+.+-.|-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence 6889999999999999999999997777665554
No 234
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.25 E-value=0.72 Score=31.94 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=26.0
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 147 (174)
..|+.++|+.|+.....|++ .++.+-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCCh
Confidence 46789999999999988876 35566677776654
No 235
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.69 E-value=0.69 Score=28.43 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=38.0
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHHcCCCCCCEEEEeeCCEEEecC
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMKMPTIQVNSNFFVLLTS 174 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~l~~~~~v~~~Pt~~~~~~G~~v~~~ 174 (174)
..|+.++|+.|++..-.++... -.+....+|.... .+.+.+......+|++.. +|..+..|
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~----~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i~es 65 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLG----IPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVLAES 65 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcC----CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEEEcH
Confidence 3577899999998876666543 2455556664321 123555555668999864 57776543
No 236
>PRK12559 transcriptional regulator Spx; Provisional
Probab=89.57 E-value=0.76 Score=32.70 Aligned_cols=34 Identities=15% Similarity=0.402 Sum_probs=24.0
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (174)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 4578899999999988777763 344455565544
No 237
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=89.06 E-value=3.5 Score=25.76 Aligned_cols=61 Identities=7% Similarity=0.035 Sum_probs=39.5
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHHcCCCCCCEEEEeeCCEEEecC
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMKMPTIQVNSNFFVLLTS 174 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~l~~~~~v~~~Pt~~~~~~G~~v~~~ 174 (174)
..|+.+.|+.|++..-.+++. +-.+.+..+|.... ..++.+.-....+|++. .+|..+..|
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l~Es 65 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNIICDP 65 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEEEcH
Confidence 467888999998877444443 33566677776321 11366666667899995 488877654
No 238
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=88.73 E-value=5.4 Score=26.66 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
.+++.++++. -.+.+.++.|..+. ..|..+...+++++... +++.+-..+.+. ..|++.+..+|
T Consensus 7 ~~qL~~~f~~--l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~------------~~P~~~i~~~~ 70 (94)
T cd02974 7 KQQLKAYLER--LENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE------------RKPSFSINRPG 70 (94)
T ss_pred HHHHHHHHHh--CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC------------CCCEEEEecCC
Confidence 3566666653 45566666676655 99999999999988776 666654333211 35999888766
No 239
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=88.36 E-value=1.2 Score=30.76 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=24.6
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (174)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 3467889999999988888763 445556676554
No 240
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=87.82 E-value=3.5 Score=30.57 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=34.7
Q ss_pred cCCCeEEEEEecCCC-HhhHhhhHHHHHHHHHhC---CCeEEEEEEccCC
Q 030610 101 QLDESVIIVWMASWC-RKCIYLKPKLEKLAADYH---PRLRFYNVDVNAV 146 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC-~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~ 146 (174)
-.+|+++|.|.-+.| ..|-.+...+.++.+.+. .++.++.|.+|..
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 469999999999999 568888878877766652 4688888887754
No 241
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=87.69 E-value=1.2 Score=31.64 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=24.2
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (174)
+..|+.++|+.|++....|++ .++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~------~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA------HQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------cCCCeEEEECCCC
Confidence 346788999999998877765 2455556666544
No 242
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=87.54 E-value=3.8 Score=28.29 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSN 167 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~ 167 (174)
.+.+..+++.+...+-.+++.=+.+. .=+.....+.++..+.... ..+.+ +|. +.++|+|..+|++++-++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g--~~~~t~~~~~~l~~~~~~~---~~v~I--dP~-~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDG--SFKPTAKAIQELLRKDDPC---PGVQI--DPR-LFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCC--CHHHHHHHHHHHhhccCCC---cceeE--Chh-HHhhCCceEcCEEEEEcC
Confidence 46777777765344333333222222 3333333344444333222 33333 554 899999999999999887
No 243
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=87.47 E-value=0.11 Score=42.05 Aligned_cols=64 Identities=17% Similarity=0.458 Sum_probs=45.9
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEE-ccCChHHHHHHcCCCCCCEEEEee
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD-VNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd-~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
+...+|-+.||+.||+.-+...|.+.-....+. .+....++ .-.-+ +...+|++.+.|++.+..
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~-~i~h~~vee~~~lp-sv~s~~~~~~~ps~~~~n 138 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS-SIQHFAVEESQALP-SVFSSYGIHSEPSNLMLN 138 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhcc-ccccccHHHHhhcc-cchhccccccCCcceeec
Confidence 447789999999999999999999987776663 22222221 11223 378899999999987753
No 244
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=86.29 E-value=0.25 Score=32.33 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=42.8
Q ss_pred EecCCCHhhHhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHHcCCCCCCEEE
Q 030610 110 WMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMKMPTIQ 163 (174)
Q Consensus 110 F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~ 163 (174)
|-+.--+..+.+...+..+.+.+ ++++.+--||+.++|+ ++..++|-++||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPE-LAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHS-HHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHh-HHhHCCeeecceEe
Confidence 33445566777888888888875 4579999999999997 99999999999864
No 245
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=84.76 E-value=6.5 Score=30.13 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=44.0
Q ss_pred cCCCeEEEEEecCCCH-hhHhhhHHHHHHHHHhC----CCeEEEEEEccCChH--HHHHHcCC-CCCCEEEEe
Q 030610 101 QLDESVIIVWMASWCR-KCIYLKPKLEKLAADYH----PRLRFYNVDVNAVPH--KLVARAGV-MKMPTIQVN 165 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~-~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~~~--~l~~~~~v-~~~Pt~~~~ 165 (174)
-.+++++|.|.=+.|+ -|-.+...+..+.++.. .++.++-|.+|...+ +..+.|.. ...|-+...
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~l 137 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGL 137 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeee
Confidence 4699999999988886 48888888877777664 356566555554432 46677776 555544443
No 246
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=84.38 E-value=10 Score=25.68 Aligned_cols=71 Identities=10% Similarity=0.019 Sum_probs=48.2
Q ss_pred ccccCCHHHHHHHHHHHhcCC-CeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCE
Q 030610 83 LTPIGSESQFDRVIAEAQQLD-ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPT 161 (174)
Q Consensus 83 ~~~i~s~~~f~~~~~~~~~~~-k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt 161 (174)
+..+.+.++++.++ ... +.++|-|+..--+ .+...+.++|..+++++.|+... +.. +.+.+++.. |.
T Consensus 2 v~~i~s~~ele~f~----~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~-~~~~~~~~~-~~ 69 (107)
T cd03068 2 SKQLQTLKQVQEFL----RDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSE-IFKSLKVSP-GQ 69 (107)
T ss_pred ceEcCCHHHHHHHH----hcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHH-HHHhcCCCC-Cc
Confidence 34567788999988 444 6666666655433 45667888999998888886433 233 778888764 55
Q ss_pred EEEe
Q 030610 162 IQVN 165 (174)
Q Consensus 162 ~~~~ 165 (174)
+++|
T Consensus 70 vvl~ 73 (107)
T cd03068 70 LVVF 73 (107)
T ss_pred eEEE
Confidence 6666
No 247
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=84.23 E-value=5.8 Score=26.36 Aligned_cols=56 Identities=21% Similarity=0.067 Sum_probs=37.7
Q ss_pred cCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 112 ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 112 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
..+|+.|++..=.|.+. +=.+.+..||....++.+.+.--...+|++. .+|..+..
T Consensus 19 ~g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i~e 74 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVKTD 74 (91)
T ss_pred CCCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEecC
Confidence 46799999877666543 2356677788777665466666677899664 46776654
No 248
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=83.44 E-value=1.8 Score=32.00 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=25.7
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRL 136 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v 136 (174)
+..|+-+.||+|-...+.++++.+++.+++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~ 32 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGI 32 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCc
Confidence 567889999999999999999999984333
No 249
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=83.11 E-value=4.6 Score=24.83 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=37.1
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.|+.+.|+.|.+..-.++... .+-.+....+|......++.+......+|++.. .+|..+..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~l~e 64 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEALFD 64 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCEEEC
Confidence 567888999998775555411 122456666664333223555556678997754 36666654
No 250
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.55 E-value=8.9 Score=33.42 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
.+++.+++.+ -.+.+.++.|.. -|..|..+...+++++... +++.+...+.+. ...|++.+.++|
T Consensus 7 ~~~l~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~-----------~~~p~~~~~~~~ 71 (515)
T TIGR03140 7 LAQLKSYLAS--LENPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTADT-----------LRKPSFTILRDG 71 (515)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecCCc-----------CCCCeEEEecCC
Confidence 3566677653 344445555555 6999999999999988776 777765444332 234999888776
Q ss_pred E
Q 030610 169 F 169 (174)
Q Consensus 169 ~ 169 (174)
+
T Consensus 72 ~ 72 (515)
T TIGR03140 72 A 72 (515)
T ss_pred c
Confidence 5
No 251
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=82.49 E-value=3.8 Score=25.36 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=37.7
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---VPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
+..|+.+.|+.|++..-.++... -.+....++... .++.+.+......+|++. .+|..+..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~l~e 65 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG----VDYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLKLFE 65 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC----CCcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEEEEc
Confidence 34556677999998876666543 245555555431 122366666778899875 46776654
No 252
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=82.22 E-value=7.1 Score=27.81 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
.+.+.+++.++...+.++++.=.... .-+.....+.++...- ++ ..+.+ +|. +.++|+|..+|++++.+++
T Consensus 11 ~~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~-~~---~~v~I--dP~-lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 11 EPLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDG-GK---SGVQI--DPQ-WFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred HHHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcC-CC---CcEEE--ChH-HHhhcCceEcCEEEEECCC
Confidence 46677777665444554444423332 1223333333333222 12 23333 564 9999999999999999877
Q ss_pred E
Q 030610 169 F 169 (174)
Q Consensus 169 ~ 169 (174)
.
T Consensus 82 ~ 82 (130)
T TIGR02742 82 L 82 (130)
T ss_pred C
Confidence 3
No 253
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=81.68 E-value=4.9 Score=29.01 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=34.8
Q ss_pred CCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCC
Q 030610 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157 (174)
Q Consensus 103 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~ 157 (174)
...-++.|+.|.|+=|......++. .++++-.+..++-. .+.++|+|.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~-alK~~~gIp 71 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFL-ALKRRLGIP 71 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHH-HHHHhcCCC
Confidence 3456778899999999987766652 46776666666665 478888873
No 254
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.60 E-value=3.1 Score=32.27 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=25.4
Q ss_pred CCeEEEEEecCCCHhhHhhhHHHHHHHHHh
Q 030610 103 DESVIIVWMASWCRKCIYLKPKLEKLAADY 132 (174)
Q Consensus 103 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~ 132 (174)
.+..++.|.-.-|++|+...|.+++.....
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~ 113 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDD 113 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhc
Confidence 478899999999999999999998866665
No 255
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=79.91 E-value=11 Score=28.50 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=41.6
Q ss_pred eEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEecC
Q 030610 105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLTS 174 (174)
Q Consensus 105 ~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~~ 174 (174)
..+-.|+.++|+.|+...=.|++. +-.+.+..||....+.++.+..-...+|++. .+|..+..|
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l~ES 72 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEK----GVSVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTLYES 72 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHC----CCCCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEeeCH
Confidence 345566678899999988656553 2356667777654433355555567799996 477766543
No 256
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=79.11 E-value=2.1 Score=37.65 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCChHHHH--------HHcCCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLV--------ARAGVM 157 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~l~--------~~~~v~ 157 (174)
.+.|+++- .++|++++-..-+.|.+|..|..+- ++.++.+.++++-++||-++-|+ +- ...|--
T Consensus 102 qeaf~kar----~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPD-VDK~YM~Fv~assg~G 176 (786)
T KOG2244|consen 102 QEAFNKAR----AENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPD-VDKLYMAFVVASSGGG 176 (786)
T ss_pred HHHHHHHH----hcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCc-hHHHHHHHHHhccCCC
Confidence 47788877 8899999999999999999876543 55777777778778888777765 22 234555
Q ss_pred CCCEEEEe
Q 030610 158 KMPTIQVN 165 (174)
Q Consensus 158 ~~Pt~~~~ 165 (174)
+.|--+|.
T Consensus 177 GWPmsV~L 184 (786)
T KOG2244|consen 177 GWPMSVFL 184 (786)
T ss_pred CCceeEEe
Confidence 67765554
No 257
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=78.57 E-value=22 Score=25.52 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=45.0
Q ss_pred hcCCCeEEEEEecCCCHhhHhhhHHH---HHHHHHhCCCeEEEEEEccCChH-----------------HHHHHcCCCCC
Q 030610 100 QQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPH-----------------KLVARAGVMKM 159 (174)
Q Consensus 100 ~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~-----------------~l~~~~~v~~~ 159 (174)
..+.|+.+|+...+--..+..+...+ +.+.+-.+.++.+.--|++.... ...+.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 57899999999998774333333222 44444555788888888776521 13456789999
Q ss_pred CEEEEe
Q 030610 160 PTIQVN 165 (174)
Q Consensus 160 Pt~~~~ 165 (174)
|.+.++
T Consensus 98 P~~avI 103 (136)
T cd02990 98 PAILII 103 (136)
T ss_pred CeEEEE
Confidence 998887
No 258
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=77.42 E-value=14 Score=22.67 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=35.3
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCC-CCCCEEEEeeCCEEEec
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV-MKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v-~~~Pt~~~~~~G~~v~~ 173 (174)
.++.+.|+.|.+..=.++... -.+....+|......++.+.... ..+|++.. +|..+..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~g----l~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l~e 62 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKG----VPYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPICE 62 (74)
T ss_pred EEECCCCchHHHHHHHHHHcC----CCCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEeeh
Confidence 456788999999876665542 24555556554333224443333 67998863 6766654
No 259
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=76.38 E-value=17 Score=31.61 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNF 168 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G 168 (174)
.+++.+++.+ -.++|-+.++..-|..|..+...+++++... +++.+-..+.+ ...|++.+..+|
T Consensus 7 ~~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~------------~~~p~~~~~~~~ 70 (517)
T PRK15317 7 KTQLKQYLEL---LERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD------------VRKPSFSITRPG 70 (517)
T ss_pred HHHHHHHHHh---CCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC------------CCCCEEEEEcCC
Confidence 3566777653 3444444444557999999999999988776 77665432211 236999888776
Q ss_pred E
Q 030610 169 F 169 (174)
Q Consensus 169 ~ 169 (174)
+
T Consensus 71 ~ 71 (517)
T PRK15317 71 E 71 (517)
T ss_pred c
Confidence 3
No 260
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=76.06 E-value=24 Score=30.31 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCHhhHhhh--HHHHHH-HHHhCCCeEEEEEEccCChH-HHHHHcCCCCCCEEEEe-
Q 030610 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLK--PKLEKL-AADYHPRLRFYNVDVNAVPH-KLVARAGVMKMPTIQVN- 165 (174)
Q Consensus 91 ~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~--p~l~~l-~~~~~~~v~~~~vd~d~~~~-~l~~~~~v~~~Pt~~~~- 165 (174)
++-++++.+ +.++-++|.|-+--..-...+. -++... .......++.++|+...... .+.+-|.+..+|+++|+
T Consensus 7 nipeAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg 85 (506)
T KOG2507|consen 7 NIPEAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIG 85 (506)
T ss_pred chHHHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeec
Confidence 455566665 4566666666666666666665 233322 23333467888888765432 37788999999999999
Q ss_pred eCCEEEe
Q 030610 166 SNFFVLL 172 (174)
Q Consensus 166 ~~G~~v~ 172 (174)
..|..+.
T Consensus 86 ~sGtpLe 92 (506)
T KOG2507|consen 86 FSGTPLE 92 (506)
T ss_pred CCCceeE
Confidence 7887664
No 261
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=75.40 E-value=6.7 Score=30.80 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=36.9
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC----CCeEEEEEEcc
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH----PRLRFYNVDVN 144 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d 144 (174)
..|+++||-+-..+|..|..-...|+.|..++. .+|.|+.||--
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 668999999999999999998889988876652 37888888854
No 262
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=74.24 E-value=6.5 Score=27.14 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=23.6
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (174)
+..|+.|.|..|++....|++- ++.+-.+|+-++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhcC
Confidence 3568899999999988777763 344455665443
No 263
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=73.03 E-value=3.2 Score=31.76 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.4
Q ss_pred HHHHHcCCCCCCEEEEeeCCEEE
Q 030610 149 KLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
.+++++++.++||+++-+||+.-
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~ 187 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMY 187 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceE
Confidence 47899999999999999999853
No 264
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=72.03 E-value=11 Score=27.68 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=28.9
Q ss_pred EEEEEecCCCHhhHhhhHHHHHHHHHh-CCCeEEEEEE
Q 030610 106 VIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVD 142 (174)
Q Consensus 106 vlV~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd 142 (174)
.|..|+..-||+|-...+.+.++.+.+ +-++.+.-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 367889999999999999999999999 2234444443
No 265
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=71.77 E-value=4.4 Score=28.87 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 149 KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
..+++++|.++||+++ ||+.+.
T Consensus 127 ~~~~~~~i~~tPt~~i--nG~~~~ 148 (162)
T PF13462_consen 127 QLARQLGITGTPTFFI--NGKYVV 148 (162)
T ss_dssp HHHHHHT-SSSSEEEE--TTCEEE
T ss_pred HHHHHcCCccccEEEE--CCEEeC
Confidence 3678999999999998 888764
No 266
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=71.75 E-value=3.9 Score=30.45 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=15.0
Q ss_pred HHHHHcCCCCCCEEEEee
Q 030610 149 KLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~~ 166 (174)
.++++++|+++||++++.
T Consensus 138 ~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 138 QLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHTT-SSSSEEEEE-
T ss_pred HHHHHcCCCCCCEEEEEe
Confidence 488999999999999997
No 267
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.36 E-value=18 Score=28.22 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=38.7
Q ss_pred cCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCC-CCCCEE-EEeeCCEEEe
Q 030610 112 ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV-MKMPTI-QVNSNFFVLL 172 (174)
Q Consensus 112 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v-~~~Pt~-~~~~~G~~v~ 172 (174)
.|-|+..+.+...|... ++.+...|+-.+.+ +.+..+. ...||+ .+|-+|+.+.
T Consensus 151 ~P~CGFS~~~v~iL~~~------nV~~~~fdIL~Dee-lRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSH------NVNYTIFDVLTDEE-LRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred cccccccHHHHHHHHHc------CCCeeEEeccCCHH-HHHHhhhhcCCCCccceeECCEecc
Confidence 57788888877666553 44577888888875 7766654 568997 8888888654
No 268
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=69.73 E-value=12 Score=23.16 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=37.5
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
..|+.+-|+.|+.+.-.++... -.+....+|.... .+++.+......+|++. .+|..+..
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g----~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l~e 64 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNK----IPFEECPIDLRKGEQLTPEFKKINPFGKVPAIV--DGDFTLAE 64 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcC----CCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE--ECCEEEEc
Confidence 3567788999988766555543 2455556665321 12366666678899986 36766654
No 269
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=69.03 E-value=6.2 Score=27.60 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.6
Q ss_pred HHHHHcCCCCCCEEEEeeCCEEE
Q 030610 149 KLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
.++.+++|.++||+++ +|+.+
T Consensus 120 ~~~~~~gi~gtPt~~v--~g~~~ 140 (154)
T cd03023 120 QLARALGITGTPAFII--GDTVI 140 (154)
T ss_pred HHHHHcCCCcCCeEEE--CCEEe
Confidence 3778999999999776 56654
No 270
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=68.71 E-value=25 Score=24.07 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=38.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCC
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV 146 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~ 146 (174)
-.++++||.=-|+-|+.=. -...|++|.++|++ ++.++..-|+..
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 4588888888899999988 77799999999964 799999988653
No 271
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=64.22 E-value=13 Score=25.42 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=23.2
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (174)
..|+.+.|..|++...+|++. ++.+-.+|+-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecccC
Confidence 468899999999988777753 444455665444
No 272
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=64.14 E-value=13 Score=25.53 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=24.2
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (174)
..|+.+.|..|++...+|++. ++.+-.+|+-++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 468899999999998888763 444455776554
No 273
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=64.04 E-value=15 Score=25.47 Aligned_cols=52 Identities=21% Similarity=0.440 Sum_probs=36.5
Q ss_pred CCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCC--CCCCEEEEee
Q 030610 114 WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV--MKMPTIQVNS 166 (174)
Q Consensus 114 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v--~~~Pt~~~~~ 166 (174)
.|++|..+.-.|.-.- .+...+.+.+|+...-..++....|= ++.|.+++=.
T Consensus 23 ~Cp~c~~iEGlLa~~P-~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFP-DLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhCh-hhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 3999998887765432 33467889999988776556655553 6889887643
No 274
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=63.43 E-value=8.9 Score=28.19 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=16.9
Q ss_pred HHHHHcCCCCCCEEEEeeCCEEE
Q 030610 149 KLVARAGVMKMPTIQVNSNFFVL 171 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~~~G~~v 171 (174)
..+.++||.++||+++ ||+.+
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~~~ 178 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGEMF 178 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCeee
Confidence 3678899999999988 67654
No 275
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=62.79 E-value=8.3 Score=28.33 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHcCCCCCCEEEEeeCCE
Q 030610 149 KLVARAGVMKMPTIQVNSNFF 169 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~~~G~ 169 (174)
..+.++||.++||+++ ||+
T Consensus 158 ~~a~~~gv~GvP~~vv--~g~ 176 (193)
T PF01323_consen 158 AEARQLGVFGVPTFVV--NGK 176 (193)
T ss_dssp HHHHHTTCSSSSEEEE--TTT
T ss_pred HHHHHcCCcccCEEEE--CCE
Confidence 3678999999999999 776
No 276
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.57 E-value=10 Score=27.96 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.7
Q ss_pred HHHHHcCCCCCCEEEEeeCCE
Q 030610 149 KLVARAGVMKMPTIQVNSNFF 169 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~~~G~ 169 (174)
..+.++||.++||+++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 367889999999999997764
No 277
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.27 E-value=11 Score=29.44 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=14.3
Q ss_pred HHHHHcCCCCCCEEEE
Q 030610 149 KLVARAGVMKMPTIQV 164 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~ 164 (174)
..++++||+++|||+|
T Consensus 175 ~~A~e~gI~gVP~fv~ 190 (225)
T COG2761 175 AAAQEMGIRGVPTFVF 190 (225)
T ss_pred HHHHHCCCccCceEEE
Confidence 3578999999999999
No 278
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=58.21 E-value=17 Score=24.44 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=34.1
Q ss_pred EecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCC--CCCEEEE-eeCCE
Q 030610 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--KMPTIQV-NSNFF 169 (174)
Q Consensus 110 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~--~~Pt~~~-~~~G~ 169 (174)
||-.+|+.|......+.+.. -.+.+.|+-+.-.... ++.+.+++. ..-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d--~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD--RGGRLRFVDIQSEPDQ-ALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC--CCCCEEEEECCChhhh-hHHHhcCcCHHHHcCeeEEecCCC
Confidence 68889999999988887761 1245666444222222 245666664 3444333 57776
No 279
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=56.89 E-value=33 Score=26.54 Aligned_cols=50 Identities=12% Similarity=0.286 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEEe-----cCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEE
Q 030610 90 SQFDRVIAEAQQLDESVIIVWM-----ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVD 142 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~-----a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd 142 (174)
-.+.++.. ....++|-.|- ..-|+.|-.+.-.+......+.. ++.|+.|.
T Consensus 58 v~L~dLF~---Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vS 113 (211)
T PF05988_consen 58 VSLADLFE---GRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVS 113 (211)
T ss_pred ccHHHHcC---CCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEe
Confidence 45555652 34555665664 57899999999998655555544 57777776
No 280
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=53.98 E-value=51 Score=26.22 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=35.0
Q ss_pred CCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 114 WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 114 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
+|+.|++..-.|++.. -.+.+..||....++++.+.--...+|++.. +|..+..
T Consensus 72 ~cp~s~rV~i~L~ekg----i~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~--d~~~L~E 125 (265)
T PLN02817 72 DCPFCQRVLLTLEEKH----LPYDMKLVDLTNKPEWFLKISPEGKVPVVKL--DEKWVAD 125 (265)
T ss_pred CCcHHHHHHHHHHHcC----CCCEEEEeCcCcCCHHHHhhCCCCCCCEEEE--CCEEEec
Confidence 4999999887776543 3566777787655443555444567999974 4555543
No 281
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.91 E-value=84 Score=24.68 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=41.9
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcC-CC-CCCEEEEeeCCEEEecC
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAG-VM-KMPTIQVNSNFFVLLTS 174 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~-v~-~~Pt~~~~~~G~~v~~~ 174 (174)
.+.+.|+.+|+ ||.-++.. ++...++ .+.++.+|...-++ +.-+.+ +. .+|.+ ..||+.|..|
T Consensus 7 ~~~vrL~~~w~--sPfa~R~~-----iaL~~KgI~yE~veedl~~Ks~-~ll~~np~hkKVPvL--~Hn~k~i~ES 72 (231)
T KOG0406|consen 7 DGTVKLLGMWF--SPFAQRVR-----IALKLKGIPYEYVEEDLTNKSE-WLLEKNPVHKKVPVL--EHNGKPICES 72 (231)
T ss_pred CCeEEEEEeec--ChHHHHHH-----HHHHhcCCceEEEecCCCCCCH-HHHHhccccccCCEE--EECCceehhh
Confidence 36678888888 88877754 4555544 57888888865444 666666 64 48865 4677766544
No 282
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=52.61 E-value=58 Score=24.46 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=12.1
Q ss_pred cCCCeEEEEEe-cCCCHhhHh
Q 030610 101 QLDESVIIVWM-ASWCRKCIY 120 (174)
Q Consensus 101 ~~~k~vlV~F~-a~wC~~C~~ 120 (174)
..+++||++|| +..-|.|-.
T Consensus 88 t~nk~vV~f~YP~asTPGCTk 108 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTK 108 (211)
T ss_pred cCCCcEEEEEeccCCCCCccc
Confidence 45668888888 334444443
No 283
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=52.35 E-value=52 Score=20.08 Aligned_cols=59 Identities=8% Similarity=0.000 Sum_probs=32.9
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.+|.+-|+.|+...=.+++.. -.+....++.+...+++.+.-....+|++. .+|..+..
T Consensus 4 Ly~~~~~~~~~~v~~~L~~~~----i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~e 62 (73)
T cd03076 4 LTYFPVRGRAEAIRLLLADQG----ISWEEERVTYEEWQESLKPKMLFGQLPCFK--DGDLTLVQ 62 (73)
T ss_pred EEEeCCcchHHHHHHHHHHcC----CCCEEEEecHHHhhhhhhccCCCCCCCEEE--ECCEEEEc
Confidence 445567899987665555542 245555565532222233333345689985 36776654
No 284
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=51.66 E-value=33 Score=23.14 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=21.3
Q ss_pred EecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 030610 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (174)
Q Consensus 110 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 147 (174)
|+.+.|..|+.....|++ .++.+-.+|+.+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~------~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE------NGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH------TT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHH------cCCCeEeehhhhCC
Confidence 577899999999988886 35556678887653
No 285
>PLN02378 glutathione S-transferase DHAR1
Probab=51.23 E-value=61 Score=24.46 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=34.9
Q ss_pred CCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 113 SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 113 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.+|++|++..=.+++.. -.+.+..||....+.++.+-.-...+|++. .+|..+..
T Consensus 18 ~~~p~~~rv~~~L~e~g----l~~e~~~v~~~~~~~~~l~inP~G~VPvL~--~~~~~l~E 72 (213)
T PLN02378 18 GDCPFSQRALLTLEEKS----LTYKIHLINLSDKPQWFLDISPQGKVPVLK--IDDKWVTD 72 (213)
T ss_pred CCCcchHHHHHHHHHcC----CCCeEEEeCcccCCHHHHHhCCCCCCCEEE--ECCEEecC
Confidence 44999998876665542 346666777754443355555566799884 35666544
No 286
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=51.22 E-value=85 Score=24.06 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=37.2
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC--C---------h------HHHHHHcCCCCCCEEEEeeCCE
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA--V---------P------HKLVARAGVMKMPTIQVNSNFF 169 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~---------~------~~l~~~~~v~~~Pt~~~~~~G~ 169 (174)
|=.|.+..|..|=.....|.+|+.. +++..+..-+|- . + ...++.++..++-|=.++-||.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~--~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~ 79 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR--PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGR 79 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH--TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC--CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCe
Confidence 4468899999999999999999988 366555554432 1 1 1356777887766666666665
Q ss_pred E
Q 030610 170 V 170 (174)
Q Consensus 170 ~ 170 (174)
.
T Consensus 80 ~ 80 (202)
T PF06764_consen 80 E 80 (202)
T ss_dssp E
T ss_pred e
Confidence 4
No 287
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=50.69 E-value=21 Score=26.44 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 149 KLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
..+.+.||.++||+++ ||+.+..
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~~~~~ 188 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGKYAVS 188 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCeEeec
No 288
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=50.42 E-value=74 Score=24.91 Aligned_cols=55 Identities=20% Similarity=0.031 Sum_probs=37.3
Q ss_pred CCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 113 SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 113 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.-|++|++..=.+.. .+-.+.+..+|....++++.+.--...+|++.- +|..+..
T Consensus 17 ~~cp~~~rv~i~L~e----kgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l~E 71 (236)
T TIGR00862 17 GNCPFSQRLFMILWL----KGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVKTD 71 (236)
T ss_pred CCCHhHHHHHHHHHH----cCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEeec
Confidence 459999988766654 223678888888765444666666677999854 6776654
No 289
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=49.54 E-value=9.2 Score=23.53 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=31.8
Q ss_pred CCHhhHhhhHHHHHHHHHhCCCeEEEEEEc----cCChHHHHHHcCCCCCCEEEEeeCCEEEecC
Q 030610 114 WCRKCIYLKPKLEKLAADYHPRLRFYNVDV----NAVPHKLVARAGVMKMPTIQVNSNFFVLLTS 174 (174)
Q Consensus 114 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~----d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~~ 174 (174)
+||+|++..=.++...-. ..+..++. ...+..+.+--.-..+|++.. .+|+++..|
T Consensus 1 ~sP~a~Rv~i~l~~~gl~----~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~eS 60 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLP----YEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVINES 60 (70)
T ss_dssp T-HHHHHHHHHHHHHTGT----CEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEESH
T ss_pred CchHhHHHHHHHHHhCCC----CEEEEEeeecCccccChhhhccCcCeEEEEEEE-CCCCEeeCH
Confidence 599999887666655332 23333432 111123666666677999887 478877653
No 290
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=49.17 E-value=22 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEEEecCCCHhhHhhhHHHHHHH
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLA 129 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~ 129 (174)
+..|+.|.|..|+....+|++..
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 45788999999999998888743
No 291
>PRK10853 putative reductase; Provisional
Probab=49.00 E-value=32 Score=23.85 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=23.9
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (174)
+..|+.+.|..|++....|++- ++.+-.+|.-++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeehccC
Confidence 4567889999999999888763 444455665443
No 292
>PRK10387 glutaredoxin 2; Provisional
Probab=48.91 E-value=66 Score=23.83 Aligned_cols=59 Identities=8% Similarity=0.148 Sum_probs=33.6
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.++.+.|++|.+..-.++... -.++...++...... ..+......+|++.. .+|..+..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~g----i~y~~~~~~~~~~~~-~~~~~p~~~VPvL~~-~~g~~l~e 61 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKN----IPVELIVLANDDEAT-PIRMIGQKQVPILQK-DDGSYMPE 61 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcC----CCeEEEEcCCCchhh-HHHhcCCcccceEEe-cCCeEecC
Confidence 345778999998776555442 244554454433321 222333457898854 46776654
No 293
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=47.40 E-value=69 Score=25.06 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=35.6
Q ss_pred HhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 116 RKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 116 ~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.+|..++..|++++++++..+.++--|++- +..|. =.++-+++|+++.+
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDINf-----AS~Ys----D~IVAlK~G~vv~~ 217 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDINF-----ASCYS----DHIVALKNGKVVKQ 217 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecccH-----HHhhh----hheeeecCCEEEec
Confidence 789999999999999997777776666642 22222 24677788887753
No 294
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=45.78 E-value=48 Score=26.86 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEE---ecCCCHhhHhhhHHH
Q 030610 88 SESQFDRVIAEAQQLDESVIIVW---MASWCRKCIYLKPKL 125 (174)
Q Consensus 88 s~~~f~~~~~~~~~~~k~vlV~F---~a~wC~~C~~~~p~l 125 (174)
....+.+--.+ -.....||.| |.=||..|+.....=
T Consensus 27 g~h~lrerarK--i~~gilvIRFEMPynIWC~gC~nhIgmG 65 (317)
T KOG2990|consen 27 GTHALRERARK--IDQGILVIRFEMPYNIWCDGCKNHIGMG 65 (317)
T ss_pred cchhHHHHHHh--hccceEEEEEecccchhhccHHHhhhcc
Confidence 33455444332 3567788888 566999999765443
No 295
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=45.28 E-value=1e+02 Score=21.39 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=50.8
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC--CCeEEEEEEccCChH---HHHHHcCCC-CCCEEEEe
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVPH---KLVARAGVM-KMPTIQVN 165 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~---~l~~~~~v~-~~Pt~~~~ 165 (174)
..++..++-|--+--+.-.++.+.+.++|+.+. ++..|+.||-|+.|- ...+.|+|. .=|.+=+.
T Consensus 18 d~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV 88 (120)
T cd03074 18 DLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVV 88 (120)
T ss_pred ccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeE
Confidence 456888889999999999999999999999984 479999999999873 133567764 24665443
No 296
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=45.20 E-value=86 Score=24.35 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=33.0
Q ss_pred CCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEE
Q 030610 114 WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 114 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~ 164 (174)
-|+.|+.+.-.|. .+. -.+.+-.||....++.+.+-..-...|-+.+
T Consensus 20 dcpf~qr~~m~L~---~k~-~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~ 66 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKG-VPFKVTTVDLSRKPEWFLDISPGGKPPVLKF 66 (221)
T ss_pred CChhHHHHHHHHH---HcC-CCceEEEeecCCCcHHHHhhCCCCCCCeEEe
Confidence 3888887776666 222 3788889999988875656666667776654
No 297
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=44.22 E-value=76 Score=24.77 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=40.2
Q ss_pred EEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
+=.|....|..|-.+...|+.-. +-++++| +|+...+. ++-+-+|-++|++ |.+|++++
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nkg--ll~~Vki--i~a~~p~f-~~~~~~V~SvP~V--f~DGel~~ 71 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENKG--LLGKVKI--IDAELPPF-LAFEKGVISVPSV--FIDGELVY 71 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhcC--CCCCceE--EEcCCChH-HHhhcceeecceE--EEcCeEEE
Confidence 33456678999998887776511 1256776 56666664 6666688899986 56888775
No 298
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=43.93 E-value=55 Score=24.14 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=34.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccC
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA 145 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 145 (174)
-.+|++||.=.|+-|+.--+ ...|+.|.++|++ ++.++-.-|+.
T Consensus 23 ~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQ 67 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQ 67 (162)
T ss_pred hCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccc
Confidence 45899999999999997764 4477888888865 68888777754
No 299
>PRK10026 arsenate reductase; Provisional
Probab=43.73 E-value=49 Score=23.82 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=18.3
Q ss_pred EEEEecCCCHhhHhhhHHHHHH
Q 030610 107 IIVWMASWCRKCIYLKPKLEKL 128 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l 128 (174)
+..|+.+.|..|++...+|++.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4567899999999999888764
No 300
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=43.35 E-value=91 Score=23.45 Aligned_cols=58 Identities=9% Similarity=0.101 Sum_probs=31.7
Q ss_pred EecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 110 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
++...|++|++..=.|....- .+....++.+.... ..+......+|++.. .+|..+..
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl----~~e~~~~~~~~~~~-~~~~np~g~vP~l~~-~~g~~l~e 60 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNI----PVEKHVLLNDDEET-PIRMIGAKQVPILQK-DDGRAMPE 60 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCC----CeEEEECCCCcchh-HHHhcCCCCcceEEe-eCCeEecc
Confidence 456779999877755554332 33333333333322 333333567897743 47766654
No 301
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=42.85 E-value=68 Score=23.49 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=36.0
Q ss_pred CCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEcc
Q 030610 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (174)
Q Consensus 102 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (174)
.++-+.+.++++.++-|.-+...++.+|+.+.+ ++.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 356788899999999999999999999999977 7777666654
No 302
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=42.60 E-value=1.1e+02 Score=21.56 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHh----CCCeEEEEEEccCChH---------HHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 121 LKPKLEKLAADY----HPRLRFYNVDVNAVPH---------KLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 121 ~~p~l~~l~~~~----~~~v~~~~vd~d~~~~---------~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
..|.|.+++..+ +.++.+.+.|...+|. ++.+.-|...+|-++ -||+++.+
T Consensus 22 vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitl--VdGeiv~~ 85 (123)
T PF06953_consen 22 VDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITL--VDGEIVKT 85 (123)
T ss_dssp --HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEE--ETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEE--ECCEEEEe
Confidence 355565554443 3589999999988764 344667888999654 47777653
No 303
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=42.53 E-value=56 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=18.2
Q ss_pred EEEEecCCCHhhHhhhHHHHHH
Q 030610 107 IIVWMASWCRKCIYLKPKLEKL 128 (174)
Q Consensus 107 lV~F~a~wC~~C~~~~p~l~~l 128 (174)
+..|+-+.|..|++....|++.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4567789999999999888764
No 304
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=41.84 E-value=81 Score=19.24 Aligned_cols=59 Identities=8% Similarity=0.160 Sum_probs=36.6
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---VPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.|+.+-|+.|.+..-.++.. +-.+.+..+|... .+ ++.+..-...+|++.. .+|..+..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~-~~~~~nP~~~vP~L~~-~~g~~l~e 64 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYN----GLDVEIVDFQPGKENKTP-EFLKKFPLGKVPAFEG-ADGFCLFE 64 (75)
T ss_pred EecCCCCccHHHHHHHHHHc----CCceEEEecccccccCCH-HHHHhCCCCCCCEEEc-CCCCEEee
Confidence 45677788888776555543 2356666777642 23 3555556778999964 35665543
No 305
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=39.93 E-value=38 Score=20.46 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=33.1
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChH-HHHHHcCCCCCCEEEEeeCCEEEecC
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH-KLVARAGVMKMPTIQVNSNFFVLLTS 174 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-~l~~~~~v~~~Pt~~~~~~G~~v~~~ 174 (174)
.++.+.|+.|+...=.+++..- .+....+|..+... ++.+......+|++.. +|..+..|
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~es 63 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADAGV----EYEDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKKLTQS 63 (72)
T ss_pred EEEEcCcchHHHHHHHHHHCCC----CcEEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEEEEec
Confidence 3455778899877655555432 44555555433221 1333344567898853 57666543
No 306
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=39.90 E-value=21 Score=22.85 Aligned_cols=13 Identities=31% Similarity=0.186 Sum_probs=11.8
Q ss_pred CEEEEeeCCEEEe
Q 030610 160 PTIQVNSNFFVLL 172 (174)
Q Consensus 160 Pt~~~~~~G~~v~ 172 (174)
|++.+|+||+.+.
T Consensus 13 Pti~W~kng~~l~ 25 (79)
T cd05855 13 PTLQWFHEGAILN 25 (79)
T ss_pred CceEEEECCEECC
Confidence 9999999999874
No 307
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=39.06 E-value=87 Score=18.82 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=28.0
Q ss_pred cCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 112 ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 112 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.+||+.|.++.-.+.... -.+.+..++... .-....+|++.. +|+.+..
T Consensus 13 ~s~sp~~~~v~~~L~~~~----i~~~~~~~~~~~-------~~p~g~vP~l~~--~g~~l~e 61 (72)
T cd03054 13 PSLSPECLKVETYLRMAG----IPYEVVFSSNPW-------RSPTGKLPFLEL--NGEKIAD 61 (72)
T ss_pred CCCCHHHHHHHHHHHhCC----CceEEEecCCcc-------cCCCcccCEEEE--CCEEEcC
Confidence 469999999887766532 234444444322 011236898854 5666543
No 308
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=37.42 E-value=2e+02 Score=22.53 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=34.9
Q ss_pred cCCCeEEEEEecCCC-Hh-hHhhhHHHHHHHHHh----CCCeEEEEEEccCChH---HHHHHcCCCCCC
Q 030610 101 QLDESVIIVWMASWC-RK-CIYLKPKLEKLAADY----HPRLRFYNVDVNAVPH---KLVARAGVMKMP 160 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC-~~-C~~~~p~l~~l~~~~----~~~v~~~~vd~d~~~~---~l~~~~~v~~~P 160 (174)
.=+++|-|.+|.+-- +. =....+.++++.++| ++++.+-.||.+.+++ +.++++||...+
T Consensus 22 ~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 22 SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQ 90 (271)
T ss_pred hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccc
Confidence 335566666665541 11 233444444444443 3489999999988775 234458887744
No 309
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=37.12 E-value=18 Score=22.89 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=31.3
Q ss_pred cCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHH---HcCCCCCCEEEEeeCCEEEec
Q 030610 112 ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVA---RAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 112 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~---~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
-+||+.|.+..-.|....- .+....++...... ... .-....+|++.. .+|..+..
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i----~~~~~~~~~~~~~~-~~~~~~~~p~~~vP~L~~-~~~~~l~e 71 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGL----EYKTVPVEFPDIPP-ILGELTSGGFYTVPVIVD-GSGEVIGD 71 (84)
T ss_pred CCcCChhHHHHHHHHhCCC----CCeEEEecCCCccc-ccccccCCCCceeCeEEE-CCCCEEeC
Confidence 3689999988766665322 34555566443221 222 123457898843 32766654
No 310
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=37.09 E-value=82 Score=19.02 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=34.6
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
.++.++++.|....-.+++.. -.+.+..++.... ..++.+......+|++. .+|..+..
T Consensus 3 l~~~~~s~~~~~v~~~L~~~~----l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~--~~~~~l~e 64 (73)
T cd03047 3 IWGRRSSINVQKVLWLLDELG----LPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLE--DGDFVLWE 64 (73)
T ss_pred EEecCCCcchHHHHHHHHHcC----CCCEEEEeccccccccCHHHHhhCCCCCCCEEE--ECCEEEEC
Confidence 456777888888776666643 2455555554221 12355555667799984 35665554
No 311
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=36.56 E-value=1e+02 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEE
Q 030610 125 LEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFV 170 (174)
Q Consensus 125 l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~ 170 (174)
+.++.+.++..+-| |..+. |.++|+|..+|+++. .+|+.
T Consensus 158 ~~~l~~~l~~~vYf-----dQ~g~-Lt~rF~I~~VPavV~-q~g~~ 196 (202)
T TIGR02743 158 VNELEKRLDSRIYF-----DQHGK-LTQKFGIKHVPARVS-QEGLR 196 (202)
T ss_pred HHHHHHHhCCceEE-----cCCch-HhhccCceeeceEEE-ecCCE
Confidence 56667777444443 55554 999999999999986 45543
No 312
>PRK15113 glutathione S-transferase; Provisional
Probab=35.90 E-value=76 Score=23.85 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=37.3
Q ss_pred EEEEEecC--CCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 106 VIIVWMAS--WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 106 vlV~F~a~--wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
-+..++.+ .|+.|++..-.+++.. -.+.+..+|.... .+++.+..-...+|++. .+|..+..
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~g----i~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~--~~~~~l~E 71 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKG----LPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQ--HDDFELSE 71 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcC----CCCeEEEeCCCCccccCHHHHhcCCCCCCCEEE--ECCEEEec
Confidence 34555654 6999988765555542 2466667776431 12355555556799996 36766654
No 313
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=35.73 E-value=1.3e+02 Score=19.82 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=12.1
Q ss_pred CCeEEEEEEccCChH
Q 030610 134 PRLRFYNVDVNAVPH 148 (174)
Q Consensus 134 ~~v~~~~vd~d~~~~ 148 (174)
.++.|-.+|++.+++
T Consensus 29 k~I~f~eiDI~~d~~ 43 (92)
T cd03030 29 KKIEFEEVDISMNEE 43 (92)
T ss_pred CCCceEEEecCCCHH
Confidence 368889999988775
No 314
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=35.29 E-value=1.4e+02 Score=19.96 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=30.3
Q ss_pred CCHhhHhh------hHHHH-HHHHHhCC-CeEEEEEEccCChH-----HHHHHcCC--CCCCEEEEeeCCEEEe
Q 030610 114 WCRKCIYL------KPKLE-KLAADYHP-RLRFYNVDVNAVPH-----KLVARAGV--MKMPTIQVNSNFFVLL 172 (174)
Q Consensus 114 wC~~C~~~------~p~l~-~l~~~~~~-~v~~~~vd~d~~~~-----~l~~~~~v--~~~Pt~~~~~~G~~v~ 172 (174)
-|..|..+ ..+|+ .+.++|.+ .+.+-+||+...++ +++++..= --+|-+ .-+|++|.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV--~i~~eiV~ 79 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLV--VINDEIVA 79 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEE--EETTEEEE
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceE--EECCEEEe
Confidence 58777653 34444 35677854 59999999976543 35555332 246644 44777765
No 315
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=34.95 E-value=36 Score=26.24 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.2
Q ss_pred ChHHHHHHcCCCCCCEEEEee
Q 030610 146 VPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 146 ~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
+|. +.++|+|..+|+|++..
T Consensus 151 DP~-lF~~F~I~~VPafVv~C 170 (212)
T PRK13730 151 DPT-LFSQYGIRSVPALVVFC 170 (212)
T ss_pred CHH-HHHhcCCccccEEEEEc
Confidence 564 89999999999999863
No 316
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=34.04 E-value=59 Score=25.74 Aligned_cols=65 Identities=23% Similarity=0.156 Sum_probs=45.9
Q ss_pred CCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEE--EEEcc----------------CChHHHHHHcCCCCCCEEEE
Q 030610 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFY--NVDVN----------------AVPHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 103 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~--~vd~d----------------~~~~~l~~~~~v~~~Pt~~~ 164 (174)
.+-||=.|.+..|..|=.....|.+++.+- ++.-+ .||.- .+. ...+.|+-++++|-..
T Consensus 41 ~~~VVELfTSQGCsSCPPAd~~l~k~a~~~--~vlALsyhVdYWdYlGWkDtlar~enTeRQ~-aY~~a~g~~~vyTPQa 117 (261)
T COG5429 41 PLGVVELFTSQGCSSCPPADANLAKLADDP--GVLALSYHVDYWDYLGWKDTLARKENTERQR-AYARAFGARGVYTPQA 117 (261)
T ss_pred CceEEEEeecCCcCCCChHHHHHHHhccCC--CEEEEEEeecccccCCccccccchhhhHHHH-HHHHhhccCCCCCchh
Confidence 355667788999999999999998887653 34333 33421 112 4678899999999888
Q ss_pred eeCCEE
Q 030610 165 NSNFFV 170 (174)
Q Consensus 165 ~~~G~~ 170 (174)
+-||..
T Consensus 118 vvnGr~ 123 (261)
T COG5429 118 VVNGRV 123 (261)
T ss_pred eeechh
Confidence 887764
No 317
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=33.90 E-value=38 Score=20.74 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=11.2
Q ss_pred CEEEEeeCCEEEe
Q 030610 160 PTIQVNSNFFVLL 172 (174)
Q Consensus 160 Pt~~~~~~G~~v~ 172 (174)
|++.+|+||+.+.
T Consensus 13 P~v~W~kdg~~l~ 25 (67)
T cd05863 13 PEFQWYKDGKLIS 25 (67)
T ss_pred CEEEEEECCEECc
Confidence 8899999998774
No 318
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.77 E-value=2.2e+02 Score=24.37 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=46.9
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEE
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFV 170 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~ 170 (174)
-.+..-+=-|++-.|..|-..-..|.-. .-+++++.-.-||-.-..+ =.+.-+|.++||+++ ||+.
T Consensus 114 i~g~~~FETy~SltC~nCPDVVQALN~m-svlNp~I~H~~IdGa~Fq~-Evear~IMaVPtvfl--nGe~ 179 (520)
T COG3634 114 IDGDFHFETYFSLTCHNCPDVVQALNLM-SVLNPRIKHTAIDGALFQD-EVEARNIMAVPTVFL--NGEE 179 (520)
T ss_pred cCCceeEEEEEEeeccCChHHHHHHHHH-HhcCCCceeEEecchhhHh-HHHhccceecceEEE--cchh
Confidence 4566777778888999998776666543 3346899988898766654 344558999999754 5543
No 319
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=32.64 E-value=1.9e+02 Score=20.74 Aligned_cols=86 Identities=9% Similarity=0.062 Sum_probs=44.1
Q ss_pred ccccCCHHHHHHHHHHHhcCCCeEEEEEecCCCHhhH-hhhHHHHHHHHHhCCCeEEEEEEccCChHH--HHHHcCC---
Q 030610 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCI-YLKPKLEKLAADYHPRLRFYNVDVNAVPHK--LVARAGV--- 156 (174)
Q Consensus 83 ~~~i~s~~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~-~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~--l~~~~~v--- 156 (174)
..++.+.++.++.+.+ ..+..||.. .+-||--- ...|-.......-+..=.++.|=.....++ -++.|-.
T Consensus 18 f~eL~T~e~Vd~~~~~---~~GTtlVvV-NSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~p 93 (136)
T PF06491_consen 18 FEELTTAEEVDEALKN---KEGTTLVVV-NSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYP 93 (136)
T ss_dssp -EE--SHHHHHHHHHH-----SEEEEEE-E-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS-
T ss_pred ccccCCHHHHHHHHhC---CCCcEEEEE-eccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCC
Confidence 6778889999999963 344444433 56786333 334554433222112234455555544432 2344332
Q ss_pred CCCCEEEEeeCCEEEe
Q 030610 157 MKMPTIQVNSNFFVLL 172 (174)
Q Consensus 157 ~~~Pt~~~~~~G~~v~ 172 (174)
.+-|++.+||+|+++.
T Consensus 94 PSSPS~ALfKdGelvh 109 (136)
T PF06491_consen 94 PSSPSIALFKDGELVH 109 (136)
T ss_dssp --SSEEEEEETTEEEE
T ss_pred CCCchheeeeCCEEEE
Confidence 3678999999999875
No 320
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.12 E-value=60 Score=25.00 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.5
Q ss_pred eEEEEEecCCCHhhHhhhHHHHHHHHHh
Q 030610 105 SVIIVWMASWCRKCIYLKPKLEKLAADY 132 (174)
Q Consensus 105 ~vlV~F~a~wC~~C~~~~p~l~~l~~~~ 132 (174)
..|.+.+-|-|++|--..|.++++.+..
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhcC
Confidence 3577889999999999999999998764
No 321
>PRK11752 putative S-transferase; Provisional
Probab=32.00 E-value=2.3e+02 Score=22.20 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=39.2
Q ss_pred EEEecCCCHhhHhhhHHHHHH-HHHhC-CCeEEEEEEccC----ChHHHHHHcCCCCCCEEEEeeC--CEEEec
Q 030610 108 IVWMASWCRKCIYLKPKLEKL-AADYH-PRLRFYNVDVNA----VPHKLVARAGVMKMPTIQVNSN--FFVLLT 173 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l-~~~~~-~~v~~~~vd~d~----~~~~l~~~~~v~~~Pt~~~~~~--G~~v~~ 173 (174)
+.+|..+|+.|++..=.|+++ +...+ -.+.+..||... .+ ++.+---...+|++..-.+ |..+..
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~-e~~~iNP~GkVP~Lv~~dg~~~~~L~E 117 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSS-GFVEINPNSKIPALLDRSGNPPIRVFE 117 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCH-HHHhhCCCCCCCEEEeCCCCCCeEEEc
Confidence 334445799999988778774 33332 257777777643 23 3555555667999964322 245544
No 322
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=31.62 E-value=1e+02 Score=23.03 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=36.2
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccC
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA 145 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 145 (174)
-.++++||.=-|+.|+.=..-...|..|.++|++ +++++..-|+.
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 3588888888899999988777899999999854 68888777753
No 323
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=30.77 E-value=1.1e+02 Score=22.21 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=25.0
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEE
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNV 141 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 141 (174)
.|+-.-||+|-...+.|+++...++-.+.+.-+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 456678999999999999999888544444333
No 324
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=30.32 E-value=1.2e+02 Score=17.90 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=30.8
Q ss_pred EecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---VPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 110 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
|+.+.|+.|....-.++.. +-.+....+|... ..+++.+......+|++. .+|..+..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~e 64 (73)
T cd03042 4 YSYFRSSASYRVRIALNLK----GLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV--IDGLVLTQ 64 (73)
T ss_pred ecCCCCcchHHHHHHHHHc----CCCCeEEEecCccCCcCChHHHHhCCCCCCCEEE--ECCEEEEc
Confidence 3344555555543333332 2356666676532 112356656677899885 35666654
No 325
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=29.52 E-value=44 Score=22.23 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=11.4
Q ss_pred CEEEEeeCCEEEe
Q 030610 160 PTIQVNSNFFVLL 172 (174)
Q Consensus 160 Pt~~~~~~G~~v~ 172 (174)
|++.++++|+.+.
T Consensus 33 P~v~W~kdg~~l~ 45 (101)
T cd05859 33 PQIRWLKDNRTLI 45 (101)
T ss_pred CceEEEECCEECc
Confidence 8899999999865
No 326
>PHA02151 hypothetical protein
Probab=29.09 E-value=35 Score=25.26 Aligned_cols=16 Identities=13% Similarity=0.596 Sum_probs=12.6
Q ss_pred cCCCeEEEEEecCCCH
Q 030610 101 QLDESVIIVWMASWCR 116 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~ 116 (174)
+.+..-.|+||..||.
T Consensus 201 nr~h~~~v~fy~kwct 216 (217)
T PHA02151 201 NRNHDRYVHFYKKWCT 216 (217)
T ss_pred cccCceEEEEehhhcc
Confidence 4455678999999995
No 327
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=27.85 E-value=1.2e+02 Score=18.57 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=34.1
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC----ChHHHHHHcCCCCCCEEEEeeC--CEEEec
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA----VPHKLVARAGVMKMPTIQVNSN--FFVLLT 173 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~l~~~~~v~~~Pt~~~~~~--G~~v~~ 173 (174)
.+|...++.|++..-.+++.. -.+....++... .+ ++.+......+|++.. .+ |..+..
T Consensus 3 ~Ly~~~~~~~~~v~~~l~~~g----l~~~~~~~~~~~~~~~~~-~~~~~~p~~~vP~l~~-~~~~g~~l~e 67 (81)
T cd03048 3 TLYTHGTPNGFKVSIMLEELG----LPYEIHPVDISKGEQKKP-EFLKINPNGRIPAIVD-HNGTPLTVFE 67 (81)
T ss_pred EEEeCCCCChHHHHHHHHHcC----CCcEEEEecCcCCcccCH-HHHHhCcCCCCCEEEe-CCCCceEEEc
Confidence 344444688988877666543 245555666432 23 3555555677999853 32 666554
No 328
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=27.56 E-value=47 Score=21.01 Aligned_cols=13 Identities=38% Similarity=0.243 Sum_probs=11.6
Q ss_pred CEEEEeeCCEEEe
Q 030610 160 PTIQVNSNFFVLL 172 (174)
Q Consensus 160 Pt~~~~~~G~~v~ 172 (174)
|++.+|+||+.+.
T Consensus 13 P~v~W~k~g~~i~ 25 (81)
T cd04971 13 PTLTWYHNGAVLN 25 (81)
T ss_pred CcEEEEECCEECc
Confidence 9999999998775
No 329
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=27.23 E-value=2e+02 Score=19.33 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=32.5
Q ss_pred EEEecCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCChH--HHHHH-cC------CCCCCE-EEEeeCCEEEe
Q 030610 108 IVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH--KLVAR-AG------VMKMPT-IQVNSNFFVLL 172 (174)
Q Consensus 108 V~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~--~l~~~-~~------v~~~Pt-~~~~~~G~~v~ 172 (174)
|.+|-+.+..-..+...=+++..-+. .++.|-.||+..+++ ...++ .+ -.+.|- -.+|.+|+.+.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 34444555556666666666665553 479999999998764 12222 21 123333 25677777654
No 330
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.07 E-value=73 Score=24.68 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=41.0
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHHcCCCCCCEE
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMKMPTI 162 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~l~~~~~v~~~Pt~ 162 (174)
....+-| ++..+...+++|+++|.+ .+.++.=||+..-.++|.++.-+.+|..
T Consensus 79 ~lG~Td~-~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~w 132 (214)
T KOG0324|consen 79 LLGSTDL-TEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSW 132 (214)
T ss_pred EecCCCC-CHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHH
Confidence 3444444 577888899999999976 5888888998766569999988888853
No 331
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=26.97 E-value=1e+02 Score=19.98 Aligned_cols=25 Identities=8% Similarity=-0.024 Sum_probs=19.9
Q ss_pred HHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 149 KLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
..++.|++...+++++..+|.+|.+
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd~ 53 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVDT 53 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEcc
Confidence 4578899977778888899988843
No 332
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=26.94 E-value=1.8e+02 Score=22.46 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=27.0
Q ss_pred HHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEe-eCCEEE
Q 030610 126 EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVN-SNFFVL 171 (174)
Q Consensus 126 ~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~-~~G~~v 171 (174)
.++.+.++..+-| |..+. |.++|+|..+|+++.- .+|+.+
T Consensus 157 ~~~~~~l~~~vYf-----dQ~G~-Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 157 PEMSKALDSRIYF-----DQNGV-LCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred HHHHHHhCCceEE-----cCcch-HHHhcCCeeeceEEEEcCCCCEE
Confidence 5566666444443 55554 9999999999999862 555543
No 333
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.47 E-value=3.2e+02 Score=21.50 Aligned_cols=72 Identities=11% Similarity=0.243 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEE-----ecCCCHhhHhhhHHHHHHHHHhC-CCeEEEEEEccCChH--HHHHHcCCCCCC
Q 030610 89 ESQFDRVIAEAQQLDESVIIVW-----MASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH--KLVARAGVMKMP 160 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F-----~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~--~l~~~~~v~~~P 160 (174)
...+.++.. ....++|-.| |..-|+.|..+.-.++-....++ .++.++.|.-....+ .+.+++|-+ +|
T Consensus 63 ~~sLadLF~---grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmGW~-f~ 138 (247)
T COG4312 63 KKSLADLFG---GRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMGWQ-FP 138 (247)
T ss_pred chhHHHHhC---CCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcCCc-ce
Confidence 456666662 3344444444 34479999999999987766664 368888777544433 345667766 66
Q ss_pred EEEE
Q 030610 161 TIQV 164 (174)
Q Consensus 161 t~~~ 164 (174)
.+-.
T Consensus 139 w~Ss 142 (247)
T COG4312 139 WVSS 142 (247)
T ss_pred eEec
Confidence 5543
No 334
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=26.33 E-value=35 Score=19.48 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=14.2
Q ss_pred CCCHhhHhhhHHHHHHHHHh
Q 030610 113 SWCRKCIYLKPKLEKLAADY 132 (174)
Q Consensus 113 ~wC~~C~~~~p~l~~l~~~~ 132 (174)
=+|.||+.=.+.+.++.+..
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i 36 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKI 36 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHH
T ss_pred CCCCCcHhHHHHHHHHHHHH
Confidence 37999998888887776665
No 335
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.46 E-value=31 Score=26.23 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=37.6
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC----hHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV----PHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
...|+++--+|.+.|.+=.+.+=.|..+ ++...-||.=+. ..++.+---...+|++++ +|..+..
T Consensus 2 ~~~KpiLYSYWrSSCswRVRiALaLK~i------DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~e 70 (217)
T KOG0868|consen 2 SAAKPILYSYWRSSCSWRVRIALALKGI------DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTE 70 (217)
T ss_pred CcccchhhhhhcccchHHHHHHHHHcCC------CcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeeh
Confidence 3568888889999998876655444433 344444443222 112333334567898764 5655543
No 336
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=25.41 E-value=96 Score=26.04 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=33.8
Q ss_pred CHhhHhhhHHH----HHHHHHhCC---CeEEEEEEcc--CChHHHHHHcCCCC-CCEEEEeeCCEEEe
Q 030610 115 CRKCIYLKPKL----EKLAADYHP---RLRFYNVDVN--AVPHKLVARAGVMK-MPTIQVNSNFFVLL 172 (174)
Q Consensus 115 C~~C~~~~p~l----~~l~~~~~~---~v~~~~vd~d--~~~~~l~~~~~v~~-~Pt~~~~~~G~~v~ 172 (174)
||.|....-.+ .++-+.+.+ .++++-+-|- ...+.-...+||.+ -+..++|++|+++.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~ 338 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIK 338 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEee
Confidence 55555443333 344444432 4677766663 22233456688865 45688899999875
No 337
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=25.38 E-value=1.3e+02 Score=18.30 Aligned_cols=56 Identities=9% Similarity=0.028 Sum_probs=32.2
Q ss_pred cCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC--hHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 112 ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV--PHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 112 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
..+|+.|++..=.++...- .+....++.... ..++.+..-...+|++. .+|+.+..
T Consensus 7 ~~~s~~s~~v~~~L~~~gl----~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~--~~g~~l~e 64 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGI----PFEEILVPLYTPDTRARILEFSPTGKVPVLV--DGGIVVWD 64 (73)
T ss_pred CCCCHHHHHHHHHHHHcCC----CCEEEEeCCCCccccHHHHhhCCCCcCCEEE--ECCEEEEc
Confidence 3466777776655554322 455555665431 12355555577899985 36777654
No 338
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=25.17 E-value=1.1e+02 Score=22.27 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhC-----CCeEEEEEE
Q 030610 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-----PRLRFYNVD 142 (174)
Q Consensus 90 ~~f~~~~~~~~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~-----~~v~~~~vd 142 (174)
+.+.+++.+ .++-+|-..+ |...|+.+...+.++..+.. ..+.+..+|
T Consensus 53 ~~l~~~i~~----~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~ 105 (150)
T PF14639_consen 53 ERLKKFIEK----HKPDVIAVGG-NSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVD 105 (150)
T ss_dssp HHHHHHHHH----H--SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE--
T ss_pred HHHHHHHHH----cCCeEEEEcC-CChhHHHHHHHHHHHHHHhhhcccCCCceEEEEC
Confidence 566778843 4444444444 89999999999998887763 245555555
No 339
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.11 E-value=1.5e+02 Score=23.21 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=25.0
Q ss_pred CeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCe
Q 030610 104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRL 136 (174)
Q Consensus 104 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v 136 (174)
+..+-.|.-.=||+|-...+.|+++...+.+.+
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 334444445689999999999999999985544
No 340
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=24.23 E-value=2.8e+02 Score=19.96 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=45.5
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCC--CCEEEEeeCCEEEec
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMK--MPTIQVNSNFFVLLT 173 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~--~Pt~~~~~~G~~v~~ 173 (174)
..+++-.|.+|---|+-|-.....|.+.- .+..+.|+.+..+.-. .+.+..++.. +=++++.++|+....
T Consensus 4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~-~~l~~~~l~~~~~~s~~~~~~g~~~~~ 75 (137)
T COG3011 4 QMKKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQ-ALLEAAGLDPEDVDSVLLVEAGQLLVG 75 (137)
T ss_pred CCCCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhh-hHHhhcCCChhhhheeeEecCCceEec
Confidence 34677778888999999999665555431 2346888777655544 3666666643 235666688876643
No 341
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=24.18 E-value=1.1e+02 Score=19.85 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=19.6
Q ss_pred HHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 149 KLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 149 ~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
..|+.+++...+++.+..+|.+|.
T Consensus 29 K~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 29 KALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHHhCCCCceEEEEecCCCEEc
Confidence 357788998788899999999884
No 342
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=24.17 E-value=2.8e+02 Score=23.07 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=43.6
Q ss_pred cCCCeEEEEEecC-----CCHhhHhhhHHHHHHHHHhC------CCeEEEEEEccCChHHHHHHcCCCCCCEEEEee
Q 030610 101 QLDESVIIVWMAS-----WCRKCIYLKPKLEKLAADYH------PRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNS 166 (174)
Q Consensus 101 ~~~k~vlV~F~a~-----wC~~C~~~~p~l~~l~~~~~------~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~ 166 (174)
.++|.|++-.... ...+-+.+....++.++.++ .++.|+.+|.+.... .-.+.--+.|++++|+
T Consensus 248 ~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~n--qilM~als~P~l~i~N 322 (468)
T KOG4277|consen 248 ASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLAN--QILMAALSEPHLFIFN 322 (468)
T ss_pred cCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHH--HHHHHhhcCCeEEEEe
Confidence 6788888877643 34566777888888888774 368999998765432 1122234679999885
No 343
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=24.08 E-value=1.6e+02 Score=17.10 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=19.9
Q ss_pred ecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC
Q 030610 111 MASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145 (174)
Q Consensus 111 ~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 145 (174)
..=+|+.|.. .+++..... +++.-+.+|...
T Consensus 5 ~~m~C~~C~~---~v~~~l~~~-~GV~~v~vd~~~ 35 (62)
T PF00403_consen 5 PGMTCEGCAK---KVEKALSKL-PGVKSVKVDLET 35 (62)
T ss_dssp ESTTSHHHHH---HHHHHHHTS-TTEEEEEEETTT
T ss_pred CCcccHHHHH---HHHHHHhcC-CCCcEEEEECCC
Confidence 3457999975 445555555 677777777654
No 344
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=23.06 E-value=30 Score=21.35 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=11.5
Q ss_pred EEEccCChHHHHHHcCCC
Q 030610 140 NVDVNAVPHKLVARAGVM 157 (174)
Q Consensus 140 ~vd~d~~~~~l~~~~~v~ 157 (174)
-+|.+.+ ++++++|+.
T Consensus 39 Iidpe~S--eIAkrlgi~ 54 (64)
T COG2093 39 IIDPEKS--EIAKRLGIK 54 (64)
T ss_pred EEcCcHH--HHHHHhCCC
Confidence 3666555 499999985
No 345
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=22.57 E-value=1.7e+02 Score=22.25 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=23.3
Q ss_pred cCCCeEEEEEe-cCCCHhhHhhhHHHHHHHHHhC---CCeEEEEEE
Q 030610 101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH---PRLRFYNVD 142 (174)
Q Consensus 101 ~~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd 142 (174)
-.++.|++.|| ..+---|=...-.+-..+.+++ -.|..+.+|
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D 76 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD 76 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc
Confidence 45799999998 4555555443334444444442 245555555
No 346
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=1.1e+02 Score=22.56 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCHh
Q 030610 89 ESQFDRVIAEAQQLDESVIIVWMASWCRK 117 (174)
Q Consensus 89 ~~~f~~~~~~~~~~~k~vlV~F~a~wC~~ 117 (174)
.+.+...+. +.+|++++.|..-|--+
T Consensus 122 y~~lr~~I~---e~dkp~LilfGTGwGlp 147 (190)
T COG4752 122 YSWLRNEIQ---ERDKPWLILFGTGWGLP 147 (190)
T ss_pred HHHHHHHHh---hcCCcEEEEecCCCCCC
Confidence 345555553 78999999999999754
No 347
>PLN02473 glutathione S-transferase
Probab=21.64 E-value=3.4e+02 Score=20.04 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=36.3
Q ss_pred EEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccC----ChHHHHHHcCCCCCCEEEEeeCCEEEecC
Q 030610 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA----VPHKLVARAGVMKMPTIQVNSNFFVLLTS 174 (174)
Q Consensus 109 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~l~~~~~v~~~Pt~~~~~~G~~v~~~ 174 (174)
.++.+-|+.|++..=.++++. -.+.+..+|..+ .++ +.+..-...+|++. .+|..+..|
T Consensus 5 Ly~~~~s~~~~rv~~~L~e~g----i~ye~~~v~~~~~~~~~~~-~~~~nP~g~vP~L~--~~g~~l~ES 67 (214)
T PLN02473 5 VYGQIKAANPQRVLLCFLEKG----IEFEVIHVDLDKLEQKKPE-HLLRQPFGQVPAIE--DGDLKLFES 67 (214)
T ss_pred EecCCCCCchHHHHHHHHHcC----CCceEEEecCcccccCCHH-HHhhCCCCCCCeEE--ECCEEEEeh
Confidence 444556888887775555532 346666777653 233 55555567899985 477766543
No 348
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.47 E-value=2.7e+02 Score=18.78 Aligned_cols=64 Identities=19% Similarity=0.338 Sum_probs=34.2
Q ss_pred EEEEecC-CCHhhHh------hhHHHHH-HHHHhCC-CeEEEEEEccCChH-----HHHHHcCCC--CCCEEEEeeCCEE
Q 030610 107 IIVWMAS-WCRKCIY------LKPKLEK-LAADYHP-RLRFYNVDVNAVPH-----KLVARAGVM--KMPTIQVNSNFFV 170 (174)
Q Consensus 107 lV~F~a~-wC~~C~~------~~p~l~~-l~~~~~~-~v~~~~vd~d~~~~-----~l~~~~~v~--~~Pt~~~~~~G~~ 170 (174)
++.|+|. -|..|.. ...+|+. +.++|.+ .+++-+||+...+. +++.+-.-. -+|-+ .-+|++
T Consensus 7 l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPli--vvedei 84 (106)
T COG4837 7 LVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLI--VVEDEI 84 (106)
T ss_pred EEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEE--EEcceE
Confidence 3444443 6888864 3344443 3456633 69999999954331 244443333 24543 345555
Q ss_pred Ee
Q 030610 171 LL 172 (174)
Q Consensus 171 v~ 172 (174)
++
T Consensus 85 Va 86 (106)
T COG4837 85 VA 86 (106)
T ss_pred ee
Confidence 54
No 349
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=21.08 E-value=1.3e+02 Score=22.73 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=20.4
Q ss_pred CCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 030610 114 WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (174)
Q Consensus 114 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (174)
-|+.|+. +|.++++ +++++.++..|-...
T Consensus 156 PCGaC~e---wL~KIAe-~np~f~v~mFd~t~c 184 (193)
T PF14421_consen 156 PCGACKE---WLRKIAE-ANPDFRVYMFDDTRC 184 (193)
T ss_pred cchHHHH---HHHHHHH-hCCCeEEEEecCCCc
Confidence 4888876 5566665 668999998876543
No 350
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=20.98 E-value=4e+02 Score=20.64 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=40.0
Q ss_pred cCCCeEEEEEecCCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEe
Q 030610 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLL 172 (174)
Q Consensus 101 ~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~ 172 (174)
..++.-+..=|||++|.--+|...-.++.++ +-++.+..+....-++.-+.--++..+|...+..+|..+.
T Consensus 2 ~rGrLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~ 72 (211)
T PF02702_consen 2 RRGRLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLE 72 (211)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEE
T ss_pred CCccEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEecc
Confidence 4566666666889988777766555554433 3579999998877776445567889999999888887654
No 351
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=20.93 E-value=2.3e+02 Score=19.81 Aligned_cols=49 Identities=16% Similarity=0.460 Sum_probs=32.9
Q ss_pred cCCCHhhHhhhHHHHHHHHH----hCC---CeEEEEEEccCChHHHHHHcCCCCCCEEEE
Q 030610 112 ASWCRKCIYLKPKLEKLAAD----YHP---RLRFYNVDVNAVPHKLVARAGVMKMPTIQV 164 (174)
Q Consensus 112 a~wC~~C~~~~p~l~~l~~~----~~~---~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~ 164 (174)
...|..|..-...|.++.+. +.. .+.+-++.++.. +++..+ -+-|++.+
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~--~~~~~~--~~S~~I~i 67 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE--EFARQP--LESPTIRI 67 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH--HHhhcc--cCCCeeeE
Confidence 34899999877777665554 322 567778877765 367766 55676654
No 352
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.91 E-value=20 Score=28.64 Aligned_cols=11 Identities=36% Similarity=1.099 Sum_probs=7.0
Q ss_pred CCCHhhHhhhH
Q 030610 113 SWCRKCIYLKP 123 (174)
Q Consensus 113 ~wC~~C~~~~p 123 (174)
-||+.||...|
T Consensus 256 y~Cp~CQ~~~~ 266 (269)
T PRK14811 256 HFCPQCQPLRP 266 (269)
T ss_pred EECCCCcCCCC
Confidence 47777776554
No 353
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=20.64 E-value=2.1e+02 Score=17.30 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=26.6
Q ss_pred CCCHhhHhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHHcCCCCCCEEEEeeCCEEEec
Q 030610 113 SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMKMPTIQVNSNFFVLLT 173 (174)
Q Consensus 113 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~l~~~~~v~~~Pt~~~~~~G~~v~~ 173 (174)
++|++|.+..-.+....- .+.+..++.. +.-....+|++.. +|+.+..
T Consensus 15 ~~sp~~~~v~~~L~~~gi----~~~~~~~~~~-------~~~p~g~vPvl~~--~g~~l~e 62 (75)
T cd03080 15 SLSPFCLKVETFLRMAGI----PYENKFGGLA-------KRSPKGKLPFIEL--NGEKIAD 62 (75)
T ss_pred CCCHHHHHHHHHHHHCCC----CcEEeecCcc-------cCCCCCCCCEEEE--CCEEEcC
Confidence 378999988766655432 3333333321 1112356798764 6776654
No 354
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=20.01 E-value=37 Score=24.51 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=11.5
Q ss_pred CCHhhHhhhHHHH
Q 030610 114 WCRKCIYLKPKLE 126 (174)
Q Consensus 114 wC~~C~~~~p~l~ 126 (174)
-|++|+...|.|.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 6999999999884
Done!