Query 030611
Match_columns 174
No_of_seqs 58 out of 60
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 16:21:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4821 Predicted Na+-dependen 99.8 1.2E-20 2.7E-25 162.8 9.5 108 62-169 5-122 (287)
2 PF13593 DUF4137: SBF-like CPA 99.6 1.6E-16 3.4E-21 137.9 3.5 92 80-171 1-100 (313)
3 COG0385 Predicted Na+-dependen 98.3 5.5E-07 1.2E-11 80.5 3.2 98 73-170 3-104 (319)
4 TIGR00832 acr3 arsenical-resis 97.5 4.5E-05 9.8E-10 67.1 1.9 93 78-170 8-110 (328)
5 TIGR00841 bass bile acid trans 93.4 0.068 1.5E-06 46.0 2.9 57 113-169 14-73 (286)
6 COG0798 ACR3 Arsenite efflux p 88.8 0.62 1.3E-05 42.8 4.4 89 81-170 19-118 (342)
7 PF01758 SBF: Sodium Bile acid 88.2 0.54 1.2E-05 37.7 3.2 53 117-169 8-64 (187)
8 PF14898 DUF4491: Domain of un 44.2 13 0.00027 28.8 1.2 45 82-129 6-50 (94)
9 PHA00407 phage lambda Rz1-like 32.9 39 0.00085 25.6 2.3 35 128-162 23-60 (84)
10 PF06168 DUF981: Protein of un 27.6 29 0.00063 29.5 0.9 88 75-167 35-133 (191)
11 KOG4821 Predicted Na+-dependen 26.6 12 0.00026 33.5 -1.5 30 28-59 4-37 (287)
No 1
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=99.83 E-value=1.2e-20 Score=162.76 Aligned_cols=108 Identities=21% Similarity=0.268 Sum_probs=96.8
Q ss_pred hccccccchHHHHHHHHhhhhHHHHHHHHHHHhcCCCC----ceeeeeeeeeeeeEEeEeeecCCccchhHHHHHHhcCc
Q 030611 62 ASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSL----GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWP 137 (174)
Q Consensus 62 ~~~k~~~w~~~v~~F~ikNfLplal~vaivlal~~P~p----G~~~~eysIsy~ava~IFLISGLtLkT~eL~~al~~Wr 137 (174)
.+..+..|.+|+.++..++|+.++...+++.+-+.|+. |+.++||+++|+||++||++|||+|||||+.+|+.|||
T Consensus 5 ~~~~r~i~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~ 84 (287)
T KOG4821|consen 5 YSLIRKIWAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWR 84 (287)
T ss_pred CcchHHHHHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCc
Confidence 34556789999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhHHHH---hcccch-h--hHHHHhH
Q 030611 138 VGIFGLDWLYLAACQQHY---QVEWHL-P--ILLGGIL 169 (174)
Q Consensus 138 a~l~glvsILliTP~ii~---~i~~~p-~--ef~~GLa 169 (174)
.|+|+++++|++||+++| ++...| . |+..||-
T Consensus 85 LhLFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~ 122 (287)
T KOG4821|consen 85 LHLFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLI 122 (287)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhhe
Confidence 999999999999996654 344444 3 7888873
No 2
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=99.62 E-value=1.6e-16 Score=137.85 Aligned_cols=92 Identities=23% Similarity=0.382 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHHHhcCCCCceeeeeee---eeeeeEEeEeeecCCccchhHHHHHHhcCchHHHHHHHHHHHhh---HH
Q 030611 80 NFLPLALIGGVAFGFANPSLGCLADKYQ---LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLDWLYLAAC---QQ 153 (174)
Q Consensus 80 NfLplal~vaivlal~~P~pG~~~~eys---Isy~ava~IFLISGLtLkT~eL~~al~~Wra~l~glvsILliTP---~i 153 (174)
|||++++++++++|+++|.+|...+.++ +..+++++||++||++|+|+|++++++|||.|+++++.+|+++| +.
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988554443 23345999999999999999999999999999999999999999 44
Q ss_pred HHhcc--cchhhHHHHhHhh
Q 030611 154 HYQVE--WHLPILLGGILHL 171 (174)
Q Consensus 154 i~~i~--~~p~ef~~GLa~~ 171 (174)
++++. +.++|+..|+.-+
T Consensus 81 ~~~l~~~~~~~~l~~Gl~~~ 100 (313)
T PF13593_consen 81 LSRLFPAFLPPELALGLLIL 100 (313)
T ss_pred HHHHhhccCCHHHHHHHHHH
Confidence 66666 7899999998754
No 3
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.27 E-value=5.5e-07 Score=80.48 Aligned_cols=98 Identities=17% Similarity=0.079 Sum_probs=75.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhcCCCCceeeeeee-eeeeeEEeEeeecCCccchhHHHHHHhcCchHHHHHHHHHHHhh
Q 030611 73 LLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLDWLYLAAC 151 (174)
Q Consensus 73 v~~F~ikNfLplal~vaivlal~~P~pG~~~~eys-Isy~ava~IFLISGLtLkT~eL~~al~~Wra~l~glvsILliTP 151 (174)
..+++..+++-..++..++++...|..|......+ ..+++.++||+-.|++|+.+|+++.+++||.|+.|+.+-|.+.|
T Consensus 3 ~~~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmP 82 (319)
T COG0385 3 LLRFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMP 82 (319)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 34566666655566666666666666655555543 35889999999999999999999999999999999999999999
Q ss_pred HH---HHhcccchhhHHHHhHh
Q 030611 152 QQ---HYQVEWHLPILLGGILH 170 (174)
Q Consensus 152 ~i---i~~i~~~p~ef~~GLa~ 170 (174)
.+ +-++.-.|+|...|+--
T Consensus 83 lla~~~~~~~~l~~~l~~Gl~l 104 (319)
T COG0385 83 LLALLLAKLFPLPPELAVGLLL 104 (319)
T ss_pred HHHHHHHHHcCCCHHHHHhHHh
Confidence 33 33333379999999854
No 4
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=97.50 E-value=4.5e-05 Score=67.08 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=68.6
Q ss_pred HhhhhHHHHHHHHHHHhcCCCCceeeeeee---ee-eeeEEeEeeecC--CccchhHHHHHHhcCchHHHHHHHHHHHhh
Q 030611 78 ADNFLPLALIGGVAFGFANPSLGCLADKYQ---LS-KFSTFAIFIVSG--LTLRSGEIGAAAEAWPVGIFGLDWLYLAAC 151 (174)
Q Consensus 78 ikNfLplal~vaivlal~~P~pG~~~~eys---Is-y~ava~IFLISG--LtLkT~eL~~al~~Wra~l~glvsILliTP 151 (174)
...|..++.+.++++|+.+|..+....++. +. ..+++.+|+..| ++|+.+|+++.+++||.++.|++.-+.+.|
T Consensus 8 ~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~P 87 (328)
T TIGR00832 8 LTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGP 87 (328)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 346777777888899999999976554432 11 233344455555 999999999999999999999999999999
Q ss_pred HHH---Hhcc-cchhhHHHHhHh
Q 030611 152 QQH---YQVE-WHLPILLGGILH 170 (174)
Q Consensus 152 ~ii---~~i~-~~p~ef~~GLa~ 170 (174)
... .++- -.|+|++.|+--
T Consensus 88 lla~~l~~l~~~~~p~l~~GliL 110 (328)
T TIGR00832 88 FLMFLLAWLFLRDLFEYIAGLIL 110 (328)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 433 3432 247889999753
No 5
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=93.38 E-value=0.068 Score=45.99 Aligned_cols=57 Identities=25% Similarity=0.075 Sum_probs=46.0
Q ss_pred EEeEeeecCCccchhHHHHHHhcCchHHHHHHHHHHHhhHH---HHhcccchhhHHHHhH
Q 030611 113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLDWLYLAACQQ---HYQVEWHLPILLGGIL 169 (174)
Q Consensus 113 va~IFLISGLtLkT~eL~~al~~Wra~l~glvsILliTP~i---i~~i~~~p~ef~~GLa 169 (174)
.+++++..|++|+.+|+++.+++|+.+..++..-+++.|.+ +.++--.++|...|+-
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glv 73 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVL 73 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45667789999999999999999999999999999999933 3333344677777764
No 6
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=88.85 E-value=0.62 Score=42.77 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHhcCCCCceeeeeeeeeeee----EEeEeeec--CCccchhHHHHHHhcCchHHHHHHHHHHHhhHHH
Q 030611 81 FLPLALIGGVAFGFANPSLGCLADKYQLSKFS----TFAIFIVS--GLTLRSGEIGAAAEAWPVGIFGLDWLYLAACQQH 154 (174)
Q Consensus 81 fLplal~vaivlal~~P~pG~~~~eysIsy~a----va~IFLIS--GLtLkT~eL~~al~~Wra~l~glvsILliTP~ii 154 (174)
|..++.++++.+|..+|......++.++...+ +..+..+= =++.+=||++++.++|+..+..+..=..+-|+.+
T Consensus 19 wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm 98 (342)
T COG0798 19 WVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLM 98 (342)
T ss_pred HHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 67889999999999999987777765553322 12222111 2577899999999999999999999899999433
Q ss_pred Hh-----cccchhhHHHHhHh
Q 030611 155 YQ-----VEWHLPILLGGILH 170 (174)
Q Consensus 155 ~~-----i~~~p~ef~~GLa~ 170 (174)
+- ++..| |++.|+--
T Consensus 99 ~~la~~fl~~~p-ey~~GlIL 118 (342)
T COG0798 99 FALAWFFLPDEP-EYRAGLIL 118 (342)
T ss_pred HHHHHHHhCCCH-HHHHHHHH
Confidence 32 25566 99999753
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=88.16 E-value=0.54 Score=37.66 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=39.4
Q ss_pred eeecCCccchhHHHHHHhcCchHHHHHHHHHHHhhHHHH----hcccchhhHHHHhH
Q 030611 117 FIVSGLTLRSGEIGAAAEAWPVGIFGLDWLYLAACQQHY----QVEWHLPILLGGIL 169 (174)
Q Consensus 117 FLISGLtLkT~eL~~al~~Wra~l~glvsILliTP~ii~----~i~~~p~ef~~GLa 169 (174)
-+..|++++-||+++..++++..+.|++.-+++.|...+ .+--.+++.+.|+.
T Consensus 8 mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~ 64 (187)
T PF01758_consen 8 MFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLL 64 (187)
T ss_dssp HHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345799999999999999999999999999999994333 33344677777764
No 8
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=44.17 E-value=13 Score=28.80 Aligned_cols=45 Identities=13% Similarity=0.362 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHhcCCCCceeeeeeeeeeeeEEeEeeecCCccchhHH
Q 030611 82 LPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEI 129 (174)
Q Consensus 82 Lplal~vaivlal~~P~pG~~~~eysIsy~ava~IFLISGLtLkT~eL 129 (174)
+.+|++.++++|+.-| ..+..||..++- .-.+|++.|+-.-...+
T Consensus 6 iiigi~tFliIG~fHp--iVIk~EYyfg~~-~W~~FL~~Gi~~~~~Sl 50 (94)
T PF14898_consen 6 IIIGIATFLIIGLFHP--IVIKGEYYFGTR-IWPIFLLAGIACIIASL 50 (94)
T ss_pred HHHHHHHHHHHHccCe--EEEEEEEecCCC-cHHHHHHHHHHHHHHHH
Confidence 4688999999999987 678899999874 67789999886544443
No 9
>PHA00407 phage lambda Rz1-like protein
Probab=32.86 E-value=39 Score=25.63 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=27.3
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhh---HHHHhcccchh
Q 030611 128 EIGAAAEAWPVGIFGLDWLYLAAC---QQHYQVEWHLP 162 (174)
Q Consensus 128 eL~~al~~Wra~l~glvsILliTP---~ii~~i~~~p~ 162 (174)
..++.+..|++.+.|+..|...|- +--.++|-+|.
T Consensus 23 stkktl~rwkaaLIGlllicv~tISGCaSes~lp~ep~ 60 (84)
T PHA00407 23 STKKTLRRWKAALIGLLLICVATISGCASESNLPVEPQ 60 (84)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhcccCCCCcc
Confidence 356788999999999999998884 56667766554
No 10
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=27.64 E-value=29 Score=29.49 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=52.5
Q ss_pred HHHHhhhhHHHHHHHHHH-------HhcCCCCceeeeeeeee----eeeEEeEeeecCCccchhHHHHHHhcCchHHHHH
Q 030611 75 KIAADNFLPLALIGGVAF-------GFANPSLGCLADKYQLS----KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGL 143 (174)
Q Consensus 75 ~F~ikNfLplal~vaivl-------al~~P~pG~~~~eysIs----y~ava~IFLISGLtLkT~eL~~al~~Wra~l~gl 143 (174)
+-..|.|-|...++++.. -+.||-|| .|.|- +.---++++..|+.+..+.= =..-.|.+.+.|+
T Consensus 35 ~~~~~~~~~~f~~lG~~~litGl~~~~TWPLPg----sYNIlFgd~~~lfGv~lL~~~~~l~~~~~-L~~~~~~~~flGl 109 (191)
T PF06168_consen 35 RSLNRSWAPFFGALGLFALITGLWGTFTWPLPG----SYNILFGDPWLLFGVLLLSAGLALYRGWD-LRPLGIFALFLGL 109 (191)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHheeeecCCC----cccchHhhhHHHHHHHHHHHHHHHHcCch-HHHHHHHHHHHHH
Confidence 456666777664554433 36899999 44552 22222345566666655421 1123577888888
Q ss_pred HHHHHHhhHHHHhcccchhhHHHH
Q 030611 144 DWLYLAACQQHYQVEWHLPILLGG 167 (174)
Q Consensus 144 vsILliTP~ii~~i~~~p~ef~~G 167 (174)
..|-.---..-+++.-+|.+.+-|
T Consensus 110 ~~ivygv~i~~~gLT~~P~la~lg 133 (191)
T PF06168_consen 110 ILIVYGVAIYNFGLTREPLLAALG 133 (191)
T ss_pred HHHHHHHHHHHcCCCcCcHHHHHH
Confidence 777766667777787778755443
No 11
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=26.60 E-value=12 Score=33.49 Aligned_cols=30 Identities=7% Similarity=-0.261 Sum_probs=25.2
Q ss_pred CCCCccccCcccccC--C--CCcccccccccCCCch
Q 030611 28 RASGSLRFSPFVTFS--P--GRSISRPIRACRPSDQ 59 (174)
Q Consensus 28 ~~~~~~~~~~~~~~~--p--~~~~~~~i~a~~~s~q 59 (174)
+.+++++ ...++| | ++|+.+.|++|+.+|+
T Consensus 4 ~~~~~r~--i~~~R~~e~~~~~Wf~~~I~~~i~~aK 37 (287)
T KOG4821|consen 4 QYSLIRK--IWAHRVTEFLKSQWFFICIAILIVIAK 37 (287)
T ss_pred CCcchHH--HHHHHHHHHHhcchHHHHHHHhhhHhh
Confidence 3677777 777777 4 9999999999999998
Done!