Query 030611
Match_columns 174
No_of_seqs 58 out of 60
Neff 3.5
Searched_HMMs 13730
Date Tue Mar 26 02:47:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030611.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030611hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b7ca1 d.17.4.16 (A:1-121) Un 15.8 19 0.0014 22.6 0.6 17 124-140 1-17 (121)
2 d1kq1a_ b.38.1.2 (A:) Pleiotro 10.4 43 0.0031 21.2 1.0 14 113-126 16-29 (60)
3 d1u1sa1 b.38.1.2 (A:6-71) Plei 9.2 50 0.0037 21.3 1.0 14 113-126 16-29 (66)
4 d1xhna1 b.45.1.1 (A:13-182) Ce 5.3 93 0.0068 22.0 0.9 18 115-132 55-72 (170)
5 d2e74d2 f.23.12.1 (D:12-45) IS 5.2 1.1E+02 0.0079 17.3 1.0 19 80-98 9-27 (34)
6 d1b3ta_ d.58.8.1 (A:) Epstein 5.1 2E+02 0.015 20.8 2.7 33 97-135 89-121 (147)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 4.5 2.2E+02 0.016 15.6 2.0 13 82-94 14-26 (32)
8 d2bz2a1 d.58.7.1 (A:35-113) Ne 3.7 2.5E+02 0.018 16.4 2.0 19 119-137 10-28 (79)
9 d1d1ra_ d.64.1.1 (A:) YciH {Es 3.7 1.9E+02 0.014 18.5 1.4 20 118-137 22-41 (83)
10 d1rm4a2 d.81.1.1 (A:149-312) G 3.4 5.8E+02 0.042 17.9 4.1 48 88-135 61-112 (163)
No 1
>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]}
Probab=15.77 E-value=19 Score=22.55 Aligned_cols=17 Identities=6% Similarity=-0.005 Sum_probs=13.6
Q ss_pred cchhHHHHHHhcCchHH
Q 030611 124 LRSGEIGAAAEAWPVGI 140 (174)
Q Consensus 124 LkT~eL~~al~~Wra~l 140 (174)
|+|+||.+++++|...+
T Consensus 1 m~~~eI~~~i~~~~~A~ 17 (121)
T d3b7ca1 1 MPTDDIVQLLKGQEEAW 17 (121)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 67899999998887543
No 2
>d1kq1a_ b.38.1.2 (A:) Pleiotropic translational regulator Hfq {Staphylococcus aureus [TaxId: 1280]}
Probab=10.43 E-value=43 Score=21.20 Aligned_cols=14 Identities=14% Similarity=0.688 Sum_probs=11.3
Q ss_pred EEeEeeecCCccch
Q 030611 113 TFAIFIVSGLTLRS 126 (174)
Q Consensus 113 va~IFLISGLtLkT 126 (174)
-+.|||++|.+|+-
T Consensus 16 ~VtifL~nGvkl~G 29 (60)
T d1kq1a_ 16 EVTVFFLNGFQMKG 29 (60)
T ss_dssp EEEEEETTSCEEEE
T ss_pred cEEEEEECCcEEEE
Confidence 46799999998863
No 3
>d1u1sa1 b.38.1.2 (A:6-71) Pleiotropic translational regulator Hfq {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.24 E-value=50 Score=21.27 Aligned_cols=14 Identities=29% Similarity=0.783 Sum_probs=11.1
Q ss_pred EEeEeeecCCccch
Q 030611 113 TFAIFIVSGLTLRS 126 (174)
Q Consensus 113 va~IFLISGLtLkT 126 (174)
-+.|||++|.+|+-
T Consensus 16 ~VtifL~nGvkl~G 29 (66)
T d1u1sa1 16 PVSIYLVNGIKLQG 29 (66)
T ss_dssp CEEEEETTSCEEEE
T ss_pred cEEEEEEcCcEEEE
Confidence 35699999998863
No 4
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.32 E-value=93 Score=22.05 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=16.1
Q ss_pred eEeeecCCccchhHHHHH
Q 030611 115 AIFIVSGLTLRSGEIGAA 132 (174)
Q Consensus 115 ~IFLISGLtLkT~eL~~a 132 (174)
-+|++|+|...|++|.++
T Consensus 55 P~~llS~la~ht~Nl~~~ 72 (170)
T d1xhna1 55 PYFYLSPLQLSVSNLQEN 72 (170)
T ss_dssp CEEEECTTSHHHHHHHHC
T ss_pred EEEEEcChhHhHHHHhhC
Confidence 589999999999999875
No 5
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.21 E-value=1.1e+02 Score=17.32 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHhcCCC
Q 030611 80 NFLPLALIGGVAFGFANPS 98 (174)
Q Consensus 80 NfLplal~vaivlal~~P~ 98 (174)
|.|-.|-+.++++|-++|.
T Consensus 9 nlltfgt~tg~alg~lypv 27 (34)
T d2e74d2 9 NLLAFGTVTGVALGALYPL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhhhhhH
Confidence 6677888899999998884
No 6
>d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
Probab=5.07 E-value=2e+02 Score=20.80 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCCceeeeeeeeeeeeEEeEeeecCCccchhHHHHHHhc
Q 030611 97 PSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEA 135 (174)
Q Consensus 97 P~pG~~~~eysIsy~ava~IFLISGLtLkT~eL~~al~~ 135 (174)
|.||-++. +..|-+++|+..++ --|.+++|++.
T Consensus 89 PqPgPl~E----S~~~yFlvFlqt~~--fAe~~kDAi~D 121 (147)
T d1b3ta_ 89 PQPGPLRE----SIVCYFMVFLQTHI--FAEVLKDAIKD 121 (147)
T ss_dssp CCCCTTCE----EEEEEEEEEESCHH--HHHHHHHHHHH
T ss_pred CCCCcchh----heeeeeeeeeehhH--HHHHHHHHHHH
Confidence 55566654 45677899998875 56888888764
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.53 E-value=2.2e+02 Score=15.62 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHh
Q 030611 82 LPLALIGGVAFGF 94 (174)
Q Consensus 82 Lplal~vaivlal 94 (174)
|+.|..+++++|.
T Consensus 14 lffgiavgiifai 26 (32)
T d2e74e1 14 LFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhheeeE
Confidence 3445555555553
No 8
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.74 E-value=2.5e+02 Score=16.37 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=15.4
Q ss_pred ecCCccchhHHHHHHhcCc
Q 030611 119 VSGLTLRSGEIGAAAEAWP 137 (174)
Q Consensus 119 ISGLtLkT~eL~~al~~Wr 137 (174)
++|+.+..+||++..+.+-
T Consensus 10 V~~~~~te~~L~~~F~~~G 28 (79)
T d2bz2a1 10 VYGEDMTPTLLRGAFSPFG 28 (79)
T ss_dssp EECSSCCHHHHHHHHSTTC
T ss_pred EECCCCCHHHHHHHHhccC
Confidence 4689999999999887663
No 9
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
Probab=3.66 E-value=1.9e+02 Score=18.45 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=15.8
Q ss_pred eecCCccchhHHHHHHhcCc
Q 030611 118 IVSGLTLRSGEIGAAAEAWP 137 (174)
Q Consensus 118 LISGLtLkT~eL~~al~~Wr 137 (174)
+|+||.+...|+.+-++.++
T Consensus 22 ~I~Gl~~~~~dlk~l~k~lK 41 (83)
T d1d1ra_ 22 LITGVDLDDAELTKLAAELK 41 (83)
T ss_dssp EEECCCSCHHHHHHHHHHHT
T ss_pred EEECCcCCHHHHHHHHHHHH
Confidence 46999999888888776655
No 10
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=3.35 E-value=5.8e+02 Score=17.88 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCC-ceeeee-ee--eeeeeEEeEeeecCCccchhHHHHHHhc
Q 030611 88 GGVAFGFANPSL-GCLADK-YQ--LSKFSTFAIFIVSGLTLRSGEIGAAAEA 135 (174)
Q Consensus 88 vaivlal~~P~p-G~~~~e-ys--Isy~ava~IFLISGLtLkT~eL~~al~~ 135 (174)
.+=+++...|.. |++-+. +. +.-++++=.-+...=....+|+.++++.
T Consensus 61 a~kai~~vlP~L~gki~g~a~RVPt~nvS~vDl~~~l~k~~t~eein~~~~~ 112 (163)
T d1rm4a2 61 AAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 112 (163)
T ss_dssp HHHHHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCcceEEEecCCCCceeEEEEEeccCCCCHHHHHHHHHH
Confidence 344567778888 776444 33 3666777777777888888999988853
Done!