BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030613
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 200 bits (509), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 92/107 (85%), Positives = 103/107 (96%)
Query: 65 SSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQL 124
+S+GSRLE++VKKTV+ENPVVVYSKTWCSYSSEVK LFKRL V+PLV+ELDE+G QGPQ+
Sbjct: 1 ASFGSRLEDAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQI 60
Query: 125 QKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEAKS 171
QK+LERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEA +
Sbjct: 61 QKVLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 186 bits (471), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 82/105 (78%), Positives = 99/105 (94%)
Query: 65 SSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQL 124
+S+GSR+EES++KTV+EN VV+YSKTWCSY +EVK LFKRLGV+PLV+ELD++GPQGPQL
Sbjct: 2 ASFGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQL 61
Query: 125 QKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEA 169
QK+LERLTGQHTVPNVF+ GKHIGGCTDTVKL RKG+LE +L+EA
Sbjct: 62 QKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 106
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 76 KKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQH 135
K+ S PVVV+SKT+C Y + VK L ++G V+ELDE+ G QLQ L TG+
Sbjct: 14 KELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDEL-SDGSQLQSALAHWTGRG 72
Query: 136 TVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEAKS 171
TVPNVFIGGK IGGC V+ +++ EL PLL +A +
Sbjct: 73 TVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 108
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT 132
+ K+ S PVVV+SKT+C Y + VK L ++G V+ELDE+ G QLQ L T
Sbjct: 12 KKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDEL-SDGSQLQSALAHWT 70
Query: 133 GQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEAKS 171
G+ TVPNVFIGGK IGGC V+ +++ EL PLL +A +
Sbjct: 71 GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 109
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
Query: 61 QAMASSYGSRLEE-------SVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE 113
Q+M S+ S LE +++T+S+N VV++SKT CSY + K LF + V V+E
Sbjct: 21 QSMESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVE 80
Query: 114 LDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEA 169
LD + G Q Q L ++TG+ TVP +F+ G IGG TDT +L+++G+L PL+ +
Sbjct: 81 LDLL-EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 135
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134
+++T+S+N VV++SKT CSY + K LF + V V+ELD + G Q Q L ++TG+
Sbjct: 28 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLL-EYGNQFQDALYKMTGE 86
Query: 135 HTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEA 169
TVP +F+ G IGG TDT +L+++G+L PL+ +
Sbjct: 87 RTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 121
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134
+++T+S+N VV++SKT CSY + K LF + V V+ELD + G Q Q L ++TG+
Sbjct: 20 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLL-EYGNQFQDALYKMTGE 78
Query: 135 HTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEA 169
TVP +F+ G IGG TDT +L+++G+L PL+ +
Sbjct: 79 RTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 113
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 65/98 (66%), Gaps = 3/98 (3%)
Query: 79 VSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP 138
+ + VV++SK++C +S+ VK LF LGVE V+ELD++ G ++Q++L +T Q TVP
Sbjct: 14 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDD-GARVQEVLSEITNQKTVP 72
Query: 139 NVFIGGKHIGGCTDTVKLYRKGELEPLLSE--AKSAEN 174
N+F+ H+GGC T + Y+ G L+ LL E A AEN
Sbjct: 73 NIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDLAYDAEN 110
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Query: 75 VKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLER 130
VK + + V V +KT+C YS + + LF+ L V + LV+ELDEM G ++Q LE
Sbjct: 13 VKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMS-NGSEIQDALEE 71
Query: 131 LTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLL 166
++GQ TVPNV+I GKHIGG +D L + G+L +L
Sbjct: 72 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 107
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
Query: 75 VKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLER 130
VK + + V V +KT+C Y + + LF+ L V + LV+ELDEM G ++Q LE
Sbjct: 10 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMS-NGSEIQDALEE 68
Query: 131 LTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLL 166
++GQ TVPNV+I GKHIGG +D L + G+L +L
Sbjct: 69 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 104
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
Query: 75 VKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLER 130
VK + + V V +KT+C Y + + LF+ L V + LV+ELDEM G ++Q LE
Sbjct: 30 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMS-NGSEIQDALEE 88
Query: 131 LTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLL 166
++GQ TVPNV+I GKHIGG +D L + G+L +L
Sbjct: 89 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 5/82 (6%)
Query: 75 VKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLER 130
VK ++EN + V SKT+C YS + + LF++L V + LV++L++M +G +Q L
Sbjct: 10 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDM-KEGADIQAALYE 68
Query: 131 LTGQHTVPNVFIGGKHIGGCTD 152
+ GQ TVPN++I GKHIGG D
Sbjct: 69 INGQRTVPNIYINGKHIGGNDD 90
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLL 128
+ VK ++EN + V SKT+C YS + + LF++L V + LV++L++M +G +Q L
Sbjct: 252 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDM-KEGADIQAAL 310
Query: 129 ERLTGQHTVPNVFIGGKHIGGCTD 152
+ GQ TVPN++I GKHIGG D
Sbjct: 311 YEINGQRTVPNIYINGKHIGGNDD 334
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLL 128
+ VK ++EN + V SKT+C Y + + LF++L V + LV++L++M +G +Q L
Sbjct: 16 KHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDM-KEGADIQAAL 74
Query: 129 ERLTGQHTVPNVFIGGKHIGGCTD 152
+ GQ TVPN++I GKHIGG D
Sbjct: 75 YEINGQRTVPNIYINGKHIGGNDD 98
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 62.0 bits (149), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134
++KTV V+++SKT C Y +VK + ++ IELD++ G +QK L +
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLS-NGSAIQKCLASFSKI 69
Query: 135 HTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEAK 170
TVP +F+ GK IG +K Y EL +++E+K
Sbjct: 70 ETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 61.6 bits (148), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134
++KTV V+++SKT C Y +VK + ++ IELD++ G +QK L +
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLS-NGSAIQKCLASFSKI 69
Query: 135 HTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEAK 170
TVP +F+ GK IG +K Y EL +++E+K
Sbjct: 70 ETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 61.6 bits (148), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ 134
++KTV V+++SKT C Y +VK + ++ IELD++ G +QK L +
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLS-NGSAIQKCLASFSKI 69
Query: 135 HTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEAK 170
TVP +F+ GK IG +K Y EL +++E+K
Sbjct: 70 ETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143
V++Y++ C Y + K L R G E E+D P+L+ ++ +G++T P +FIG
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAE--FNEIDASAT--PELRAEMQERSGRNTFPQIFIG 63
Query: 144 GKHIGGCTDTVKLYRKGELEPLLSEAK 170
H+GGC D L +G+L+ LL K
Sbjct: 64 SVHVGGCDDLYALEDEGKLDSLLKTGK 90
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGP--QGPQLQKLLE 129
+E V + VVV+ K C Y + + +L ++ ++E ++ ++Q L+
Sbjct: 3 QEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQ 62
Query: 130 RLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGEL 162
+LTG TVP VFIG IGGC+D V L + GEL
Sbjct: 63 QLTGARTVPRVFIGKDCIGGCSDLVSLQQSGEL 95
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGP--QGPQLQKLLE 129
+E V + VVV+ K C YS + + +L ++ ++E ++ ++Q L+
Sbjct: 2 QEFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQ 61
Query: 130 RLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGEL 162
+LTG TVP VFIG IGG +D V L + GEL
Sbjct: 62 QLTGARTVPRVFIGKDSIGGSSDLVSLQQSGEL 94
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGP--QLQKLLERLT 132
V + VVV+ K C + + + L +L + ++E ++ ++Q L++LT
Sbjct: 5 VNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLT 64
Query: 133 GQHTVPNVFIGGKHIGGCTDTVKLYRKGEL 162
G TVP VFIG + IGGCTD ++++GEL
Sbjct: 65 GARTVPRVFIGKECIGGCTDLESMHKRGEL 94
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143
+++Y++ C Y + L + GV+ I+ Q++++R G++T P +FIG
Sbjct: 8 IILYTRPNCPYCKRARDLLDKKGVKYTDID-----ASTSLRQEMVQRANGRNTFPQIFIG 62
Query: 144 GKHIGGCTDTVKLYRKGELEPLLSE 168
H+GGC D L KG+L+ LL +
Sbjct: 63 DYHVGGCDDLYALENKGKLDSLLQD 87
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 83 PVVVYSKTWCSYSSEVK-LLFKRLGVEP--LVIELDEMGPQGPQLQKLLERLTGQHTVPN 139
P++++SK+ CSYS K LL P +IELD+ G G +LQ+ ++ +TG+ TVPN
Sbjct: 15 PIIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHG-HGEELQEYIKLVTGRGTVPN 73
Query: 140 VFIGGKHIGGCTDTVKLYRKGEL 162
+ + G GG + KL+ +G+L
Sbjct: 74 LLVNGVSRGGNEEIKKLHTQGKL 96
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143
V +Y+K C YS K L GV + +D + +++++R +G+ TVP +FI
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPID---GNAAKREEMIKR-SGRTTVPQIFID 58
Query: 144 GKHIGGCTDTVKLYRKGELEPLL 166
+HIGG D L +G L+PLL
Sbjct: 59 AQHIGGYDDLYALDARGGLDPLL 81
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 72 EESVKKTVSENPVVVYSKTWCSYSSEV-----KLLFKRLGVEPLVIELDEMGPQGPQLQK 126
EE V++ ++ N V ++ K C + K FKR E ++++ E P+ +L+
Sbjct: 9 EEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYE--IVDIKEFKPEN-ELRD 65
Query: 127 LLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLS 167
E++TG TVP +F G IGG +D +++ L +LS
Sbjct: 66 YFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILS 106
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 73 ESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKL 127
E +++ ++ENP+++Y K C +S++ G +++ Q P ++
Sbjct: 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDI----LQNPDIRAE 61
Query: 128 LERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSE 168
L + T P +++ G+ +GGC +++Y++GEL+ L+ E
Sbjct: 62 LPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 102
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 73 ESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKL 127
E +++ ++ENP+++Y K C +S++ G +++ Q P ++
Sbjct: 26 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDIL----QNPDIRAE 81
Query: 128 LERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSE 168
L + T P +++ G+ +GGC +++Y++GEL+ L+ E
Sbjct: 82 LPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 122
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143
V +Y+K C Y K L GV + +D + +++++R +G+ TVP +FI
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPID---GNAAKREEMIKR-SGRTTVPQIFID 58
Query: 144 GKHIGGCTDTVKLYRKGELEPLL 166
+HIGG D L +G L+PLL
Sbjct: 59 AQHIGGYDDLYALDARGGLDPLL 81
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 72 EESVKKTVSENPVVVYSKT---WCSYSSEV--KLLFKRLGVEPLVIELDEMGPQGPQLQK 126
EE V++ ++ N V ++ K +C + ++ K FKR E ++++ E P+ +L+
Sbjct: 9 EEFVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYE--IVDIKEFKPEN-ELRD 65
Query: 127 LLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLS 167
E++TG TVP +F G IGG +D +++ L +LS
Sbjct: 66 YFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILS 106
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 65 SSYGSRLEESVKKTVSENPVVVYSKT-----WCSYSSEVKLLFKRLGV--EPLVIELDEM 117
S+ +L+++++K V+ VV++ K C +S+ V + K L V E + I +EM
Sbjct: 1 SALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEM 60
Query: 118 GPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEA 169
QG L+ + T P ++IGG+ GGC T++ ++ GEL+ + +A
Sbjct: 61 LRQG------LKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKA 106
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143
+ +Y+ + C + L KR GVE +D + + R G+ ++P +FI
Sbjct: 18 IEIYTWSTCPFCMRALALLKRKGVEFQEYCID---GDNEAREAMAARANGKRSLPQIFID 74
Query: 144 GKHIGGCTDTVKLYRKGELEPLL 166
+HIGGC D L G+L+PLL
Sbjct: 75 DQHIGGCDDIYALDGAGKLDPLL 97
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 69 SRLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQ 123
+ + ++++ + PVV++ K C +S L GV+P + + P+
Sbjct: 3 TEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNV-LEDPE 61
Query: 124 LQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEAKS 171
L++ ++ + T+P +++ + IGGC + R GEL LL EA++
Sbjct: 62 LREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQA 109
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 71 LEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGV--EPLVIELDEMGPQGPQ 123
L+ ++ K V+ + VV++ K C +S V + K L E + I +E+ QG
Sbjct: 7 LKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENELLRQG-- 64
Query: 124 LQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEA 169
L+ + T P ++I G+ GGC TV+ Y+ GEL+ + +A
Sbjct: 65 ----LKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQEQVEKA 106
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 84 VVVYSKTWCSYSSEVKLLF--KRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141
+ +++K C + ++ K L K L E +++ D + ++G+ TVP VF
Sbjct: 172 ISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVS-------VRAVSGRTTVPQVF 224
Query: 142 IGGKHIGGCTDTVKLY 157
IGGKHIGG D K +
Sbjct: 225 IGGKHIGGSDDLEKYF 240
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 73 ESVKKTVSENPVVVYSKT-----WCSYSSEVKLLFKRLGVEPLVIE--LDEMGPQGPQLQ 125
E + V ++ VVV+ K C +S+ V + + GV LD+ P+L+
Sbjct: 11 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDD-----PELR 65
Query: 126 KLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGEL 162
+ ++ + T+P V++ G+ +GGC +++++ G+L
Sbjct: 66 QGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 102
>pdb|1QFN|A Chain A, Glutaredoxin-1-Ribonucleotide Reductase B1 Mixed Disulfide
Bond
pdb|1GRX|A Chain A, Structure Of E. Coli Glutaredoxin
Length = 85
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQK-LLERLTGQ--HTVPNVF 141
V++ ++ C YS K L ++L E + + + + K L++ G+ TVP +F
Sbjct: 4 VIFGRSGCPYSVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF 63
Query: 142 IGGKHIGGCTD 152
+ +HIGG TD
Sbjct: 64 VDQQHIGGYTD 74
>pdb|3IC4|A Chain A, The Crystal Structure Of The Glutaredoxin(Grx-1) From
Archaeoglobus Fulgidus
Length = 92
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER---LTGQHTVPNV 140
V+ Y + C + KR GV+ VI +D++ +G + +K++E+ ++G ++VP V
Sbjct: 14 VLXYGLSTCPHCKRTLEFLKREGVDFEVIWIDKL--EGEERKKVIEKVHSISGSYSVPVV 71
Query: 141 FIGGKHIGG 149
G KH+ G
Sbjct: 72 VKGDKHVLG 80
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 66 SYGSRLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIEL--DEMG 118
S +LEE +K ++ V+++ K C +S ++ + GVE ++ DE
Sbjct: 1 SMAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEV 60
Query: 119 PQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLL 166
QG L+ + T P +++ G+ +GG +L GEL P+L
Sbjct: 61 RQG------LKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPIL 102
>pdb|3F0I|A Chain A, Arsenate Reductase From Vibrio Cholerae.
pdb|3F0I|B Chain B, Arsenate Reductase From Vibrio Cholerae
Length = 119
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131
VV+Y CS S E L + G+ P VI+ E P +L++L ++L
Sbjct: 6 VVIYHNPKCSKSRETLALLENQGIAPQVIKYLETSPSVEELKRLYQQL 53
>pdb|1EGO|A Chain A, Nmr Structure Of Oxidized Escherichia Coli Glutaredoxin:
Comparison With Reduced E. Coli Glutaredoxin And
Functionally Related Proteins
pdb|1EGR|A Chain A, Sequence-Specific 1h N.M.R. Assignments And Determination
Of The Three-Dimensional Structure Of Reduced
Escherichia Coli Glutaredoxin
Length = 85
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQK-LLERLTGQ--HTVPNVF 141
V++ ++ C Y K L ++L E + + + + K L++ G+ TVP +F
Sbjct: 4 VIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF 63
Query: 142 IGGKHIGGCTD 152
+ +HIGG TD
Sbjct: 64 VDQQHIGGYTD 74
>pdb|1Y0L|L Chain L, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|A Chain A, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|C Chain C, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|E Chain E, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y18|L Chain L, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|A Chain A, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|C Chain C, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|E Chain E, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|3CFJ|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFK|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|G Chain G, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|J Chain J, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|M Chain M, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|O Chain O, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
Length = 216
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 7 LTQFTSLSLNPSRSLSHIPTSNPGLVTANNYYTFSSR------TSLSVNGRRRRYGAVSV 60
+TQ ++L+ +P +++ S+ G VT +NY T+ T L + G +R V
Sbjct: 4 VTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGL-IGGTNKRAPGVPA 62
Query: 61 QAMASSYGSRLEESVKKTVSENPVVVYSKTWCS----YSSEVKLLFKRLGVEPLVI 112
+ S G R ++ +E+ + + W S + KL KR P V
Sbjct: 63 RFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVF 118
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 30.0 bits (66), Expect = 0.75, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 97 EVKLLFKRLGVEPLVIELD-----EMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCT 151
E +F LG +P EL ++GP+G L E L Q +VPNV+ G IGG
Sbjct: 304 ETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVN--EYL--QTSVPNVYAVGDLIGGPM 359
Query: 152 DTVKLYRKG 160
+ K + G
Sbjct: 360 EMFKARKSG 368
>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From
Synechococcus Sp
Length = 106
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK 145
+Y WC + + K LF + +E GP PQ Q+ E G + P I G+
Sbjct: 18 MYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTE--AGITSYPTWIINGR 75
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 92 CSYSSEVKLLFKRLGVEPLVIEL--DEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGG 149
C +S ++ + GVE ++ DE QG L+ + T P +++ G +GG
Sbjct: 30 CGFSKQILEILNSTGVEYETFDILEDEEVRQG------LKTFSNWPTYPQLYVRGDLVGG 83
Query: 150 CTDTVKLYRKGELEPLL 166
+L GEL P+L
Sbjct: 84 LDIVKELKDNGELLPIL 100
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 17/79 (21%)
Query: 84 VVVYSKTWCSYSSEVKLLFKR--LGVEPLVIE--------LDEMGPQGPQLQKLLERLTG 133
V +Y++ C Y K F+ + + +I+ DE G K++ ++
Sbjct: 6 VKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEXNQSG----KVIFPIS- 60
Query: 134 QHTVPNVFIGGKHIGGCTD 152
TVP +FI +HIGG T+
Sbjct: 61 --TVPQIFIDDEHIGGFTE 77
>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide
Reductase
Length = 291
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK 145
+Y WC + + K LF + +E GP PQ Q+ E G + P I G+
Sbjct: 203 MYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTE--AGITSYPTWIINGR 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,863,776
Number of Sequences: 62578
Number of extensions: 181814
Number of successful extensions: 445
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 82
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)