Query 030613
Match_columns 174
No_of_seqs 204 out of 1164
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 16:23:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 5E-30 1.1E-34 181.8 11.3 97 76-173 2-98 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 6E-29 1.3E-33 178.9 13.1 101 72-173 3-106 (108)
3 PRK10824 glutaredoxin-4; Provi 100.0 5E-29 1.1E-33 180.7 12.6 99 70-172 3-106 (115)
4 KOG1752 Glutaredoxin and relat 100.0 1.5E-28 3.2E-33 175.1 12.6 102 71-173 3-104 (104)
5 TIGR00365 monothiol glutaredox 99.9 2.1E-26 4.4E-31 162.7 11.4 91 72-166 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.9 1.6E-24 3.5E-29 150.8 10.0 85 75-163 1-90 (90)
7 PTZ00062 glutaredoxin; Provisi 99.9 1.2E-23 2.6E-28 166.5 12.5 97 68-168 99-200 (204)
8 COG0278 Glutaredoxin-related p 99.9 2.8E-23 6.1E-28 144.7 10.7 97 70-170 3-105 (105)
9 PRK10638 glutaredoxin 3; Provi 99.9 7E-23 1.5E-27 140.2 10.9 82 82-167 2-83 (83)
10 TIGR02181 GRX_bact Glutaredoxi 99.9 1.3E-22 2.7E-27 137.3 10.0 79 84-166 1-79 (79)
11 TIGR02180 GRX_euk Glutaredoxin 99.9 6.6E-22 1.4E-26 134.3 10.0 82 84-166 1-84 (84)
12 COG0695 GrxC Glutaredoxin and 99.9 6.7E-22 1.5E-26 135.0 9.4 78 83-162 2-79 (80)
13 cd03419 GRX_GRXh_1_2_like Glut 99.9 2.9E-21 6.2E-26 130.8 9.6 81 83-164 1-81 (82)
14 cd03031 GRX_GRX_like Glutaredo 99.9 3.9E-21 8.4E-26 145.1 11.0 83 83-169 1-93 (147)
15 cd03418 GRX_GRXb_1_3_like Glut 99.8 1.2E-20 2.6E-25 125.9 10.0 74 83-160 1-75 (75)
16 cd03027 GRX_DEP Glutaredoxin ( 99.8 1.9E-20 4.2E-25 124.9 9.2 71 83-157 2-72 (73)
17 TIGR02190 GlrX-dom Glutaredoxi 99.8 6.2E-20 1.3E-24 124.6 9.3 75 78-157 4-78 (79)
18 cd03029 GRX_hybridPRX5 Glutare 99.8 1.4E-19 3.1E-24 120.4 9.0 70 83-157 2-71 (72)
19 TIGR02183 GRXA Glutaredoxin, G 99.8 4.8E-19 1E-23 122.2 9.4 73 84-160 2-81 (86)
20 PRK11200 grxA glutaredoxin 1; 99.8 6.9E-19 1.5E-23 120.8 9.6 74 82-159 1-81 (85)
21 KOG0911 Glutaredoxin-related p 99.8 7.5E-19 1.6E-23 138.9 10.6 95 71-169 128-227 (227)
22 PRK12759 bifunctional gluaredo 99.8 9.9E-19 2.1E-23 151.6 10.0 88 82-172 2-94 (410)
23 cd02066 GRX_family Glutaredoxi 99.8 7.5E-18 1.6E-22 109.9 9.6 71 83-157 1-71 (72)
24 cd03030 GRX_SH3BGR Glutaredoxi 99.7 5.3E-17 1.2E-21 113.5 9.8 80 84-167 2-91 (92)
25 PF00462 Glutaredoxin: Glutare 99.7 4.7E-17 1E-21 104.5 7.9 60 84-147 1-60 (60)
26 PRK10329 glutaredoxin-like pro 99.6 1.2E-15 2.6E-20 104.2 8.6 64 83-151 2-65 (81)
27 TIGR02194 GlrX_NrdH Glutaredox 99.6 1.7E-15 3.6E-20 100.8 7.5 64 84-152 1-65 (72)
28 TIGR02196 GlrX_YruB Glutaredox 99.5 1.7E-13 3.8E-18 89.6 8.1 66 83-152 1-66 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.4 1.4E-12 2.9E-17 85.2 8.8 66 83-152 1-66 (73)
30 TIGR02200 GlrX_actino Glutared 99.4 3.1E-12 6.8E-17 84.9 8.3 65 83-151 1-67 (77)
31 KOG2824 Glutaredoxin-related p 99.3 1.4E-12 3.1E-17 106.1 6.2 86 81-170 130-225 (281)
32 cd02973 TRX_GRX_like Thioredox 99.3 1.4E-11 3.1E-16 80.1 5.9 58 83-148 2-64 (67)
33 PF04908 SH3BGR: SH3-binding, 99.2 1E-10 2.2E-15 82.7 9.8 81 83-167 2-97 (99)
34 cd03041 GST_N_2GST_N GST_N fam 99.0 3.3E-09 7.2E-14 71.1 8.9 71 84-158 2-74 (77)
35 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 8.4E-10 1.8E-14 76.5 5.2 71 70-148 2-77 (89)
36 cd00570 GST_N_family Glutathio 99.0 7E-09 1.5E-13 66.1 8.6 69 84-156 1-69 (71)
37 cd03040 GST_N_mPGES2 GST_N fam 98.9 1.1E-08 2.4E-13 68.1 9.2 68 83-157 1-72 (77)
38 TIGR00411 redox_disulf_1 small 98.9 6.5E-09 1.4E-13 69.6 6.7 62 83-150 2-68 (82)
39 cd03037 GST_N_GRX2 GST_N famil 98.9 9.3E-09 2E-13 67.5 7.3 67 85-157 2-69 (71)
40 TIGR03140 AhpF alkyl hydropero 98.8 4E-09 8.6E-14 94.0 4.3 96 51-149 75-183 (515)
41 PRK15317 alkyl hydroperoxide r 98.8 4.6E-09 9.9E-14 93.6 4.4 95 51-148 74-181 (517)
42 cd03051 GST_N_GTT2_like GST_N 98.8 3.9E-08 8.5E-13 64.3 7.0 71 84-156 1-72 (74)
43 TIGR00412 redox_disulf_2 small 98.8 4.7E-08 1E-12 65.6 7.4 55 83-147 2-60 (76)
44 cd03060 GST_N_Omega_like GST_N 98.7 5.8E-08 1.2E-12 63.8 7.3 67 85-156 2-69 (71)
45 cd03045 GST_N_Delta_Epsilon GS 98.7 8.3E-08 1.8E-12 63.2 7.8 71 84-156 1-71 (74)
46 cd03036 ArsC_like Arsenate Red 98.7 9.9E-09 2.1E-13 73.9 3.4 47 84-130 1-47 (111)
47 cd03059 GST_N_SspA GST_N famil 98.7 7.9E-08 1.7E-12 63.0 7.2 69 84-157 1-69 (73)
48 cd02977 ArsC_family Arsenate R 98.7 1.3E-08 2.8E-13 72.3 3.4 48 84-131 1-48 (105)
49 cd03055 GST_N_Omega GST_N fami 98.7 1.1E-07 2.4E-12 65.5 7.8 71 81-156 16-87 (89)
50 PRK01655 spxA transcriptional 98.6 1.9E-07 4.2E-12 69.2 8.2 47 84-130 2-48 (131)
51 cd03056 GST_N_4 GST_N family, 98.6 2.7E-07 5.9E-12 60.3 8.0 71 84-156 1-71 (73)
52 PHA02125 thioredoxin-like prot 98.6 1.4E-07 3.1E-12 62.9 6.4 57 84-149 2-58 (75)
53 TIGR03143 AhpF_homolog putativ 98.6 5.8E-08 1.2E-12 87.4 5.4 89 50-146 433-539 (555)
54 PF13417 GST_N_3: Glutathione 98.6 3.8E-07 8.2E-12 60.7 7.8 68 86-158 1-68 (75)
55 cd02975 PfPDO_like_N Pyrococcu 98.6 1.5E-07 3.2E-12 67.8 6.0 59 76-142 17-81 (113)
56 cd03032 ArsC_Spx Arsenate Redu 98.5 5.3E-07 1.2E-11 65.2 8.2 48 84-131 2-49 (115)
57 TIGR02187 GlrX_arch Glutaredox 98.5 1.3E-07 2.8E-12 75.3 5.2 75 65-145 118-195 (215)
58 TIGR01617 arsC_related transcr 98.5 1.6E-07 3.5E-12 68.1 4.8 87 84-172 1-90 (117)
59 PF05768 DUF836: Glutaredoxin- 98.5 3.8E-07 8.3E-12 61.9 6.3 53 83-144 1-57 (81)
60 TIGR01295 PedC_BrcD bacterioci 98.5 1.3E-06 2.8E-11 63.9 9.3 78 73-150 14-106 (122)
61 PRK13344 spxA transcriptional 98.5 1.5E-07 3.3E-12 69.9 4.0 48 84-131 2-49 (132)
62 cd03035 ArsC_Yffb Arsenate Red 98.4 5.7E-07 1.2E-11 64.2 5.9 48 84-131 1-48 (105)
63 PRK12559 transcriptional regul 98.4 7.7E-07 1.7E-11 66.0 6.3 47 84-130 2-48 (131)
64 cd03052 GST_N_GDAP1 GST_N fami 98.4 1.8E-06 3.9E-11 57.3 7.5 71 84-156 1-71 (73)
65 cd03053 GST_N_Phi GST_N family 98.4 3.6E-06 7.7E-11 55.6 8.4 72 84-157 2-73 (76)
66 KOG3029 Glutathione S-transfer 98.3 4.4E-06 9.6E-11 68.9 9.1 78 83-167 90-173 (370)
67 cd02949 TRX_NTR TRX domain, no 98.3 2.5E-06 5.4E-11 59.3 6.5 61 84-150 17-83 (97)
68 cd03033 ArsC_15kD Arsenate Red 98.3 2.1E-06 4.6E-11 62.1 6.0 49 83-131 1-49 (113)
69 cd03054 GST_N_Metaxin GST_N fa 98.3 5.8E-06 1.3E-10 54.2 7.6 57 90-158 14-70 (72)
70 cd02953 DsbDgamma DsbD gamma f 98.3 5.6E-06 1.2E-10 58.0 7.7 67 74-142 3-78 (104)
71 cd02954 DIM1 Dim1 family; Dim1 98.2 1.9E-06 4.1E-11 62.5 5.1 59 84-148 18-82 (114)
72 PF13192 Thioredoxin_3: Thiore 98.2 3.9E-06 8.5E-11 56.1 6.2 54 83-146 2-59 (76)
73 cd03042 GST_N_Zeta GST_N famil 98.2 7.2E-06 1.6E-10 53.5 7.2 71 84-156 1-71 (73)
74 cd03058 GST_N_Tau GST_N family 98.2 9.7E-06 2.1E-10 53.4 7.8 69 84-157 1-70 (74)
75 cd03061 GST_N_CLIC GST_N famil 98.2 1.2E-05 2.6E-10 56.0 8.1 64 90-158 20-83 (91)
76 PHA02278 thioredoxin-like prot 98.2 1.7E-05 3.6E-10 56.4 8.3 70 75-148 7-86 (103)
77 cd02994 PDI_a_TMX PDIa family, 98.1 3.4E-06 7.4E-11 58.7 4.1 65 75-145 11-82 (101)
78 PF00085 Thioredoxin: Thioredo 98.1 3.7E-06 8.1E-11 57.9 4.1 76 84-168 21-102 (103)
79 PTZ00051 thioredoxin; Provisio 98.1 8.3E-06 1.8E-10 56.2 5.8 72 73-150 9-87 (98)
80 cd02985 TRX_CDSP32 TRX family, 98.1 1.2E-05 2.7E-10 56.6 6.5 63 84-149 19-86 (103)
81 cd02951 SoxW SoxW family; SoxW 98.1 1.5E-05 3.2E-10 57.8 6.8 68 73-142 4-90 (125)
82 PRK10026 arsenate reductase; P 98.1 3.1E-06 6.7E-11 63.5 3.2 50 82-131 2-51 (141)
83 cd02947 TRX_family TRX family; 98.1 2.8E-05 6.1E-10 51.6 7.6 58 84-149 14-78 (93)
84 COG4545 Glutaredoxin-related p 98.1 1.8E-05 3.8E-10 52.9 6.3 66 85-154 5-82 (85)
85 cd02989 Phd_like_TxnDC9 Phosdu 98.0 1.2E-05 2.5E-10 57.9 5.7 61 84-150 26-91 (113)
86 cd03049 GST_N_3 GST_N family, 98.0 1.9E-05 4.1E-10 51.8 6.4 68 84-156 1-71 (73)
87 cd03076 GST_N_Pi GST_N family, 98.0 5.8E-05 1.2E-09 49.8 8.6 70 83-157 1-70 (73)
88 cd03050 GST_N_Theta GST_N fami 98.0 4.4E-05 9.6E-10 50.4 8.0 72 84-157 1-72 (76)
89 cd03080 GST_N_Metaxin_like GST 98.0 3.4E-05 7.3E-10 51.1 7.3 63 84-158 2-71 (75)
90 cd02956 ybbN ybbN protein fami 98.0 1.2E-05 2.6E-10 55.3 5.2 59 84-148 16-80 (96)
91 cd03038 GST_N_etherase_LigE GS 98.0 2E-05 4.3E-10 53.3 6.2 66 90-158 14-80 (84)
92 cd02950 TxlA TRX-like protein 98.0 2.4E-05 5.2E-10 58.5 7.1 60 84-147 24-90 (142)
93 cd02957 Phd_like Phosducin (Ph 98.0 2.8E-05 6E-10 55.6 7.0 66 84-156 28-98 (113)
94 cd03048 GST_N_Ure2p_like GST_N 98.0 5.9E-05 1.3E-09 50.5 8.1 71 84-157 2-75 (81)
95 PF13409 GST_N_2: Glutathione 98.0 2.2E-05 4.7E-10 51.6 5.7 68 91-159 1-69 (70)
96 TIGR02187 GlrX_arch Glutaredox 98.0 1.2E-05 2.7E-10 63.9 5.1 72 70-147 4-90 (215)
97 KOG0910 Thioredoxin-like prote 97.9 2.2E-05 4.9E-10 59.2 5.9 58 84-147 65-128 (150)
98 cd02948 TRX_NDPK TRX domain, T 97.9 3.1E-05 6.7E-10 54.4 6.4 67 74-147 9-84 (102)
99 COG3118 Thioredoxin domain-con 97.9 1.3E-05 2.9E-10 66.6 4.8 75 70-152 32-115 (304)
100 cd03039 GST_N_Sigma_like GST_N 97.9 8E-05 1.7E-09 48.7 7.7 69 84-156 1-69 (72)
101 PRK10996 thioredoxin 2; Provis 97.9 5.6E-05 1.2E-09 56.2 7.6 86 74-168 44-137 (139)
102 COG1393 ArsC Arsenate reductas 97.9 3.6E-05 7.8E-10 56.0 6.3 49 83-131 2-50 (117)
103 cd02984 TRX_PICOT TRX domain, 97.9 3E-05 6.6E-10 53.2 5.7 58 84-147 18-81 (97)
104 cd03034 ArsC_ArsC Arsenate Red 97.9 6.7E-06 1.5E-10 59.2 2.4 48 84-131 1-48 (112)
105 TIGR01126 pdi_dom protein disu 97.9 2.5E-05 5.4E-10 53.7 5.0 53 84-142 17-75 (102)
106 PRK09381 trxA thioredoxin; Pro 97.9 3.6E-05 7.8E-10 54.2 5.8 77 83-168 24-106 (109)
107 cd02959 ERp19 Endoplasmic reti 97.9 4.6E-05 1E-09 55.2 6.4 72 70-148 7-91 (117)
108 cd02955 SSP411 TRX domain, SSP 97.9 0.00015 3.3E-09 53.2 9.1 76 73-150 6-97 (124)
109 PRK10853 putative reductase; P 97.9 3.8E-05 8.1E-10 56.0 5.7 48 84-131 2-49 (118)
110 TIGR01616 nitro_assoc nitrogen 97.9 5E-05 1.1E-09 56.0 6.3 48 83-130 2-49 (126)
111 TIGR00014 arsC arsenate reduct 97.9 4E-05 8.6E-10 55.4 5.7 48 84-131 1-48 (114)
112 cd02963 TRX_DnaJ TRX domain, D 97.9 1.2E-05 2.7E-10 57.3 3.0 59 84-148 28-93 (111)
113 cd02987 Phd_like_Phd Phosducin 97.8 4.8E-05 1E-09 59.0 6.3 80 84-170 87-175 (175)
114 KOG4023 Uncharacterized conser 97.8 2.9E-05 6.3E-10 54.4 4.5 86 82-167 2-97 (108)
115 PRK10387 glutaredoxin 2; Provi 97.8 0.0001 2.2E-09 57.6 7.6 70 84-159 1-71 (210)
116 cd01659 TRX_superfamily Thiore 97.8 6.5E-05 1.4E-09 45.5 5.2 56 84-144 1-61 (69)
117 cd02986 DLP Dim1 family, Dim1- 97.8 4.9E-05 1.1E-09 55.0 5.2 69 72-147 6-81 (114)
118 TIGR02182 GRXB Glutaredoxin, G 97.8 0.00011 2.4E-09 58.0 7.5 69 85-159 1-70 (209)
119 KOG0907 Thioredoxin [Posttrans 97.8 5.7E-05 1.2E-09 54.0 5.3 57 85-147 26-87 (106)
120 TIGR01068 thioredoxin thioredo 97.8 2.9E-05 6.4E-10 53.1 3.7 61 83-149 17-83 (101)
121 PF14595 Thioredoxin_9: Thiore 97.8 1.8E-05 3.8E-10 58.5 2.7 79 67-150 28-114 (129)
122 cd03047 GST_N_2 GST_N family, 97.8 0.00024 5.3E-09 46.5 7.8 70 85-156 2-71 (73)
123 cd02996 PDI_a_ERp44 PDIa famil 97.7 0.00014 3E-09 51.2 6.8 64 76-145 12-89 (108)
124 cd03044 GST_N_EF1Bgamma GST_N 97.7 0.00016 3.5E-09 47.8 6.6 69 85-156 2-71 (75)
125 cd03057 GST_N_Beta GST_N famil 97.7 0.00025 5.3E-09 46.9 7.4 70 85-157 2-72 (77)
126 PRK09481 sspA stringent starva 97.7 0.00018 4E-09 56.6 7.6 70 83-157 10-79 (211)
127 cd03000 PDI_a_TMX3 PDIa family 97.7 3.4E-05 7.5E-10 54.1 2.7 64 73-142 7-78 (104)
128 PF13098 Thioredoxin_2: Thiore 97.6 0.00022 4.8E-09 50.2 6.9 69 82-152 7-104 (112)
129 cd03003 PDI_a_ERdj5_N PDIa fam 97.6 0.00011 2.3E-09 51.1 5.0 58 84-147 22-85 (101)
130 cd02999 PDI_a_ERp44_like PDIa 97.6 6.6E-05 1.4E-09 52.7 3.8 54 84-142 22-78 (100)
131 PRK15113 glutathione S-transfe 97.6 0.0004 8.7E-09 54.8 8.5 74 82-157 4-79 (214)
132 cd02961 PDI_a_family Protein D 97.6 0.00014 3.1E-09 49.2 5.2 63 74-142 7-77 (101)
133 PRK10877 protein disulfide iso 97.6 0.00032 7E-09 56.7 7.7 23 83-105 110-132 (232)
134 cd02997 PDI_a_PDIR PDIa family 97.6 0.00018 4E-09 49.6 5.4 60 84-147 21-88 (104)
135 cd03046 GST_N_GTT1_like GST_N 97.5 0.00055 1.2E-08 44.8 7.2 71 85-158 2-72 (76)
136 cd02965 HyaE HyaE family; HyaE 97.5 0.00011 2.3E-09 53.1 3.9 64 81-150 28-99 (111)
137 cd03005 PDI_a_ERp46 PDIa famil 97.5 0.00015 3.3E-09 49.9 4.2 59 83-147 19-86 (102)
138 cd02962 TMX2 TMX2 family; comp 97.5 0.00022 4.7E-09 54.2 5.3 61 84-150 51-124 (152)
139 cd02988 Phd_like_VIAF Phosduci 97.5 0.00025 5.4E-09 55.8 5.6 78 84-170 106-192 (192)
140 cd03004 PDI_a_ERdj5_C PDIa fam 97.5 0.00084 1.8E-08 46.7 7.7 55 84-144 23-83 (104)
141 cd03065 PDI_b_Calsequestrin_N 97.5 0.00039 8.4E-09 50.8 6.0 82 74-167 18-116 (120)
142 cd03006 PDI_a_EFP1_N PDIa fami 97.4 0.00013 2.8E-09 52.6 3.2 62 79-145 26-95 (113)
143 cd03002 PDI_a_MPD1_like PDI fa 97.4 0.00063 1.4E-08 47.5 6.6 56 83-142 21-80 (109)
144 cd02952 TRP14_like Human TRX-r 97.4 0.0005 1.1E-08 50.2 6.0 66 84-150 25-106 (119)
145 cd03043 GST_N_1 GST_N family, 97.4 0.0013 2.8E-08 43.3 7.4 64 90-156 8-71 (73)
146 TIGR00862 O-ClC intracellular 97.4 0.001 2.2E-08 54.0 8.3 65 90-159 17-81 (236)
147 cd02993 PDI_a_APS_reductase PD 97.4 0.0011 2.4E-08 46.9 7.3 57 82-142 23-84 (109)
148 PF13899 Thioredoxin_7: Thiore 97.4 0.00075 1.6E-08 45.4 6.1 66 70-142 5-79 (82)
149 PLN02473 glutathione S-transfe 97.3 0.0012 2.7E-08 51.7 8.0 73 83-157 2-74 (214)
150 cd02992 PDI_a_QSOX PDIa family 97.3 0.00069 1.5E-08 48.6 5.3 56 83-142 22-84 (114)
151 cd03001 PDI_a_P5 PDIa family, 97.2 0.00053 1.1E-08 47.3 4.5 53 84-142 22-78 (103)
152 PF03960 ArsC: ArsC family; I 97.2 0.0006 1.3E-08 48.6 4.9 45 87-131 1-45 (110)
153 cd02998 PDI_a_ERp38 PDIa famil 97.2 0.00035 7.6E-09 48.1 3.2 55 83-142 21-81 (105)
154 PTZ00443 Thioredoxin domain-co 97.2 0.00083 1.8E-08 54.2 5.4 59 83-147 55-119 (224)
155 PTZ00062 glutaredoxin; Provisi 97.1 0.0011 2.4E-08 52.7 6.0 66 72-151 6-79 (204)
156 KOG0406 Glutathione S-transfer 97.1 0.0017 3.8E-08 52.4 7.1 72 82-158 8-80 (231)
157 PLN00410 U5 snRNP protein, DIM 97.1 0.00054 1.2E-08 51.5 3.4 54 84-145 27-89 (142)
158 TIGR02740 TraF-like TraF-like 97.0 0.0029 6.3E-08 52.3 7.3 69 73-142 159-235 (271)
159 COG3634 AhpF Alkyl hydroperoxi 97.0 0.0019 4.1E-08 55.5 6.2 78 66-149 102-182 (520)
160 cd03009 TryX_like_TryX_NRX Try 96.9 0.0044 9.5E-08 44.9 7.2 21 84-104 22-42 (131)
161 PLN02378 glutathione S-transfe 96.9 0.0034 7.4E-08 49.6 7.0 63 90-157 18-80 (213)
162 PRK13728 conjugal transfer pro 96.9 0.0026 5.7E-08 49.7 6.0 62 84-145 73-148 (181)
163 PF13728 TraF: F plasmid trans 96.9 0.0041 9E-08 49.7 7.3 72 70-142 110-189 (215)
164 cd03008 TryX_like_RdCVF Trypar 96.9 0.0099 2.1E-07 44.8 8.8 21 84-104 29-49 (146)
165 PLN02817 glutathione dehydroge 96.9 0.0037 8.1E-08 51.5 7.0 83 66-157 51-133 (265)
166 PRK00293 dipZ thiol:disulfide 96.9 0.0061 1.3E-07 55.4 9.0 75 69-146 461-547 (571)
167 TIGR01262 maiA maleylacetoacet 96.8 0.0033 7.1E-08 49.0 6.0 71 86-157 2-72 (210)
168 COG2999 GrxB Glutaredoxin 2 [P 96.8 0.0019 4.1E-08 50.2 4.4 67 85-157 2-69 (215)
169 cd03020 DsbA_DsbC_DsbG DsbA fa 96.8 0.0082 1.8E-07 46.9 7.9 23 82-104 79-101 (197)
170 cd02964 TryX_like_family Trypa 96.7 0.01 2.2E-07 43.2 7.4 21 84-104 21-41 (132)
171 PTZ00102 disulphide isomerase; 96.7 0.0039 8.5E-08 54.6 6.1 58 83-146 52-118 (477)
172 TIGR02738 TrbB type-F conjugat 96.6 0.0088 1.9E-07 45.4 6.9 37 80-116 50-90 (153)
173 TIGR01130 ER_PDI_fam protein d 96.6 0.0057 1.2E-07 53.0 6.6 67 74-146 10-87 (462)
174 cd02995 PDI_a_PDI_a'_C PDIa fa 96.6 0.0024 5.2E-08 43.9 3.2 53 83-142 21-79 (104)
175 PLN02395 glutathione S-transfe 96.5 0.015 3.2E-07 45.5 7.8 72 84-158 3-74 (215)
176 cd02958 UAS UAS family; UAS is 96.5 0.023 5E-07 40.3 7.9 75 69-147 4-91 (114)
177 COG0625 Gst Glutathione S-tran 96.4 0.011 2.4E-07 46.2 6.5 71 85-158 2-73 (211)
178 cd03077 GST_N_Alpha GST_N fami 96.4 0.057 1.2E-06 35.9 9.1 69 84-156 2-71 (79)
179 cd02967 mauD Methylamine utili 96.3 0.01 2.2E-07 41.6 5.4 56 83-141 24-83 (114)
180 PRK13972 GSH-dependent disulfi 96.3 0.024 5.3E-07 44.5 8.1 71 84-157 2-79 (215)
181 PLN02309 5'-adenylylsulfate re 96.3 0.0073 1.6E-07 53.5 5.4 55 84-142 369-428 (457)
182 cd03078 GST_N_Metaxin1_like GS 96.3 0.02 4.2E-07 37.9 6.1 57 90-158 14-70 (73)
183 KOG1422 Intracellular Cl- chan 96.2 0.014 3E-07 46.5 6.0 62 91-157 20-81 (221)
184 TIGR02739 TraF type-F conjugat 96.2 0.021 4.5E-07 47.0 7.0 72 70-142 140-219 (256)
185 PRK13703 conjugal pilus assemb 96.1 0.023 4.9E-07 46.5 7.1 69 71-142 134-212 (248)
186 PRK03147 thiol-disulfide oxido 96.1 0.025 5.4E-07 42.6 7.0 23 82-104 63-85 (173)
187 PRK11752 putative S-transferas 96.1 0.032 7E-07 45.7 8.0 77 78-157 39-125 (264)
188 cd02982 PDI_b'_family Protein 96.1 0.012 2.7E-07 40.4 4.7 55 82-142 14-74 (103)
189 KOG2501 Thioredoxin, nucleored 96.1 0.083 1.8E-06 40.3 9.3 93 79-173 31-156 (157)
190 KOG0190 Protein disulfide isom 96.1 0.019 4.1E-07 51.2 6.7 68 73-146 33-111 (493)
191 PRK10357 putative glutathione 96.0 0.021 4.5E-07 44.3 6.2 68 84-156 1-69 (202)
192 KOG0908 Thioredoxin-like prote 96.0 0.021 4.6E-07 46.8 6.1 60 83-148 24-88 (288)
193 cd02972 DsbA_family DsbA famil 96.0 0.022 4.7E-07 37.9 5.4 22 84-105 1-22 (98)
194 cd03011 TlpA_like_ScsD_MtbDsbE 96.0 0.029 6.4E-07 39.8 6.3 33 82-114 22-54 (123)
195 PF02798 GST_N: Glutathione S- 96.0 0.053 1.2E-06 35.8 7.1 69 84-156 3-73 (76)
196 PRK15412 thiol:disulfide inter 95.9 0.033 7.2E-07 43.1 6.8 32 84-115 72-104 (185)
197 smart00594 UAS UAS domain. 95.9 0.068 1.5E-06 38.6 8.0 72 67-142 12-92 (122)
198 PF03190 Thioredox_DsbH: Prote 95.8 0.048 1E-06 41.9 7.0 75 72-148 27-117 (163)
199 TIGR00424 APS_reduc 5'-adenyly 95.7 0.015 3.2E-07 51.7 4.5 56 84-145 375-439 (463)
200 TIGR02661 MauD methylamine deh 95.7 0.064 1.4E-06 41.7 7.7 21 84-104 78-98 (189)
201 PF07315 DUF1462: Protein of u 95.7 0.043 9.2E-07 37.9 5.7 69 85-154 1-86 (93)
202 cd02960 AGR Anterior Gradient 95.7 0.02 4.3E-07 42.4 4.4 36 67-102 8-45 (130)
203 cd02966 TlpA_like_family TlpA- 95.5 0.029 6.2E-07 38.2 4.6 25 81-105 20-44 (116)
204 cd03010 TlpA_like_DsbE TlpA-li 95.5 0.062 1.3E-06 38.5 6.5 23 83-105 28-50 (127)
205 COG3019 Predicted metal-bindin 95.5 0.065 1.4E-06 40.1 6.5 72 81-160 25-103 (149)
206 PF06764 DUF1223: Protein of u 95.4 0.026 5.7E-07 44.8 4.7 68 84-151 2-86 (202)
207 KOG0867 Glutathione S-transfer 95.3 0.076 1.6E-06 42.6 7.2 73 83-157 2-74 (226)
208 cd03079 GST_N_Metaxin2 GST_N f 95.3 0.11 2.4E-06 34.6 6.7 57 90-157 15-71 (74)
209 TIGR00385 dsbE periplasmic pro 95.3 0.079 1.7E-06 40.5 6.8 22 84-105 67-88 (173)
210 cd03007 PDI_a_ERp29_N PDIa fam 95.3 0.19 4.2E-06 36.4 8.4 68 75-145 11-91 (116)
211 KOG4244 Failed axon connection 95.2 0.091 2E-06 43.3 7.2 69 75-155 37-112 (281)
212 KOG3425 Uncharacterized conser 95.0 0.047 1E-06 39.8 4.5 38 67-104 11-57 (128)
213 cd03012 TlpA_like_DipZ_like Tl 95.0 0.049 1.1E-06 39.2 4.7 23 83-105 26-48 (126)
214 PF13905 Thioredoxin_8: Thiore 95.0 0.06 1.3E-06 36.4 4.9 46 84-130 5-56 (95)
215 cd03075 GST_N_Mu GST_N family, 95.0 0.31 6.6E-06 32.6 8.2 70 86-157 3-78 (82)
216 PRK14018 trifunctional thiored 94.8 0.037 8E-07 49.9 4.4 22 84-105 60-81 (521)
217 PTZ00102 disulphide isomerase; 94.8 0.016 3.5E-07 50.8 1.9 53 84-142 379-437 (477)
218 COG2143 Thioredoxin-related pr 94.6 0.18 4E-06 38.6 7.0 33 71-103 31-65 (182)
219 KOG4277 Uncharacterized conser 94.4 0.064 1.4E-06 45.3 4.5 61 84-147 47-112 (468)
220 PHA03075 glutaredoxin-like pro 94.2 0.071 1.5E-06 38.6 3.8 33 82-114 3-35 (123)
221 COG5494 Predicted thioredoxin/ 94.2 0.12 2.5E-06 41.5 5.3 68 82-157 11-84 (265)
222 PRK10542 glutathionine S-trans 94.1 0.2 4.4E-06 38.5 6.6 70 85-157 2-73 (201)
223 PRK11657 dsbG disulfide isomer 93.9 0.1 2.2E-06 42.6 4.7 22 83-104 120-141 (251)
224 KOG0868 Glutathione S-transfer 93.8 0.13 2.8E-06 40.3 4.8 73 83-158 5-79 (217)
225 PF06110 DUF953: Eukaryotic pr 93.6 0.14 3.1E-06 37.3 4.6 35 70-104 7-50 (119)
226 PF08534 Redoxin: Redoxin; In 93.6 0.34 7.5E-06 35.3 6.7 43 84-130 32-82 (146)
227 COG4232 Thiol:disulfide interc 93.4 0.16 3.6E-06 46.0 5.5 89 74-169 464-567 (569)
228 PLN02919 haloacid dehalogenase 93.3 0.18 3.8E-06 49.3 5.8 22 84-105 424-445 (1057)
229 PTZ00057 glutathione s-transfe 93.1 0.69 1.5E-05 36.0 8.0 71 83-156 4-78 (205)
230 PF06953 ArsD: Arsenical resis 92.9 0.39 8.5E-06 35.2 6.0 56 97-153 31-91 (123)
231 COG0526 TrxA Thiol-disulfide i 92.8 0.56 1.2E-05 31.1 6.3 20 87-106 39-58 (127)
232 PF10568 Tom37: Outer mitochon 92.6 0.47 1E-05 31.3 5.5 54 92-157 14-71 (72)
233 KOG0191 Thioredoxin/protein di 92.4 0.18 4E-06 43.4 4.3 60 80-142 47-107 (383)
234 COG4837 Uncharacterized protei 92.4 0.27 5.9E-06 34.3 4.2 69 80-149 3-87 (106)
235 cd03023 DsbA_Com1_like DsbA fa 91.9 0.11 2.3E-06 37.8 1.9 23 82-104 7-29 (154)
236 KOG0912 Thiol-disulfide isomer 91.6 0.38 8.2E-06 40.7 5.0 70 75-147 6-85 (375)
237 cd02969 PRX_like1 Peroxiredoxi 91.5 1 2.2E-05 34.0 7.0 22 83-104 28-49 (171)
238 TIGR01130 ER_PDI_fam protein d 91.4 0.13 2.8E-06 44.5 2.2 51 84-142 368-425 (462)
239 PF02114 Phosducin: Phosducin; 90.9 0.032 6.9E-07 46.1 -2.0 83 84-173 150-241 (265)
240 PF11009 DUF2847: Protein of u 90.7 4.5 9.7E-05 28.8 9.2 65 80-148 18-92 (105)
241 PTZ00056 glutathione peroxidas 90.7 0.86 1.9E-05 35.8 6.1 21 84-104 43-63 (199)
242 TIGR01626 ytfJ_HI0045 conserve 90.6 0.96 2.1E-05 35.4 6.2 37 80-116 59-104 (184)
243 cd02968 SCO SCO (an acronym fo 90.5 1.1 2.4E-05 32.3 6.2 22 83-104 25-47 (142)
244 PF00578 AhpC-TSA: AhpC/TSA fa 90.2 1.7 3.7E-05 30.4 6.8 55 84-142 29-89 (124)
245 cd05295 MDH_like Malate dehydr 89.7 0.73 1.6E-05 41.0 5.4 69 90-158 2-82 (452)
246 cd03014 PRX_Atyp2cys Peroxired 89.3 0.63 1.4E-05 33.8 4.1 24 81-104 26-51 (143)
247 PLN02399 phospholipid hydroper 89.2 1.5 3.2E-05 35.7 6.4 23 82-104 101-123 (236)
248 cd00340 GSH_Peroxidase Glutath 89.2 0.92 2E-05 33.7 5.0 20 84-104 26-45 (152)
249 KOG4420 Uncharacterized conser 89.1 0.26 5.5E-06 40.8 2.0 74 84-159 27-100 (325)
250 PLN02412 probable glutathione 89.0 2 4.4E-05 32.6 6.8 20 84-103 33-52 (167)
251 TIGR03143 AhpF_homolog putativ 89.0 0.96 2.1E-05 41.0 5.8 67 68-142 350-425 (555)
252 PTZ00256 glutathione peroxidas 88.6 1.5 3.2E-05 33.8 5.9 19 85-103 46-64 (183)
253 cd03023 DsbA_Com1_like DsbA fa 88.5 0.64 1.4E-05 33.7 3.6 25 132-156 125-149 (154)
254 cd03017 PRX_BCP Peroxiredoxin 88.4 2.4 5.1E-05 30.4 6.6 46 84-131 27-78 (140)
255 cd02970 PRX_like2 Peroxiredoxi 88.0 1.2 2.6E-05 32.2 4.8 23 83-105 26-49 (149)
256 cd02971 PRX_family Peroxiredox 87.9 1.7 3.7E-05 31.1 5.6 54 84-140 26-85 (140)
257 cd03018 PRX_AhpE_like Peroxire 87.8 3 6.5E-05 30.3 6.9 21 84-104 32-53 (149)
258 cd03022 DsbA_HCCA_Iso DsbA fam 87.3 1.1 2.3E-05 34.1 4.3 57 97-156 125-187 (192)
259 PF13462 Thioredoxin_4: Thiore 87.1 1.3 2.8E-05 32.5 4.6 22 132-153 132-153 (162)
260 COG1331 Highly conserved prote 87.1 3.9 8.5E-05 38.0 8.4 76 72-147 33-122 (667)
261 KOG0190 Protein disulfide isom 87.1 0.29 6.2E-06 43.9 1.2 26 84-109 388-413 (493)
262 cd03019 DsbA_DsbA DsbA family, 86.9 0.62 1.3E-05 34.9 2.8 24 81-104 16-39 (178)
263 KOG3171 Conserved phosducin-li 86.6 2 4.4E-05 34.6 5.6 81 88-172 167-253 (273)
264 KOG1695 Glutathione S-transfer 86.5 4.2 9.1E-05 32.4 7.4 70 83-157 3-72 (206)
265 COG5429 Uncharacterized secret 86.1 1.2 2.7E-05 36.2 4.2 62 84-145 45-122 (261)
266 PF13462 Thioredoxin_4: Thiore 85.5 0.94 2E-05 33.3 3.1 22 82-103 14-35 (162)
267 TIGR02540 gpx7 putative glutat 85.1 0.94 2E-05 33.6 2.9 20 84-103 26-45 (153)
268 PRK09437 bcp thioredoxin-depen 83.2 5.6 0.00012 29.2 6.5 20 80-99 29-50 (154)
269 cd03015 PRX_Typ2cys Peroxiredo 83.2 4.3 9.4E-05 30.7 6.0 23 82-104 30-54 (173)
270 KOG1672 ATP binding protein [P 83.1 2.3 5E-05 33.7 4.4 95 72-172 75-180 (211)
271 PF04134 DUF393: Protein of un 83.1 2.8 6E-05 29.4 4.6 69 86-159 1-76 (114)
272 PRK00522 tpx lipid hydroperoxi 82.8 2.2 4.8E-05 32.3 4.2 21 84-104 48-69 (167)
273 PRK11509 hydrogenase-1 operon 81.8 2.2 4.8E-05 31.6 3.7 54 91-150 47-107 (132)
274 cd03010 TlpA_like_DsbE TlpA-li 81.0 12 0.00026 26.3 7.4 67 73-147 45-114 (127)
275 TIGR03759 conj_TIGR03759 integ 80.9 4.2 9.2E-05 32.2 5.2 50 80-130 108-157 (200)
276 COG3011 Predicted thiol-disulf 79.5 18 0.00039 27.0 7.9 71 80-156 6-82 (137)
277 KOG0191 Thioredoxin/protein di 79.4 2.4 5.3E-05 36.5 3.8 57 80-142 162-224 (383)
278 cd02991 UAS_ETEA UAS family, E 78.5 22 0.00047 25.4 8.3 67 69-142 4-82 (116)
279 PF01323 DSBA: DSBA-like thior 78.5 1.8 4E-05 32.7 2.5 57 97-156 125-188 (193)
280 PF01323 DSBA: DSBA-like thior 78.2 3 6.6E-05 31.5 3.6 33 83-115 1-38 (193)
281 TIGR00385 dsbE periplasmic pro 76.7 10 0.00023 28.6 6.2 66 73-147 83-151 (173)
282 TIGR03137 AhpC peroxiredoxin. 75.9 12 0.00025 28.9 6.4 23 80-102 30-54 (187)
283 PRK10954 periplasmic protein d 75.8 3.8 8.3E-05 32.1 3.7 21 132-152 163-183 (207)
284 cd03019 DsbA_DsbA DsbA family, 75.6 3.4 7.3E-05 30.8 3.2 53 96-151 100-158 (178)
285 COG2761 FrnE Predicted dithiol 74.5 6 0.00013 32.0 4.5 23 82-104 6-28 (225)
286 cd03016 PRX_1cys Peroxiredoxin 74.2 6.8 0.00015 30.6 4.7 21 82-102 26-48 (203)
287 PF09822 ABC_transp_aux: ABC-t 71.3 14 0.0003 30.1 6.1 68 66-137 11-89 (271)
288 PF11287 DUF3088: Protein of u 71.0 8.1 0.00018 27.8 4.0 49 91-144 23-76 (112)
289 PF15643 Tox-PL-2: Papain fold 69.3 31 0.00067 24.3 6.5 53 91-148 20-73 (100)
290 cd02974 AhpF_NTD_N Alkyl hydro 69.2 8.6 0.00019 26.6 3.8 37 69-106 4-44 (94)
291 PF10865 DUF2703: Domain of un 68.5 15 0.00033 26.8 5.1 48 91-147 14-72 (120)
292 KOG1731 FAD-dependent sulfhydr 68.3 2.4 5.2E-05 38.7 1.0 67 83-150 60-139 (606)
293 KOG2244 Highly conserved prote 67.7 7.8 0.00017 35.5 4.0 70 67-138 97-179 (786)
294 PRK13190 putative peroxiredoxi 67.5 7.2 0.00016 30.6 3.5 22 82-103 28-51 (202)
295 TIGR01689 EcbF-BcbF capsule bi 66.4 23 0.00051 25.8 5.8 50 67-116 25-87 (126)
296 TIGR03439 methyl_EasF probable 65.5 36 0.00078 28.9 7.5 63 89-156 82-147 (319)
297 PF13344 Hydrolase_6: Haloacid 64.0 43 0.00093 23.1 6.6 60 69-131 17-77 (101)
298 COG3340 PepE Peptidase E [Amin 63.5 34 0.00073 27.7 6.5 83 70-163 19-109 (224)
299 cd06387 PBP1_iGluR_AMPA_GluR3 63.0 24 0.00052 30.4 6.2 86 70-156 51-146 (372)
300 PRK13599 putative peroxiredoxi 62.9 12 0.00026 29.7 4.0 22 81-102 28-51 (215)
301 PRK10954 periplasmic protein d 62.8 4.8 0.0001 31.5 1.7 19 83-101 40-58 (207)
302 cd03022 DsbA_HCCA_Iso DsbA fam 62.5 12 0.00026 28.2 3.8 28 84-111 1-32 (192)
303 PRK15000 peroxidase; Provision 61.4 22 0.00048 27.8 5.2 24 80-103 33-58 (200)
304 cd03021 DsbA_GSTK DsbA family, 61.0 16 0.00035 28.5 4.4 33 83-115 2-40 (209)
305 PF13905 Thioredoxin_8: Thiore 61.0 44 0.00096 21.9 8.8 56 81-142 33-88 (95)
306 PF03575 Peptidase_S51: Peptid 60.7 25 0.00054 26.1 5.2 64 94-168 1-64 (154)
307 cd03024 DsbA_FrnE DsbA family, 60.3 7.7 0.00017 29.6 2.4 56 97-153 133-193 (201)
308 COG1651 DsbG Protein-disulfide 59.9 40 0.00087 26.7 6.6 24 81-104 85-108 (244)
309 cd06388 PBP1_iGluR_AMPA_GluR4 58.5 47 0.001 28.4 7.2 87 70-157 51-147 (371)
310 TIGR01162 purE phosphoribosyla 56.6 42 0.00091 25.6 5.8 72 86-158 5-100 (156)
311 PRK10382 alkyl hydroperoxide r 56.2 46 0.001 25.8 6.2 22 82-103 32-55 (187)
312 PRK10606 btuE putative glutath 56.0 11 0.00025 29.2 2.7 17 81-97 26-42 (183)
313 PF05673 DUF815: Protein of un 56.0 68 0.0015 26.4 7.3 66 80-147 51-117 (249)
314 cd03013 PRX5_like Peroxiredoxi 53.2 73 0.0016 23.6 6.7 23 76-98 24-48 (155)
315 PF00282 Pyridoxal_deC: Pyrido 52.8 36 0.00078 29.3 5.5 74 81-156 139-216 (373)
316 PRK13189 peroxiredoxin; Provis 52.7 17 0.00038 28.9 3.4 19 81-99 35-55 (222)
317 PF12689 Acid_PPase: Acid Phos 52.4 1E+02 0.0022 23.6 7.4 78 66-146 45-134 (169)
318 PRK15348 type III secretion sy 52.1 22 0.00047 29.2 3.8 88 79-169 16-119 (249)
319 PRK15317 alkyl hydroperoxide r 50.8 19 0.00041 32.2 3.6 38 68-106 3-44 (517)
320 cd06389 PBP1_iGluR_AMPA_GluR2 49.8 55 0.0012 27.8 6.2 86 70-156 45-140 (370)
321 PRK13191 putative peroxiredoxi 49.8 27 0.00059 27.7 4.0 25 80-104 32-58 (215)
322 PTZ00137 2-Cys peroxiredoxin; 49.8 40 0.00087 27.8 5.1 25 76-100 93-119 (261)
323 PF04566 RNA_pol_Rpb2_4: RNA p 49.3 17 0.00037 23.3 2.3 15 140-154 1-15 (63)
324 PRK15412 thiol:disulfide inter 48.2 1.2E+02 0.0026 23.0 7.5 53 83-143 97-150 (185)
325 COG1651 DsbG Protein-disulfide 48.1 31 0.00067 27.3 4.2 24 131-154 210-233 (244)
326 cd06390 PBP1_iGluR_AMPA_GluR1 48.0 88 0.0019 26.7 7.2 86 70-156 44-139 (364)
327 PF08599 Nbs1_C: DNA damage re 46.8 16 0.00034 23.6 1.8 32 132-169 13-45 (65)
328 KOG2454 Betaine aldehyde dehyd 46.0 37 0.00081 30.0 4.5 65 52-116 183-256 (583)
329 COG0041 PurE Phosphoribosylcar 45.9 86 0.0019 24.0 5.9 72 84-156 7-102 (162)
330 PTZ00253 tryparedoxin peroxida 45.3 62 0.0014 25.0 5.4 34 82-115 37-79 (199)
331 cd03025 DsbA_FrnE_like DsbA fa 44.7 15 0.00033 27.7 1.8 21 83-103 2-22 (193)
332 TIGR03140 AhpF alkyl hydropero 44.4 28 0.0006 31.2 3.6 38 68-106 3-44 (515)
333 PF03227 GILT: Gamma interfero 43.3 22 0.00048 25.0 2.3 16 83-98 2-17 (108)
334 KOG0913 Thiol-disulfide isomer 42.1 6.4 0.00014 32.1 -0.7 44 73-116 32-82 (248)
335 PRK08118 topology modulation p 41.4 1.2E+02 0.0026 22.8 6.3 66 82-150 2-72 (167)
336 PF00731 AIRC: AIR carboxylase 41.4 60 0.0013 24.5 4.5 47 84-131 3-51 (150)
337 PTZ00494 tuzin-like protein; P 41.1 98 0.0021 28.3 6.4 66 73-145 385-452 (664)
338 COG1999 Uncharacterized protei 41.1 91 0.002 24.6 5.8 52 80-133 66-127 (207)
339 KOG3414 Component of the U4/U6 41.0 81 0.0018 23.4 5.0 67 73-147 12-90 (142)
340 cd08183 Fe-ADH2 Iron-containin 40.5 1.6E+02 0.0036 25.1 7.7 49 82-131 23-71 (374)
341 KOG3027 Mitochondrial outer me 40.3 64 0.0014 26.1 4.7 69 90-169 32-102 (257)
342 PLN02790 transketolase 40.2 66 0.0014 30.0 5.5 89 82-170 541-640 (654)
343 cd00886 MogA_MoaB MogA_MoaB fa 40.1 1E+02 0.0022 22.8 5.6 61 95-158 22-84 (152)
344 TIGR03865 PQQ_CXXCW PQQ-depend 39.3 61 0.0013 24.4 4.4 29 80-108 115-143 (162)
345 KOG3170 Conserved phosducin-li 37.9 76 0.0017 25.5 4.7 81 87-173 118-204 (240)
346 PLN02590 probable tyrosine dec 37.4 1.6E+02 0.0036 26.8 7.5 73 82-156 228-309 (539)
347 cd03024 DsbA_FrnE DsbA family, 37.4 27 0.00058 26.5 2.2 20 84-103 1-20 (201)
348 PF10087 DUF2325: Uncharacteri 37.3 1.3E+02 0.0028 20.3 6.9 58 69-130 36-95 (97)
349 PRK11892 pyruvate dehydrogenas 37.3 1.5E+02 0.0032 26.6 7.1 68 81-152 340-409 (464)
350 PRK09590 celB cellobiose phosp 36.8 78 0.0017 22.2 4.3 27 122-148 61-87 (104)
351 TIGR03521 GldG gliding-associa 36.5 1.2E+02 0.0025 27.7 6.4 51 66-116 34-94 (552)
352 TIGR01616 nitro_assoc nitrogen 36.3 57 0.0012 23.7 3.6 54 99-152 53-106 (126)
353 PRK09212 pyruvate dehydrogenas 36.1 1.3E+02 0.0028 25.5 6.2 66 82-152 202-270 (327)
354 COG0602 NrdG Organic radical a 35.8 17 0.00038 28.8 0.9 68 84-159 23-97 (212)
355 PF14437 MafB19-deam: MafB19-l 35.3 1.2E+02 0.0027 22.8 5.3 29 81-109 99-129 (146)
356 TIGR00014 arsC arsenate reduct 35.1 69 0.0015 22.6 3.9 53 100-152 55-107 (114)
357 cd03034 ArsC_ArsC Arsenate Red 34.9 73 0.0016 22.4 3.9 53 99-151 53-105 (112)
358 smart00852 MoCF_biosynth Proba 34.8 1.1E+02 0.0024 21.9 5.0 59 96-157 21-79 (135)
359 PLN02683 pyruvate dehydrogenas 34.6 1.4E+02 0.0031 25.6 6.4 69 81-153 228-298 (356)
360 PRK04195 replication factor C 34.6 3.3E+02 0.0072 24.2 8.9 34 81-114 39-72 (482)
361 TIGR00853 pts-lac PTS system, 34.2 1.1E+02 0.0024 20.9 4.7 31 121-151 60-90 (95)
362 cd00758 MoCF_BD MoCF_BD: molyb 34.2 1.2E+02 0.0025 21.9 5.0 59 96-157 22-80 (133)
363 cd01444 GlpE_ST GlpE sulfurtra 34.1 1.2E+02 0.0026 19.8 4.8 38 70-108 45-82 (96)
364 cd08193 HVD 5-hydroxyvalerate 34.0 2.2E+02 0.0048 24.3 7.5 62 82-144 27-92 (376)
365 cd04911 ACT_AKiii-YclM-BS_1 AC 33.8 44 0.00095 22.3 2.5 22 91-112 14-35 (76)
366 PF05988 DUF899: Bacterial pro 33.7 65 0.0014 25.8 3.8 93 46-144 31-138 (211)
367 TIGR00177 molyb_syn molybdenum 32.7 1.4E+02 0.0031 21.8 5.4 58 97-157 31-88 (144)
368 COG3526 Uncharacterized protei 32.5 1.7E+02 0.0036 20.1 5.8 59 82-156 6-74 (99)
369 PF00004 AAA: ATPase family as 32.2 65 0.0014 22.1 3.4 61 84-144 1-66 (132)
370 cd03035 ArsC_Yffb Arsenate Red 32.1 44 0.00095 23.4 2.4 54 99-152 51-105 (105)
371 cd08170 GlyDH Glycerol dehydro 32.0 2.3E+02 0.005 23.8 7.2 49 82-131 23-73 (351)
372 cd05565 PTS_IIB_lactose PTS_II 31.6 69 0.0015 22.3 3.3 29 120-148 56-84 (99)
373 PF00532 Peripla_BP_1: Peripla 31.3 2.8E+02 0.0061 22.4 7.6 74 65-145 13-88 (279)
374 KOG0914 Thioredoxin-like prote 31.1 39 0.00084 27.6 2.1 62 84-147 148-218 (265)
375 cd06381 PBP1_iGluR_delta_like 30.8 3E+02 0.0066 23.3 7.8 86 69-156 49-160 (363)
376 PLN02234 1-deoxy-D-xylulose-5- 30.8 1.6E+02 0.0035 27.6 6.4 68 81-152 544-612 (641)
377 PLN02958 diacylglycerol kinase 30.7 3.9E+02 0.0084 24.0 8.7 59 57-115 83-152 (481)
378 PRK05899 transketolase; Review 30.5 1.1E+02 0.0024 28.2 5.3 87 82-171 511-611 (624)
379 PRK05282 (alpha)-aspartyl dipe 30.1 3E+02 0.0064 22.2 8.3 48 66-113 15-68 (233)
380 COG2607 Predicted ATPase (AAA+ 29.4 2.8E+02 0.0061 23.2 6.8 65 79-145 83-148 (287)
381 PF09413 DUF2007: Domain of un 29.4 55 0.0012 20.4 2.3 52 84-144 1-52 (67)
382 PF02724 CDC45: CDC45-like pro 29.1 2.5E+02 0.0055 26.1 7.4 67 83-157 1-70 (622)
383 cd03036 ArsC_like Arsenate Red 29.1 78 0.0017 22.1 3.3 31 122-152 78-108 (111)
384 cd05564 PTS_IIB_chitobiose_lic 29.0 1.5E+02 0.0032 20.2 4.6 30 122-151 57-86 (96)
385 cd06392 PBP1_iGluR_delta_1 N-t 29.0 2.6E+02 0.0056 24.4 7.1 85 71-156 51-160 (400)
386 CHL00144 odpB pyruvate dehydro 29.0 2.1E+02 0.0046 24.2 6.4 68 82-153 202-271 (327)
387 PRK12559 transcriptional regul 28.6 66 0.0014 23.5 2.9 54 99-152 54-107 (131)
388 TIGR00734 hisAF_rel hisA/hisF 28.6 1.5E+02 0.0032 23.6 5.1 64 94-160 142-206 (221)
389 PF07449 HyaE: Hydrogenase-1 e 28.5 1.3E+02 0.0028 21.4 4.3 70 81-153 26-101 (107)
390 COG5309 Exo-beta-1,3-glucanase 28.3 3.6E+02 0.0079 22.7 7.6 81 68-150 62-147 (305)
391 cd08192 Fe-ADH7 Iron-containin 28.0 3.3E+02 0.0071 23.2 7.5 61 82-144 25-90 (370)
392 PF02662 FlpD: Methyl-viologen 27.8 2.2E+02 0.0047 20.5 5.5 82 83-171 1-91 (124)
393 TIGR02263 benz_CoA_red_C benzo 27.7 1.5E+02 0.0033 25.5 5.5 44 73-116 311-361 (380)
394 TIGR00635 ruvB Holliday juncti 27.3 2.5E+02 0.0054 22.8 6.5 59 83-145 32-90 (305)
395 cd08185 Fe-ADH1 Iron-containin 27.3 3.3E+02 0.0073 23.2 7.5 49 82-131 26-79 (380)
396 KOG3028 Translocase of outer m 27.2 2.4E+02 0.0051 24.1 6.2 65 83-159 3-73 (313)
397 cd03146 GAT1_Peptidase_E Type 27.2 3E+02 0.0066 21.4 8.3 90 67-169 16-110 (212)
398 PF05678 VQ: VQ motif; InterP 26.9 1.2E+02 0.0026 16.6 3.6 26 108-138 4-29 (31)
399 PF07511 DUF1525: Protein of u 26.7 84 0.0018 22.7 3.1 25 132-156 79-104 (114)
400 TIGR03190 benz_CoA_bzdN benzoy 26.7 2.2E+02 0.0049 24.4 6.3 12 136-147 343-354 (377)
401 PTZ00182 3-methyl-2-oxobutanat 26.3 2E+02 0.0043 24.7 5.9 68 81-153 233-303 (355)
402 PF13353 Fer4_12: 4Fe-4S singl 26.3 68 0.0015 22.7 2.6 14 83-96 7-23 (139)
403 TIGR01306 GMP_reduct_2 guanosi 26.2 4.1E+02 0.0089 22.6 9.4 86 70-160 70-158 (321)
404 KOG2863 RNA lariat debranching 25.7 59 0.0013 28.5 2.4 22 125-146 62-85 (456)
405 PRK05788 cobalamin biosynthesi 25.4 2.1E+02 0.0045 24.2 5.7 48 68-116 38-86 (315)
406 PRK05458 guanosine 5'-monophos 25.2 4.3E+02 0.0094 22.5 8.6 78 77-159 79-160 (326)
407 PF00994 MoCF_biosynth: Probab 24.7 1.2E+02 0.0027 21.9 3.8 62 93-157 17-78 (144)
408 PRK10558 alpha-dehydro-beta-de 24.4 3.7E+02 0.0079 21.9 6.9 52 94-145 28-79 (256)
409 cd08186 Fe-ADH8 Iron-containin 24.2 4E+02 0.0086 22.8 7.4 49 82-131 27-80 (383)
410 PF00072 Response_reg: Respons 24.0 2.2E+02 0.0047 18.6 7.0 72 69-145 8-80 (112)
411 PF01522 Polysacc_deac_1: Poly 23.8 58 0.0013 22.3 1.8 34 75-109 89-122 (123)
412 PLN02880 tyrosine decarboxylas 23.7 2.3E+02 0.005 25.4 6.0 73 82-156 180-261 (490)
413 PF02780 Transketolase_C: Tran 23.6 1.2E+02 0.0026 21.3 3.5 68 81-152 9-78 (124)
414 PF06053 DUF929: Domain of unk 23.6 44 0.00096 27.4 1.3 23 84-106 62-88 (249)
415 PLN02645 phosphoglycolate phos 23.6 4.3E+02 0.0092 21.9 7.7 60 69-131 47-107 (311)
416 PRK00748 1-(5-phosphoribosyl)- 23.2 2.1E+02 0.0045 22.4 5.1 62 97-160 34-96 (233)
417 COG2204 AtoC Response regulato 22.7 4.9E+02 0.011 23.4 7.7 88 68-162 13-100 (464)
418 cd08188 Fe-ADH4 Iron-containin 22.6 4.3E+02 0.0094 22.6 7.3 49 82-131 29-81 (377)
419 TIGR03757 conj_TIGR03757 integ 22.6 1E+02 0.0022 22.2 2.8 25 132-156 80-105 (113)
420 cd08194 Fe-ADH6 Iron-containin 22.5 4.5E+02 0.0098 22.4 7.4 49 82-131 24-76 (375)
421 COG1832 Predicted CoA-binding 22.1 3E+02 0.0064 20.7 5.3 43 72-116 6-51 (140)
422 cd01520 RHOD_YbbB Member of th 22.0 2.6E+02 0.0057 19.6 5.1 36 78-115 83-118 (128)
423 PF13364 BetaGal_dom4_5: Beta- 21.8 75 0.0016 22.3 2.1 19 133-151 60-78 (111)
424 KOG1734 Predicted RING-contain 21.7 51 0.0011 27.6 1.3 18 85-102 266-283 (328)
425 PRK15454 ethanol dehydrogenase 21.7 4.5E+02 0.0099 22.7 7.3 63 67-130 32-101 (395)
426 cd08182 HEPD Hydroxyethylphosp 21.7 5E+02 0.011 22.0 7.5 48 82-130 24-72 (367)
427 PLN00020 ribulose bisphosphate 21.6 2.4E+02 0.0052 25.0 5.4 61 84-144 151-220 (413)
428 COG2179 Predicted hydrolase of 21.4 4E+02 0.0086 20.7 7.4 73 66-145 46-119 (175)
429 PF11399 DUF3192: Protein of u 21.2 76 0.0016 22.5 1.9 17 135-151 80-96 (102)
430 cd02127 PA_hPAP21_like PA_hPAP 21.2 89 0.0019 22.3 2.4 62 81-145 34-97 (118)
431 cd00887 MoeA MoeA family. Memb 21.0 2.7E+02 0.0059 24.1 5.7 62 94-158 196-257 (394)
432 PRK09860 putative alcohol dehy 21.0 4.4E+02 0.0095 22.7 7.0 48 82-130 32-83 (383)
433 PF11238 DUF3039: Protein of u 20.9 56 0.0012 20.7 1.1 13 90-102 45-57 (58)
434 PF14237 DUF4339: Domain of un 20.9 1.2E+02 0.0027 17.5 2.6 24 140-163 4-29 (45)
435 PF07894 DUF1669: Protein of u 20.8 5.1E+02 0.011 21.8 7.5 15 67-81 131-145 (284)
436 COG3917 NahD 2-hydroxychromene 20.7 1.8E+02 0.0039 23.0 4.0 24 133-156 173-196 (203)
437 cd03082 TRX_Fd_NuoE_W_FDH_beta 20.6 1.5E+02 0.0032 19.2 3.1 18 134-151 44-61 (72)
438 PRK12571 1-deoxy-D-xylulose-5- 20.4 3.6E+02 0.0078 25.2 6.7 68 82-153 505-573 (641)
439 TIGR02667 moaB_proteo molybden 20.4 3.8E+02 0.0082 20.1 5.9 61 95-157 24-85 (163)
440 TIGR03239 GarL 2-dehydro-3-deo 20.1 4.8E+02 0.01 21.1 7.2 52 93-144 20-71 (249)
441 COG4822 CbiK Cobalamin biosynt 20.1 4.9E+02 0.011 21.3 7.5 95 73-171 125-230 (265)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.97 E-value=5e-30 Score=181.80 Aligned_cols=97 Identities=38% Similarity=0.652 Sum_probs=90.7
Q ss_pred HHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHH
Q 030613 76 KKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVK 155 (174)
Q Consensus 76 ~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~ 155 (174)
+++++.++|+||++++||||.+++++|++++++|+++|||.. ++..+.++.+.+++|+++||+|||||++|||+||+.+
T Consensus 2 ~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~-~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKE-PAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred hhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCC-ccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 577899999999999999999999999999999999999975 4556778888899999999999999999999999999
Q ss_pred HHhhCchHHHHHhccccc
Q 030613 156 LYRKGELEPLLSEAKSAE 173 (174)
Q Consensus 156 l~~~g~L~~~L~~~g~~~ 173 (174)
++++|+|+++|+++|++|
T Consensus 81 l~~~G~L~~~l~~~~~~~ 98 (99)
T TIGR02189 81 LHISGSLVPMLKQAGALW 98 (99)
T ss_pred HHHcCCHHHHHHHhCccc
Confidence 999999999999999975
No 2
>PHA03050 glutaredoxin; Provisional
Probab=99.96 E-value=6e-29 Score=178.86 Aligned_cols=101 Identities=24% Similarity=0.481 Sum_probs=94.2
Q ss_pred HHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCC---CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEe
Q 030613 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV---EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIG 148 (174)
Q Consensus 72 ~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v---~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iG 148 (174)
++++++++++++|+||+++|||||.+++++|+++++ +|+++||+.. .++.+.++.+.+.+|+++||+|||||++||
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~-~~~~~~~~~l~~~tG~~tVP~IfI~g~~iG 81 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEF-KPENELRDYFEQITGGRTVPRIFFGKTSIG 81 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCC-CCCHHHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 578999999999999999999999999999999999 7889999864 346788999999999999999999999999
Q ss_pred cchHHHHHHhhCchHHHHHhccccc
Q 030613 149 GCTDTVKLYRKGELEPLLSEAKSAE 173 (174)
Q Consensus 149 G~del~~l~~~g~L~~~L~~~g~~~ 173 (174)
|+||+.+++++|+|.++|+.+|++.
T Consensus 82 G~ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 82 GYSDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred ChHHHHHHHHcCCHHHHHHHccccc
Confidence 9999999999999999999999874
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.96 E-value=5e-29 Score=180.66 Aligned_cols=99 Identities=23% Similarity=0.576 Sum_probs=93.1
Q ss_pred hHHHHHHHHhcCCCEEEEEe-----CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECC
Q 030613 70 RLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
...+.++++++.++|+||++ ++||||++|+++|++++++|.++||+. +.++++.|.+++|++|||||||||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~----d~~~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ----NPDIRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC----CHHHHHHHHHHhCCCCCCeEEECC
Confidence 46789999999999999999 499999999999999999999999985 467899999999999999999999
Q ss_pred eEEecchHHHHHHhhCchHHHHHhcccc
Q 030613 145 KHIGGCTDTVKLYRKGELEPLLSEAKSA 172 (174)
Q Consensus 145 ~~iGG~del~~l~~~g~L~~~L~~~g~~ 172 (174)
++|||+|++.+++++|+|+++|+++|++
T Consensus 79 ~~IGG~ddl~~l~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 79 ELVGGCDIVIEMYQRGELQQLIKETAAK 106 (115)
T ss_pred EEEcChHHHHHHHHCCCHHHHHHHHHhh
Confidence 9999999999999999999999999875
No 4
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=175.12 Aligned_cols=102 Identities=54% Similarity=0.856 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecc
Q 030613 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGC 150 (174)
Q Consensus 71 ~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~ 150 (174)
..+.++++++.++||||++++||||++++.+|.+.++.+.++|+|.. +++.++++.+.+.+|+++||+|||+|++|||+
T Consensus 3 ~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~ 81 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDED-EDGSEIQKALKKLTGQRTVPNVFIGGKFIGGA 81 (104)
T ss_pred HHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCC-CCcHHHHHHHHHhcCCCCCCEEEECCEEEcCH
Confidence 35679999999999999999999999999999999999999999998 68889999999999999999999999999999
Q ss_pred hHHHHHHhhCchHHHHHhccccc
Q 030613 151 TDTVKLYRKGELEPLLSEAKSAE 173 (174)
Q Consensus 151 del~~l~~~g~L~~~L~~~g~~~ 173 (174)
+|+.++|.+|+|.++|+.+|++|
T Consensus 82 ~dl~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 82 SDLMALHKSGELVPLLKEAGALW 104 (104)
T ss_pred HHHHHHHHcCCHHHHHHHhhccC
Confidence 99999999999999999999987
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.94 E-value=2.1e-26 Score=162.67 Aligned_cols=91 Identities=31% Similarity=0.661 Sum_probs=84.9
Q ss_pred HHHHHHHhcCCCEEEEEe-----CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeE
Q 030613 72 EESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKH 146 (174)
Q Consensus 72 ~~~l~~~i~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~ 146 (174)
.+.++++++.++|+||++ ++||||.+++++|+++|++|+++||+. +++.++++.+++|+++||+|||||++
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~----~~~~~~~l~~~tg~~tvP~vfi~g~~ 77 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE----DPEIRQGIKEYSNWPTIPQLYVKGEF 77 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC----CHHHHHHHHHHhCCCCCCEEEECCEE
Confidence 467899999999999998 899999999999999999999999974 46788889999999999999999999
Q ss_pred EecchHHHHHHhhCchHHHH
Q 030613 147 IGGCTDTVKLYRKGELEPLL 166 (174)
Q Consensus 147 iGG~del~~l~~~g~L~~~L 166 (174)
|||+||+.+++++|+|.++|
T Consensus 78 iGG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 78 VGGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred EeChHHHHHHHHCcChHHhC
Confidence 99999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.92 E-value=1.6e-24 Score=150.80 Aligned_cols=85 Identities=29% Similarity=0.610 Sum_probs=79.0
Q ss_pred HHHHhcCCCEEEEEe-----CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEec
Q 030613 75 VKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGG 149 (174)
Q Consensus 75 l~~~i~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG 149 (174)
|+++++.++|+||++ ++||||.+++++|++++++|+.+||+. +.++++++.+.+|+.++|+|||||++|||
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g~~iGG 76 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNGELVGG 76 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECCEEEeC
Confidence 357889999999998 699999999999999999999999975 47888999999999999999999999999
Q ss_pred chHHHHHHhhCchH
Q 030613 150 CTDTVKLYRKGELE 163 (174)
Q Consensus 150 ~del~~l~~~g~L~ 163 (174)
++++.+++++|+|+
T Consensus 77 ~~~l~~l~~~g~L~ 90 (90)
T cd03028 77 CDIVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHHHcCCcC
Confidence 99999999999985
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.91 E-value=1.2e-23 Score=166.51 Aligned_cols=97 Identities=21% Similarity=0.456 Sum_probs=90.6
Q ss_pred chhHHHHHHHHhcCCCEEEEEe-----CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 68 GSRLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 68 ~~~~~~~l~~~i~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
.+.+.+.++++++.++|+||++ |+||||++++++|++++++|..+||+. +++.++.+++++|+++||+|||
T Consensus 99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----DPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----CHHHHHHHHHHhCCCCCCeEEE
Confidence 4568899999999999999999 689999999999999999999999985 4678999999999999999999
Q ss_pred CCeEEecchHHHHHHhhCchHHHHHh
Q 030613 143 GGKHIGGCTDTVKLYRKGELEPLLSE 168 (174)
Q Consensus 143 ~G~~iGG~del~~l~~~g~L~~~L~~ 168 (174)
||++|||+|++++++++|+|+++|.+
T Consensus 175 ~G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 175 NGELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred CCEEEcChHHHHHHHHcCChhhhhhh
Confidence 99999999999999999999999875
No 8
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.8e-23 Score=144.70 Aligned_cols=97 Identities=28% Similarity=0.630 Sum_probs=90.7
Q ss_pred hHHHHHHHHhcCCCEEEEEe-----CCChhHHHHHHHHHHcC-CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEEC
Q 030613 70 RLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLG-VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG 143 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~-v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~ 143 (174)
+..+++++.++.++|++|.| |.|+|+.++.++|..+| ++|..+||-. ++++++.++++++|+|+||+||+
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~----d~eiR~~lk~~s~WPT~PQLyi~ 78 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQ----DPEIRQGLKEYSNWPTFPQLYVN 78 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeecc----CHHHHhccHhhcCCCCCceeeEC
Confidence 56789999999999999998 77999999999999999 7888888875 58999999999999999999999
Q ss_pred CeEEecchHHHHHHhhCchHHHHHhcc
Q 030613 144 GKHIGGCTDTVKLYRKGELEPLLSEAK 170 (174)
Q Consensus 144 G~~iGG~del~~l~~~g~L~~~L~~~g 170 (174)
|++|||+|.+.+++++|+|+++|++++
T Consensus 79 GEfvGG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 79 GEFVGGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred CEEeccHHHHHHHHHcchHHHHHHhcC
Confidence 999999999999999999999998864
No 9
>PRK10638 glutaredoxin 3; Provisional
Probab=99.89 E-value=7e-23 Score=140.21 Aligned_cols=82 Identities=34% Similarity=0.636 Sum_probs=75.6
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhhCc
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGE 161 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~g~ 161 (174)
.+|+||++++||+|++++.+|++++++|+.+||+. +.+.++.+.+.+|+.++|+||+||++|||++++.+++.+|+
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~----~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~ 77 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDG----DAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGG 77 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCC----CHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCC
Confidence 47999999999999999999999999999999986 34566778888999999999999999999999999999999
Q ss_pred hHHHHH
Q 030613 162 LEPLLS 167 (174)
Q Consensus 162 L~~~L~ 167 (174)
|.++|+
T Consensus 78 l~~~~~ 83 (83)
T PRK10638 78 LDPLLK 83 (83)
T ss_pred HHHHhC
Confidence 999885
No 10
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.89 E-value=1.3e-22 Score=137.30 Aligned_cols=79 Identities=41% Similarity=0.806 Sum_probs=72.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhhCchH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELE 163 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~g~L~ 163 (174)
|+||++++||+|.+++++|++++++|++++|+. +++.++.+.+.+|+.++|+|||||++|||++++.+++++|+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~----~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~ 76 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDG----DPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLD 76 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecC----CHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChh
Confidence 689999999999999999999999999999986 3566667788889999999999999999999999999999999
Q ss_pred HHH
Q 030613 164 PLL 166 (174)
Q Consensus 164 ~~L 166 (174)
++|
T Consensus 77 ~~l 79 (79)
T TIGR02181 77 PLL 79 (79)
T ss_pred hhC
Confidence 875
No 11
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.87 E-value=6.6e-22 Score=134.26 Aligned_cols=82 Identities=49% Similarity=0.938 Sum_probs=75.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC--CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhhCc
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE--PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGE 161 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~--~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~g~ 161 (174)
|++|+++|||+|.+++++|++++++ |+.++|+.. ++..+.++.+.+.+|..++|+||+||++|||++++.+++++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~-~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~ 79 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQL-SNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGK 79 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCC-CChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCC
Confidence 6899999999999999999999998 999999875 3456778888888999999999999999999999999999999
Q ss_pred hHHHH
Q 030613 162 LEPLL 166 (174)
Q Consensus 162 L~~~L 166 (174)
|.++|
T Consensus 80 l~~~~ 84 (84)
T TIGR02180 80 LAELL 84 (84)
T ss_pred hhhhC
Confidence 99875
No 12
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.7e-22 Score=134.95 Aligned_cols=78 Identities=41% Similarity=0.751 Sum_probs=71.1
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhhCch
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGEL 162 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~g~L 162 (174)
.|+||++++||||.+++++|+++|++|++++++.. ...+.++++++.+|+++||+|||||++|||++++.++...+.|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~--~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDD--EPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCC--cHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 58999999999999999999999999999999974 3357788888887999999999999999999999999888776
No 13
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.86 E-value=2.9e-21 Score=130.79 Aligned_cols=81 Identities=54% Similarity=0.981 Sum_probs=74.5
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhhCch
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGEL 162 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~g~L 162 (174)
+|++|++++||+|.+++++|++++++|+.++++.. ++..+.++.+++++|+.++|+||++|+++||++++.++.++|+|
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l 79 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQH-EDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKL 79 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCC-CChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCc
Confidence 58999999999999999999999999999999975 34466778888999999999999999999999999999999999
Q ss_pred HH
Q 030613 163 EP 164 (174)
Q Consensus 163 ~~ 164 (174)
++
T Consensus 80 ~~ 81 (82)
T cd03419 80 VK 81 (82)
T ss_pred cC
Confidence 75
No 14
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.86 E-value=3.9e-21 Score=145.06 Aligned_cols=83 Identities=24% Similarity=0.456 Sum_probs=75.7
Q ss_pred CEEEEEeC------CChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCC----CcccEEEECCeEEecchH
Q 030613 83 PVVVYSKT------WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ----HTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 83 ~Vviy~~~------~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~----~tvP~IfI~G~~iGG~de 152 (174)
+|+||+++ +||+|.+++++|+.++++|+++||++ +.+.+++|+++++. .++|+|||+|++|||+|+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~----~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~de 76 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSM----DSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEE 76 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCC----CHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHH
Confidence 58999999 99999999999999999999999986 35667777777665 899999999999999999
Q ss_pred HHHHHhhCchHHHHHhc
Q 030613 153 TVKLYRKGELEPLLSEA 169 (174)
Q Consensus 153 l~~l~~~g~L~~~L~~~ 169 (174)
+.+++++|+|.++|++.
T Consensus 77 l~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 77 VLRLNESGELRKLLKGI 93 (147)
T ss_pred HHHHHHcCCHHHHHhhc
Confidence 99999999999999875
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.85 E-value=1.2e-20 Score=125.92 Aligned_cols=74 Identities=41% Similarity=0.732 Sum_probs=65.8
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCC-cccEEEECCeEEecchHHHHHHhhC
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQH-TVPNVFIGGKHIGGCTDTVKLYRKG 160 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~-tvP~IfI~G~~iGG~del~~l~~~g 160 (174)
+|+||++++||+|.+++.+|++++++|++++|+. + .+.++.+.+.+|.. ++|+|||||++|||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~---~-~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDG---D-PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCC---C-HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 4899999999999999999999999999999986 2 45555566666777 9999999999999999999999876
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.84 E-value=1.9e-20 Score=124.95 Aligned_cols=71 Identities=32% Similarity=0.527 Sum_probs=65.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+|+||++++||+|++|+++|++++++|+.+||+. +++.++++++++|..++|+||+||++|||++|+.+++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~----~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDI----FPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 6999999999999999999999999999999986 3566777888889999999999999999999999875
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.82 E-value=6.2e-20 Score=124.59 Aligned_cols=75 Identities=33% Similarity=0.517 Sum_probs=64.6
Q ss_pred HhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 78 TVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 78 ~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+-++++|+||++++||+|++++++|+++|++|+.++++.. .+. +.+...+|+.++|+||+||++|||++++.++.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~----~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND----ARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC----hHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 3467889999999999999999999999999999999863 222 34566789999999999999999999998763
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.81 E-value=1.4e-19 Score=120.37 Aligned_cols=70 Identities=31% Similarity=0.528 Sum_probs=61.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+|+||++++||+|.+++++|++++++|+.++++.. .+ .+.++..+|..++|+|||||++|||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~----~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKD----IT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCC----hh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 69999999999999999999999999999999863 22 345667789999999999999999999998764
No 19
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.80 E-value=4.8e-19 Score=122.19 Aligned_cols=73 Identities=34% Similarity=0.667 Sum_probs=59.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHcC-----CCCeEEEecccCCCcHHHHHHHHHHhCC--CcccEEEECCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLG-----VEPLVIELDEMGPQGPQLQKLLERLTGQ--HTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~vdid~~~~~~~~~~~~l~~~~g~--~tvP~IfI~G~~iGG~del~~l 156 (174)
|+||+++|||+|.+|+++|++++ ++|+.+|++. +. ..++.+.+.+|+ .+||+|||||++|||+||+.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~---~~-~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~ 77 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHA---EG-ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQL 77 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCC---CH-HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHH
Confidence 79999999999999999999985 4577777764 22 223446677776 8999999999999999999999
Q ss_pred HhhC
Q 030613 157 YRKG 160 (174)
Q Consensus 157 ~~~g 160 (174)
++++
T Consensus 78 ~~~~ 81 (86)
T TIGR02183 78 VKEN 81 (86)
T ss_pred HHhc
Confidence 7664
No 20
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.79 E-value=6.9e-19 Score=120.80 Aligned_cols=74 Identities=30% Similarity=0.549 Sum_probs=62.2
Q ss_pred CCEEEEEeCCChhHHHHHHHHHH-----cCCCCeEEEecccCCCcHHHHHHHHHHhCC--CcccEEEECCeEEecchHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKR-----LGVEPLVIELDEMGPQGPQLQKLLERLTGQ--HTVPNVFIGGKHIGGCTDTV 154 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~-----~~v~~~~vdid~~~~~~~~~~~~l~~~~g~--~tvP~IfI~G~~iGG~del~ 154 (174)
++|+||++++||+|++|+++|++ .+++|+.+|++.. ..+ .+.+.+.+|+ .+||+|||||++|||++|+.
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~---~~~-~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~ 76 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAE---GIS-KADLEKTVGKPVETVPQIFVDQKHIGGCTDFE 76 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCC---hHH-HHHHHHHHCCCCCcCCEEEECCEEEcCHHHHH
Confidence 36999999999999999999999 7899999999862 323 3446666665 89999999999999999999
Q ss_pred HHHhh
Q 030613 155 KLYRK 159 (174)
Q Consensus 155 ~l~~~ 159 (174)
++++.
T Consensus 77 ~~~~~ 81 (85)
T PRK11200 77 AYVKE 81 (85)
T ss_pred HHHHH
Confidence 88754
No 21
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.5e-19 Score=138.95 Aligned_cols=95 Identities=25% Similarity=0.454 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCCCEEEEEe-----CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCe
Q 030613 71 LEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK 145 (174)
Q Consensus 71 ~~~~l~~~i~~~~Vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~ 145 (174)
..+.+.++++.++|++|.| |.|++.+++..+|++++++|..+||-. ++++++.++.++.|+|+||+||+|+
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~----DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLT----DEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccC----CHHHHHHhhhhcCCCCccceeECCE
Confidence 5569999999999999999 679999999999999999999999975 5899999999999999999999999
Q ss_pred EEecchHHHHHHhhCchHHHHHhc
Q 030613 146 HIGGCTDTVKLYRKGELEPLLSEA 169 (174)
Q Consensus 146 ~iGG~del~~l~~~g~L~~~L~~~ 169 (174)
++||+|.+.+++++|+|+..|+++
T Consensus 204 FiGGlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 204 FIGGLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred eccCcHHHHHHhhcccHHHHhhcC
Confidence 999999999999999999999864
No 22
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.78 E-value=9.9e-19 Score=151.62 Aligned_cols=88 Identities=25% Similarity=0.388 Sum_probs=72.9
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHH-----HHhCCCcccEEEECCeEEecchHHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLE-----RLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~-----~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
.+|+||++++||+|+++|++|+++|++|+++||++. +...+..+.+. ..+|..+||+|||||++|||||++.+
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~-~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~- 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD-VKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA- 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC-hhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH-
Confidence 469999999999999999999999999999999864 12222222222 23689999999999999999999987
Q ss_pred HhhCchHHHHHhcccc
Q 030613 157 YRKGELEPLLSEAKSA 172 (174)
Q Consensus 157 ~~~g~L~~~L~~~g~~ 172 (174)
..|+|.++|++.|+.
T Consensus 80 -~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 80 -RAGEVIARVKGSSLT 94 (410)
T ss_pred -HhCCHHHHhcCCccc
Confidence 899999999988764
No 23
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.76 E-value=7.5e-18 Score=109.87 Aligned_cols=71 Identities=41% Similarity=0.651 Sum_probs=64.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+|++|++++||+|++++.+|++++++|..+|++. +.+.++.+++.+|..++|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~----~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILE----DGELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCC----CHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 5899999999999999999999999999999986 3457777888889999999999999999999998875
No 24
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.72 E-value=5.3e-17 Score=113.49 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=69.5
Q ss_pred EEEEEeCC------ChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhC----CCcccEEEECCeEEecchHH
Q 030613 84 VVVYSKTW------CSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTG----QHTVPNVFIGGKHIGGCTDT 153 (174)
Q Consensus 84 Vviy~~~~------Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g----~~tvP~IfI~G~~iGG~del 153 (174)
|+||+++- =..|.+++.+|+.++++|+++||+. +++.++++.+.+| .+++|||||||+|||||||+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~----d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl 77 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM----NEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAF 77 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCC----CHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHH
Confidence 67887753 2589999999999999999999986 4666777777765 48999999999999999999
Q ss_pred HHHHhhCchHHHHH
Q 030613 154 VKLYRKGELEPLLS 167 (174)
Q Consensus 154 ~~l~~~g~L~~~L~ 167 (174)
.+++++|+|.++|+
T Consensus 78 ~~l~e~g~L~~lLk 91 (92)
T cd03030 78 FEAKENNTLEEFLK 91 (92)
T ss_pred HHHHhCCCHHHHhC
Confidence 99999999999985
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.71 E-value=4.7e-17 Score=104.53 Aligned_cols=60 Identities=38% Similarity=0.665 Sum_probs=55.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHI 147 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~i 147 (174)
|+||++++||+|.+++++|+++|++|+++||+. +++.++.+++.+|..++|+|||||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~----~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDE----DEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGG----SHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEccccc----chhHHHHHHHHcCCCccCEEEECCEEC
Confidence 789999999999999999999999999999997 357788888888999999999999986
No 26
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=104.24 Aligned_cols=64 Identities=20% Similarity=0.366 Sum_probs=56.8
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecch
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCT 151 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~d 151 (174)
+|+||++++||+|.+++++|+++|++|+++||+. +++..+.++. .|..++|+|+++|+.++||+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence 6999999999999999999999999999999986 3455555655 48999999999999999996
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.62 E-value=1.7e-15 Score=100.85 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=55.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCe-EEecchH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK-HIGGCTD 152 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~-~iGG~de 152 (174)
|+||++++||+|++++++|++++++|+.+||+. +++..+.++.. |..+||+|+++|+ ++|||+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~----~~~~~~~~~~~-g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDE----QPEAIDYVKAQ-GFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHc-CCcccCEEEECCCcEEeccCH
Confidence 689999999999999999999999999999986 34556666664 8999999999775 9999963
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.49 E-value=1.7e-13 Score=89.58 Aligned_cols=66 Identities=26% Similarity=0.457 Sum_probs=55.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~de 152 (174)
+|++|+.+|||+|++++.+|++.+++|..+|++. .++..+.+.+..|..++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~----~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEK----DSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccC----CHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 3899999999999999999999999999999985 23444445556699999999999999999853
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.42 E-value=1.4e-12 Score=85.21 Aligned_cols=66 Identities=32% Similarity=0.589 Sum_probs=58.1
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~de 152 (174)
+|++|+.+|||+|.+++.+|++.+++|..++++. +.+..+.+.+..+..++|+|+++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~----~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDE----DPEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCC----CHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 4899999999999999999999999999999975 34555667777788999999999999999974
No 30
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.38 E-value=3.1e-12 Score=84.86 Aligned_cols=65 Identities=23% Similarity=0.509 Sum_probs=53.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHh-CCCcccEEEE-CCeEEecch
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT-GQHTVPNVFI-GGKHIGGCT 151 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~-g~~tvP~IfI-~G~~iGG~d 151 (174)
+|++|+.+|||+|++++.+|++.+++|+.+|++. +....+.+..++ +..++|+|++ ||+.+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~----~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEE----DEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcC----CHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 4899999999999999999999999999999886 345556666665 8899999976 667776553
No 31
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.4e-12 Score=106.06 Aligned_cols=86 Identities=27% Similarity=0.470 Sum_probs=72.8
Q ss_pred CCCEEEEEeC------CChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhC----CCcccEEEECCeEEecc
Q 030613 81 ENPVVVYSKT------WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTG----QHTVPNVFIGGKHIGGC 150 (174)
Q Consensus 81 ~~~Vviy~~~------~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g----~~tvP~IfI~G~~iGG~ 150 (174)
...||||+++ +--.|..++.+|+.++|.|.+.||..+ ...+++|+++-| ..+.|+|||+|++|||.
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd----~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGga 205 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMD----SEFREELQELLGEDEKAVSLPRVFVKGRYIGGA 205 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEeccccc----HHHHHHHHHHHhcccccCccCeEEEccEEeccH
Confidence 4579999984 568999999999999999999999984 445555555433 56799999999999999
Q ss_pred hHHHHHHhhCchHHHHHhcc
Q 030613 151 TDTVKLYRKGELEPLLSEAK 170 (174)
Q Consensus 151 del~~l~~~g~L~~~L~~~g 170 (174)
+++.+|++.|+|.++|++.-
T Consensus 206 eeV~~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 206 EEVVRLNEEGKLGKLLKGIP 225 (281)
T ss_pred HHhhhhhhcchHHHHHhcCC
Confidence 99999999999999998753
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.25 E-value=1.4e-11 Score=80.14 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=45.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHHc-----CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEe
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIG 148 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~-----~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iG 148 (174)
+|++|+++|||+|++++++|+++ ++++..+|++.. ++ +.+..|..++|+++++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~-------~~-l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF-------PD-LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC-------Hh-HHHHcCCcccCEEEECCEEEE
Confidence 48999999999999999999986 455666666542 22 344458999999999999875
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.24 E-value=1e-10 Score=82.69 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=61.4
Q ss_pred CEEEEEeCCC------hhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhC---------CCcccEEEECCeEE
Q 030613 83 PVVVYSKTWC------SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTG---------QHTVPNVFIGGKHI 147 (174)
Q Consensus 83 ~Vviy~~~~C------p~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g---------~~tvP~IfI~G~~i 147 (174)
.|.||+++.- ..|.++..+|+.++++|+.+||.. +++.++.+.+..| .+-.|+||+||+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~----~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAM----DEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYC 77 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-----HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcC----CHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEE
Confidence 4778887543 467899999999999999999985 5677777777653 34468999999999
Q ss_pred ecchHHHHHHhhCchHHHHH
Q 030613 148 GGCTDTVKLYRKGELEPLLS 167 (174)
Q Consensus 148 GG~del~~l~~~g~L~~~L~ 167 (174)
|+++++.++.+.++|.++|+
T Consensus 78 Gdye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 78 GDYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EEHHHHHHHHCTT-HHHHHT
T ss_pred eeHHHHHHHHhhCHHHHHhC
Confidence 99999999999999999986
No 34
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.01 E-value=3.3e-09 Score=71.11 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=57.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEEecchHHHHHHh
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHIGGCTDTVKLYR 158 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~iGG~del~~l~~ 158 (174)
+++|+.+.||+|.+++.+|+++|++|+.++++. +....+.+.+.++..+||++.. +|..+.+.+.+.++.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~----~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPK----GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCC----ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 689999999999999999999999999999864 2333445667778889999977 3678888887776654
No 35
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.98 E-value=8.4e-10 Score=76.54 Aligned_cols=71 Identities=21% Similarity=0.357 Sum_probs=54.5
Q ss_pred hHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHc-----CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECC
Q 030613 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~-----~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
..++.++++.+.-.|.+|+.+|||+|..++++++++ ++++..+|++.. .+..++ +|..++|.+++||
T Consensus 2 ~~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-------~e~a~~-~~V~~vPt~vidG 73 (89)
T cd03026 2 DLLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-------QDEVEE-RGIMSVPAIFLNG 73 (89)
T ss_pred hHHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-------HHHHHH-cCCccCCEEEECC
Confidence 356778877777789999999999999999999875 455566666542 333334 4999999999999
Q ss_pred eEEe
Q 030613 145 KHIG 148 (174)
Q Consensus 145 ~~iG 148 (174)
+.++
T Consensus 74 ~~~~ 77 (89)
T cd03026 74 ELFG 77 (89)
T ss_pred EEEE
Confidence 8665
No 36
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.96 E-value=7e-09 Score=66.09 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=56.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
+++|+.++||+|.+++.+|+.++++|+.++++... .... .+.+.++..++|.+.++|..+++...+.++
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~-~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGE-GEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCC-CCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 36899999999999999999999999999988641 1111 455677899999999999999998776654
No 37
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.93 E-value=1.1e-08 Score=68.14 Aligned_cols=68 Identities=15% Similarity=0.370 Sum_probs=54.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEEC----CeEEecchHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG----GKHIGGCTDTVKLY 157 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~----G~~iGG~del~~l~ 157 (174)
++++|+.+.||+|++++.+|.++|++|+.++++.. . ...+ +..+..++|+++++ |+.+.....+.++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~-----~-~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL 72 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV-----S-RKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTL 72 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch-----h-HHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence 58899999999999999999999999999988642 1 1223 34688899999987 77888887776654
No 38
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.88 E-value=6.5e-09 Score=69.61 Aligned_cols=62 Identities=19% Similarity=0.366 Sum_probs=42.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHH----cCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCe-EEecc
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKR----LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK-HIGGC 150 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~----~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~-~iGG~ 150 (174)
+|++|+.+|||+|+.++..|++ ++..+..+.||.. +. ++..++ .|..++|+++++|+ .+.|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~--~~---~~~~~~-~~v~~vPt~~~~g~~~~~G~ 68 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM--EN---PQKAME-YGIMAVPAIVINGDVEFIGA 68 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc--cC---HHHHHH-cCCccCCEEEECCEEEEecC
Confidence 4889999999999999999875 3433444455432 12 222333 58999999999997 44443
No 39
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.88 E-value=9.3e-09 Score=67.53 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=54.3
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEEC-CeEEecchHHHHHH
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG-GKHIGGCTDTVKLY 157 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~-G~~iGG~del~~l~ 157 (174)
.+|+.++||+|.+++.+|..+|++|+.+.++.. .. ...+ +..+..++|+++++ |..+++...+.++.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~--~~---~~~~-~~~~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQND--DE---ATPI-RMIGAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC--ch---HHHH-HhcCCCccCEEEeCCCeEeehHHHHHHHH
Confidence 589999999999999999999999999888752 11 1222 34577899999997 89999998887764
No 40
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.80 E-value=4e-09 Score=94.03 Aligned_cols=96 Identities=17% Similarity=0.253 Sum_probs=74.8
Q ss_pred cccccccceee-------------cccCCCchhHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEeccc
Q 030613 51 RRRRYGAVSVQ-------------AMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (174)
Q Consensus 51 ~~~~~~~~~~~-------------~~~s~~~~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~ 117 (174)
+.||++.|.++ .+....+++.++.++++-+...|.+|.++.||||.++++.++++.+....|..+..
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~i 154 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMI 154 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEE
Confidence 47777777776 34567788999999988888889999999999999999999987766444444443
Q ss_pred CCCcHHHHHHHHHHhCCCcccEEEECCeEEec
Q 030613 118 GPQGPQLQKLLERLTGQHTVPNVFIGGKHIGG 149 (174)
Q Consensus 118 ~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG 149 (174)
+..+.++...++ +..+||++||||+.++.
T Consensus 155 --d~~~~~~~~~~~-~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 155 --DGALFQDEVEAL-GIQGVPAVFLNGEEFHN 183 (515)
T ss_pred --EchhCHHHHHhc-CCcccCEEEECCcEEEe
Confidence 455667766554 88899999999986643
No 41
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.79 E-value=4.6e-09 Score=93.62 Aligned_cols=95 Identities=19% Similarity=0.230 Sum_probs=73.8
Q ss_pred cccccccceee-------------cccCCCchhHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEeccc
Q 030613 51 RRRRYGAVSVQ-------------AMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (174)
Q Consensus 51 ~~~~~~~~~~~-------------~~~s~~~~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~ 117 (174)
+.+|++.|.++ .+...++++.++.++++-+...|.+|.+++||||.++++.+++..+....+..+..
T Consensus 74 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i 153 (517)
T PRK15317 74 GVRFAGIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI 153 (517)
T ss_pred eEEEEecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE
Confidence 57777777775 45567888999999998888899999999999999999999987665444444443
Q ss_pred CCCcHHHHHHHHHHhCCCcccEEEECCeEEe
Q 030613 118 GPQGPQLQKLLERLTGQHTVPNVFIGGKHIG 148 (174)
Q Consensus 118 ~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iG 148 (174)
+..+.++...++ +..+||++|+||+.+.
T Consensus 154 --d~~~~~~~~~~~-~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 154 --DGALFQDEVEAR-NIMAVPTVFLNGEEFG 181 (517)
T ss_pred --EchhCHhHHHhc-CCcccCEEEECCcEEE
Confidence 344556655554 8999999999998654
No 42
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.76 E-value=3.9e-08 Score=64.33 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=54.3
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE-CCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI-GGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI-~G~~iGG~del~~l 156 (174)
+++|+.++||+|.+++-+|+.++++|+.++++.. .+....+.+.+.+...++|++.+ ||..+.....+.++
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~--~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLA--AGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecc--cCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 3689999999999999999999999999888753 22222344567778889999997 66677666655543
No 43
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.75 E-value=4.7e-08 Score=65.61 Aligned_cols=55 Identities=20% Similarity=0.436 Sum_probs=41.6
Q ss_pred CEEEEEeCCChhHHHH----HHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEE
Q 030613 83 PVVVYSKTWCSYSSEV----KLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHI 147 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~a----k~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~i 147 (174)
.|.+|+ +|||+|+.+ ++++++++.++++++|+.. ++ ..+ .|..++|++++||+.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~----~~----a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDM----NE----ILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH----HH----HHH-cCCCcCCEEEECCEEE
Confidence 366776 999999999 5566678888888888731 22 333 4999999999999755
No 44
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.73 E-value=5.8e-08 Score=63.84 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=53.9
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEEC-CeEEecchHHHHH
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG-GKHIGGCTDTVKL 156 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~-G~~iGG~del~~l 156 (174)
++|+.++||+|.+++.+|+++|++|+.++++.. +. .+.+.+.++..+||++..+ |..+.....+.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~--~~---~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK--NK---PAEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC--CC---CHHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 689999999999999999999999999998863 11 2345567788899999996 8888776665543
No 45
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.72 E-value=8.3e-08 Score=63.17 Aligned_cols=71 Identities=25% Similarity=0.273 Sum_probs=56.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
+++|+.+.||+|.+++-+|+++|++|+.++++.. .+....+.+.+.+....+|.+..+|..+.....+.++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~--~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLM--KGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCc--cCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 4689999999999999999999999999988753 2333445566777788999999998877776666554
No 46
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.72 E-value=9.9e-09 Score=73.88 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=38.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~ 130 (174)
|+||+.++||+|++|+++|+++|++|+++|+...+....++.+.++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 57999999999999999999999999999998754444555555544
No 47
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.70 E-value=7.9e-08 Score=63.01 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=54.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+++|+.+.||+|.+++.+|+..|++|+.++++.. .. .+.+.+.....++|++..+|..+.....+.++.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~----~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NP----PEDLAELNPYGTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC-CC----CHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 4799999999999999999999999999888752 11 233455667889999988888887777666554
No 48
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.70 E-value=1.3e-08 Score=72.31 Aligned_cols=48 Identities=25% Similarity=0.427 Sum_probs=39.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
|+||+.++||+|++++++|++.|++|+++|+...+....++.+.+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 579999999999999999999999999999987544555666655443
No 49
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.69 E-value=1.1e-07 Score=65.52 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=57.5
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEEC-CeEEecchHHHHH
Q 030613 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG-GKHIGGCTDTVKL 156 (174)
Q Consensus 81 ~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~-G~~iGG~del~~l 156 (174)
...+++|+.+.||+|.+++.+|..+|++|+.++++.. .. .+.+.+.++..++|++.++ |..+.....+.++
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~--~~---~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK--DK---PDWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC--CC---cHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 3459999999999999999999999999999988753 11 2345567788899999998 8888877766654
No 50
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.63 E-value=1.9e-07 Score=69.16 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=38.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~ 130 (174)
|+||+.++||+|++|+++|+++|++|+++|+...+...+++.+.++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~ 48 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRM 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHH
Confidence 78999999999999999999999999999997653344445554444
No 51
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.62 E-value=2.7e-07 Score=60.25 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=56.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
+++|+.+.||+|.+++.+|+..|++|+.++++.. .+....+.+.+.+...++|.+..+|..+.....+.++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~--~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDIL--KGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCC--CcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999999998753 2233344455666788999999999888777666543
No 52
>PHA02125 thioredoxin-like protein
Probab=98.61 E-value=1.4e-07 Score=62.90 Aligned_cols=57 Identities=16% Similarity=0.416 Sum_probs=41.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEec
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGG 149 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG 149 (174)
|++|+.+||++|+.++.+|++. ++.+++||.. .. ++ +.+..+..++|++. +|+.++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~--~~---~~-l~~~~~v~~~PT~~-~g~~~~~ 58 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTD--EG---VE-LTAKHHIRSLPTLV-NTSTLDR 58 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCC--CC---HH-HHHHcCCceeCeEE-CCEEEEE
Confidence 7899999999999999999865 4566677652 22 23 34445899999987 7765543
No 53
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.59 E-value=5.8e-08 Score=87.40 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=68.2
Q ss_pred ccccccccceee-------------cccCCCchhHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHc-----CCCCeE
Q 030613 50 GRRRRYGAVSVQ-------------AMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLV 111 (174)
Q Consensus 50 ~~~~~~~~~~~~-------------~~~s~~~~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~-----~v~~~~ 111 (174)
.+.+|++.|.++ ......+++..+.++++-+...|.+|..++||+|.++.+.+++. +++.+.
T Consensus 433 ~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~ 512 (555)
T TIGR03143 433 TGLKFHGVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEM 512 (555)
T ss_pred cceEEEecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEE
Confidence 357788888876 34567788999999988788889999999999999998888764 355555
Q ss_pred EEecccCCCcHHHHHHHHHHhCCCcccEEEECCeE
Q 030613 112 IELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKH 146 (174)
Q Consensus 112 vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~ 146 (174)
+|+.. .++...+ ++..+||.++|||+.
T Consensus 513 i~~~~-------~~~~~~~-~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 513 IDVSH-------FPDLKDE-YGIMSVPAIVVDDQQ 539 (555)
T ss_pred EECcc-------cHHHHHh-CCceecCEEEECCEE
Confidence 55543 3444434 499999999999963
No 54
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.58 E-value=3.8e-07 Score=60.66 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=57.9
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHh
Q 030613 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYR 158 (174)
Q Consensus 86 iy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~ 158 (174)
+|+.++||+|.+++-+|+.+|++|+.++++.. +. .+.+.+..+..++|++..||..+.+...+.++.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~--~~---~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE--EK---RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT--ST---SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc--cc---hhHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 68999999999999999999999999999863 22 4555677789999999999999999988877653
No 55
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.57 E-value=1.5e-07 Score=67.84 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=40.0
Q ss_pred HHHhcCCCEEEE-EeCCChhHHHHHHHHHHcCCC-----CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 76 KKTVSENPVVVY-SKTWCSYSSEVKLLFKRLGVE-----PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 76 ~~~i~~~~Vviy-~~~~Cp~C~~ak~~L~~~~v~-----~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
+++.+...+++| +.+|||+|+.++.+|++.... +..+|++. . ++ +.+.++..++|++++
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~----~---~~-l~~~~~v~~vPt~~i 81 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE----D---KE-KAEKYGVERVPTTIF 81 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc----C---HH-HHHHcCCCcCCEEEE
Confidence 334455556665 679999999999999876533 33444443 2 23 445569999999888
No 56
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.54 E-value=5.3e-07 Score=65.16 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=39.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
|+||+.++|++|++|+++|++.|++|+.+|+...+....++.+.++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 789999999999999999999999999999976544455566655543
No 57
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.53 E-value=1.3e-07 Score=75.30 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=49.6
Q ss_pred CCCchhHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCC---eEEEecccCCCcHHHHHHHHHHhCCCcccEEE
Q 030613 65 SSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEP---LVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (174)
Q Consensus 65 s~~~~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~---~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If 141 (174)
..+.++.++.++..-+...|++|+.+|||+|..++.+++++...+ ..+.+|.. .. ++ +....|..++|+++
T Consensus 118 ~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~--~~---~~-~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 118 PGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN--EN---PD-LAEKYGVMSVPKIV 191 (215)
T ss_pred CCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC--CC---HH-HHHHhCCccCCEEE
Confidence 345566677777655555677899999999999999998764322 22233331 12 33 33445999999999
Q ss_pred ECCe
Q 030613 142 IGGK 145 (174)
Q Consensus 142 I~G~ 145 (174)
++++
T Consensus 192 i~~~ 195 (215)
T TIGR02187 192 INKG 195 (215)
T ss_pred EecC
Confidence 8654
No 58
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.51 E-value=1.6e-07 Score=68.06 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=54.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchH---HHHHHhhC
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTD---TVKLYRKG 160 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~de---l~~l~~~g 160 (174)
|+||+.++||+|++|+++|++.|++|+++|+...+....++.+.+... |...-..|--.|...-.... +..+ ...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~-~~~~~~lin~~~~~~k~l~~~~~~~~l-s~~ 78 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLL-EDGIDPLLNTRGQSYRALNTSNTFLDL-SDK 78 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHc-CCCHHHheeCCCcchhhCCchhhcccC-CHH
Confidence 579999999999999999999999999999987533444555555443 43223344445554433221 1222 234
Q ss_pred chHHHHHhcccc
Q 030613 161 ELEPLLSEAKSA 172 (174)
Q Consensus 161 ~L~~~L~~~g~~ 172 (174)
++.++|.+...+
T Consensus 79 e~~~~i~~~p~L 90 (117)
T TIGR01617 79 EALELLAEDPAL 90 (117)
T ss_pred HHHHHHHhCcce
Confidence 455555555444
No 59
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.50 E-value=3.8e-07 Score=61.89 Aligned_cols=53 Identities=26% Similarity=0.517 Sum_probs=38.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcC----CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECC
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLG----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~----v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
+|++|++++|+.|..++.+|.+.. ++++.+||+. +++ +.+.++. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~----l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPE----LFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THH----HHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHH----HHHHhcC-CCCEEEEcC
Confidence 489999999999999999999764 3345666664 333 3344464 899999999
No 60
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.49 E-value=1.3e-06 Score=63.87 Aligned_cols=78 Identities=13% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHHHhcCCC--EEEEEeCCChhHHHHHHHHHHc----CCCCeEEEecccC----CCcHHHHHHHHHH---hCCCcccE
Q 030613 73 ESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMG----PQGPQLQKLLERL---TGQHTVPN 139 (174)
Q Consensus 73 ~~l~~~i~~~~--Vviy~~~~Cp~C~~ak~~L~~~----~v~~~~vdid~~~----~~~~~~~~~l~~~---~g~~tvP~ 139 (174)
+.+.+.++..+ |+.|+.+|||+|+.+...|++. ++++-.+|++... .+..++++..+.+ ++...+|+
T Consensus 14 ~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT 93 (122)
T TIGR01295 14 VRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPT 93 (122)
T ss_pred HHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCE
Confidence 34555555443 6778999999999988877664 4556677777421 1112445544443 24556996
Q ss_pred EE--ECCeEEecc
Q 030613 140 VF--IGGKHIGGC 150 (174)
Q Consensus 140 If--I~G~~iGG~ 150 (174)
++ -+|+.++..
T Consensus 94 ~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 94 FVHITDGKQVSVR 106 (122)
T ss_pred EEEEeCCeEEEEE
Confidence 65 499877655
No 61
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.47 E-value=1.5e-07 Score=69.88 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=41.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
|+||+.++|+.|++|+++|+++|++|+++|+...+...+++.+.++..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKT 49 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHh
Confidence 789999999999999999999999999999987655666666666554
No 62
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.43 E-value=5.7e-07 Score=64.18 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=42.6
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
|+||+.++|+.|++|+++|++.|++|+++|+...+...+++.+.++..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHh
Confidence 579999999999999999999999999999988766777788877654
No 63
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.40 E-value=7.7e-07 Score=65.99 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=40.3
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~ 130 (174)
|+||+.++|+.|++|+++|+++|++|+.+|+...+...+++.+.++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 78999999999999999999999999999998765556666666554
No 64
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.40 E-value=1.8e-06 Score=57.34 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=57.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
+++|..+.||+|.+++-+|+++|++|+.++++.. .++...+.+.+......||.+..||..+.....+.++
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~--~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLP--LSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCC--cCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 4689999999999999999999999999988763 2223344566777888999999999888877766554
No 65
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.38 E-value=3.6e-06 Score=55.59 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=57.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+++|+.+.||+|.+++-+|...|++|+.+.++.. ..+...+.+.+......+|.+..+|..+.....+.++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLT--KGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCcc--ccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 6799999999999999999999999999888753 22233445667778889999999998888777776654
No 66
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.31 E-value=4.4e-06 Score=68.87 Aligned_cols=78 Identities=18% Similarity=0.461 Sum_probs=59.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH-----
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY----- 157 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~----- 157 (174)
++++|-..+||||-+++.+|+-+|++|.+|||+.+ .+..+ +++.++.||.+.+.|+.+....-+..+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV------~r~eI-k~SsykKVPil~~~Geqm~dSsvIIs~laTyLq 162 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV------LRQEI-KWSSYKKVPILLIRGEQMVDSSVIISLLATYLQ 162 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecch------hhhhc-cccccccccEEEeccceechhHHHHHHHHHHhc
Confidence 79999999999999999999999999999999864 23333 4567889999999998766655444332
Q ss_pred -hhCchHHHHH
Q 030613 158 -RKGELEPLLS 167 (174)
Q Consensus 158 -~~g~L~~~L~ 167 (174)
....|.++++
T Consensus 163 ~~~q~l~eiiq 173 (370)
T KOG3029|consen 163 DKRQDLGEIIQ 173 (370)
T ss_pred cCCCCHHHHHH
Confidence 3345555543
No 67
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.30 E-value=2.5e-06 Score=59.28 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=38.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHc----CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEEecc
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHIGGC 150 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~----~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~iGG~ 150 (174)
+++|+.+||+.|+.....+++. +-.+..+.+|.. ... + +....+..++|.+++ +|+.++-+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~---~-l~~~~~v~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQ---E-IAEAAGIMGTPTVQFFKDKELVKEI 83 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCH---H-HHHHCCCeeccEEEEEECCeEEEEE
Confidence 5678889999999999888762 222344444432 222 2 233348889997655 88766443
No 68
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.28 E-value=2.1e-06 Score=62.10 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=42.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
.|+||+.+.|+.|++|+++|+++|++|+++|+...+...+++.+.++..
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~ 49 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDL 49 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHc
Confidence 3789999999999999999999999999999987655667777776644
No 69
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.27 E-value=5.8e-06 Score=54.25 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHh
Q 030613 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYR 158 (174)
Q Consensus 90 ~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~ 158 (174)
+.||+|.+++.+|+.+|++|+.++++.. . .+....+|++..+|+.+.++..+.++.+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~---~---------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNP---W---------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCc---c---------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 3799999999999999999999988752 1 4456789999999999999988776543
No 70
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.26 E-value=5.6e-06 Score=58.01 Aligned_cols=67 Identities=16% Similarity=0.389 Sum_probs=39.6
Q ss_pred HHHHHhcCCC--EEEEEeCCChhHHHHHHHH-------HHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 74 SVKKTVSENP--VVVYSKTWCSYSSEVKLLF-------KRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 74 ~l~~~i~~~~--Vviy~~~~Cp~C~~ak~~L-------~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
.+.++++.++ ++.|+.+||++|++....+ +.++-.+..+.||.. .+.....+..++ .+..++|++++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~~~-~~i~~~Pti~~ 78 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWT-KNDPEITALLKR-FGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecC-CCCHHHHHHHHH-cCCCCCCEEEE
Confidence 4555555555 5568999999999887544 122223454555432 122333444444 48999996654
No 71
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.24 E-value=1.9e-06 Score=62.47 Aligned_cols=59 Identities=12% Similarity=0.319 Sum_probs=39.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCC----eEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECCeEEe
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEP----LVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGGKHIG 148 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~----~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G~~iG 148 (174)
|+-|+.+|||.|+.....|+++..+| ..+.||.+ +. ++ +....+..++|+++ -+|+.++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD--~~---~~-la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID--EV---PD-FNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC--CC---HH-HHHHcCCCCCCEEEEEECCEEEE
Confidence 55599999999999999997754332 23444432 12 33 34445899999664 4998774
No 72
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.24 E-value=3.9e-06 Score=56.13 Aligned_cols=54 Identities=31% Similarity=0.621 Sum_probs=36.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHH----cCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeE
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKR----LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKH 146 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~----~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~ 146 (174)
+|.+ ..++||+|..+.+++++ .+++++.+++. +.++ +.+ +|..++|.++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-------~~~~-~~~-ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE-------DFEE-IEK-YGVMSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT-------THHH-HHH-TT-SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-------CHHH-HHH-cCCCCCCEEEECCEE
Confidence 4667 45679999988776654 56656556552 2233 344 499999999999984
No 73
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.23 E-value=7.2e-06 Score=53.45 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=55.3
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
+++|+...|+.|.+++.+|..+|++|+.++++.. .+....+.+.+.+....+|++..+|..+.....+.++
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~--~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLL--KGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCc--cCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 3688888999999999999999999999888753 1222234456667888999999999888777666554
No 74
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.22 E-value=9.7e-06 Score=53.39 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=52.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhC-CCcccEEEECCeEEecchHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTG-QHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g-~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+.+|+.+.||+|.+++-+|+..|++|+.++++.. .....+.+... ...+|.+..+|..+.....+.++.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-----~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL 70 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-----NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYI 70 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-----cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence 4689999999999999999999999999887752 11223445544 478999999988887777666554
No 75
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.19 E-value=1.2e-05 Score=56.03 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=51.8
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHh
Q 030613 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYR 158 (174)
Q Consensus 90 ~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~ 158 (174)
..||||++++-.|.++|++|+.++++.. +. .+.+.++.-...+|++..+|..+...+.+.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~--~~---p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK--RK---PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC--CC---CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 4699999999999999999999999863 22 2446676677889999999999988887776643
No 76
>PHA02278 thioredoxin-like protein
Probab=98.15 E-value=1.7e-05 Score=56.37 Aligned_cols=70 Identities=13% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHHHhc-CCC-EEEEEeCCChhHHHHHHHHHHcC------CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECC
Q 030613 75 VKKTVS-ENP-VVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGG 144 (174)
Q Consensus 75 l~~~i~-~~~-Vviy~~~~Cp~C~~ak~~L~~~~------v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G 144 (174)
+++.+. ... |+-|+.+||+.|+.+...|++.. +++..+|+|.. ... .+.+.+..+..++|++. -||
T Consensus 7 ~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~---~~d-~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 7 LNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAE---DVD-REKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcc---ccc-cHHHHHHCCCccccEEEEEECC
Confidence 333333 334 44588899999999998887652 23445566642 111 22244555889999664 488
Q ss_pred eEEe
Q 030613 145 KHIG 148 (174)
Q Consensus 145 ~~iG 148 (174)
+.++
T Consensus 83 ~~v~ 86 (103)
T PHA02278 83 QLVK 86 (103)
T ss_pred EEEE
Confidence 8663
No 77
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.12 E-value=3.4e-06 Score=58.65 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=41.2
Q ss_pred HHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCC-----CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCe
Q 030613 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV-----EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGK 145 (174)
Q Consensus 75 l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v-----~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~ 145 (174)
++++++...++.|+.+||++|+.....+.+... .+....+|.. +. .. +.+..+..++|++++ +|+
T Consensus 11 f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--~~---~~-~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 11 WTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT--QE---PG-LSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred HHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc--CC---Hh-HHHHcCCcccCEEEEeCCCC
Confidence 444556667888999999999999888876432 2233333321 12 22 333348899998775 665
No 78
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.10 E-value=3.7e-06 Score=57.91 Aligned_cols=76 Identities=18% Similarity=0.370 Sum_probs=48.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHc----CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEEecchHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHIGGCTDTVKLY 157 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~----~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~iGG~del~~l~ 157 (174)
|+.|+.+||++|+..+..|.+. +-....+.||.. .. .+. .+..+...+|++++ +|+.+.-+... .
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~---~~l-~~~~~v~~~Pt~~~~~~g~~~~~~~g~---~ 91 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--EN---KEL-CKKYGVKSVPTIIFFKNGKEVKRYNGP---R 91 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TS---HHH-HHHTTCSSSSEEEEEETTEEEEEEESS---S
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhh--cc---chh-hhccCCCCCCEEEEEECCcEEEEEECC---C
Confidence 6668889999999999888763 324556666652 12 333 34448999997654 88766544321 1
Q ss_pred hhCchHHHHHh
Q 030613 158 RKGELEPLLSE 168 (174)
Q Consensus 158 ~~g~L~~~L~~ 168 (174)
...+|.++|++
T Consensus 92 ~~~~l~~~i~~ 102 (103)
T PF00085_consen 92 NAESLIEFIEK 102 (103)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHc
Confidence 33456666654
No 79
>PTZ00051 thioredoxin; Provisional
Probab=98.10 E-value=8.3e-06 Score=56.21 Aligned_cols=72 Identities=17% Similarity=0.405 Sum_probs=44.8
Q ss_pred HHHHHHhcCCC--EEEEEeCCChhHHHHHHHHHHcCCC---CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCe
Q 030613 73 ESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKRLGVE---PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGK 145 (174)
Q Consensus 73 ~~l~~~i~~~~--Vviy~~~~Cp~C~~ak~~L~~~~v~---~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~ 145 (174)
+.++++++.++ ++.|+.+||++|+.....|.+...+ ...+.+|.. +..+...+ .+...+|++.+ +|+
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~-----~~~~~~~~-~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD-----ELSEVAEK-ENITSMPTFKVFKNGS 82 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc-----chHHHHHH-CCCceeeEEEEEeCCe
Confidence 44555555555 5568899999999998888764222 334444431 12333444 48889996654 887
Q ss_pred EEecc
Q 030613 146 HIGGC 150 (174)
Q Consensus 146 ~iGG~ 150 (174)
.++.+
T Consensus 83 ~~~~~ 87 (98)
T PTZ00051 83 VVDTL 87 (98)
T ss_pred EEEEE
Confidence 66544
No 80
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.09 E-value=1.2e-05 Score=56.57 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=39.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC---CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEEec
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE---PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHIGG 149 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~---~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~iGG 149 (174)
|+-|+.+||+.|+.....|.++.-+ ...+.|+.+ +..+..+..++ .+...+|++++ +|+.++-
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d--~~~~~~~l~~~-~~V~~~Pt~~~~~~G~~v~~ 86 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGD--ENDSTMELCRR-EKIIEVPHFLFYKDGEKIHE 86 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECC--CChHHHHHHHH-cCCCcCCEEEEEeCCeEEEE
Confidence 5568999999999988888764222 234444432 22333444444 48999996554 8875543
No 81
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.07 E-value=1.5e-05 Score=57.76 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHHHHhcCC-C--EEEEEeCCChhHHHHHHHHH-------HcCCCCeEEEecccCCCcHH---------HHHHHHHHhC
Q 030613 73 ESVKKTVSEN-P--VVVYSKTWCSYSSEVKLLFK-------RLGVEPLVIELDEMGPQGPQ---------LQKLLERLTG 133 (174)
Q Consensus 73 ~~l~~~i~~~-~--Vviy~~~~Cp~C~~ak~~L~-------~~~v~~~~vdid~~~~~~~~---------~~~~l~~~~g 133 (174)
+.++++.+.+ + ++.|+.+||++|++....+. .+.-.+..+.|+.+ +... -...+....+
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d--~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINID--GDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEcc--CCceeeccCCCCccHHHHHHHcC
Confidence 3455555555 3 56689999999998876542 12223444444432 1100 1233445558
Q ss_pred CCcccEEEE
Q 030613 134 QHTVPNVFI 142 (174)
Q Consensus 134 ~~tvP~IfI 142 (174)
..++|++++
T Consensus 82 v~~~Pt~~~ 90 (125)
T cd02951 82 VRFTPTVIF 90 (125)
T ss_pred CccccEEEE
Confidence 899997544
No 82
>PRK10026 arsenate reductase; Provisional
Probab=98.06 E-value=3.1e-06 Score=63.53 Aligned_cols=50 Identities=24% Similarity=0.453 Sum_probs=43.9
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
..|+||+.+.|.-|++|+++|+++|++|+++|+-..+...++++..++..
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADM 51 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhC
Confidence 45899999999999999999999999999999987666777788877754
No 83
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.06 E-value=2.8e-05 Score=51.58 Aligned_cols=58 Identities=22% Similarity=0.509 Sum_probs=39.4
Q ss_pred EEEEEeCCChhHHHHHHHHHH-----cCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEEec
Q 030613 84 VVVYSKTWCSYSSEVKLLFKR-----LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHIGG 149 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~-----~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~iGG 149 (174)
+++|+.+||++|.++...+++ .++.+-.++++. . .+..+. .+...+|++++ +|+.++-
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~----~---~~~~~~-~~v~~~P~~~~~~~g~~~~~ 78 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE----N---PELAEE-YGVRSIPTFLFFKNGKEVDR 78 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC----C---hhHHHh-cCcccccEEEEEECCEEEEE
Confidence 777899999999999999987 344444455543 1 222333 37888998766 8874433
No 84
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.8e-05 Score=52.86 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=49.2
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHH-----------HhCCCcccEEEE-CCeEEecchH
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER-----------LTGQHTVPNVFI-GGKHIGGCTD 152 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~-----------~~g~~tvP~IfI-~G~~iGG~de 152 (174)
++|+...||.|..++++|++.+++|++|||... ...+++.+.- ..|+-.+|.+.+ ||+.|-| +|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~S---m~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~D 80 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITES---MANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DD 80 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhh---hhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-ch
Confidence 789999999999999999999999999999752 3344333321 236778998887 5566665 44
Q ss_pred HH
Q 030613 153 TV 154 (174)
Q Consensus 153 l~ 154 (174)
+.
T Consensus 81 l~ 82 (85)
T COG4545 81 LS 82 (85)
T ss_pred hh
Confidence 44
No 85
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.04 E-value=1.2e-05 Score=57.92 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=38.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC---CeEEEecccCCCcHHHHHHHHHHhCCCcccEE--EECCeEEecc
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE---PLVIELDEMGPQGPQLQKLLERLTGQHTVPNV--FIGGKHIGGC 150 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~---~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I--fI~G~~iGG~ 150 (174)
|+.|+.+||+.|+.+...|+++.-+ ...+.||.. +..+. .+..+...+|++ |-+|+.++-.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~-----~~~~l-~~~~~v~~vPt~l~fk~G~~v~~~ 91 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE-----KAPFL-VEKLNIKVLPTVILFKNGKTVDRI 91 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc-----cCHHH-HHHCCCccCCEEEEEECCEEEEEE
Confidence 5557889999999999888774322 244455432 11233 343488899965 4499866443
No 86
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.04 E-value=1.9e-05 Score=51.76 Aligned_cols=68 Identities=10% Similarity=0.183 Sum_probs=52.0
Q ss_pred EEEEEeCCChhHHHHHHHHHH--cCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE-CCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKR--LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI-GGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~--~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI-~G~~iGG~del~~l 156 (174)
+.+|+.+.||+|.+++-+|.. .+++|+.+.++.. ... +.+.+.....++|.+.. ||..+.....+.++
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~----~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDD----ESLLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCC----hHHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 368999999999999999999 8899999988742 112 23445567888999975 77788777666554
No 87
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.04 E-value=5.8e-05 Score=49.78 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=56.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
++++|..+.|+.|.+++-+|.+.|++|+.+.++. .+..+.+...+...++|++..||..+.+...+.++.
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~-----~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTY-----EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH-----HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 3678988899999999999999999999998864 122334556666788999999999888887776654
No 88
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.03 E-value=4.4e-05 Score=50.44 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=55.3
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+++|+.+.+++|++++-+|+..|++|+.+.++.. +.+...+.+.+......+|.+..+|..+.....+.++.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~--~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl 72 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLR--KGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYL 72 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCC--CCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 3689999999999999999999999999888753 22222334556667889999998888777766665554
No 89
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.02 E-value=3.4e-05 Score=51.11 Aligned_cols=63 Identities=10% Similarity=0.154 Sum_probs=51.1
Q ss_pred EEEEEeC-------CChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 84 VVVYSKT-------WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~-------~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
+++|..+ .||+|.+++.+|+..|++|+.++++. ........+|++..+|+.+.+...+.++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~------------~~~~p~g~vPvl~~~g~~l~eS~~I~~y 69 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL------------AKRSPKGKLPFIELNGEKIADSELIIDH 69 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc------------ccCCCCCCCCEEEECCEEEcCHHHHHHH
Confidence 5678776 57999999999999999999887763 1344678899999999999888877665
Q ss_pred Hh
Q 030613 157 YR 158 (174)
Q Consensus 157 ~~ 158 (174)
.+
T Consensus 70 L~ 71 (75)
T cd03080 70 LE 71 (75)
T ss_pred HH
Confidence 43
No 90
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.02 E-value=1.2e-05 Score=55.29 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=38.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCC----CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEEe
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGV----EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHIG 148 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v----~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~iG 148 (174)
++.|+.+||++|+.....|.+..- .+..+.||.. .. .+ +.+..+..++|++++ +|+.+.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~---~~-l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD--AQ---PQ-IAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc--CC---HH-HHHHcCCCCCCEEEEEeCCEEee
Confidence 666888999999999888876432 2344555542 12 23 333448899997654 887653
No 91
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.01 E-value=2e-05 Score=53.29 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=50.7
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEEC-CeEEecchHHHHHHh
Q 030613 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG-GKHIGGCTDTVKLYR 158 (174)
Q Consensus 90 ~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~-G~~iGG~del~~l~~ 158 (174)
++||+|.+++-+|..+|++|+.++++.. +.....+.+ .......+|++..+ |+.+.+...+.++.+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~--~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFP--DIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCC--Ccccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 6799999999999999999999888752 222323333 45567899999888 888888877776643
No 92
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.01 E-value=2.4e-05 Score=58.51 Aligned_cols=60 Identities=18% Similarity=0.382 Sum_probs=36.6
Q ss_pred EEEEEeCCChhHHHHHHHHHHc----CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEE-E--CCeEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF-I--GGKHI 147 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~----~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If-I--~G~~i 147 (174)
|+.|+.+||++|+.....|.++ +-.+.++.|+.+ .....+.+.+ .+...+|+++ + +|+.+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd---~~~~~~~~~~-~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVD---NPKWLPEIDR-YRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcC---CcccHHHHHH-cCCCCCCEEEEECCCCCEE
Confidence 5568889999999988888753 222334434331 1222343444 4899999665 4 57655
No 93
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.99 E-value=2.8e-05 Score=55.59 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=43.6
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCC---eEEEecccCCCcHHHHHHHHHHhCCCcccEE--EECCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEP---LVIELDEMGPQGPQLQKLLERLTGQHTVPNV--FIGGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~---~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I--fI~G~~iGG~del~~l 156 (174)
|+.|+.+||+.|+.+...|+++.-+| ..+.||.. +. .+.+..+..++|++ |-+|+.++.+.....+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~-----~~--~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAE-----KA--FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEch-----hh--HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence 45688899999999998888754333 34455542 11 34454588999965 4599887665544443
No 94
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.99 E-value=5.9e-05 Score=50.47 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=54.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEEC---CeEEecchHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG---GKHIGGCTDTVKLY 157 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~---G~~iGG~del~~l~ 157 (174)
+++|+.+. |+|.+++-+|+.+|++|+.+.++.. .+....+.+.+......+|.+..+ |..+.....+.++.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~--~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL 75 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDIS--KGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYL 75 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCc--CCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHH
Confidence 67899885 9999999999999999999888742 122333445566678899999887 77887777666554
No 95
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.98 E-value=2.2e-05 Score=51.55 Aligned_cols=68 Identities=15% Similarity=0.263 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE-CCeEEecchHHHHHHhh
Q 030613 91 WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI-GGKHIGGCTDTVKLYRK 159 (174)
Q Consensus 91 ~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI-~G~~iGG~del~~l~~~ 159 (174)
.||||+++.-+|..+|++|+...+... ..+....+.+.++++..+||.+.. +|+.+.....+.++.++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~-~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLI-PKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETT-TTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeee-cCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 499999999999999999998777432 122222344677788899999998 89999988888776543
No 96
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.96 E-value=1.2e-05 Score=63.88 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=45.8
Q ss_pred hHHHHHHHH-----hcCCCEEEEEe---CCChhHHHHHHHHHHcCCCC-----eEEEecccCCCcHHHHHHHHHHhCCCc
Q 030613 70 RLEESVKKT-----VSENPVVVYSK---TWCSYSSEVKLLFKRLGVEP-----LVIELDEMGPQGPQLQKLLERLTGQHT 136 (174)
Q Consensus 70 ~~~~~l~~~-----i~~~~Vviy~~---~~Cp~C~~ak~~L~~~~v~~-----~~vdid~~~~~~~~~~~~l~~~~g~~t 136 (174)
+.++.+++. .+...|++|+. +|||+|+.+..+|++..-.| ..+++|.. +..+ +.+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~-----~~~~-l~~~~~V~~ 77 (215)
T TIGR02187 4 EDREILKELFLKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP-----EDKE-EAEKYGVER 77 (215)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc-----ccHH-HHHHcCCCc
Confidence 344444444 33445888988 99999999999998764333 34555531 2233 334448999
Q ss_pred ccEEEE--CCeEE
Q 030613 137 VPNVFI--GGKHI 147 (174)
Q Consensus 137 vP~IfI--~G~~i 147 (174)
+|++.+ ||+.+
T Consensus 78 ~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 78 VPTTIILEEGKDG 90 (215)
T ss_pred cCEEEEEeCCeee
Confidence 997766 65544
No 97
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.2e-05 Score=59.20 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=38.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCC----eEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECCeEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEP----LVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGGKHI 147 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~----~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G~~i 147 (174)
+|.|+.+||..|+.....|+++--+| ..+.||.+ +. .+ +...++...+|+|+ .||+.+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD--~~---~e-la~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTD--EH---PE-LAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccc--cc---cc-hHhhcceeeeeEEEEEECCEEe
Confidence 55699999999999999998865443 33333321 11 22 34445899999664 599765
No 98
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.95 E-value=3.1e-05 Score=54.36 Aligned_cols=67 Identities=21% Similarity=0.316 Sum_probs=40.0
Q ss_pred HHHHHhcCCC--EEEEEeCCChhHHHHHHHHHHcCCC-----CeEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECC
Q 030613 74 SVKKTVSENP--VVVYSKTWCSYSSEVKLLFKRLGVE-----PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGG 144 (174)
Q Consensus 74 ~l~~~i~~~~--Vviy~~~~Cp~C~~ak~~L~~~~v~-----~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G 144 (174)
.+.++++..+ |+.|+.+||++|+.....|.+..-+ .....++. +. .+..++ .+...+|+++ -+|
T Consensus 9 ~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~---d~---~~~~~~-~~v~~~Pt~~~~~~g 81 (102)
T cd02948 9 EWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEA---DT---IDTLKR-YRGKCEPTFLFYKNG 81 (102)
T ss_pred HHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeC---CC---HHHHHH-cCCCcCcEEEEEECC
Confidence 3444444444 5568999999999998888664222 23344443 11 233334 4889999554 488
Q ss_pred eEE
Q 030613 145 KHI 147 (174)
Q Consensus 145 ~~i 147 (174)
+.+
T Consensus 82 ~~~ 84 (102)
T cd02948 82 ELV 84 (102)
T ss_pred EEE
Confidence 744
No 99
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.3e-05 Score=66.57 Aligned_cols=75 Identities=23% Similarity=0.446 Sum_probs=50.4
Q ss_pred hHHHHHHHHhcCCCE-EEEEeCCChhHHHHHHHHHHcCCCC----e--EEEecccCCCcHHHHHHHHHHhCCCcccEE--
Q 030613 70 RLEESVKKTVSENPV-VVYSKTWCSYSSEVKLLFKRLGVEP----L--VIELDEMGPQGPQLQKLLERLTGQHTVPNV-- 140 (174)
Q Consensus 70 ~~~~~l~~~i~~~~V-viy~~~~Cp~C~~ak~~L~~~~v~~----~--~vdid~~~~~~~~~~~~l~~~~g~~tvP~I-- 140 (174)
..++.|.+.-...+| |.|+.|||+.|+.....|...-.+| . .+|+|.. +. +....|..++|+|
T Consensus 32 nfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-------p~-vAaqfgiqsIPtV~a 103 (304)
T COG3118 32 NFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-------PM-VAAQFGVQSIPTVYA 103 (304)
T ss_pred HHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-------hh-HHHHhCcCcCCeEEE
Confidence 334444454455454 5588899999999999998764443 3 4455542 22 3444499999966
Q ss_pred EECCeEEecchH
Q 030613 141 FIGGKHIGGCTD 152 (174)
Q Consensus 141 fI~G~~iGG~de 152 (174)
|++|+.|-||--
T Consensus 104 f~dGqpVdgF~G 115 (304)
T COG3118 104 FKDGQPVDGFQG 115 (304)
T ss_pred eeCCcCccccCC
Confidence 579999988853
No 100
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.92 E-value=8e-05 Score=48.67 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=54.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
+++|..+.|+.|.+++-+|...|++|+.+.++.. + .....+........+|.+..+|..+.....+.++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~--~--~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYE--E--WPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHH--H--hhhhhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence 3688889999999999999999999999988752 1 1112245566788899999999888877766654
No 101
>PRK10996 thioredoxin 2; Provisional
Probab=97.91 E-value=5.6e-05 Score=56.24 Aligned_cols=86 Identities=14% Similarity=0.342 Sum_probs=49.8
Q ss_pred HHHHHhcCCC--EEEEEeCCChhHHHHHHHHHHc----CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCe
Q 030613 74 SVKKTVSENP--VVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGK 145 (174)
Q Consensus 74 ~l~~~i~~~~--Vviy~~~~Cp~C~~ak~~L~~~----~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~ 145 (174)
.++++++..+ ++.|+.+||++|+.....|.+. +-.+..+.+|.. +. .+ +.+..+..++|++++ +|+
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~---~~-l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE--AE---RE-LSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC--CC---HH-HHHhcCCCccCEEEEEECCE
Confidence 3444444433 6668999999999987777663 323445555542 22 23 333348899996654 888
Q ss_pred EEecchHHHHHHhhCchHHHHHh
Q 030613 146 HIGGCTDTVKLYRKGELEPLLSE 168 (174)
Q Consensus 146 ~iGG~del~~l~~~g~L~~~L~~ 168 (174)
.+.-+.. ......|.++|++
T Consensus 118 ~v~~~~G---~~~~e~l~~~l~~ 137 (139)
T PRK10996 118 VVDMLNG---AVPKAPFDSWLNE 137 (139)
T ss_pred EEEEEcC---CCCHHHHHHHHHH
Confidence 6533211 1133456666654
No 102
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.91 E-value=3.6e-05 Score=56.03 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=43.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
.|+||+.+.|.-|++|+++|+++|++|+++++...+...+++.+.++..
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~ 50 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKL 50 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHc
Confidence 3899999999999999999999999999999987766777777777665
No 103
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.91 E-value=3e-05 Score=53.18 Aligned_cols=58 Identities=17% Similarity=0.397 Sum_probs=37.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHcC----CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEE--EECCeEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLG----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV--FIGGKHI 147 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~----v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I--fI~G~~i 147 (174)
++.|+.+||+.|+++...|++.. ..+..+.+|.. +..+ +.+..+...+|++ |.+|+.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~-----~~~~-~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE-----ELPE-ISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc-----cCHH-HHHhcCCccccEEEEEECCEEE
Confidence 56789999999999988887643 23455555542 1233 3333488899955 4488754
No 104
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.91 E-value=6.7e-06 Score=59.20 Aligned_cols=48 Identities=29% Similarity=0.592 Sum_probs=41.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
|+||+.+.|.-|++|+++|++.+++|+++|+-+.+....++.+.++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~ 48 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKL 48 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHc
Confidence 579999999999999999999999999999987655666777766554
No 105
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.89 E-value=2.5e-05 Score=53.71 Aligned_cols=53 Identities=17% Similarity=0.387 Sum_probs=33.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC------CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE------PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~------~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
+++|+.+||+.|++....|.+.... +....+|.. +..+ +.+..+...+|.+++
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~~-~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT-----AEKD-LASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc-----chHH-HHHhCCCCcCCEEEE
Confidence 7789999999999887777653221 333444431 1233 334458899998754
No 106
>PRK09381 trxA thioredoxin; Provisional
Probab=97.88 E-value=3.6e-05 Score=54.22 Aligned_cols=77 Identities=18% Similarity=0.352 Sum_probs=45.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHHc----CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEEecchHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHIGGCTDTVKL 156 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~----~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~iGG~del~~l 156 (174)
-++.|+.+|||+|+.....|++. +-.+....+|.. ... . +.+..+..++|++++ +|+.++.+....
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~--~~~---~-~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~-- 95 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID--QNP---G-TAPKYGIRGIPTLLLFKNGEVAATKVGAL-- 95 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECC--CCh---h-HHHhCCCCcCCEEEEEeCCeEEEEecCCC--
Confidence 36668899999999998877653 222344444432 122 2 233348999997755 888775442211
Q ss_pred HhhCchHHHHHh
Q 030613 157 YRKGELEPLLSE 168 (174)
Q Consensus 157 ~~~g~L~~~L~~ 168 (174)
...+|.++|++
T Consensus 96 -~~~~l~~~i~~ 106 (109)
T PRK09381 96 -SKGQLKEFLDA 106 (109)
T ss_pred -CHHHHHHHHHH
Confidence 23446666654
No 107
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.88 E-value=4.6e-05 Score=55.17 Aligned_cols=72 Identities=17% Similarity=0.393 Sum_probs=44.0
Q ss_pred hHHHHHHHHhcCCC--EEEEEeCCChhHHHHHHHHHHc------CCCCeEEEecccCCCcHHHHHHHHHHhCCC--cccE
Q 030613 70 RLEESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQH--TVPN 139 (174)
Q Consensus 70 ~~~~~l~~~i~~~~--Vviy~~~~Cp~C~~ak~~L~~~------~v~~~~vdid~~~~~~~~~~~~l~~~~g~~--tvP~ 139 (174)
+.++.++.+...++ ++.|+.+||++|+.....+.+. ...|..++++.. .....+ .+ +.. .+|+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~---~~~~~~---~~-~~~g~~vPt 79 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD---EEPKDE---EF-SPDGGYIPR 79 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC---CCchhh---hc-ccCCCccce
Confidence 35667777766555 4558899999999998877662 334566677653 212222 22 333 3896
Q ss_pred EEE---CCeEEe
Q 030613 140 VFI---GGKHIG 148 (174)
Q Consensus 140 IfI---~G~~iG 148 (174)
+++ +|+.++
T Consensus 80 ~~f~~~~Gk~~~ 91 (117)
T cd02959 80 ILFLDPSGDVHP 91 (117)
T ss_pred EEEECCCCCCch
Confidence 654 666554
No 108
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.86 E-value=0.00015 Score=53.17 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=46.8
Q ss_pred HHHHHHhcCCC-EE-EEEeCCChhHHHHHH-HHHH------cCCCCeEEEecccCCCcHHHHH----HHHHHhCCCcccE
Q 030613 73 ESVKKTVSENP-VV-VYSKTWCSYSSEVKL-LFKR------LGVEPLVIELDEMGPQGPQLQK----LLERLTGQHTVPN 139 (174)
Q Consensus 73 ~~l~~~i~~~~-Vv-iy~~~~Cp~C~~ak~-~L~~------~~v~~~~vdid~~~~~~~~~~~----~l~~~~g~~tvP~ 139 (174)
+.++++.+.++ |+ .|+.+||++|+...+ .+.. +.-.|..+.+|.. ..+++.+ ..+.+.|...+|.
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~--~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDRE--ERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCC--cCcHHHHHHHHHHHHhcCCCCCCE
Confidence 34566666655 44 478899999998854 3332 3445777777653 2333332 2333458889997
Q ss_pred EEE---CCeEEecc
Q 030613 140 VFI---GGKHIGGC 150 (174)
Q Consensus 140 IfI---~G~~iGG~ 150 (174)
+.+ +|+.+.++
T Consensus 84 ~vfl~~~G~~~~~~ 97 (124)
T cd02955 84 NVFLTPDLKPFFGG 97 (124)
T ss_pred EEEECCCCCEEeee
Confidence 665 78888443
No 109
>PRK10853 putative reductase; Provisional
Probab=97.86 E-value=3.8e-05 Score=55.95 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=41.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
|+||+.+.|.-|++|+++|+++|++|+++|+-+.+...+++.+.+.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDEL 49 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHc
Confidence 789999999999999999999999999999987655667777777654
No 110
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.86 E-value=5e-05 Score=55.98 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=41.1
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~ 130 (174)
.|+||+.+.|.-|++|+++|+++|++|+++|+.+.+...+++++.++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence 378999999999999999999999999999998765566667666655
No 111
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.85 E-value=4e-05 Score=55.36 Aligned_cols=48 Identities=27% Similarity=0.515 Sum_probs=41.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
|++|+.+.|+-|++|+++|++.+++|+++|+.+.+...+++.+.++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKL 48 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHc
Confidence 579999999999999999999999999999987666677777777654
No 112
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.85 E-value=1.2e-05 Score=57.34 Aligned_cols=59 Identities=19% Similarity=0.389 Sum_probs=35.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCC-----CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECCeEEe
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGV-----EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGGKHIG 148 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v-----~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G~~iG 148 (174)
++.|+.+||+.|+.....+.+..- ......||.. .. ++ +....|..++|+++ .+|+.++
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--~~---~~-l~~~~~V~~~Pt~~i~~~g~~~~ 93 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--HE---RR-LARKLGAHSVPAIVGIINGQVTF 93 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--cc---HH-HHHHcCCccCCEEEEEECCEEEE
Confidence 566899999999988777654321 2333334331 11 22 33334899999665 5887653
No 113
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.84 E-value=4.8e-05 Score=59.00 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=48.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC---CeEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECCeEEe---cchHHH-
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE---PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGGKHIG---GCTDTV- 154 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~---~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G~~iG---G~del~- 154 (174)
|+-|+.+||+.|+.+...|.++.-+ ..++.|+.. +. + +....+...+|+++ .+|+.++ |++++.
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d-----~~-~-l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g 159 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS-----AT-G-ASDEFDTDALPALLVYKGGELIGNFVRVTEDLG 159 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc-----ch-h-hHHhCCCCCCCEEEEEECCEEEEEEechHHhcC
Confidence 4448889999999888888765433 345555542 11 3 44445889999654 5998775 444322
Q ss_pred HHHhhCchHHHHHhcc
Q 030613 155 KLYRKGELEPLLSEAK 170 (174)
Q Consensus 155 ~l~~~g~L~~~L~~~g 170 (174)
.-.....|+.+|.+.|
T Consensus 160 ~~f~~~~le~~L~~~g 175 (175)
T cd02987 160 EDFDAEDLESFLVEYG 175 (175)
T ss_pred CCCCHHHHHHHHHhcC
Confidence 1223456677776654
No 114
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=2.9e-05 Score=54.41 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCEEEEEeCCChhH------HHHHHHHHHcCCCCeEEEecccCCCc----HHHHHHHHHHhCCCcccEEEECCeEEecch
Q 030613 82 NPVVVYSKTWCSYS------SEVKLLFKRLGVEPLVIELDEMGPQG----PQLQKLLERLTGQHTVPNVFIGGKHIGGCT 151 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C------~~ak~~L~~~~v~~~~vdid~~~~~~----~~~~~~l~~~~g~~tvP~IfI~G~~iGG~d 151 (174)
..|.+|+++.-+.- .++..+|+...+.++.+||....... ..+++..+-..|.+.-||||-++++.|+|+
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence 34677777544433 36778888889999999987642111 112333444578888999999999999999
Q ss_pred HHHHHHhhCchHHHHH
Q 030613 152 DTVKLYRKGELEPLLS 167 (174)
Q Consensus 152 el~~l~~~g~L~~~L~ 167 (174)
.+.+..+++.|.++|+
T Consensus 82 ~F~ea~E~ntl~eFL~ 97 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLG 97 (108)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999999985
No 115
>PRK10387 glutaredoxin 2; Provisional
Probab=97.79 E-value=0.0001 Score=57.59 Aligned_cols=70 Identities=19% Similarity=0.314 Sum_probs=54.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEE-EECCeEEecchHHHHHHhh
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV-FIGGKHIGGCTDTVKLYRK 159 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I-fI~G~~iGG~del~~l~~~ 159 (174)
+++|+.+.||+|.+++-+|+.+|++|+.++++.. + .... ....+..+||++ ..+|..+.....+.++.++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~--~--~~~~--~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLAND--D--EATP--IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCC--c--hhhH--HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 4689999999999999999999999999888642 1 1111 245567899999 5688888888887776644
No 116
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.79 E-value=6.5e-05 Score=45.48 Aligned_cols=56 Identities=27% Similarity=0.593 Sum_probs=39.1
Q ss_pred EEEEEeCCChhHHHHHHHHHH-----cCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECC
Q 030613 84 VVVYSKTWCSYSSEVKLLFKR-----LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~-----~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
+++|...+|++|.++...+.+ .++.+..++++.. ....+.. ...+...+|.+++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED----PALEKEL-KRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC----hHHhhHH-HhCCCccccEEEEEe
Confidence 478899999999999999994 4555666666652 2222222 334788999888765
No 117
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.78 E-value=4.9e-05 Score=55.02 Aligned_cols=69 Identities=13% Similarity=0.291 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCCEE-EEEeCCChhHHHHHHHHHHcCCCCe----EEEecccCCCcHHHHHHHHHHhCCCcccE--EEECC
Q 030613 72 EESVKKTVSENPVV-VYSKTWCSYSSEVKLLFKRLGVEPL----VIELDEMGPQGPQLQKLLERLTGQHTVPN--VFIGG 144 (174)
Q Consensus 72 ~~~l~~~i~~~~Vv-iy~~~~Cp~C~~ak~~L~~~~v~~~----~vdid~~~~~~~~~~~~l~~~~g~~tvP~--IfI~G 144 (174)
.+.+.+. ....|| =|+.+|||.|+..-.+|.++..+|. .+.||. ++.++ +.+..+....|+ +|-+|
T Consensus 6 d~~i~~~-~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDV-----Dev~d-va~~y~I~amPtfvffkng 78 (114)
T cd02986 6 DQAIKST-AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDV-----DKVPV-YTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHhc-CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEec-----cccHH-HHHhcCceeCcEEEEEECC
Confidence 3444443 233333 4999999999999999988754432 333333 13344 334447777884 45589
Q ss_pred eEE
Q 030613 145 KHI 147 (174)
Q Consensus 145 ~~i 147 (174)
+|+
T Consensus 79 kh~ 81 (114)
T cd02986 79 QHM 81 (114)
T ss_pred cEE
Confidence 887
No 118
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.77 E-value=0.00011 Score=58.02 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=53.9
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEE-ECCeEEecchHHHHHHhh
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF-IGGKHIGGCTDTVKLYRK 159 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If-I~G~~iGG~del~~l~~~ 159 (174)
++|....||+|.+++-+|..+|++|+.++++.. +. ... .+..+..++|++. .||..+.+...+.++..+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~--~~---~~~-~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLND--DE---ETP-IRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCC--cc---hhH-HHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 368889999999999999999999998877542 11 122 3555678999997 788899998888776544
No 119
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=5.7e-05 Score=54.00 Aligned_cols=57 Identities=19% Similarity=0.461 Sum_probs=39.8
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCe---EEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECCeEE
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPL---VIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGGKHI 147 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~---~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G~~i 147 (174)
+-|+.+||+.|+.+...+.++..+|. ++.||.+ + .++..+++ +...+|++. .+|+.+
T Consensus 26 vdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvd----e-~~~~~~~~-~V~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 26 VDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVD----E-LEEVAKEF-NVKAMPTFVFYKGGEEV 87 (106)
T ss_pred EEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecc----c-CHhHHHhc-CceEeeEEEEEECCEEE
Confidence 33888999999999999998876664 4445442 1 45555554 889999654 477644
No 120
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.77 E-value=2.9e-05 Score=53.06 Aligned_cols=61 Identities=15% Similarity=0.389 Sum_probs=38.3
Q ss_pred CEEEEEeCCChhHHHHHHHHHHc----CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEEec
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHIGG 149 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~----~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~iGG 149 (174)
-++.|+.+||++|+.....|++. +-....+.+|.. .. .+ +.+..+...+|++++ +|+.+..
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~--~~---~~-~~~~~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD--EN---PD-IAAKYGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC--CC---HH-HHHHcCCCcCCEEEEEeCCcEeee
Confidence 36668889999999998777653 222444444432 12 22 233348999998766 7765543
No 121
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.76 E-value=1.8e-05 Score=58.55 Aligned_cols=79 Identities=20% Similarity=0.399 Sum_probs=41.5
Q ss_pred CchhHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHc-----CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEE
Q 030613 67 YGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (174)
Q Consensus 67 ~~~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~-----~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If 141 (174)
..++..+.++...+...+++++.+|||+|.+...+|.+. +++..++-.|. ..++.+.... .|.+.+|+++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~----~~el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDE----NKELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHH----HHHHTTTTTT--SS--SSEEE
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecC----ChhHHHHHHh-CCCeecCEEE
Confidence 445667788888888889999999999999988888764 34344443332 2222222222 5788999776
Q ss_pred E---CCeEEecc
Q 030613 142 I---GGKHIGGC 150 (174)
Q Consensus 142 I---~G~~iGG~ 150 (174)
+ +|+.+|-+
T Consensus 103 ~~d~~~~~lg~w 114 (129)
T PF14595_consen 103 FLDKDGKELGRW 114 (129)
T ss_dssp EE-TT--EEEEE
T ss_pred EEcCCCCEeEEE
Confidence 5 45655544
No 122
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.75 E-value=0.00024 Score=46.52 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=53.4
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
.+|+.+.+|+|.+++-+|+++|++|+.++++.. .++...+.+.+......+|.+..+|..+.....+.++
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~--~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQ--FGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccc--cccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 689999999999999999999999999888742 1222334455666788999999898877666555443
No 123
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.73 E-value=0.00014 Score=51.23 Aligned_cols=64 Identities=13% Similarity=0.300 Sum_probs=38.4
Q ss_pred HHHhcCCC--EEEEEeCCChhHHHHHHHHHHcCC----------CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE-
Q 030613 76 KKTVSENP--VVVYSKTWCSYSSEVKLLFKRLGV----------EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI- 142 (174)
Q Consensus 76 ~~~i~~~~--Vviy~~~~Cp~C~~ak~~L~~~~v----------~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI- 142 (174)
.+.++..+ ++.|+.+||++|++....+++..- ......||.. .. .+ +.+..|..++|++++
T Consensus 12 ~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d--~~---~~-l~~~~~v~~~Ptl~~~ 85 (108)
T cd02996 12 DDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD--KE---SD-IADRYRINKYPTLKLF 85 (108)
T ss_pred HHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC--CC---HH-HHHhCCCCcCCEEEEE
Confidence 34444444 567899999999999888864311 1233344431 11 23 334448999997754
Q ss_pred -CCe
Q 030613 143 -GGK 145 (174)
Q Consensus 143 -~G~ 145 (174)
+|+
T Consensus 86 ~~g~ 89 (108)
T cd02996 86 RNGM 89 (108)
T ss_pred eCCc
Confidence 665
No 124
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.72 E-value=0.00016 Score=47.75 Aligned_cols=69 Identities=10% Similarity=0.005 Sum_probs=52.9
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEEC-CeEEecchHHHHH
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG-GKHIGGCTDTVKL 156 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~-G~~iGG~del~~l 156 (174)
++|+.+.||+|.+++-+|+.+|++|+.++++.. .. ...+.+.+.....++|++..+ |..+.....+.++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~--~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~y 71 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPG--KE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYY 71 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccc--cc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHH
Confidence 478889999999999999999999999988853 11 223445666788899999984 7777666555544
No 125
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.71 E-value=0.00025 Score=46.86 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=52.4
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEEC-CeEEecchHHHHHH
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIG-GKHIGGCTDTVKLY 157 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~-G~~iGG~del~~l~ 157 (174)
.+|+.+.| .|.+++-+|.+.|++|+.++++.. +.+...+.+.+......+|.+..+ |..+.....+.++.
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLR--TKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecc--cCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHH
Confidence 57888876 488999999999999999888763 222334455667788899999887 77777776666553
No 126
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.69 E-value=0.00018 Score=56.62 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=55.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
.+++|+.+.||+|.+++-+|.++|++|+.+.|+.. + ..+.+.+......||++..||..+-...-+.++.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~--~---~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD--N---LPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc--c---CCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 47899999999999999999999999999988752 1 2234555667788999999998877766666544
No 127
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.66 E-value=3.4e-05 Score=54.07 Aligned_cols=64 Identities=19% Similarity=0.355 Sum_probs=36.7
Q ss_pred HHHHHHhcCCC-EEEEEeCCChhHHHHHHHHHHcCC-------CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 73 ESVKKTVSENP-VVVYSKTWCSYSSEVKLLFKRLGV-------EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 73 ~~l~~~i~~~~-Vviy~~~~Cp~C~~ak~~L~~~~v-------~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
+.+.+..+... ++.|+.+|||+|++....|++... .+....++.. .. .+ +.+..+..++|++++
T Consensus 7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~--~~---~~-~~~~~~I~~~Pt~~l 78 (104)
T cd03000 7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT--AY---SS-IASEFGVRGYPTIKL 78 (104)
T ss_pred hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc--cC---Hh-HHhhcCCccccEEEE
Confidence 44444444444 555888999999988777765322 2333333321 11 22 334458899997644
No 128
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.65 E-value=0.00022 Score=50.19 Aligned_cols=69 Identities=23% Similarity=0.385 Sum_probs=37.5
Q ss_pred CCEEEEEeCCChhHHHHHHHHHH---c----CCCCeEEEecccCCCcHH----------------HHHHHHHHhCCCccc
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKR---L----GVEPLVIELDEMGPQGPQ----------------LQKLLERLTGQHTVP 138 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~---~----~v~~~~vdid~~~~~~~~----------------~~~~l~~~~g~~tvP 138 (174)
..|++|+.+|||+|++..+.+.. . ...+..+.++.. +... ..+.+.+..|...+|
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtP 84 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID--DSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTP 84 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH--SHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSS
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC--CcccccccccccccchhhhHHHHHHHHHcCCCccC
Confidence 34788999999999998666653 1 113445544432 1111 123355555999999
Q ss_pred EEEE-C--Ce---EEecchH
Q 030613 139 NVFI-G--GK---HIGGCTD 152 (174)
Q Consensus 139 ~IfI-~--G~---~iGG~de 152 (174)
++++ | |+ .+.|+-.
T Consensus 85 t~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp EEEECTTTSCEEEEEESS--
T ss_pred EEEEEcCCCCEEEEecCCCC
Confidence 7776 4 66 4566643
No 129
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.63 E-value=0.00011 Score=51.11 Aligned_cols=58 Identities=16% Similarity=0.297 Sum_probs=36.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC----CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE----PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHI 147 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~----~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~i 147 (174)
++.|+.+||++|+.....+.+..-. .....||-+ +. .+ +.+..+...+|++++ +|+.+
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~--~~---~~-~~~~~~v~~~Pt~~~~~~g~~~ 85 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG--DD---RM-LCRSQGVNSYPSLYVFPSGMNP 85 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC--cc---HH-HHHHcCCCccCEEEEEcCCCCc
Confidence 6668999999999998888764332 233334331 11 23 333348889997744 77644
No 130
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.63 E-value=6.6e-05 Score=52.70 Aligned_cols=54 Identities=19% Similarity=0.412 Sum_probs=34.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC---CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE---PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~---~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
++.|+.+||++|+.....|+++.-. ...+.||.. .+..+ +.+..+...+|++++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~----~~~~~-l~~~~~V~~~PT~~l 78 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES----SIKPS-LLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC----CCCHH-HHHhcCCeecCEEEE
Confidence 5568999999999998888775332 233445431 01123 344458999997654
No 131
>PRK15113 glutathione S-transferase; Provisional
Probab=97.61 E-value=0.0004 Score=54.81 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=56.5
Q ss_pred CCEEEEEeC--CChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 82 NPVVVYSKT--WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 82 ~~Vviy~~~--~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
..+++|+.+ .||+|.+++-+|.++|++|+.+.++.. .++...+.+.+..-...||++..||..+-...-+.++.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~--~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLD--AGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCC--CccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 447899975 699999999999999999999988863 23333345556667788999999998776666555543
No 132
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.61 E-value=0.00014 Score=49.15 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=40.2
Q ss_pred HHHHHhcCC--CEEEEEeCCChhHHHHHHHHHHc------CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 74 SVKKTVSEN--PVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 74 ~l~~~i~~~--~Vviy~~~~Cp~C~~ak~~L~~~------~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
.+.+.+... -+++|+.+||++|+++...+.+. +-.+..+.++.. . ...+.+..+...+|++++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~----~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--A----NNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--c----hHHHHHhCCCCCCCEEEE
Confidence 344455444 47779999999999998888663 233445555532 1 223344458899997754
No 133
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.57 E-value=0.00032 Score=56.71 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHHc
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRL 105 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~ 105 (174)
.|++|+.+.||||+++.+.+.++
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHH
Confidence 48899999999999998888775
No 134
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.56 E-value=0.00018 Score=49.63 Aligned_cols=60 Identities=18% Similarity=0.363 Sum_probs=35.6
Q ss_pred EEEEEeCCChhHHHHHHHHHHc----C--CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECCeEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGGKHI 147 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~----~--v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G~~i 147 (174)
++.|+.+||++|+.....+.+. . -......+|.. . ++..... ...|...+|+++ -+|+.+
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~--~-~~~~~~~-~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT--K-PEHDALK-EEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECC--C-CccHHHH-HhCCCccccEEEEEeCCCee
Confidence 6779999999999887666543 1 12334444432 1 1123333 334888999764 466654
No 135
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.54 E-value=0.00055 Score=44.77 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=53.2
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHh
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYR 158 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~ 158 (174)
.+|+.+. +.|.+++-+|...|++|+.+.++.. ......+.+.+......+|.+..+|..+.....+.++..
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRG--PGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCC--CCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5777765 7799999999999999999888752 112223344556678899999999998888877776643
No 136
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.54 E-value=0.00011 Score=53.08 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=42.7
Q ss_pred CCCEEEEEeCC--ChhHHHHHHHHHHcCCCC----eEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECCeEEecc
Q 030613 81 ENPVVVYSKTW--CSYSSEVKLLFKRLGVEP----LVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGGKHIGGC 150 (174)
Q Consensus 81 ~~~Vviy~~~~--Cp~C~~ak~~L~~~~v~~----~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G~~iGG~ 150 (174)
...|+.|+.+| ||.|+.+..+|+++.-+| .++.++.+ +. + .+....+..++|++. -+|+.++.+
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid--~~---~-~la~~f~V~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRA--DE---Q-ALAARFGVLRTPALLFFRDGRYVGVL 99 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECC--CC---H-HHHHHcCCCcCCEEEEEECCEEEEEE
Confidence 34466788886 999999999998765444 23344432 12 2 345555999999664 499988665
No 137
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.49 E-value=0.00015 Score=49.93 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=35.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHHc----CC---CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEE
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRL----GV---EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHI 147 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~----~v---~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~i 147 (174)
-++.|+.+||++|+.....+.+. .- .+....+|.. .. .+ +.+..+...+|++++ +|+.+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~--~~---~~-~~~~~~v~~~Pt~~~~~~g~~~ 86 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT--QH---RE-LCSEFQVRGYPTLLLFKDGEKV 86 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC--CC---hh-hHhhcCCCcCCEEEEEeCCCee
Confidence 35668899999999887777553 11 2344444432 11 12 333348889997654 77644
No 138
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.49 E-value=0.00022 Score=54.20 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=37.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCC-----CCeEEEecccCCCcHHHHHHHHHHhCCCc------ccEE--EECCeEEecc
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGV-----EPLVIELDEMGPQGPQLQKLLERLTGQHT------VPNV--FIGGKHIGGC 150 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v-----~~~~vdid~~~~~~~~~~~~l~~~~g~~t------vP~I--fI~G~~iGG~ 150 (174)
|+.|+.+|||.|+.....|.+... ....+.||.. ...++ .+++ +..+ +|++ |.+|+.++.+
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd--~~~~l---a~~~-~V~~~~~v~~~PT~ilf~~Gk~v~r~ 124 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG--RFPNV---AEKF-RVSTSPLSKQLPTIILFQGGKEVARR 124 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC--CCHHH---HHHc-CceecCCcCCCCEEEEEECCEEEEEE
Confidence 777999999999999888866432 2334444432 22222 2222 4544 8855 5699877544
No 139
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.48 E-value=0.00025 Score=55.83 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=47.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCC---eEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEEe---cchHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEP---LVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHIG---GCTDTVK 155 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~---~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~iG---G~del~~ 155 (174)
||-|+.+||+.|+.+...|.++..+| .++.|+.. . .. ...+...+|++++ ||+.++ |+.++.-
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad-----~---~~-~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg 176 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST-----Q---CI-PNYPDKNLPTILVYRNGDIVKQFIGLLEFGG 176 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH-----H---hH-hhCCCCCCCEEEEEECCEEEEEEeCchhhCC
Confidence 44488899999999988888764433 45555531 1 12 3348889996654 998654 4443311
Q ss_pred -HHhhCchHHHHHhcc
Q 030613 156 -LYRKGELEPLLSEAK 170 (174)
Q Consensus 156 -l~~~g~L~~~L~~~g 170 (174)
-.....|+.+|.+.|
T Consensus 177 ~~~~~~~lE~~L~~~g 192 (192)
T cd02988 177 MNTTMEDLEWLLVQVG 192 (192)
T ss_pred CCCCHHHHHHHHHhcC
Confidence 113356777776654
No 140
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.47 E-value=0.00084 Score=46.68 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=34.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC----CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CC
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE----PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GG 144 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~----~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G 144 (174)
++.|+.+||++|++....+++...+ .....||-. +..+ +.+..+...+|++++ +|
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~-----~~~~-~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ-----KYES-LCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC-----chHH-HHHHcCCCcccEEEEEcCC
Confidence 6668999999999988888764322 233344431 1123 334348999997654 65
No 141
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.45 E-value=0.00039 Score=50.79 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=44.9
Q ss_pred HHHHHhcCC--CEEEE-EeCCChh--HH--H--------HHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCccc
Q 030613 74 SVKKTVSEN--PVVVY-SKTWCSY--SS--E--------VKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP 138 (174)
Q Consensus 74 ~l~~~i~~~--~Vviy-~~~~Cp~--C~--~--------ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP 138 (174)
.+.+.++.+ .|++| ...||+. |+ . +.++|+..++.+-.+|+|.. ++ +....|..++|
T Consensus 18 nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~-------~~-La~~~~I~~iP 89 (120)
T cd03065 18 NYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD-------AK-VAKKLGLDEED 89 (120)
T ss_pred hHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC-------HH-HHHHcCCcccc
Confidence 344444444 35554 5566654 97 2 23344444565666666642 33 34445899999
Q ss_pred EE--EECCeEEecchHHHHHHhhCchHHHHH
Q 030613 139 NV--FIGGKHIGGCTDTVKLYRKGELEPLLS 167 (174)
Q Consensus 139 ~I--fI~G~~iGG~del~~l~~~g~L~~~L~ 167 (174)
++ |.||+.+. +.... ....|.++|+
T Consensus 90 Tl~lfk~G~~v~-~~G~~---~~~~l~~~l~ 116 (120)
T cd03065 90 SIYVFKDDEVIE-YDGEF---AADTLVEFLL 116 (120)
T ss_pred EEEEEECCEEEE-eeCCC---CHHHHHHHHH
Confidence 66 56998664 53222 3345666654
No 142
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.43 E-value=0.00013 Score=52.64 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=37.6
Q ss_pred hcCCC--EEEEEeCCChhHHHHHHHHHHcCCCC----eEEEecccCCCcHHHHHHHHHHhCCCcccEE--EECCe
Q 030613 79 VSENP--VVVYSKTWCSYSSEVKLLFKRLGVEP----LVIELDEMGPQGPQLQKLLERLTGQHTVPNV--FIGGK 145 (174)
Q Consensus 79 i~~~~--Vviy~~~~Cp~C~~ak~~L~~~~v~~----~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I--fI~G~ 145 (174)
++.++ ++.|..+||++|+.....+++....+ ....||-. .. .+...+..+..++|++ |.+|+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d--~~---~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW--WP---QGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC--CC---hHHHHHhcCCcccCEEEEEECCc
Confidence 44444 56699999999999999888764332 22333321 11 2333233477888865 45766
No 143
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.42 E-value=0.00063 Score=47.52 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=34.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCC----CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGV----EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v----~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
-++.|+.+||++|++....+.+... ....+.++.. .++..+..++ .+..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~---~~~~~~~~~~-~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCD---EDKNKPLCGK-YGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecC---ccccHHHHHH-cCCCcCCEEEE
Confidence 3677899999999988777766422 2334444432 1112333334 48899997765
No 144
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.39 E-value=0.0005 Score=50.15 Aligned_cols=66 Identities=6% Similarity=0.131 Sum_probs=35.7
Q ss_pred EEEEEe-------CCChhHHHHHHHHHHc----C--CCCeEEEecccCCCcHHHHHHHHHHhCCC-cccEEEE--CCeEE
Q 030613 84 VVVYSK-------TWCSYSSEVKLLFKRL----G--VEPLVIELDEMGPQGPQLQKLLERLTGQH-TVPNVFI--GGKHI 147 (174)
Q Consensus 84 Vviy~~-------~~Cp~C~~ak~~L~~~----~--v~~~~vdid~~~~~~~~~~~~l~~~~g~~-tvP~IfI--~G~~i 147 (174)
++.|+. +|||+|+.+...|++. . +.+-.+|++... .-.+....+....+.. ++|++++ +|+.+
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~-~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRP-YWRDPNNPFRTDPKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcc-cccCcchhhHhccCcccCCCEEEEEcCCcee
Confidence 666888 8999999887777553 3 333344444310 0000112233334666 8997765 44444
Q ss_pred ecc
Q 030613 148 GGC 150 (174)
Q Consensus 148 GG~ 150 (174)
-|.
T Consensus 104 ~~~ 106 (119)
T cd02952 104 VED 106 (119)
T ss_pred cch
Confidence 443
No 145
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.38 E-value=0.0013 Score=43.32 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=50.0
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 90 ~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
..||+|.+++-+|+.+|++|+.+.++.. + .+..+.+.+......+|.+..+|+.+.....+.++
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~--~-~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPFEEILVPLY--T-PDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeCCC--C-ccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 5699999999999999999999988753 2 12234456677788999999999888777666554
No 146
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.38 E-value=0.001 Score=53.98 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhh
Q 030613 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRK 159 (174)
Q Consensus 90 ~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~ 159 (174)
..||+|++++-.|..+|++|+.+++|.. .. .+.+.+......||++..+|..+.....+.++..+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~--~~---~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLK--RK---PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCC--CC---CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHH
Confidence 4699999999999999999999999863 11 24456666778899999999999888888776653
No 147
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.36 E-value=0.0011 Score=46.89 Aligned_cols=57 Identities=12% Similarity=0.378 Sum_probs=34.8
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcC-----CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLG-----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~-----v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
.-++.|+.+|||+|++....+.+.. ..+....|+.. .+. .....+..+...+|++++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d-~~~---~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD-GEQ---REFAKEELQLKSFPTILF 84 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC-ccc---hhhHHhhcCCCcCCEEEE
Confidence 3466799999999999988887642 12334444432 011 222334458889997753
No 148
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.35 E-value=0.00075 Score=45.38 Aligned_cols=66 Identities=17% Similarity=0.356 Sum_probs=40.5
Q ss_pred hHHHHHHHHhcCCC--EEEEEeCCChhHHHHHHHHHH-------cCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEE
Q 030613 70 RLEESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV 140 (174)
Q Consensus 70 ~~~~~l~~~i~~~~--Vviy~~~~Cp~C~~ak~~L~~-------~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I 140 (174)
...+.+.++.+.++ ++.|+.+||++|+...+.+-. ..-.|..+.||.. ..+....+.. ..+|.+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~---~~~~~~~~~~----~~~P~~ 77 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVD---DEDPNAQFDR----QGYPTF 77 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETT---THHHHHHHHH----CSSSEE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcC---CCChhHHhCC----ccCCEE
Confidence 45566666666665 566888999999988766622 3445777777753 2222222222 349977
Q ss_pred EE
Q 030613 141 FI 142 (174)
Q Consensus 141 fI 142 (174)
++
T Consensus 78 ~~ 79 (82)
T PF13899_consen 78 FF 79 (82)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 149
>PLN02473 glutathione S-transferase
Probab=97.33 E-value=0.0012 Score=51.69 Aligned_cols=73 Identities=22% Similarity=0.142 Sum_probs=56.1
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
.+.+|+.+.||+|.+++-+|.++|++|+.+.++.. +.+..............||.+..||..|....-+.++.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~--~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLD--KLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCc--ccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHH
Confidence 36789999999999999999999999999888753 22222233334566788999999998888887776654
No 150
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.25 E-value=0.00069 Score=48.61 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=34.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCC-------CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVE-------PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~-------~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
-++.|+.+||++|+.....+.+..-. .....+|. +.+...+..++ .+...+|++++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~---~~~~~~~~~~~-~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDC---ADEENVALCRD-FGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEec---cchhhHHHHHh-CCCCCCCEEEE
Confidence 36668899999999888887664322 22233332 11223343334 48899997765
No 151
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.25 E-value=0.00053 Score=47.28 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=33.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcC----CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLG----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~----v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
++.|+.+||++|++....|.+.. -.+....+|.. .. .+..++ .+...+|++++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~--~~---~~~~~~-~~i~~~P~~~~ 78 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD--VH---QSLAQQ-YGVRGFPTIKV 78 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc--ch---HHHHHH-CCCCccCEEEE
Confidence 66788899999999988776632 22344455432 12 233333 48899997654
No 152
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.24 E-value=0.0006 Score=48.64 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=33.4
Q ss_pred EEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 87 YSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 87 y~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
|+.+.|.-|++|+++|++.|++|+++|+.+.+....++.+.+...
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~ 45 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKL 45 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHh
Confidence 788999999999999999999999999987655667777777665
No 153
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.20 E-value=0.00035 Score=48.11 Aligned_cols=55 Identities=15% Similarity=0.385 Sum_probs=35.0
Q ss_pred CEEEEEeCCChhHHHHHHHHHHc----C--CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~----~--v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
-++.|+.+||++|++....+.+. . -.+....+|.. . + ..+..++ .+..++|.+++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~--~-~-~~~~~~~-~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD--E-A-NKDLAKK-YGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECC--C-c-chhhHHh-CCCCCcCEEEE
Confidence 36779999999999888877653 2 22455566542 1 0 1233333 48889997765
No 154
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.16 E-value=0.00083 Score=54.16 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=38.0
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCC----CeEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECCeEE
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVE----PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGGKHI 147 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~----~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G~~i 147 (174)
-++.|+.+||++|++....+++..-+ .....+|.. +..+ +.+..+..++|+++ -+|+.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~-----~~~~-l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT-----RALN-LAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc-----ccHH-HHHHcCCCcCCEEEEEECCEEE
Confidence 36779999999999998888764322 233344431 1133 33445889999665 488765
No 155
>PTZ00062 glutaredoxin; Provisional
Probab=97.15 E-value=0.0011 Score=52.66 Aligned_cols=66 Identities=8% Similarity=0.002 Sum_probs=44.6
Q ss_pred HHHHHHHhc--CCC-EEEEEeCCChhHHHHHHHHHHcCCCC---eEEEecccCCCcHHHHHHHHHHhCCCcccEE--EEC
Q 030613 72 EESVKKTVS--ENP-VVVYSKTWCSYSSEVKLLFKRLGVEP---LVIELDEMGPQGPQLQKLLERLTGQHTVPNV--FIG 143 (174)
Q Consensus 72 ~~~l~~~i~--~~~-Vviy~~~~Cp~C~~ak~~L~~~~v~~---~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I--fI~ 143 (174)
.+.+.+.++ ... |+.|+.+|||.|+.+..+|.++.-+| .++.|+. + .+...||.+ |-|
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~---d-----------~~V~~vPtfv~~~~ 71 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNL---A-----------DANNEYGVFEFYQN 71 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEcc---c-----------cCcccceEEEEEEC
Confidence 345556666 344 44566899999999999998876554 5556653 1 488889954 458
Q ss_pred CeEEecch
Q 030613 144 GKHIGGCT 151 (174)
Q Consensus 144 G~~iGG~d 151 (174)
|+.|+.++
T Consensus 72 g~~i~r~~ 79 (204)
T PTZ00062 72 SQLINSLE 79 (204)
T ss_pred CEEEeeee
Confidence 88776543
No 156
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0017 Score=52.43 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=58.4
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHh-CCCcccEEEECCeEEecchHHHHHHh
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT-GQHTVPNVFIGGKHIGGCTDTVKLYR 158 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~-g~~tvP~IfI~G~~iGG~del~~l~~ 158 (174)
..|.+|+.-.|||.+|++-.|+.+|++|+++++|-. + ..+.+.+.. -+..||++.-||+.|+-.-.+.++.+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~--~---Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiD 80 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT--N---KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYID 80 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC--C---CCHHHHHhccccccCCEEEECCceehhhHHHHHHHH
Confidence 569999999999999999999999999999999863 1 234455554 57789999999999887776666643
No 157
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.08 E-value=0.00054 Score=51.50 Aligned_cols=54 Identities=7% Similarity=0.234 Sum_probs=33.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCC------eEEEecccCCCcHHHHHHHHHHhCCCcc-cEE-E-ECCe
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEP------LVIELDEMGPQGPQLQKLLERLTGQHTV-PNV-F-IGGK 145 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~------~~vdid~~~~~~~~~~~~l~~~~g~~tv-P~I-f-I~G~ 145 (174)
|+-|+.+||+.|+....+|++...++ -.+|||+. ++ +....+..+. |.+ | -+|+
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-------~d-la~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-------PD-FNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-------HH-HHHHcCccCCCcEEEEEECCe
Confidence 44599999999999999998865332 23455442 33 3344466644 455 3 3666
No 158
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.99 E-value=0.0029 Score=52.32 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCEEEEEeCCChhHHHHHHHHHH----cCCCCeEEEecccCC----CcHHHHHHHHHHhCCCcccEEEE
Q 030613 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKR----LGVEPLVIELDEMGP----QGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 73 ~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~----~~v~~~~vdid~~~~----~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
..++++.....++.|+.+|||+|+.....|++ +++.+..|++|.... .-..-.. +.+..|...+|.+|+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~-la~~~gV~~vPtl~L 235 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAG-QAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHH-HHHHcCCCcCCeEEE
Confidence 34455555556777999999999988877765 455555566654210 0000022 233448999997765
No 159
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0019 Score=55.48 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=56.8
Q ss_pred CCchhHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHH---cCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 66 SYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKR---LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 66 ~~~~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~---~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
-..+++.+.++.+-..-...-|..-.|..|..+.+.|.- ++-....+-|| +.-++++.... +...||+||+
T Consensus 102 k~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~Id-----Ga~Fq~Evear-~IMaVPtvfl 175 (520)
T COG3634 102 KEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAID-----GALFQDEVEAR-NIMAVPTVFL 175 (520)
T ss_pred chhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEec-----chhhHhHHHhc-cceecceEEE
Confidence 345677888888877778888888777777777666665 44444445554 45677777665 8899999999
Q ss_pred CCeEEec
Q 030613 143 GGKHIGG 149 (174)
Q Consensus 143 ~G~~iGG 149 (174)
||+..|.
T Consensus 176 nGe~fg~ 182 (520)
T COG3634 176 NGEEFGQ 182 (520)
T ss_pred cchhhcc
Confidence 9997764
No 160
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.95 E-value=0.0044 Score=44.88 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=16.1
Q ss_pred EEEEEeCCChhHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
++.|+.+|||.|++....|.+
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~~ 42 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLVE 42 (131)
T ss_pred EEEEECCCChHHHHHhHHHHH
Confidence 555788999999987666653
No 161
>PLN02378 glutathione S-transferase DHAR1
Probab=96.93 E-value=0.0034 Score=49.60 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=48.8
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 90 ~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
..||+|.++.-+|+++|++|+.+.|+.. .. .+.+.+......||++..||..+.....+.++.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~--~~---~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL 80 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLS--DK---PQWFLDISPQGKVPVLKIDDKWVTDSDVIVGIL 80 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcc--cC---CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 3599999999999999999999888763 22 223556667889999999998777666665554
No 162
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.91 E-value=0.0026 Score=49.67 Aligned_cols=62 Identities=19% Similarity=0.460 Sum_probs=36.7
Q ss_pred EEEEEeCCChhHHHHHHHH----HHcCCCCeEEEecccC----CC-cHHHHHHHHHHhCC--CcccEEEE---CCe
Q 030613 84 VVVYSKTWCSYSSEVKLLF----KRLGVEPLVIELDEMG----PQ-GPQLQKLLERLTGQ--HTVPNVFI---GGK 145 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L----~~~~v~~~~vdid~~~----~~-~~~~~~~l~~~~g~--~tvP~IfI---~G~ 145 (174)
+++|+.+|||+|++....| +++++++.-|.+|... +. -..-...+....|. ..+|..|+ +|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 8899999999999875444 4566665556666421 00 00001223334453 68997775 664
No 163
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.91 E-value=0.0041 Score=49.75 Aligned_cols=72 Identities=15% Similarity=0.369 Sum_probs=49.0
Q ss_pred hHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHH----cCCCCeEEEecccC----CCcHHHHHHHHHHhCCCcccEEE
Q 030613 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKR----LGVEPLVIELDEMG----PQGPQLQKLLERLTGQHTVPNVF 141 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~----~~v~~~~vdid~~~----~~~~~~~~~l~~~~g~~tvP~If 141 (174)
...+.|+++.+...+++|..+.||+|+....+|+. +|++...|.+|... ++...-....++ .|...+|.+|
T Consensus 110 ~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~-l~v~~~Pal~ 188 (215)
T PF13728_consen 110 KRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKR-LGVKVTPALF 188 (215)
T ss_pred HHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHH-cCCCcCCEEE
Confidence 44567778888888999999999999987777654 67777777777421 000000222233 4889999888
Q ss_pred E
Q 030613 142 I 142 (174)
Q Consensus 142 I 142 (174)
+
T Consensus 189 L 189 (215)
T PF13728_consen 189 L 189 (215)
T ss_pred E
Confidence 6
No 164
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.88 E-value=0.0099 Score=44.83 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=17.2
Q ss_pred EEEEEeCCChhHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
++-|+.+|||.|++....|.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 444888999999998888865
No 165
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=96.88 E-value=0.0037 Score=51.50 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=58.1
Q ss_pred CCchhHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCe
Q 030613 66 SYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK 145 (174)
Q Consensus 66 ~~~~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~ 145 (174)
...++++-.++.... .++. ...||+|.++.-+|+++|++|+.+.|+.. + ..+.+.+..-...||.+..+|.
T Consensus 51 ~~~~~~~~~~~~~~~-~~~~---~g~cp~s~rV~i~L~ekgi~ye~~~vdl~--~---~~~~fl~iNP~GkVPvL~~d~~ 121 (265)
T PLN02817 51 TMSSPLEVCVKASLT-VPNK---LGDCPFCQRVLLTLEEKHLPYDMKLVDLT--N---KPEWFLKISPEGKVPVVKLDEK 121 (265)
T ss_pred CCCccHHHHHhcccC-CCCc---CCCCcHHHHHHHHHHHcCCCCEEEEeCcC--c---CCHHHHhhCCCCCCCEEEECCE
Confidence 334455656665542 2333 23499999999999999999999888753 1 1233455667788999999998
Q ss_pred EEecchHHHHHH
Q 030613 146 HIGGCTDTVKLY 157 (174)
Q Consensus 146 ~iGG~del~~l~ 157 (174)
.+....-+.++.
T Consensus 122 ~L~ES~aI~~YL 133 (265)
T PLN02817 122 WVADSDVITQAL 133 (265)
T ss_pred EEecHHHHHHHH
Confidence 887777666654
No 166
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.87 E-value=0.0061 Score=55.43 Aligned_cols=75 Identities=16% Similarity=0.431 Sum_probs=43.8
Q ss_pred hhHHHHHHHHhcCC-C-EEEEEeCCChhHHHHHHH-H------HHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccE
Q 030613 69 SRLEESVKKTVSEN-P-VVVYSKTWCSYSSEVKLL-F------KRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPN 139 (174)
Q Consensus 69 ~~~~~~l~~~i~~~-~-Vviy~~~~Cp~C~~ak~~-L------~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~ 139 (174)
++.++.+++..... + ++-|+.+||++|+..+.. + ++++ ++..+.+|.. .++++.++.++++ +...+|+
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt-~~~~~~~~l~~~~-~v~g~Pt 537 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVT-ANNAEDVALLKHY-NVLGLPT 537 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECC-CCChhhHHHHHHc-CCCCCCE
Confidence 45566666555443 3 445889999999987654 2 1222 3444444432 1334445555554 8999997
Q ss_pred EEE---CCeE
Q 030613 140 VFI---GGKH 146 (174)
Q Consensus 140 IfI---~G~~ 146 (174)
+++ ||+.
T Consensus 538 ~~~~~~~G~~ 547 (571)
T PRK00293 538 ILFFDAQGQE 547 (571)
T ss_pred EEEECCCCCC
Confidence 654 4654
No 167
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=96.82 E-value=0.0033 Score=49.01 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=53.7
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 86 iy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+|+...||+|.+++-+|.++|++|+.+.++.. ..+....+.+.+.+...++|.+..||..+.....+..+.
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl 72 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLL-RDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYL 72 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccc-cccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHH
Confidence 68888899999999999999999998887741 011222334556667788999999998888777766654
No 168
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0019 Score=50.25 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=50.3
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEE-ECCeEEecchHHHHHH
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF-IGGKHIGGCTDTVKLY 157 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If-I~G~~iGG~del~~l~ 157 (174)
.+|....||||.+|+.++--++++++..-++.+ +++-. . ++-|+..||.+. -+|++.+-.-|+.++.
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nD---De~Tp--~-rmiG~KqVPiL~Kedg~~m~ESlDIV~y~ 69 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLND---DEETP--I-RMIGQKQVPILQKEDGRAMPESLDIVHYV 69 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccC---cccCh--h-hhhcccccceEEccccccchhhhHHHHHH
Confidence 478889999999999999999999887777653 22211 2 334899999766 5889998877766654
No 169
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.77 E-value=0.0082 Score=46.87 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.2
Q ss_pred CCEEEEEeCCChhHHHHHHHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
..|++|+.+.||||+++.+.+.+
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhh
Confidence 45889999999999999998874
No 170
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.69 E-value=0.01 Score=43.21 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=16.0
Q ss_pred EEEEEeCCChhHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
++.|+.+|||.|++....|.+
T Consensus 21 ll~F~atwC~~C~~~~p~l~~ 41 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVE 41 (132)
T ss_pred EEEEECCCCchHHHHHHHHHH
Confidence 455888999999987666643
No 171
>PTZ00102 disulphide isomerase; Provisional
Probab=96.68 E-value=0.0039 Score=54.62 Aligned_cols=58 Identities=17% Similarity=0.354 Sum_probs=34.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHH-------cCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeE
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKH 146 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~-------~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~ 146 (174)
-++.|+.+||++|++....+.+ .+.++....||-. .. .+ +.+..+..++|++++ +|+.
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~--~~---~~-l~~~~~i~~~Pt~~~~~~g~~ 118 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT--EE---ME-LAQEFGVRGYPTIKFFNKGNP 118 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC--CC---HH-HHHhcCCCcccEEEEEECCce
Confidence 3667899999999988765543 2223444445432 12 23 333348889997654 6653
No 172
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=96.62 E-value=0.0088 Score=45.39 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=27.1
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHH----cCCCCeEEEecc
Q 030613 80 SENPVVVYSKTWCSYSSEVKLLFKR----LGVEPLVIELDE 116 (174)
Q Consensus 80 ~~~~Vviy~~~~Cp~C~~ak~~L~~----~~v~~~~vdid~ 116 (174)
....++.|+.+|||+|++....|.+ +++.+..+++|.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 4455899999999999988877765 455545566664
No 173
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.61 E-value=0.0057 Score=52.96 Aligned_cols=67 Identities=15% Similarity=0.358 Sum_probs=40.3
Q ss_pred HHHHHhcCCC--EEEEEeCCChhHHHHHHHHHH-------cCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--
Q 030613 74 SVKKTVSENP--VVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI-- 142 (174)
Q Consensus 74 ~l~~~i~~~~--Vviy~~~~Cp~C~~ak~~L~~-------~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI-- 142 (174)
.+.++++.++ ++.|+.+||++|++....+.+ .+-......||.. .. .+ +.+..+...+|++++
T Consensus 10 ~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--~~---~~-l~~~~~i~~~Pt~~~~~ 83 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT--EE---KD-LAQKYGVSGYPTLKIFR 83 (462)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC--Cc---HH-HHHhCCCccccEEEEEe
Confidence 3444455555 567999999999988766654 2222444555542 12 23 334448889997644
Q ss_pred CCeE
Q 030613 143 GGKH 146 (174)
Q Consensus 143 ~G~~ 146 (174)
+|+.
T Consensus 84 ~g~~ 87 (462)
T TIGR01130 84 NGED 87 (462)
T ss_pred CCcc
Confidence 6664
No 174
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=96.56 E-value=0.0024 Score=43.86 Aligned_cols=53 Identities=11% Similarity=0.365 Sum_probs=32.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCC------CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGV------EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v------~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
-++.|+.+||++|+.....+.+..- .+....+|.. .. +.... .+..++|++++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~---~~---~~~~~-~~~~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT---AN---DVPSE-FVVDGFPTILF 79 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc---ch---hhhhh-ccCCCCCEEEE
Confidence 3667899999999998888866432 2334444432 11 22223 35688997765
No 175
>PLN02395 glutathione S-transferase
Probab=96.52 E-value=0.015 Score=45.51 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=54.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHh
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYR 158 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~ 158 (174)
+++|+...| .+.+++-+|.++|++|+.+.++.. .++...+.+.+..-...||++..+|..+.....+.++..
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~--~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLM--KGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccc--cCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 688987665 489999999999999999888753 222333345566678889999999988877777666554
No 176
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.46 E-value=0.023 Score=40.31 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhcCCC-E-EEEEeCCChhHHHHHH-HHHHc------CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccE
Q 030613 69 SRLEESVKKTVSENP-V-VVYSKTWCSYSSEVKL-LFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPN 139 (174)
Q Consensus 69 ~~~~~~l~~~i~~~~-V-viy~~~~Cp~C~~ak~-~L~~~------~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~ 139 (174)
...++.++.+.+.++ + +.+..+||++|+...+ .|.+- +-.|..+.+|.. ..+..+. ....+...+|.
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~---~~e~~~~-~~~~~~~~~P~ 79 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDID---SSEGQRF-LQSYKVDKYPH 79 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCC---CccHHHH-HHHhCccCCCe
Confidence 345667777777666 3 3466799999997643 45432 224555555542 2344444 34447889996
Q ss_pred EE-E---CCeEE
Q 030613 140 VF-I---GGKHI 147 (174)
Q Consensus 140 If-I---~G~~i 147 (174)
+. + +|+.+
T Consensus 80 ~~~i~~~~g~~l 91 (114)
T cd02958 80 IAIIDPRTGEVL 91 (114)
T ss_pred EEEEeCccCcEe
Confidence 64 4 45544
No 177
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.011 Score=46.22 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=55.2
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCe-EEecchHHHHHHh
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK-HIGGCTDTVKLYR 158 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~-~iGG~del~~l~~ 158 (174)
++|+.+.+|+|.++.-.|.++|++|+.+.|+.. . ....+.+...+....||++..+|- .+-....+.++.+
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~--~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~ 73 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLD--A-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLA 73 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcc--c-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHH
Confidence 578888899999999999999999999999874 2 344555667777889999998774 5666655555543
No 178
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.40 E-value=0.057 Score=35.88 Aligned_cols=69 Identities=19% Similarity=0.107 Sum_probs=48.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHH-HHhCCCcccEEEECCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLE-RLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~-~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
.++|..+..+.|.+++-+|.+.|++|+.+.++.. ++..+.-. .......+|++.+||..+....-+..+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~----~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA----EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH----HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence 5788888889999999999999999999888742 12111100 011245899999999877766555544
No 179
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.34 E-value=0.01 Score=41.59 Aligned_cols=56 Identities=13% Similarity=0.270 Sum_probs=33.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCC----CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEE
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGV----EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v----~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If 141 (174)
-|+.|+.+|||+|++....|+++.- ....+-+.. .+.++..+.++++ +...+|.++
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~--~~~~~~~~~~~~~-~~~~~p~~~ 83 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASD--GEKAEHQRFLKKH-GLEAFPYVL 83 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeC--CCHHHHHHHHHHh-CCCCCcEEe
Confidence 3667888999999988777766421 233343321 2344556666554 555577654
No 180
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=96.33 E-value=0.024 Score=44.49 Aligned_cols=71 Identities=14% Similarity=0.285 Sum_probs=50.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE-----CCe--EEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI-----GGK--HIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI-----~G~--~iGG~del~~l 156 (174)
+++|..+ +|+|.++.-+|+++|++|+.++++.. .++...+.+.+......||++.. ||+ .+-...-+.++
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~--~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLG--KGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCc--ccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 5688776 79999999999999999999988753 23333344566767888999987 442 35544444444
Q ss_pred H
Q 030613 157 Y 157 (174)
Q Consensus 157 ~ 157 (174)
.
T Consensus 79 L 79 (215)
T PRK13972 79 L 79 (215)
T ss_pred H
Confidence 3
No 181
>PLN02309 5'-adenylylsulfate reductase
Probab=96.30 E-value=0.0073 Score=53.53 Aligned_cols=55 Identities=15% Similarity=0.414 Sum_probs=33.6
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC-----CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE-----PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~-----~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
+|.|..+||++|+.....+.++... +.+..+|.. . ...+..++..+..++|+|++
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d---~-~~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD---G-DQKEFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC---C-cchHHHHhhCCCceeeEEEE
Confidence 6679999999999998888765322 233334321 0 11232333348889997754
No 182
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=96.26 E-value=0.02 Score=37.92 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHh
Q 030613 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYR 158 (174)
Q Consensus 90 ~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~ 158 (174)
+.+|+|-++..+|+-.+++|+.+..... ..+....+|.+..+|+.|+|++.+.+..+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~------------~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNP------------WRSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCC------------CCCCCCccCEEEECCEEecChHHHHHHHH
Confidence 3479999999999999999976643321 11234569999999999999998887653
No 183
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.014 Score=46.51 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 91 WCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 91 ~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
.||+|+++...|..++++|....||.. .-.+.++..++...+|.+..||+.+-..+.+.+..
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~-----~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~L 81 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLS-----RKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFL 81 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecC-----CCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHH
Confidence 599999999999999999987777753 11445677788999999999999999888776543
No 184
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.17 E-value=0.021 Score=47.01 Aligned_cols=72 Identities=14% Similarity=0.279 Sum_probs=49.1
Q ss_pred hHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHH----HHcCCCCeEEEecccC-C---CcHHHHHHHHHHhCCCcccEEE
Q 030613 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLF----KRLGVEPLVIELDEMG-P---QGPQLQKLLERLTGQHTVPNVF 141 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L----~~~~v~~~~vdid~~~-~---~~~~~~~~l~~~~g~~tvP~If 141 (174)
...+.++++.+...+++|..+.||+|++.-.+| +++|++...|.+|... + +..--....+++ |...+|.+|
T Consensus 140 ~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~Pal~ 218 (256)
T TIGR02739 140 QKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKYFPALY 218 (256)
T ss_pred HHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCccCceEE
Confidence 345677788888899999999999999876666 4578877788887531 0 000001122333 788999887
Q ss_pred E
Q 030613 142 I 142 (174)
Q Consensus 142 I 142 (174)
+
T Consensus 219 L 219 (256)
T TIGR02739 219 L 219 (256)
T ss_pred E
Confidence 6
No 185
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.15 E-value=0.023 Score=46.55 Aligned_cols=69 Identities=13% Similarity=0.279 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHH----HcCCCCeEEEecccCCCcHHH------HHHHHHHhCCCcccEE
Q 030613 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFK----RLGVEPLVIELDEMGPQGPQL------QKLLERLTGQHTVPNV 140 (174)
Q Consensus 71 ~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~----~~~v~~~~vdid~~~~~~~~~------~~~l~~~~g~~tvP~I 140 (174)
..+.++++.+...++.|..+.||+|++.-.+|+ ++|++...|.+|... .+++ ....++ -|...+|.+
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~--~p~fp~~~~d~gqa~~-l~v~~~PAl 210 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVI--NPLLPDSRTDQGQAQR-LGVKYFPAL 210 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCC--CCCCCCCccChhHHHh-cCCcccceE
Confidence 346677888889999999999999998766665 467777777777521 1111 111223 378899988
Q ss_pred EE
Q 030613 141 FI 142 (174)
Q Consensus 141 fI 142 (174)
|+
T Consensus 211 ~L 212 (248)
T PRK13703 211 ML 212 (248)
T ss_pred EE
Confidence 86
No 186
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.14 E-value=0.025 Score=42.60 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=17.0
Q ss_pred CCEEEEEeCCChhHHHHHHHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
.-++.|+.+|||+|+.....|.+
T Consensus 63 ~~~l~f~a~~C~~C~~~~~~l~~ 85 (173)
T PRK03147 63 GVFLNFWGTWCKPCEKEMPYMNE 85 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHH
Confidence 34667888999999986655544
No 187
>PRK11752 putative S-transferase; Provisional
Probab=96.11 E-value=0.032 Score=45.68 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=54.7
Q ss_pred HhcCCCEEEEEeCCChhHHHHHHHHHHc------CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECC----eEE
Q 030613 78 TVSENPVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG----KHI 147 (174)
Q Consensus 78 ~i~~~~Vviy~~~~Cp~C~~ak~~L~~~------~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G----~~i 147 (174)
....+++++|+.+ ||+|.+++-+|+++ |++|+.+.|+.. ..+...+.+.+..-..+||++..++ ..+
T Consensus 39 ~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~--~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L 115 (264)
T PRK11752 39 PVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIG--EGDQFSSGFVEINPNSKIPALLDRSGNPPIRV 115 (264)
T ss_pred CCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCc--cccccCHHHHhhCCCCCCCEEEeCCCCCCeEE
Confidence 3455679999964 99999999999997 888998888753 2223334455666778899998752 456
Q ss_pred ecchHHHHHH
Q 030613 148 GGCTDTVKLY 157 (174)
Q Consensus 148 GG~del~~l~ 157 (174)
....-+.++.
T Consensus 116 ~ES~AIl~YL 125 (264)
T PRK11752 116 FESGAILLYL 125 (264)
T ss_pred EcHHHHHHHH
Confidence 6665555544
No 188
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.10 E-value=0.012 Score=40.40 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=36.4
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCC----CeEEEecccCCCcHHHHHHHHHHhCCC--cccEEEE
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVE----PLVIELDEMGPQGPQLQKLLERLTGQH--TVPNVFI 142 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~----~~~vdid~~~~~~~~~~~~l~~~~g~~--tvP~IfI 142 (174)
.-+++|..+||+.|..++..|++..-+ ...+-+|. .+..+.+.. .|.. .+|++.+
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~-----~~~~~~~~~-~~i~~~~~P~~~~ 74 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDA-----DDFGRHLEY-FGLKEEDLPVIAI 74 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEch-----HhhHHHHHH-cCCChhhCCEEEE
Confidence 346778889999999999999875433 34444443 223344444 4777 8998775
No 189
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.06 E-value=0.083 Score=40.31 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=49.6
Q ss_pred hcCCCEEE-EEeCCChhHHH----HHHHHHHc---CCCCeEEEecccCCCcHHHHHHHHH--------------------
Q 030613 79 VSENPVVV-YSKTWCSYSSE----VKLLFKRL---GVEPLVIELDEMGPQGPQLQKLLER-------------------- 130 (174)
Q Consensus 79 i~~~~Vvi-y~~~~Cp~C~~----ak~~L~~~---~v~~~~vdid~~~~~~~~~~~~l~~-------------------- 130 (174)
....-|.+ |+..|||.|+. .++++++. +.++++|=|+.+ .+..++.+.++.
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D-~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ 109 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD-RDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE 109 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC-CCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence 33433444 56799999984 45554443 445888877765 234444444442
Q ss_pred HhCCCcccEEEE---CCeEE--ecchHHHHHHhhCchHHHHHhccccc
Q 030613 131 LTGQHTVPNVFI---GGKHI--GGCTDTVKLYRKGELEPLLSEAKSAE 173 (174)
Q Consensus 131 ~~g~~tvP~IfI---~G~~i--GG~del~~l~~~g~L~~~L~~~g~~~ 173 (174)
.++..++|.+.+ +|..| -|-+++. ..-+.+.+++++++-++.
T Consensus 110 ky~v~~iP~l~i~~~dG~~v~~d~r~~v~-~~g~~~~~a~~~ew~~~~ 156 (157)
T KOG2501|consen 110 KYEVKGIPALVILKPDGTVVTEDARLLVQ-LGGSADPKALVDEWKALL 156 (157)
T ss_pred hcccCcCceeEEecCCCCEehHhhHHHHH-hhcccCHHHHHHHHHHhh
Confidence 346677886655 66544 2222222 221245566655554443
No 190
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.019 Score=51.22 Aligned_cols=68 Identities=18% Similarity=0.352 Sum_probs=45.4
Q ss_pred HHHHHHhcCCCE--EEEEeCCChhHH-------HHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEE--E
Q 030613 73 ESVKKTVSENPV--VVYSKTWCSYSS-------EVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV--F 141 (174)
Q Consensus 73 ~~l~~~i~~~~V--viy~~~~Cp~C~-------~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I--f 141 (174)
+-+.+.+..+.. |-|..|||.+|+ +|-..|.+.+-+.....||-. +-.+ +...++.+.+|++ |
T Consensus 33 dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat-----~~~~-~~~~y~v~gyPTlkiF 106 (493)
T KOG0190|consen 33 DNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT-----EESD-LASKYEVRGYPTLKIF 106 (493)
T ss_pred ccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc-----hhhh-hHhhhcCCCCCeEEEE
Confidence 446677888874 458999999997 455666666555566666642 2244 4444588999965 5
Q ss_pred ECCeE
Q 030613 142 IGGKH 146 (174)
Q Consensus 142 I~G~~ 146 (174)
.||+.
T Consensus 107 rnG~~ 111 (493)
T KOG0190|consen 107 RNGRS 111 (493)
T ss_pred ecCCc
Confidence 58874
No 191
>PRK10357 putative glutathione S-transferase; Provisional
Probab=96.01 E-value=0.021 Score=44.26 Aligned_cols=68 Identities=7% Similarity=0.077 Sum_probs=50.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE-CCeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI-GGKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI-~G~~iGG~del~~l 156 (174)
+.+|+...||++++++-+|+.+|++|+.++++.. .. ...+.+++....||++.. +|..+-...-+.++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~--~~---~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y 69 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPY--NA---DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEY 69 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCC--CC---chhhhhcCCccCCCeEEeCCCCeeecHHHHHHH
Confidence 3689999999999999999999999999888753 11 112334567788999985 67666655555443
No 192
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.021 Score=46.76 Aligned_cols=60 Identities=20% Similarity=0.432 Sum_probs=41.3
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCe---EEEecccCCCcHHHHHHHHHHhCCCcccE--EEECCeEEe
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPL---VIELDEMGPQGPQLQKLLERLTGQHTVPN--VFIGGKHIG 148 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~---~vdid~~~~~~~~~~~~l~~~~g~~tvP~--IfI~G~~iG 148 (174)
-+|=|+.+||+.|+++-.+|..+.-+|. +..||. ++.+.-. .-.|....|+ +|.||+.|.
T Consensus 24 v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdV-----d~c~~ta-a~~gV~amPTFiff~ng~kid 88 (288)
T KOG0908|consen 24 VVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDV-----DECRGTA-ATNGVNAMPTFIFFRNGVKID 88 (288)
T ss_pred EEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeH-----HHhhchh-hhcCcccCceEEEEecCeEee
Confidence 3556999999999999999998766652 334443 1333333 3348888995 467998764
No 193
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.99 E-value=0.022 Score=37.92 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHc
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRL 105 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~ 105 (174)
|++|..+.||+|..+...|.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5789999999999998888775
No 194
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=95.97 E-value=0.029 Score=39.77 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEe
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdi 114 (174)
.-++.|+.+|||+|+.....|.++.-.+..+-|
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i 54 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQLAADYPVVSV 54 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHHHHhhCCEEEE
Confidence 346678889999999887777665433444433
No 195
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=95.95 E-value=0.053 Score=35.77 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=48.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCC-CcccEEEEC-CeEEecchHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ-HTVPNVFIG-GKHIGGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~-~tvP~IfI~-G~~iGG~del~~l 156 (174)
+.+|..++ .|..++-+|+..|++|+.+.++.. .+++..+.+.+.... ..+|.+..+ |..+-..-.+..+
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~--~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~Y 73 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFE--KGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRY 73 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETT--TTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecc--cccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHH
Confidence 45566555 889999999999999999888853 233333445555556 789999999 9888776655544
No 196
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=95.90 E-value=0.033 Score=43.12 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=21.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCC-CCeEEEec
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGV-EPLVIELD 115 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v-~~~~vdid 115 (174)
|+.|+.+|||+|++....|.++.- .++++-|+
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~ 104 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMN 104 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 556889999999988777766421 23444443
No 197
>smart00594 UAS UAS domain.
Probab=95.89 E-value=0.068 Score=38.60 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=41.9
Q ss_pred CchhHHHHHHHHhcCCC--EEEEEeCCChhHHHHHH-HHHHc------CCCCeEEEecccCCCcHHHHHHHHHHhCCCcc
Q 030613 67 YGSRLEESVKKTVSENP--VVVYSKTWCSYSSEVKL-LFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQHTV 137 (174)
Q Consensus 67 ~~~~~~~~l~~~i~~~~--Vviy~~~~Cp~C~~ak~-~L~~~------~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tv 137 (174)
+....+++++++.+..+ ++.+..+||++|....+ +|..- +-.|-.+-+|.. ..+-.+.. ...+..++
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~---~~eg~~l~-~~~~~~~~ 87 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVD---TSEGQRVS-QFYKLDSF 87 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCC---ChhHHHHH-HhcCcCCC
Confidence 34566777777777754 44566799999986533 34332 113444445542 23334444 44488899
Q ss_pred cEEEE
Q 030613 138 PNVFI 142 (174)
Q Consensus 138 P~IfI 142 (174)
|.+.+
T Consensus 88 P~~~~ 92 (122)
T smart00594 88 PYVAI 92 (122)
T ss_pred CEEEE
Confidence 97655
No 198
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.76 E-value=0.048 Score=41.91 Aligned_cols=75 Identities=24% Similarity=0.529 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCC-EEE-EEeCCChhHHHHHH-HHHH------cCCCCeEEEecccCCCcHHHHHHH----HHHhCCCccc
Q 030613 72 EESVKKTVSENP-VVV-YSKTWCSYSSEVKL-LFKR------LGVEPLVIELDEMGPQGPQLQKLL----ERLTGQHTVP 138 (174)
Q Consensus 72 ~~~l~~~i~~~~-Vvi-y~~~~Cp~C~~ak~-~L~~------~~v~~~~vdid~~~~~~~~~~~~l----~~~~g~~tvP 138 (174)
.+.++.+.+.++ |.| .+.+||.+|+...+ .|.+ ++-.|..|.||.. +.+++.... +..+|..++|
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDre--e~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDRE--ERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETT--T-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccc--cCccHHHHHHHHHHHhcCCCCCC
Confidence 344555544444 333 56689999996543 4433 2334566667763 556654433 4456888899
Q ss_pred -EEEE--CCeEEe
Q 030613 139 -NVFI--GGKHIG 148 (174)
Q Consensus 139 -~IfI--~G~~iG 148 (174)
+||+ +|+.+-
T Consensus 105 l~vfltPdg~p~~ 117 (163)
T PF03190_consen 105 LTVFLTPDGKPFF 117 (163)
T ss_dssp EEEEE-TTS-EEE
T ss_pred ceEEECCCCCeee
Confidence 4555 777664
No 199
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=95.69 E-value=0.015 Score=51.71 Aligned_cols=56 Identities=13% Similarity=0.308 Sum_probs=34.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCC-------CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCe
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGV-------EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGK 145 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v-------~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~ 145 (174)
++.|+.+||++|+.....|++..- .+-.+++|.. . .+...+..+..++|+|.+ +|.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~---~---~~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD---Q---KEFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC---c---cHHHHHHcCCCccceEEEEECCC
Confidence 566999999999999888876432 2333455431 1 122223347888996654 653
No 200
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.68 E-value=0.064 Score=41.71 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=16.1
Q ss_pred EEEEEeCCChhHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
|+.|+.+|||.|++....+.+
T Consensus 78 vl~F~atwCp~C~~~lp~l~~ 98 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKS 98 (189)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 566889999999977665543
No 201
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=95.67 E-value=0.043 Score=37.94 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=36.4
Q ss_pred EEEEeC-CChhHH------HHHHHHHH--------cCCCCeEEEecccCCCcHHHHHHHHHHh-CCCcccEEEECCeEEe
Q 030613 85 VVYSKT-WCSYSS------EVKLLFKR--------LGVEPLVIELDEMGPQGPQLQKLLERLT-GQHTVPNVFIGGKHIG 148 (174)
Q Consensus 85 viy~~~-~Cp~C~------~ak~~L~~--------~~v~~~~vdid~~~~~~~~~~~~l~~~~-g~~tvP~IfI~G~~iG 148 (174)
+||+.. -|+-|. ....+|+. ....++++||... ++.++.++...++- .-.-+|.|.|+|+.||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p-~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~ 79 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENP-PENDHDQQFAERILEDELFYPLVVINDEIVA 79 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT-----HHHHHHHHHHHTTSS-SSEEEETTEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCC-CccHHHHHHHHHHHhcccccceEEECCEEEe
Confidence 467774 377763 44444443 2334577888764 23344555555543 3445999999999997
Q ss_pred c-chHHH
Q 030613 149 G-CTDTV 154 (174)
Q Consensus 149 G-~del~ 154 (174)
. +-.|+
T Consensus 80 EGnp~LK 86 (93)
T PF07315_consen 80 EGNPQLK 86 (93)
T ss_dssp ESS--HH
T ss_pred cCCccHH
Confidence 4 43343
No 202
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=95.67 E-value=0.02 Score=42.43 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=26.6
Q ss_pred CchhHHHHHHHHhcCCC--EEEEEeCCChhHHHHHHHH
Q 030613 67 YGSRLEESVKKTVSENP--VVVYSKTWCSYSSEVKLLF 102 (174)
Q Consensus 67 ~~~~~~~~l~~~i~~~~--Vviy~~~~Cp~C~~ak~~L 102 (174)
+....++.++.+.+.++ +++|+++|||+|++.++..
T Consensus 8 W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 8 WVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred chhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 33466778888877776 4458889999999886654
No 203
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=95.50 E-value=0.029 Score=38.20 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=18.7
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHHc
Q 030613 81 ENPVVVYSKTWCSYSSEVKLLFKRL 105 (174)
Q Consensus 81 ~~~Vviy~~~~Cp~C~~ak~~L~~~ 105 (174)
..-++.|..+|||+|.+....|.+.
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHH
Confidence 3347778889999999777666654
No 204
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=95.49 E-value=0.062 Score=38.46 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=18.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHHc
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRL 105 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~ 105 (174)
-|+.|+.+|||.|.+....|.++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHH
Confidence 36678899999999887777664
No 205
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.47 E-value=0.065 Score=40.09 Aligned_cols=72 Identities=25% Similarity=0.358 Sum_probs=52.2
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCC----CcccEEEECCeEEecc---hHH
Q 030613 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQ----HTVPNVFIGGKHIGGC---TDT 153 (174)
Q Consensus 81 ~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~----~tvP~IfI~G~~iGG~---del 153 (174)
..++++|-.|+|.=|+.-.+.|+..|.+...++.+.. ..+++..|. .+.=+..|||.+|-|- +++
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~--------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI 96 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF--------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAI 96 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH--------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHH
Confidence 4459999999999999999999999988777766642 223332233 3466899999999995 455
Q ss_pred HHHHhhC
Q 030613 154 VKLYRKG 160 (174)
Q Consensus 154 ~~l~~~g 160 (174)
..+.+++
T Consensus 97 ~~ll~~~ 103 (149)
T COG3019 97 ARLLAEK 103 (149)
T ss_pred HHHHhCC
Confidence 5554443
No 206
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=95.44 E-value=0.026 Score=44.80 Aligned_cols=68 Identities=26% Similarity=0.399 Sum_probs=36.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeE----EEec-------ccC---CCcHHHHHHHHHHhCC--CcccEEEECCe-E
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLV----IELD-------EMG---PQGPQLQKLLERLTGQ--HTVPNVFIGGK-H 146 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~----vdid-------~~~---~~~~~~~~~l~~~~g~--~tvP~IfI~G~-~ 146 (174)
|.+|+..+|+-|--|-++|.++.-+..+ +.|| ++. +.-.+.|....+..|. -..||++|||+ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 6899999999999999999875432111 1121 110 0112234444444443 34899999995 6
Q ss_pred Eecch
Q 030613 147 IGGCT 151 (174)
Q Consensus 147 iGG~d 151 (174)
++|.+
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 67776
No 207
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.076 Score=42.58 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=60.6
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
++++|+...-|.|+++.-.++..|++|+.+.++.. .+++..+++.......+||.+.-+|-.+-....+..+.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~--~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl 74 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLV--KGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYL 74 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecc--ccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHH
Confidence 57899999999999999999999999999988775 56666666667778889999999988887776665544
No 208
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=95.30 E-value=0.11 Score=34.64 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=42.8
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 90 ~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+..+.|.++.-+|+..|++|+.+++.. .. .......||.+.+||+.|++..-+..+.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~----~~-------~~~P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN----AE-------FMSPSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC----cc-------ccCCCCcccEEEECCEEEeCHHHHHHHH
Confidence 457889999999999999999885432 10 0112357999999999999887776654
No 209
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=95.29 E-value=0.079 Score=40.46 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=17.6
Q ss_pred EEEEEeCCChhHHHHHHHHHHc
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRL 105 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~ 105 (174)
++.|+.+|||.|++....|+++
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHH
Confidence 5568889999999887777654
No 210
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=95.28 E-value=0.19 Score=36.41 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=40.8
Q ss_pred HHHHhcCCC--EEEEEe--CCCh---hHHHHHHHHHHcC--CCCeEEEecccCCCcHHHHHHHHHHhCCC--cccEE--E
Q 030613 75 VKKTVSENP--VVVYSK--TWCS---YSSEVKLLFKRLG--VEPLVIELDEMGPQGPQLQKLLERLTGQH--TVPNV--F 141 (174)
Q Consensus 75 l~~~i~~~~--Vviy~~--~~Cp---~C~~ak~~L~~~~--v~~~~vdid~~~~~~~~~~~~l~~~~g~~--tvP~I--f 141 (174)
+.+.++.++ +|.|.. |||. +|++...-+.... +..-.||++.. ++.....|.+..|.. .+|+| |
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~---~~~~~~~L~~~y~I~~~gyPTl~lF 87 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDY---GEKLNMELGERYKLDKESYPVIYLF 87 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccc---cchhhHHHHHHhCCCcCCCCEEEEE
Confidence 445566666 556888 8898 8888876665543 33444555432 222223455555888 89966 4
Q ss_pred ECCe
Q 030613 142 IGGK 145 (174)
Q Consensus 142 I~G~ 145 (174)
.+|+
T Consensus 88 ~~g~ 91 (116)
T cd03007 88 HGGD 91 (116)
T ss_pred eCCC
Confidence 5663
No 211
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=95.22 E-value=0.091 Score=43.32 Aligned_cols=69 Identities=14% Similarity=0.255 Sum_probs=52.0
Q ss_pred HHHHhcCCCEEEEEe---CC----ChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEE
Q 030613 75 VKKTVSENPVVVYSK---TW----CSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHI 147 (174)
Q Consensus 75 l~~~i~~~~Vviy~~---~~----Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~i 147 (174)
.++-.+...|-+|.- .. .|||-++.-+|+..+++|+.++-.. ...+...++|-|-+||++|
T Consensus 37 hk~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~------------~~rSr~G~lPFIELNGe~i 104 (281)
T KOG4244|consen 37 HKTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL------------KRRSRNGTLPFIELNGEHI 104 (281)
T ss_pred hhhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc------------eeeccCCCcceEEeCCeec
Confidence 334455555666654 23 4899999999999999999886653 2344677899999999999
Q ss_pred ecchHHHH
Q 030613 148 GGCTDTVK 155 (174)
Q Consensus 148 GG~del~~ 155 (174)
-+.+.+..
T Consensus 105 aDS~~I~~ 112 (281)
T KOG4244|consen 105 ADSDLIED 112 (281)
T ss_pred cccHHHHH
Confidence 99886543
No 212
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.047 Score=39.84 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=26.5
Q ss_pred CchhHHHHHHHHhcCCCEEEEEe---------CCChhHHHHHHHHHH
Q 030613 67 YGSRLEESVKKTVSENPVVVYSK---------TWCSYSSEVKLLFKR 104 (174)
Q Consensus 67 ~~~~~~~~l~~~i~~~~Vviy~~---------~~Cp~C~~ak~~L~~ 104 (174)
.-++.++.++..-+...|.+|.. +|||+|.+|...+.+
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~ 57 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINE 57 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHH
Confidence 34566677777656666655432 799999999888765
No 213
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.02 E-value=0.049 Score=39.18 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=17.3
Q ss_pred CEEEEEeCCChhHHHHHHHHHHc
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRL 105 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~ 105 (174)
-|+.|+.+|||+|.+....|+++
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 36668889999999876666553
No 214
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.00 E-value=0.06 Score=36.44 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=27.7
Q ss_pred EEEEEeCCChhHHHHHHHHHH----cC--CCCeEEEecccCCCcHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKR----LG--VEPLVIELDEMGPQGPQLQKLLER 130 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~----~~--v~~~~vdid~~~~~~~~~~~~l~~ 130 (174)
++.|+.+||+.|.+....|.+ ++ -.++.+-|..+ .+.++.++.+++
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-~~~~~~~~~~~~ 56 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-EDEEEWKKFLKK 56 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-SSHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-CCHHHHHHHHHh
Confidence 667899999999988777765 33 44555555443 233455555544
No 215
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=94.96 E-value=0.31 Score=32.62 Aligned_cols=70 Identities=10% Similarity=0.097 Sum_probs=45.4
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHH--HHHHHHH----hCCCcccEEEECCeEEecchHHHHHH
Q 030613 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQL--QKLLERL----TGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 86 iy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~--~~~l~~~----~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+|....-+.|.+++-+|...|++|+.+.++.. .++.. .+..... .-..+||++..||..+.-..-+..+.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~--~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELG--DAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccC--CccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 44444557889999999999999999888753 11111 1211111 14558999999988776665555443
No 216
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.85 E-value=0.037 Score=49.88 Aligned_cols=22 Identities=9% Similarity=0.307 Sum_probs=18.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHc
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRL 105 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~ 105 (174)
|+-|+.+|||+|++....|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 5568999999999988888764
No 217
>PTZ00102 disulphide isomerase; Provisional
Probab=94.79 E-value=0.016 Score=50.75 Aligned_cols=53 Identities=11% Similarity=0.323 Sum_probs=31.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC------CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE------PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~------~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
++.|+.+||++|+.....|.+.... .....+|.. ... ...+..+.+.+|++++
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~--~~~----~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGT--ANE----TPLEEFSWSAFPTILF 437 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECC--CCc----cchhcCCCcccCeEEE
Confidence 5668889999999999888764322 223334331 111 1222336788997754
No 218
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.18 Score=38.62 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCC--EEEEEeCCChhHHHHHHHHH
Q 030613 71 LEESVKKTVSENP--VVVYSKTWCSYSSEVKLLFK 103 (174)
Q Consensus 71 ~~~~l~~~i~~~~--Vviy~~~~Cp~C~~ak~~L~ 103 (174)
+.+..+.+....+ ++||..++|+||.+.++-+.
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~ 65 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLK 65 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhc
Confidence 3455555555554 78899999999998776554
No 219
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.44 E-value=0.064 Score=45.28 Aligned_cols=61 Identities=16% Similarity=0.439 Sum_probs=41.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeE----EEecccCCCcHHHHHHHHHHhCCCcccEEE-ECCeEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLV----IELDEMGPQGPQLQKLLERLTGQHTVPNVF-IGGKHI 147 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~----vdid~~~~~~~~~~~~l~~~~g~~tvP~If-I~G~~i 147 (174)
.|=|..|||.+|++...+.++.|.+... +.|.+. +.........+ .|...+|+|. ..|.+.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKl--DaT~f~aiAne-fgiqGYPTIk~~kgd~a 112 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKL--DATRFPAIANE-FGIQGYPTIKFFKGDHA 112 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeeccc--ccccchhhHhh-hccCCCceEEEecCCee
Confidence 5668889999999999999998876543 445554 33333443333 4888999774 455444
No 220
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.24 E-value=0.071 Score=38.64 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=28.2
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEe
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdi 114 (174)
..+++|++|.|+-|+-+-++|+++.-+|+.+.|
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 358899999999999999999998888876544
No 221
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.12 Score=41.47 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=47.8
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCC--eEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEec----chHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEP--LVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGG----CTDTVK 155 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~~--~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG----~del~~ 155 (174)
..|.||+..+|..|-..-+.|+++|.-- ++++-... ....++ .+.-++|-||+||+.+-+ .+++..
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p------~f~~~~--~~V~SvP~Vf~DGel~~~dpVdp~~ies 82 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELP------PFLAFE--KGVISVPSVFIDGELVYADPVDPEEIES 82 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCC------hHHHhh--cceeecceEEEcCeEEEcCCCCHHHHHH
Confidence 4588999999999999999999988753 34443321 112222 268899999999998743 455555
Q ss_pred HH
Q 030613 156 LY 157 (174)
Q Consensus 156 l~ 157 (174)
+.
T Consensus 83 ~~ 84 (265)
T COG5494 83 IL 84 (265)
T ss_pred HH
Confidence 54
No 222
>PRK10542 glutathionine S-transferase; Provisional
Probab=94.14 E-value=0.2 Score=38.54 Aligned_cols=70 Identities=10% Similarity=0.187 Sum_probs=47.8
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcH-HHHHHHHHHhCCCcccEEEE-CCeEEecchHHHHHH
Q 030613 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGP-QLQKLLERLTGQHTVPNVFI-GGKHIGGCTDTVKLY 157 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~-~~~~~l~~~~g~~tvP~IfI-~G~~iGG~del~~l~ 157 (174)
.+|+.+ .+.+.++.-+|+++|++|+.+.|+.. ..+ ...+.+.++.....||++.+ ||..|-....+.++.
T Consensus 2 ~l~~~~-~s~~~~~~~~L~~~gi~~e~~~v~~~--~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 2 KLFYKP-GACSLASHITLRESGLDFTLVSVDLA--KKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred ceeecc-cHHHHHHHHHHHHcCCCceEEEeecc--cccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHH
Confidence 466654 34577888899999999998887753 111 12244566767788999987 677777666666544
No 223
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.88 E-value=0.1 Score=42.62 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.3
Q ss_pred CEEEEEeCCChhHHHHHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
.|++|+.+.||||++..+-+..
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 4889999999999998776654
No 224
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.13 Score=40.29 Aligned_cols=73 Identities=12% Similarity=0.270 Sum_probs=45.5
Q ss_pred CEEEE--EeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHh
Q 030613 83 PVVVY--SKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYR 158 (174)
Q Consensus 83 ~Vviy--~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~ 158 (174)
+-++| +.+.|.+-.++ .|.-+|++|+++.|+-.. ...+....+++...-.+||.+.|||..+-..--+.++.+
T Consensus 5 KpiLYSYWrSSCswRVRi--ALaLK~iDYey~PvnLlk-~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLe 79 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRI--ALALKGIDYEYKPVNLLK-EEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLE 79 (217)
T ss_pred cchhhhhhcccchHHHHH--HHHHcCCCcceeehhhhc-chhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHH
Confidence 34454 55778775555 455555566555554431 224444567777667789999999998877655555543
No 225
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.64 E-value=0.14 Score=37.30 Aligned_cols=35 Identities=14% Similarity=0.536 Sum_probs=20.2
Q ss_pred hHHHHHHHHhcC-CCE-EEEEe-------CCChhHHHHHHHHHH
Q 030613 70 RLEESVKKTVSE-NPV-VVYSK-------TWCSYSSEVKLLFKR 104 (174)
Q Consensus 70 ~~~~~l~~~i~~-~~V-viy~~-------~~Cp~C~~ak~~L~~ 104 (174)
+..+.+++.... .++ ++|+. +|||+|.+|..++++
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~ 50 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEK 50 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHH
Confidence 344555554433 333 34432 799999999877765
No 226
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=93.61 E-value=0.34 Score=35.34 Aligned_cols=43 Identities=23% Similarity=0.562 Sum_probs=25.7
Q ss_pred EEEEEeC-CChhHHHHHHHHHHc-------CCCCeEEEecccCCCcHHHHHHHHH
Q 030613 84 VVVYSKT-WCSYSSEVKLLFKRL-------GVEPLVIELDEMGPQGPQLQKLLER 130 (174)
Q Consensus 84 Vviy~~~-~Cp~C~~ak~~L~~~-------~v~~~~vdid~~~~~~~~~~~~l~~ 130 (174)
|+.|+.+ |||+|......|.++ ++.+..+..+. +...++.+++
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~----~~~~~~~~~~ 82 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD----DPPVREFLKK 82 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS----SHHHHHHHHH
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC----CHHHHHHHHh
Confidence 6667778 999999776555543 34444444443 3345555554
No 227
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.45 E-value=0.16 Score=46.02 Aligned_cols=89 Identities=21% Similarity=0.361 Sum_probs=54.2
Q ss_pred HHHHHhcCCC---EEE-EEeCCChhHHHHHHHHHH--------cCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEE
Q 030613 74 SVKKTVSENP---VVV-YSKTWCSYSSEVKLLFKR--------LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (174)
Q Consensus 74 ~l~~~i~~~~---Vvi-y~~~~Cp~C~~ak~~L~~--------~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If 141 (174)
+++++..+++ |.+ |+.+||--|+.-+++.-. .++-.-..|+.. ++++.++.|+++ |.-.+|.+.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~---~~p~~~~lLk~~-~~~G~P~~~ 539 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA---NDPAITALLKRL-GVFGVPTYL 539 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC---CCHHHHHHHHHc-CCCCCCEEE
Confidence 4555444443 444 899999999988776642 122223345544 678889999887 899999655
Q ss_pred E-C--CeEEecchHHHHHHhhCchHHHHHhc
Q 030613 142 I-G--GKHIGGCTDTVKLYRKGELEPLLSEA 169 (174)
Q Consensus 142 I-~--G~~iGG~del~~l~~~g~L~~~L~~~ 169 (174)
+ + |+..-. +-...+.+.+.++|++.
T Consensus 540 ff~~~g~e~~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 540 FFGPQGSEPEI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred EECCCCCcCcC---CcceecHHHHHHHHHHh
Confidence 4 3 332222 22333556666666554
No 228
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.25 E-value=0.18 Score=49.29 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=17.6
Q ss_pred EEEEEeCCChhHHHHHHHHHHc
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRL 105 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~ 105 (174)
|+-|+.+|||.|+.....|+++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHH
Confidence 4458999999999877777654
No 229
>PTZ00057 glutathione s-transferase; Provisional
Probab=93.05 E-value=0.69 Score=36.02 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=50.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHH--HHHH--HHhCCCcccEEEECCeEEecchHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQ--KLLE--RLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~--~~l~--~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
++++|+.+..+.|..++-+|+..|++|+.+.++. ..++.. +.++ ..+....+|.+.+||..+....-+..+
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~---~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE---NGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc---cchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 4789988889999999999999999999887653 111211 1111 234667899999999888776665554
No 230
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=92.95 E-value=0.39 Score=35.20 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCCeEEEecccCC---CcHHHHHHHHHHhCCCcccEEEECCeEE--ecchHH
Q 030613 97 EVKLLFKRLGVEPLVIELDEMGP---QGPQLQKLLERLTGQHTVPNVFIGGKHI--GGCTDT 153 (174)
Q Consensus 97 ~ak~~L~~~~v~~~~vdid~~~~---~~~~~~~~l~~~~g~~tvP~IfI~G~~i--GG~del 153 (174)
.+.+.|++.|++...+++...+. +.+.+.+.|+.. |....|.++|||+.+ |.|=..
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~-G~e~LPitlVdGeiv~~G~YPt~ 91 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE-GAEALPITLVDGEIVKTGRYPTN 91 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH--GGG-SEEEETTEEEEESS---H
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc-CcccCCEEEECCEEEEecCCCCH
Confidence 56777888999999999987531 345566777665 899999999999866 666533
No 231
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=92.77 E-value=0.56 Score=31.06 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=16.5
Q ss_pred EEeCCChhHHHHHHHHHHcC
Q 030613 87 YSKTWCSYSSEVKLLFKRLG 106 (174)
Q Consensus 87 y~~~~Cp~C~~ak~~L~~~~ 106 (174)
|+.+|||+|......|.+..
T Consensus 39 f~~~~C~~C~~~~~~l~~~~ 58 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEELA 58 (127)
T ss_pred EEcCcCHHHHhhchhHHHHH
Confidence 36999999999988887653
No 232
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.60 E-value=0.47 Score=31.35 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=43.1
Q ss_pred ChhHHHHHHHHHHcCCC---CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE-CCeEEecchHHHHHH
Q 030613 92 CSYSSEVKLLFKRLGVE---PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI-GGKHIGGCTDTVKLY 157 (174)
Q Consensus 92 Cp~C~~ak~~L~~~~v~---~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI-~G~~iGG~del~~l~ 157 (174)
-|.|-.+..+|+-.+.+ ++.+..... ..+....+|.+.. +|+.+.||.++.++.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n~------------~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNNP------------WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCCC------------CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 58999999999999998 666655431 2335668999999 999999999988764
No 233
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.18 Score=43.37 Aligned_cols=60 Identities=13% Similarity=0.294 Sum_probs=36.9
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHHcCCCCe-EEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPL-VIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 80 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~-~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
...-++.|..+||++|.+....+.+..-.+. .+.+... +..+.++. ...++...+|++.+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~v--d~~~~~~~-~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAV--DCDEHKDL-CEKYGIQGFPTLKV 107 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEe--CchhhHHH-HHhcCCccCcEEEE
Confidence 3445888999999999988777765422221 2222222 22344444 44459999997765
No 234
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.38 E-value=0.27 Score=34.30 Aligned_cols=69 Identities=13% Similarity=0.230 Sum_probs=40.9
Q ss_pred cCCCEEEEEeCC-ChhHH------HHHHHHHH--------cCCCCeEEEecccCCCcHHHHHHHHHH-hCCCcccEEEEC
Q 030613 80 SENPVVVYSKTW-CSYSS------EVKLLFKR--------LGVEPLVIELDEMGPQGPQLQKLLERL-TGQHTVPNVFIG 143 (174)
Q Consensus 80 ~~~~Vviy~~~~-Cp~C~------~ak~~L~~--------~~v~~~~vdid~~~~~~~~~~~~l~~~-~g~~tvP~IfI~ 143 (174)
+..+++||+... |..|. ...++|+. ....|+++||... +......++..++ ....-+|.|.++
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~-~~e~~~~~~aekI~~dey~YPlivve 81 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNP-PLEDHDLQFAEKIEQDEYFYPLIVVE 81 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCC-ccHHHHHHHHHHHhcccccceEEEEc
Confidence 345688898854 76664 55555543 1233567777532 2333344444443 234569999999
Q ss_pred CeEEec
Q 030613 144 GKHIGG 149 (174)
Q Consensus 144 G~~iGG 149 (174)
|+.|+.
T Consensus 82 deiVae 87 (106)
T COG4837 82 DEIVAE 87 (106)
T ss_pred ceEeec
Confidence 999964
No 235
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.86 E-value=0.11 Score=37.84 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=18.9
Q ss_pred CCEEEEEeCCChhHHHHHHHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
..|++|+.++||+|.+....+.+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHH
Confidence 45888999999999988777665
No 236
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=91.57 E-value=0.38 Score=40.71 Aligned_cols=70 Identities=16% Similarity=0.348 Sum_probs=40.9
Q ss_pred HHHHhcCCCEE--EEEeCCChhHHHHHHHHHHcCCC----Ce--EEEecccCCCcHHHHHHHHHHhCCCcccE--EEECC
Q 030613 75 VKKTVSENPVV--VYSKTWCSYSSEVKLLFKRLGVE----PL--VIELDEMGPQGPQLQKLLERLTGQHTVPN--VFIGG 144 (174)
Q Consensus 75 l~~~i~~~~Vv--iy~~~~Cp~C~~ak~~L~~~~v~----~~--~vdid~~~~~~~~~~~~l~~~~g~~tvP~--IfI~G 144 (174)
+..++..+.+| -|..+||++++..+.+|.+.... |. .+-+..+ +. ..+..+...+....+|+ ||.||
T Consensus 6 ~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~V--Dc-d~e~~ia~ky~I~KyPTlKvfrnG 82 (375)
T KOG0912|consen 6 IDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKV--DC-DKEDDIADKYHINKYPTLKVFRNG 82 (375)
T ss_pred HHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEc--cc-chhhHHhhhhccccCceeeeeecc
Confidence 44556666655 48889999999999999875322 21 1112221 11 11334445456677784 56788
Q ss_pred eEE
Q 030613 145 KHI 147 (174)
Q Consensus 145 ~~i 147 (174)
..+
T Consensus 83 ~~~ 85 (375)
T KOG0912|consen 83 EMM 85 (375)
T ss_pred chh
Confidence 643
No 237
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=91.48 E-value=1 Score=33.96 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=15.4
Q ss_pred CEEEEEeCCChhHHHHHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
.|+.|..+|||.|.+...-|.+
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~ 49 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNR 49 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 3666788999999865444444
No 238
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=91.41 E-value=0.13 Score=44.54 Aligned_cols=51 Identities=12% Similarity=0.388 Sum_probs=31.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHcC----C---CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLG----V---EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~----v---~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
++.|..+||++|+.....+.+.. - .+....+|.. ..+. .. .+...+|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~---~n~~----~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT---ANDV----PP-FEVEGFPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC---CCcc----CC-CCccccCEEEE
Confidence 55688999999998887776632 1 2334444432 1111 12 36788997765
No 239
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=90.85 E-value=0.032 Score=46.13 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=48.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCC---CeEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECCeEEecchHHHHH--
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVE---PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGGKHIGGCTDTVKL-- 156 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~---~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G~~iGG~del~~l-- 156 (174)
||-+..++++-|..+-..|..+... ..++.|... ... +........+|+|+ .+|+.++.+-.+.+.
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~--~~~-----~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g 222 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRAS--KCP-----ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLG 222 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEEC--GCC-----TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehh--ccC-----cccCCcccCCCEEEEEECCEEEEeEEehHHhcC
Confidence 3346779999999888888765332 345554431 000 11222456788665 599888766443322
Q ss_pred --HhhCchHHHHHhccccc
Q 030613 157 --YRKGELEPLLSEAKSAE 173 (174)
Q Consensus 157 --~~~g~L~~~L~~~g~~~ 173 (174)
.....|+.+|.+.|++-
T Consensus 223 ~df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 223 DDFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp TT--HHHHHHHHHTTTSSS
T ss_pred CCCCHHHHHHHHHHcCCCC
Confidence 23347999999999984
No 240
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=90.75 E-value=4.5 Score=28.82 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=40.6
Q ss_pred cCCCEEEEEeCC-ChhHHHHHHHHHHc----C--CCCeEEEecccCCCcHHHHHHHHHHhCCC-cccEEEE--CCeEEe
Q 030613 80 SENPVVVYSKTW-CSYSSEVKLLFKRL----G--VEPLVIELDEMGPQGPQLQKLLERLTGQH-TVPNVFI--GGKHIG 148 (174)
Q Consensus 80 ~~~~Vviy~~~~-Cp~C~~ak~~L~~~----~--v~~~~vdid~~~~~~~~~~~~l~~~~g~~-tvP~IfI--~G~~iG 148 (174)
...+++||=-++ ||-+..|.+-|++. . +++-+++|-. ...+-..+.+..|.. .-||+++ ||+.+-
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~----~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~ 92 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIE----YRPVSNAIAEDFGVKHESPQVILIKNGKVVW 92 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGG----GHHHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEe----CchhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence 356688887755 99999988777652 2 5556666654 466777777777765 4898876 888774
No 241
>PTZ00056 glutathione peroxidase; Provisional
Probab=90.75 E-value=0.86 Score=35.81 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=15.1
Q ss_pred EEEEEeCCChhHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
|+.|+.+|||+|.+-...|.+
T Consensus 43 lv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 556888999999865444444
No 242
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=90.59 E-value=0.96 Score=35.40 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=26.7
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHH---cCCCC------eEEEecc
Q 030613 80 SENPVVVYSKTWCSYSSEVKLLFKR---LGVEP------LVIELDE 116 (174)
Q Consensus 80 ~~~~Vviy~~~~Cp~C~~ak~~L~~---~~v~~------~~vdid~ 116 (174)
.+..++-|+.+||+.|+.-..+|.+ .|++. ..|++|.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd 104 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADD 104 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECcc
Confidence 3445777999999999987776655 46666 5667664
No 243
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=90.52 E-value=1.1 Score=32.27 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=15.9
Q ss_pred CEEEEEeCCChh-HHHHHHHHHH
Q 030613 83 PVVVYSKTWCSY-SSEVKLLFKR 104 (174)
Q Consensus 83 ~Vviy~~~~Cp~-C~~ak~~L~~ 104 (174)
-|+.|+.+||++ |.+....|.+
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHHH
Confidence 466788899998 9865555544
No 244
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=90.22 E-value=1.7 Score=30.36 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=30.0
Q ss_pred EEEEEeC-CChhHHHHHHHHHHc----CC-CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 84 VVVYSKT-WCSYSSEVKLLFKRL----GV-EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 84 Vviy~~~-~Cp~C~~ak~~L~~~----~v-~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
|+.|+.. |||+|.....-|.+. .. .+..+-|... ...+..+.++.. + ..+|.+.-
T Consensus 29 vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--~~~~~~~~~~~~-~-~~~~~~~D 89 (124)
T PF00578_consen 29 VLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--DPEEIKQFLEEY-G-LPFPVLSD 89 (124)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--SHHHHHHHHHHH-T-CSSEEEEE
T ss_pred EEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--cccchhhhhhhh-c-cccccccC
Confidence 5556666 999997665555442 21 2344444442 334566666555 2 45565554
No 245
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.74 E-value=0.73 Score=40.97 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHHHHc--CC-CCeEEEecccCCCcHHHHHHHHHHhCC--CcccEEEE-------CCeEEecchHHHHHH
Q 030613 90 TWCSYSSEVKLLFKRL--GV-EPLVIELDEMGPQGPQLQKLLERLTGQ--HTVPNVFI-------GGKHIGGCTDTVKLY 157 (174)
Q Consensus 90 ~~Cp~C~~ak~~L~~~--~v-~~~~vdid~~~~~~~~~~~~l~~~~g~--~tvP~IfI-------~G~~iGG~del~~l~ 157 (174)
..|||=.++.-+-+.+ +. +|.+..|-+.+++-++.-+.+.+..|| ..-|.|.- .|..+||++|+.++.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 5799999998877765 33 377777877532222222223333455 45898874 778999999999875
Q ss_pred h
Q 030613 158 R 158 (174)
Q Consensus 158 ~ 158 (174)
+
T Consensus 82 ~ 82 (452)
T cd05295 82 E 82 (452)
T ss_pred H
Confidence 4
No 246
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=89.30 E-value=0.63 Score=33.83 Aligned_cols=24 Identities=8% Similarity=-0.014 Sum_probs=15.1
Q ss_pred CCCEE-EEEeCC-ChhHHHHHHHHHH
Q 030613 81 ENPVV-VYSKTW-CSYSSEVKLLFKR 104 (174)
Q Consensus 81 ~~~Vv-iy~~~~-Cp~C~~ak~~L~~ 104 (174)
..+++ .|+..| ||+|.+....|.+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~ 51 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNK 51 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHH
Confidence 33444 455556 7999977666654
No 247
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=89.21 E-value=1.5 Score=35.71 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=16.1
Q ss_pred CCEEEEEeCCChhHHHHHHHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
.-|+.|+.+|||.|..-...|.+
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~ 123 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSH 123 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHH
Confidence 34667899999999865444443
No 248
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=89.18 E-value=0.92 Score=33.66 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=15.0
Q ss_pred EEEEEeCCChhHHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
|+.|+.+||| |.+-...|.+
T Consensus 26 vl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHH
Confidence 5558889999 9876666655
No 249
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=89.10 E-value=0.26 Score=40.79 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=62.3
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhh
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRK 159 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~ 159 (174)
.++|-.++.-..++++-.+.++|++|+.++|+-. .+++....+-++.....||++.-+...|-.++++.++.+.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~--~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLP--QGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCc--cccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 8899999999999999999999999999999873 5666666666776677899887777788889999888766
No 250
>PLN02412 probable glutathione peroxidase
Probab=88.96 E-value=2 Score=32.56 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=13.6
Q ss_pred EEEEEeCCChhHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFK 103 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~ 103 (174)
|+.|+.+|||.|.+....|.
T Consensus 33 lv~f~a~~C~~c~~e~~~l~ 52 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELN 52 (167)
T ss_pred EEEEeCCCCCChHHHHHHHH
Confidence 44578899999986443343
No 251
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=88.95 E-value=0.96 Score=40.97 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=40.5
Q ss_pred chhHHHHHHHHhcC----CCEEEEEeCCChhHHHHHHHHHHcCC-----CCeEEEecccCCCcHHHHHHHHHHhCCCccc
Q 030613 68 GSRLEESVKKTVSE----NPVVVYSKTWCSYSSEVKLLFKRLGV-----EPLVIELDEMGPQGPQLQKLLERLTGQHTVP 138 (174)
Q Consensus 68 ~~~~~~~l~~~i~~----~~Vviy~~~~Cp~C~~ak~~L~~~~v-----~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP 138 (174)
.++.++.|++.+.. -.+++|..+.|.+|.+++++|++..- +++.+|... . .+ +.+.++...+|
T Consensus 350 ~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~----~---~~-~~~~~~v~~~P 421 (555)
T TIGR03143 350 DDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGE----E---PE-SETLPKITKLP 421 (555)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEecccc----c---hh-hHhhcCCCcCC
Confidence 34455555555433 24667888899999999999998532 223333222 1 22 22334777889
Q ss_pred EEEE
Q 030613 139 NVFI 142 (174)
Q Consensus 139 ~IfI 142 (174)
.+.|
T Consensus 422 ~~~i 425 (555)
T TIGR03143 422 TVAL 425 (555)
T ss_pred EEEE
Confidence 8876
No 252
>PTZ00256 glutathione peroxidase; Provisional
Probab=88.57 E-value=1.5 Score=33.80 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=13.8
Q ss_pred EEEEeCCChhHHHHHHHHH
Q 030613 85 VVYSKTWCSYSSEVKLLFK 103 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L~ 103 (174)
++|+.+|||+|.+-...|.
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 3568999999997554444
No 253
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=88.47 E-value=0.64 Score=33.66 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=20.9
Q ss_pred hCCCcccEEEECCeEEecchHHHHH
Q 030613 132 TGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 132 ~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
.|...+|+++|+|+.+-|.++...+
T Consensus 125 ~gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 125 LGITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred cCCCcCCeEEECCEEecCCCCHHHH
Confidence 4889999999999999998765543
No 254
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=88.36 E-value=2.4 Score=30.41 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=22.5
Q ss_pred EEEEE-eCCChhHHHHHHHHHHc----C-CCCeEEEecccCCCcHHHHHHHHHH
Q 030613 84 VVVYS-KTWCSYSSEVKLLFKRL----G-VEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 84 Vviy~-~~~Cp~C~~ak~~L~~~----~-v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
|+.|+ ..|||.|.....-|.+. . -.+..+-|... ....+++.+++.
T Consensus 27 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--~~~~~~~~~~~~ 78 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--SVESHAKFAEKY 78 (140)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--CHHHHHHHHHHh
Confidence 34444 47899997644443321 1 12344544432 234455555543
No 255
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=87.96 E-value=1.2 Score=32.21 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=15.8
Q ss_pred CEEEEE-eCCChhHHHHHHHHHHc
Q 030613 83 PVVVYS-KTWCSYSSEVKLLFKRL 105 (174)
Q Consensus 83 ~Vviy~-~~~Cp~C~~ak~~L~~~ 105 (174)
.|++|. ..|||.|.+-...|.++
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~ 49 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKL 49 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHH
Confidence 345554 68999999766666553
No 256
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=87.94 E-value=1.7 Score=31.09 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=26.4
Q ss_pred EEEEE-eCCChhHHHHHHHHHHcC-----CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEE
Q 030613 84 VVVYS-KTWCSYSSEVKLLFKRLG-----VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV 140 (174)
Q Consensus 84 Vviy~-~~~Cp~C~~ak~~L~~~~-----v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I 140 (174)
|++|+ ..|||.|.....-|.++- -....+-|... +....++..+++ +...+|.+
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--~~~~~~~~~~~~-~~~~~~~l 85 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--SPFSHKAWAEKE-GGLNFPLL 85 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHhcc-cCCCceEE
Confidence 44445 579999987655444321 12344444432 233344444433 24456644
No 257
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=87.77 E-value=3 Score=30.26 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=13.9
Q ss_pred EEEEE-eCCChhHHHHHHHHHH
Q 030613 84 VVVYS-KTWCSYSSEVKLLFKR 104 (174)
Q Consensus 84 Vviy~-~~~Cp~C~~ak~~L~~ 104 (174)
|++|. .+|||.|.+...-|.+
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHH
Confidence 44454 6899999866555544
No 258
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=87.30 E-value=1.1 Score=34.15 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCCeEEEecccCCCcHHHHHHHH------HHhCCCcccEEEECCeEEecchHHHHH
Q 030613 97 EVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLE------RLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 97 ~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~------~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
.+.+++.+.|++...+.-.. ++.+.++.++ ...|..++|.++|||+.+-|.|.+..+
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~---~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAA---DDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHc---CCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHH
Confidence 46778888888653221111 1222222221 124899999999999999999877543
No 259
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=87.11 E-value=1.3 Score=32.52 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=17.4
Q ss_pred hCCCcccEEEECCeEEecchHH
Q 030613 132 TGQHTVPNVFIGGKHIGGCTDT 153 (174)
Q Consensus 132 ~g~~tvP~IfI~G~~iGG~del 153 (174)
.|...+|+++|||+.+.|.-++
T Consensus 132 ~~i~~tPt~~inG~~~~~~~~~ 153 (162)
T PF13462_consen 132 LGITGTPTFFINGKYVVGPYTI 153 (162)
T ss_dssp HT-SSSSEEEETTCEEETTTSH
T ss_pred cCCccccEEEECCEEeCCCCCH
Confidence 5788999999999999875443
No 260
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.10 E-value=3.9 Score=38.02 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=44.0
Q ss_pred HHHHHHHhcCC-CEEE-EEeCCChhHHHH-HHHHHH------cCCCCeEEEecccC-CCcHH-HHHHHHHHhCCCccc-E
Q 030613 72 EESVKKTVSEN-PVVV-YSKTWCSYSSEV-KLLFKR------LGVEPLVIELDEMG-PQGPQ-LQKLLERLTGQHTVP-N 139 (174)
Q Consensus 72 ~~~l~~~i~~~-~Vvi-y~~~~Cp~C~~a-k~~L~~------~~v~~~~vdid~~~-~~~~~-~~~~l~~~~g~~tvP-~ 139 (174)
.+.+.++.+.. +|.+ -+.++|-+|+-. ++-+.+ ++..|..|.||... ++-++ ..+..+.++|+..+| +
T Consensus 33 ~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt 112 (667)
T COG1331 33 EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT 112 (667)
T ss_pred HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence 34455554444 4444 445799999733 333322 34446667777631 22222 356667788999999 6
Q ss_pred EEE--CCeEE
Q 030613 140 VFI--GGKHI 147 (174)
Q Consensus 140 IfI--~G~~i 147 (174)
||+ ||+++
T Consensus 113 VfLTPd~kPF 122 (667)
T COG1331 113 VFLTPDGKPF 122 (667)
T ss_pred EEECCCCcee
Confidence 666 77755
No 261
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=87.06 E-value=0.29 Score=43.86 Aligned_cols=26 Identities=15% Similarity=0.508 Sum_probs=21.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCC
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEP 109 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~ 109 (174)
.+-|..|||+||++...++++++..|
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHh
Confidence 55688899999999999998876555
No 262
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=86.91 E-value=0.62 Score=34.94 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=19.1
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHH
Q 030613 81 ENPVVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 81 ~~~Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
...|+.|....||+|.+....+.+
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 445889999999999987766654
No 263
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=86.62 E-value=2 Score=34.64 Aligned_cols=81 Identities=16% Similarity=0.258 Sum_probs=51.8
Q ss_pred EeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCccc--EEEECCeEEecchHHHH----HHhhCc
Q 030613 88 SKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP--NVFIGGKHIGGCTDTVK----LYRKGE 161 (174)
Q Consensus 88 ~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP--~IfI~G~~iGG~del~~----l~~~g~ 161 (174)
.-++-+-|...-..+.=+..+|..+..-+..+.. -.+-.+. ....+| +||-||+.||.|-.+.+ -+-.|+
T Consensus 167 YEdgi~gcealn~~~~cLAAeyP~vKFckikss~---~gas~~F-~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~d 242 (273)
T KOG3171|consen 167 YEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN---TGASDRF-SLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGD 242 (273)
T ss_pred ecCCCchHHHHhhhHHHhhccCCceeEEEeeecc---ccchhhh-cccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhh
Confidence 3377888888888888777777655443321111 1111122 344577 45569999999966543 345689
Q ss_pred hHHHHHhcccc
Q 030613 162 LEPLLSEAKSA 172 (174)
Q Consensus 162 L~~~L~~~g~~ 172 (174)
|..+|++-|++
T Consensus 243 le~FL~e~gll 253 (273)
T KOG3171|consen 243 LESFLNEYGLL 253 (273)
T ss_pred HHHHHHHcCCC
Confidence 99999998875
No 264
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.53 E-value=4.2 Score=32.41 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=52.5
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
...++.-+..+.|+-++.+|.-.+++|+.+.+... +. -..++..+....+|++.|||..|...-.+..+.
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~--~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITME--DA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccc--cc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 34566667889999999999999999999999863 21 112333356778999999999988776665543
No 265
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=86.10 E-value=1.2 Score=36.18 Aligned_cols=62 Identities=19% Similarity=0.401 Sum_probs=39.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEE----Eec--cc--------CCCcHHHHHHHHHHhCCCc--ccEEEECCe
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVI----ELD--EM--------GPQGPQLQKLLERLTGQHT--VPNVFIGGK 145 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~v----did--~~--------~~~~~~~~~~l~~~~g~~t--vP~IfI~G~ 145 (174)
|.+|+..+|.-|--+-+.|.++.-+..++ .|| .. ..+..+.|..+.+..+.++ .||++|||+
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 77899999999999999998865443322 111 00 0233444544545445554 789999996
No 266
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=85.45 E-value=0.94 Score=33.30 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=16.2
Q ss_pred CCEEEEEeCCChhHHHHHHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFK 103 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~ 103 (174)
..|++|....||+|.+....+.
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHHh
Confidence 3488999999999987755443
No 267
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=85.05 E-value=0.94 Score=33.61 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=15.0
Q ss_pred EEEEEeCCChhHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFK 103 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~ 103 (174)
|+.|+.+|||+|.+...-|.
T Consensus 26 vv~~~as~C~~c~~~~~~l~ 45 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQ 45 (153)
T ss_pred EEEEeCCCCCchhhhHHHHH
Confidence 57789999999986554443
No 268
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=83.25 E-value=5.6 Score=29.22 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=11.1
Q ss_pred cCCCEEEEEe--CCChhHHHHH
Q 030613 80 SENPVVVYSK--TWCSYSSEVK 99 (174)
Q Consensus 80 ~~~~Vviy~~--~~Cp~C~~ak 99 (174)
+...++|+.. .|||.|....
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~ 50 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQA 50 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHH
Confidence 3444554443 4788896543
No 269
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=83.21 E-value=4.3 Score=30.67 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=15.0
Q ss_pred CCEEEEE--eCCChhHHHHHHHHHH
Q 030613 82 NPVVVYS--KTWCSYSSEVKLLFKR 104 (174)
Q Consensus 82 ~~Vviy~--~~~Cp~C~~ak~~L~~ 104 (174)
..++||. ..|||.|......|.+
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHH
Confidence 3455444 5899999976655544
No 270
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=83.06 E-value=2.3 Score=33.70 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCEEE-EEeCC---ChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEE--EECCe
Q 030613 72 EESVKKTVSENPVVV-YSKTW---CSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNV--FIGGK 145 (174)
Q Consensus 72 ~~~l~~~i~~~~Vvi-y~~~~---Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I--fI~G~ 145 (174)
++++....++.+||+ |..+. |..-.+=...|....++-.++.|+.. ..+ .|....+...+|.| |.||+
T Consensus 75 kdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae--~~P----Flv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 75 KDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAE--KAP----FLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred HHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecc--cCc----eeeeeeeeeEeeeEEEEEcCE
Confidence 456666667777665 77776 55555666677777777666666542 222 23333377889955 66886
Q ss_pred ---EEecchHHHH--HHhhCchHHHHHhcccc
Q 030613 146 ---HIGGCTDTVK--LYRKGELEPLLSEAKSA 172 (174)
Q Consensus 146 ---~iGG~del~~--l~~~g~L~~~L~~~g~~ 172 (174)
+|.||.+|=. -.....|+..|...|++
T Consensus 149 ~~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 149 TVDYVVGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred EEEEEeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 5677776532 11334566666666654
No 271
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=83.05 E-value=2.8 Score=29.40 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=42.1
Q ss_pred EEEeCCChhHHHHHHHHHHcCC--CCeEEEecccCCCcHHHHHHHHHHh----CCCcccEEEECCe-EEecchHHHHHHh
Q 030613 86 VYSKTWCSYSSEVKLLFKRLGV--EPLVIELDEMGPQGPQLQKLLERLT----GQHTVPNVFIGGK-HIGGCTDTVKLYR 158 (174)
Q Consensus 86 iy~~~~Cp~C~~ak~~L~~~~v--~~~~vdid~~~~~~~~~~~~l~~~~----g~~tvP~IfI~G~-~iGG~del~~l~~ 158 (174)
||....||+|....+++.+... .++.+++... .+ .+.+.... ...+.-.+.-+|+ ...|.+-+.++..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~--~~---~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSE--PD---QALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCCh--hh---hhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHH
Confidence 4566789999999999999864 4566777321 11 22121110 1123334434776 8999998887765
Q ss_pred h
Q 030613 159 K 159 (174)
Q Consensus 159 ~ 159 (174)
.
T Consensus 76 ~ 76 (114)
T PF04134_consen 76 R 76 (114)
T ss_pred H
Confidence 4
No 272
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=82.84 E-value=2.2 Score=32.31 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=14.0
Q ss_pred EEEEEeCC-ChhHHHHHHHHHH
Q 030613 84 VVVYSKTW-CSYSSEVKLLFKR 104 (174)
Q Consensus 84 Vviy~~~~-Cp~C~~ak~~L~~ 104 (174)
|+.|+..| ||.|.+-..-|.+
T Consensus 48 vl~f~~s~~cp~C~~e~~~l~~ 69 (167)
T PRK00522 48 VLNIFPSIDTGVCATSVRKFNQ 69 (167)
T ss_pred EEEEEcCCCCCccHHHHHHHHH
Confidence 44566667 9999876555544
No 273
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=81.84 E-value=2.2 Score=31.62 Aligned_cols=54 Identities=22% Similarity=0.156 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHHHcCCC-----CeEEEecccCCCcHHHHHHHHHHhCCCcccEE--EECCeEEecc
Q 030613 91 WCSYSSEVKLLFKRLGVE-----PLVIELDEMGPQGPQLQKLLERLTGQHTVPNV--FIGGKHIGGC 150 (174)
Q Consensus 91 ~Cp~C~~ak~~L~~~~v~-----~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~I--fI~G~~iGG~ 150 (174)
.+|.+..+--+|.++.-+ .....||.+ +. ..+...+|..++|++ |-||+.+|-.
T Consensus 47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD--~~----~~LA~~fgV~siPTLl~FkdGk~v~~i 107 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLE--QS----EAIGDRFGVFRFPATLVFTGGNYRGVL 107 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCCceEEEEEECC--CC----HHHHHHcCCccCCEEEEEECCEEEEEE
Confidence 377777766666554322 223333331 11 334555699999965 4599988655
No 274
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=80.96 E-value=12 Score=26.30 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=41.3
Q ss_pred HHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCccc-EEEE--CCeEE
Q 030613 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP-NVFI--GGKHI 147 (174)
Q Consensus 73 ~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP-~IfI--~G~~i 147 (174)
..+.++.+...+.+++-+....-..+++++++++++|..+.+|.. .+ +.+..+...+| .++| +|+.+
T Consensus 45 ~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~-~~~~~~v~~~P~~~~ld~~G~v~ 114 (127)
T cd03010 45 PVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-------GR-VGIDLGVYGVPETFLIDGDGIIR 114 (127)
T ss_pred HHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc-------ch-HHHhcCCCCCCeEEEECCCceEE
Confidence 444444444446555555445556778899999998877767642 12 33435888899 6666 46544
No 275
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=80.93 E-value=4.2 Score=32.21 Aligned_cols=50 Identities=6% Similarity=0.033 Sum_probs=36.0
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHH
Q 030613 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (174)
Q Consensus 80 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~ 130 (174)
....+.+|.+..|+.|......+..-+-++.++-|+.. .++..++.....
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~-~dD~~Ir~WA~~ 157 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQ-GDDERIRQWANR 157 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCC-CCHHHHHHHHHH
Confidence 45569999999999999887777666777777777742 355566665443
No 276
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=79.46 E-value=18 Score=27.03 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=41.9
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHHcCCC--CeEEEecccCCCcHHHHHHHHHHhCCC-ccc--EEEE-CCeEEecchHH
Q 030613 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVE--PLVIELDEMGPQGPQLQKLLERLTGQH-TVP--NVFI-GGKHIGGCTDT 153 (174)
Q Consensus 80 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~--~~~vdid~~~~~~~~~~~~l~~~~g~~-tvP--~IfI-~G~~iGG~del 153 (174)
+....+|+..-.||.|...+++|.++.-. +....+. ++.-+..+... |.. .-+ .+++ +|+..-|.|-+
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q-----~e~g~~~l~~~-~l~~~~~~s~~~~~~g~~~~~sdA~ 79 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQ-----SEPGQALLEAA-GLDPEDVDSVLLVEAGQLLVGSDAA 79 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEecc-----CchhhhHHhhc-CCChhhhheeeEecCCceEeccHHH
Confidence 34456666667899999999999887544 4444443 23334444333 322 212 3333 77777887765
Q ss_pred HHH
Q 030613 154 VKL 156 (174)
Q Consensus 154 ~~l 156 (174)
.+.
T Consensus 80 ~~i 82 (137)
T COG3011 80 IRI 82 (137)
T ss_pred HHH
Confidence 543
No 277
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.45 E-value=2.4 Score=36.45 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=33.7
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHHcCC------CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 80 SENPVVVYSKTWCSYSSEVKLLFKRLGV------EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 80 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~v------~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
+...++.|..|||++|+.....+++... ......++. . ....+....+...+|++.+
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~-----~-~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA-----T-VHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc-----c-hHHHHhhhhcccCCceEEE
Confidence 4445888999999999988666665432 233334432 1 2222334446777776644
No 278
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=78.53 E-value=22 Score=25.45 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhcCCC-EEEEEe-C----CChhHH------HHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCc
Q 030613 69 SRLEESVKKTVSENP-VVVYSK-T----WCSYSS------EVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHT 136 (174)
Q Consensus 69 ~~~~~~l~~~i~~~~-Vviy~~-~----~Cp~C~------~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~t 136 (174)
...+++++.+.+..| +.||-. + ||.+|+ .+.+++++ .|-..-.|.. ..+-.+. ....+..+
T Consensus 4 gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~---~~eg~~l-a~~l~~~~ 76 (116)
T cd02991 4 GTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVA---KPEGYRV-SQALRERT 76 (116)
T ss_pred CcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecC---ChHHHHH-HHHhCCCC
Confidence 355677777777776 455544 3 588886 44555543 3444434432 2333443 33347889
Q ss_pred ccEEEE
Q 030613 137 VPNVFI 142 (174)
Q Consensus 137 vP~IfI 142 (174)
+|.+.+
T Consensus 77 ~P~~~~ 82 (116)
T cd02991 77 YPFLAM 82 (116)
T ss_pred CCEEEE
Confidence 996543
No 279
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=78.50 E-value=1.8 Score=32.75 Aligned_cols=57 Identities=21% Similarity=0.358 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCCeEEEecccCCCcHHHHHHH------HHHhCCCcccEEEECCe-EEecchHHHHH
Q 030613 97 EVKLLFKRLGVEPLVIELDEMGPQGPQLQKLL------ERLTGQHTVPNVFIGGK-HIGGCTDTVKL 156 (174)
Q Consensus 97 ~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l------~~~~g~~tvP~IfI~G~-~iGG~del~~l 156 (174)
.+..++.+.|++...++-.. ++.+.++.+ ....|..++|.++|||+ .+-|.+.+-.+
T Consensus 125 vl~~~~~~~Gld~~~~~~~~---~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 125 VLAEIAEEAGLDPDEFDAAL---DSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHHTT--HHHHHHHH---TSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHh---cchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHH
Confidence 46777788887543321111 122222222 12358999999999999 78888765443
No 280
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=78.24 E-value=3 Score=31.54 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=22.9
Q ss_pred CEEEEEeCCChhHHHHHHHH----HHc-CCCCeEEEec
Q 030613 83 PVVVYSKTWCSYSSEVKLLF----KRL-GVEPLVIELD 115 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L----~~~-~v~~~~vdid 115 (174)
+|++|....||||-.+...| ++. +++.+.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 48899999999997554444 445 6666665554
No 281
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=76.65 E-value=10 Score=28.62 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCccc-EEEE--CCeEE
Q 030613 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP-NVFI--GGKHI 147 (174)
Q Consensus 73 ~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP-~IfI--~G~~i 147 (174)
..++++.+.. +.+++-+....=.+.++++++++++|..+..|.. . + +.+..+...+| +++| +|+.+
T Consensus 83 p~l~~l~~~~-~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~---~-~----~~~~~~v~~~P~~~~id~~G~i~ 151 (173)
T TIGR00385 83 PYLNELAKDG-LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPN---G-K----LGLDLGVYGAPETFLVDGNGVIL 151 (173)
T ss_pred HHHHHHHHcC-CEEEEEECCCChHHHHHHHHHcCCCCceEEECCC---C-c----hHHhcCCeeCCeEEEEcCCceEE
Confidence 4444444433 4444444443445667899999998876666642 1 1 22334778899 5666 47633
No 282
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=75.91 E-value=12 Score=28.90 Aligned_cols=23 Identities=4% Similarity=-0.138 Sum_probs=14.4
Q ss_pred cCCCEEEEE--eCCChhHHHHHHHH
Q 030613 80 SENPVVVYS--KTWCSYSSEVKLLF 102 (174)
Q Consensus 80 ~~~~Vviy~--~~~Cp~C~~ak~~L 102 (174)
+...++||. ..|||.|..-...|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l 54 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDL 54 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHH
Confidence 334455554 68999998654444
No 283
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=75.84 E-value=3.8 Score=32.10 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.1
Q ss_pred hCCCcccEEEECCeEEecchH
Q 030613 132 TGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 132 ~g~~tvP~IfI~G~~iGG~de 152 (174)
.|..++|.++|||+++-+...
T Consensus 163 ~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 163 LQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred cCCCCCCEEEECCEEEEcccc
Confidence 478899999999999766543
No 284
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=75.55 E-value=3.4 Score=30.84 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCCeEEEecccCCCcHHH----HHH--HHHHhCCCcccEEEECCeEEecch
Q 030613 96 SEVKLLFKRLGVEPLVIELDEMGPQGPQL----QKL--LERLTGQHTVPNVFIGGKHIGGCT 151 (174)
Q Consensus 96 ~~ak~~L~~~~v~~~~vdid~~~~~~~~~----~~~--l~~~~g~~tvP~IfI~G~~iGG~d 151 (174)
..+.+++.+.|++.+.++-.. .+.+. ++. +....|...+|.++|||+.+-+-.
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~---~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAY---NSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHH---hCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEChh
Confidence 456677777777543221111 11122 111 112348899999999999775543
No 285
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.48 E-value=6 Score=32.01 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=15.8
Q ss_pred CCEEEEEeCCChhHHHHHHHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
-+|.||+..-||+|---++-|++
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~k 28 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEK 28 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHH
Confidence 34778888999999644444443
No 286
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=74.24 E-value=6.8 Score=30.64 Aligned_cols=21 Identities=5% Similarity=-0.051 Sum_probs=13.2
Q ss_pred CCEEE--EEeCCChhHHHHHHHH
Q 030613 82 NPVVV--YSKTWCSYSSEVKLLF 102 (174)
Q Consensus 82 ~~Vvi--y~~~~Cp~C~~ak~~L 102 (174)
..+++ |...|||.|..-..-|
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l 48 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAF 48 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHH
Confidence 33554 5668899998654433
No 287
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=71.31 E-value=14 Score=30.07 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=46.4
Q ss_pred CCchhHHHHHHHHhcCCCEEEEEeC-----CChhHHHHHHHHHHc------CCCCeEEEecccCCCcHHHHHHHHHHhCC
Q 030613 66 SYGSRLEESVKKTVSENPVVVYSKT-----WCSYSSEVKLLFKRL------GVEPLVIELDEMGPQGPQLQKLLERLTGQ 134 (174)
Q Consensus 66 ~~~~~~~~~l~~~i~~~~Vviy~~~-----~Cp~C~~ak~~L~~~------~v~~~~vdid~~~~~~~~~~~~l~~~~g~ 134 (174)
++++..++.|+++-+.-.|.+|... .=++=..++.+|+++ ++.++++|.+. +....++....+ |.
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~---~~~~~~~~~~~~-Gi 86 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDE---NPSEAEEKAKEY-GI 86 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCC---ChHHHHHHHHhc-CC
Confidence 5677888899998887778888876 466778899999886 46666676644 233444444443 55
Q ss_pred Ccc
Q 030613 135 HTV 137 (174)
Q Consensus 135 ~tv 137 (174)
..+
T Consensus 87 ~~~ 89 (271)
T PF09822_consen 87 QPV 89 (271)
T ss_pred Ccc
Confidence 443
No 288
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=71.00 E-value=8.1 Score=27.84 Aligned_cols=49 Identities=10% Similarity=0.336 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHHHc-----CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECC
Q 030613 91 WCSYSSEVKLLFKRL-----GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 91 ~Cp~C~~ak~~L~~~-----~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
.||+|..+.-+|... .++.+.|+... -..++.+.+-+ .+-+.|++..++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE--~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGE--ANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhCh--hccCCCEEEeCC
Confidence 499999999999864 34444455544 23334443333 366899888865
No 289
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=69.28 E-value=31 Score=24.34 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=33.3
Q ss_pred CChhHHHH-HHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEe
Q 030613 91 WCSYSSEV-KLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIG 148 (174)
Q Consensus 91 ~Cp~C~~a-k~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iG 148 (174)
.|-.|..+ +++|.+.+++-+.+.+..--..++- ...+..+.. -.|-.||.|.|
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~---I~sd~~~~~--~sIt~NG~H~g 73 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPF---IYSDRLGPQ--ESITTNGRHYG 73 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCce---ehhhhhcCC--cceeeCCEEEE
Confidence 49999766 8999999999999988762011111 112221111 46677887764
No 290
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=69.15 E-value=8.6 Score=26.62 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=24.5
Q ss_pred hhHHHHHHHHh----cCCCEEEEEeCCChhHHHHHHHHHHcC
Q 030613 69 SRLEESVKKTV----SENPVVVYSKTWCSYSSEVKLLFKRLG 106 (174)
Q Consensus 69 ~~~~~~l~~~i----~~~~Vviy~~~~Cp~C~~ak~~L~~~~ 106 (174)
++.++.|++.. +.-.+++|+.+. ++|.+.+++|++..
T Consensus 4 ~~~~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a 44 (94)
T cd02974 4 ANLKQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIA 44 (94)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHH
Confidence 34444444443 333455677766 99999999998864
No 291
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=68.55 E-value=15 Score=26.77 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=30.1
Q ss_pred CChhHH-----------HHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEE
Q 030613 91 WCSYSS-----------EVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHI 147 (174)
Q Consensus 91 ~Cp~C~-----------~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~i 147 (174)
+|+.|. +++..|..+|++....++... ..+ +... .-..|.|.|||+.|
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~---~~~----~~~~--~~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELD---EEE----FARQ--PLESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECC---hHH----Hhhc--ccCCCeeeECCEeh
Confidence 788885 455567778887655444431 112 2221 26789999999976
No 292
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=68.32 E-value=2.4 Score=38.70 Aligned_cols=67 Identities=16% Similarity=0.310 Sum_probs=42.2
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCC----CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE---C------CeEEec
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVE----PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI---G------GKHIGG 149 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~----~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI---~------G~~iGG 149 (174)
.+|=|..+||++|++....+++...+ ..++-|..++ ..++.-..+.+-.+.+.+|.+.- + |..+.|
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVd-CA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~ 138 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVD-CADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSG 138 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEee-ccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccC
Confidence 35667779999999988888775433 2333443331 22333444566568999998865 2 666777
Q ss_pred c
Q 030613 150 C 150 (174)
Q Consensus 150 ~ 150 (174)
.
T Consensus 139 ~ 139 (606)
T KOG1731|consen 139 P 139 (606)
T ss_pred C
Confidence 4
No 293
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=67.66 E-value=7.8 Score=35.53 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=37.7
Q ss_pred CchhHHHHHHHHhcCCCEEEEE--eCCChhHHHHHH-HH------HHcCCCCeEEEecccCCCcHHHHH----HHHHHhC
Q 030613 67 YGSRLEESVKKTVSENPVVVYS--KTWCSYSSEVKL-LF------KRLGVEPLVIELDEMGPQGPQLQK----LLERLTG 133 (174)
Q Consensus 67 ~~~~~~~~l~~~i~~~~Vviy~--~~~Cp~C~~ak~-~L------~~~~v~~~~vdid~~~~~~~~~~~----~l~~~~g 133 (174)
+-+--+++++++.+.++.++.+ .++|-+|+-++. -+ +.++.+|..++||.. +.+++.+ .+...+|
T Consensus 97 wypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDRE--ERPDVDK~YM~Fv~assg 174 (786)
T KOG2244|consen 97 WYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDRE--ERPDVDKLYMAFVVASSG 174 (786)
T ss_pred cCcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChh--hcCchHHHHHHHHHhccC
Confidence 3344467777777777766543 478999974422 11 123334555666653 3444433 2333445
Q ss_pred CCccc
Q 030613 134 QHTVP 138 (174)
Q Consensus 134 ~~tvP 138 (174)
...+|
T Consensus 175 ~GGWP 179 (786)
T KOG2244|consen 175 GGGWP 179 (786)
T ss_pred CCCCc
Confidence 55555
No 294
>PRK13190 putative peroxiredoxin; Provisional
Probab=67.54 E-value=7.2 Score=30.55 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=13.9
Q ss_pred CCEEE--EEeCCChhHHHHHHHHH
Q 030613 82 NPVVV--YSKTWCSYSSEVKLLFK 103 (174)
Q Consensus 82 ~~Vvi--y~~~~Cp~C~~ak~~L~ 103 (174)
..++| |...|||.|..-...|.
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~ 51 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFS 51 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHH
Confidence 33554 56789999985544443
No 295
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=66.42 E-value=23 Score=25.84 Aligned_cols=50 Identities=12% Similarity=-0.031 Sum_probs=36.0
Q ss_pred CchhHHHHHHHHhc-CCCEEEEEeCCChhHH------------HHHHHHHHcCCCCeEEEecc
Q 030613 67 YGSRLEESVKKTVS-ENPVVVYSKTWCSYSS------------EVKLLFKRLGVEPLVIELDE 116 (174)
Q Consensus 67 ~~~~~~~~l~~~i~-~~~Vviy~~~~Cp~C~------------~ak~~L~~~~v~~~~vdid~ 116 (174)
......+.++++.+ ...|++.|.-....+. ...++|++++++|..+.+.+
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 44566777777644 4556666655555555 77999999999999888876
No 296
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=65.47 E-value=36 Score=28.89 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=40.2
Q ss_pred eCCChhHHHHHHHHHHcC---CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 89 KTWCSYSSEVKLLFKRLG---VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 89 ~~~Cp~C~~ak~~L~~~~---v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
--+|+.|++++-+|+.+. ..+.++-||. ..+.+++....+ ....+|.|-+.| .+|.|++...+
T Consensus 82 ELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDI---S~~~L~~a~~~L-~~~~~p~l~v~~-l~gdy~~~l~~ 147 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALERQKKSVDYYALDV---SRSELQRTLAEL-PLGNFSHVRCAG-LLGTYDDGLAW 147 (319)
T ss_pred EECCCchHHHHHHHHHHHhcCCCceEEEEEC---CHHHHHHHHHhh-hhccCCCeEEEE-EEecHHHHHhh
Confidence 346999999999888752 3344555544 135666666555 224578887777 67777765543
No 297
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=64.00 E-value=43 Score=23.10 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=36.6
Q ss_pred hhHHHHHHHHhcCCCEEEEEeCCC-hhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 69 SRLEESVKKTVSENPVVVYSKTWC-SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 69 ~~~~~~l~~~i~~~~Vviy~~~~C-p~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
+...+.++.+.+.++-++|.+.++ ..-....+.|+.+|++...-+|-. ......+.+++.
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~t---s~~~~~~~l~~~ 77 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIIT---SGMAAAEYLKEH 77 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEE---HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEC---hHHHHHHHHHhc
Confidence 345677888877766555555555 444677788899999854433332 345667777775
No 298
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=63.46 E-value=34 Score=27.65 Aligned_cols=83 Identities=14% Similarity=0.225 Sum_probs=49.0
Q ss_pred hHHHHHHHHhcC-CCEEEEE------eCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 70 RLEESVKKTVSE-NPVVVYS------KTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 70 ~~~~~l~~~i~~-~~Vviy~------~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
...+.+...++. .+=+.|. ..+-+|-.++++.|.++|.....+++.+. ..+++...+.+ .=.|+|
T Consensus 19 ~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~--~~~~Ie~~l~~------~d~IyV 90 (224)
T COG3340 19 HFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP--PLAAIENKLMK------ADIIYV 90 (224)
T ss_pred hhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC--CHHHHHHhhhh------ccEEEE
Confidence 344555554444 3333342 24578999999999999999888888773 44445444433 234555
Q ss_pred CCeEEec-chHHHHHHhhCchH
Q 030613 143 GGKHIGG-CTDTVKLYRKGELE 163 (174)
Q Consensus 143 ~G~~iGG-~del~~l~~~g~L~ 163 (174)
+| |. |+-|+++.+.|-+.
T Consensus 91 gG---GNTF~LL~~lke~gld~ 109 (224)
T COG3340 91 GG---GNTFNLLQELKETGLDD 109 (224)
T ss_pred CC---chHHHHHHHHHHhCcHH
Confidence 54 11 44455565555443
No 299
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=63.00 E-value=24 Score=30.36 Aligned_cols=86 Identities=5% Similarity=-0.051 Sum_probs=60.6
Q ss_pred hHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEE----------ecccCCCcHHHHHHHHHHhCCCcccE
Q 030613 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE----------LDEMGPQGPQLQKLLERLTGQHTVPN 139 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vd----------id~~~~~~~~~~~~l~~~~g~~tvP~ 139 (174)
.+.+.+..+++..-+.||+-+.|.--..+..++..+.++|.... |...++-...+.+.++. .+|+.|=.
T Consensus 51 ~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~-~~Wr~~~~ 129 (372)
T cd06387 51 SVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAH-YKWEKFVY 129 (372)
T ss_pred HHHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHh-cCCCEEEE
Confidence 56778999999999999999999888888999999988875432 22222233344555544 59999988
Q ss_pred EEECCeEEecchHHHHH
Q 030613 140 VFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 140 IfI~G~~iGG~del~~l 156 (174)
||-++..+++..+|.+.
T Consensus 130 iYd~d~gl~~Lq~L~~~ 146 (372)
T cd06387 130 LYDTERGFSILQAIMEA 146 (372)
T ss_pred EecCchhHHHHHHHHHh
Confidence 88666655555555443
No 300
>PRK13599 putative peroxiredoxin; Provisional
Probab=62.94 E-value=12 Score=29.74 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=12.7
Q ss_pred CCCEEE--EEeCCChhHHHHHHHH
Q 030613 81 ENPVVV--YSKTWCSYSSEVKLLF 102 (174)
Q Consensus 81 ~~~Vvi--y~~~~Cp~C~~ak~~L 102 (174)
...+++ |...|||.|..-...|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l 51 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEF 51 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHH
Confidence 334443 4557899998643333
No 301
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=62.81 E-value=4.8 Score=31.53 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=15.8
Q ss_pred CEEEEEeCCChhHHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLL 101 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~ 101 (174)
.|+-|...+||+|.+....
T Consensus 40 ~VvEffdy~CphC~~~~~~ 58 (207)
T PRK10954 40 QVLEFFSFYCPHCYQFEEV 58 (207)
T ss_pred eEEEEeCCCCccHHHhccc
Confidence 4889999999999986543
No 302
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=62.46 E-value=12 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.091 Sum_probs=19.0
Q ss_pred EEEEEeCCChhHHHHHHHHH----HcCCCCeE
Q 030613 84 VVVYSKTWCSYSSEVKLLFK----RLGVEPLV 111 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~----~~~v~~~~ 111 (174)
|.+|+..-||||--....|+ +++++++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~ 32 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRY 32 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEE
Confidence 46899999999976655554 45555443
No 303
>PRK15000 peroxidase; Provisional
Probab=61.44 E-value=22 Score=27.81 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=14.6
Q ss_pred cCCCEEEEEeC--CChhHHHHHHHHH
Q 030613 80 SENPVVVYSKT--WCSYSSEVKLLFK 103 (174)
Q Consensus 80 ~~~~Vviy~~~--~Cp~C~~ak~~L~ 103 (174)
+...+++|..+ |||.|..-..-|.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~ 58 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFD 58 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHH
Confidence 44456666554 6899986444443
No 304
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=61.05 E-value=16 Score=28.48 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=21.3
Q ss_pred CEEEEEeCCChhHHHHHHHH----HHcCCCC--eEEEec
Q 030613 83 PVVVYSKTWCSYSSEVKLLF----KRLGVEP--LVIELD 115 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L----~~~~v~~--~~vdid 115 (174)
+|.+|+..-||||-=+++-| +..+++. ..+.++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L~ 40 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFLG 40 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 57899999999996554444 4455543 344443
No 305
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=61.04 E-value=44 Score=21.92 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=37.7
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 81 ~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
..+|.+.+-+....=.+.++++++.+.++..+.++. .. ...+.+..+...+|++++
T Consensus 33 ~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~l~~~~~i~~iP~~~l 88 (95)
T PF13905_consen 33 KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDD-----DN-NSELLKKYGINGIPTLVL 88 (95)
T ss_dssp TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTT-----HH-HHHHHHHTT-TSSSEEEE
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCc-----ch-HHHHHHHCCCCcCCEEEE
Confidence 455665555556777888999999988777766653 22 344556669999998876
No 306
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=60.71 E-value=25 Score=26.06 Aligned_cols=64 Identities=19% Similarity=0.460 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhhCchHHHHHh
Q 030613 94 YSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSE 168 (174)
Q Consensus 94 ~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~g~L~~~L~~ 168 (174)
|-+++++.|.++|+++..+++... +..+..+.+. ..-.||+.| |.-..+.+..++-.|.+.|++
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~--~~~~~~~~i~------~ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDR--NDADILEAIR------EADAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSC--GHHHHHHHHH------HSSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCC--ChHHHHHHHH------hCCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 446889999999988666666552 2333344333 344666654 222333444455556666654
No 307
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.30 E-value=7.7 Score=29.63 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCCCeEEE--ecccCCCcHHHHHHHH--HHhCCCcccEEEECCe-EEecchHH
Q 030613 97 EVKLLFKRLGVEPLVIE--LDEMGPQGPQLQKLLE--RLTGQHTVPNVFIGGK-HIGGCTDT 153 (174)
Q Consensus 97 ~ak~~L~~~~v~~~~vd--id~~~~~~~~~~~~l~--~~~g~~tvP~IfI~G~-~iGG~del 153 (174)
.+.+++.+.|++...+. ++.. .....+++..+ ...|...+|.++|||+ .+.|....
T Consensus 133 ~l~~~a~~~Gld~~~~~~~~~~~-~~~~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~ 193 (201)
T cd03024 133 VLVDLAEEAGLDAAEARAVLASD-EYADEVRADEARARQLGISGVPFFVFNGKYAVSGAQPP 193 (201)
T ss_pred HHHHHHHHcCCCHHHHHHHhcCc-ccchHHHHHHHHHHHCCCCcCCEEEECCeEeecCCCCH
Confidence 46777788887643221 1110 11222222222 2248899999999987 45676543
No 308
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=59.89 E-value=40 Score=26.66 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=16.5
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHH
Q 030613 81 ENPVVVYSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 81 ~~~Vviy~~~~Cp~C~~ak~~L~~ 104 (174)
...|++|....||||++...-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 445777888888888666555554
No 309
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=58.53 E-value=47 Score=28.36 Aligned_cols=87 Identities=7% Similarity=-0.047 Sum_probs=60.2
Q ss_pred hHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEE----------ecccCCCcHHHHHHHHHHhCCCcccE
Q 030613 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE----------LDEMGPQGPQLQKLLERLTGQHTVPN 139 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vd----------id~~~~~~~~~~~~l~~~~g~~tvP~ 139 (174)
...+.+.++++..-+.||+-..+..+..+..+.++.++++-... +...++....+.+.+ +..+|+++=.
T Consensus 51 ~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i-~~~~wk~vai 129 (371)
T cd06388 51 AVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLL-DHYEWNRFVF 129 (371)
T ss_pred HHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHH-HhcCceEEEE
Confidence 56678999999999999999999999999999999998864321 121111222233333 3458999988
Q ss_pred EEECCeEEecchHHHHHH
Q 030613 140 VFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 140 IfI~G~~iGG~del~~l~ 157 (174)
++..+.-++..+.+.+..
T Consensus 130 iYd~~~~~~~lq~l~~~~ 147 (371)
T cd06388 130 LYDTDRGYSILQAIMEKA 147 (371)
T ss_pred EecCCccHHHHHHHHHhh
Confidence 887666566666665543
No 310
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=56.60 E-value=42 Score=25.61 Aligned_cols=72 Identities=7% Similarity=0.084 Sum_probs=46.4
Q ss_pred EEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH----------------------hCCCcccEEEE-
Q 030613 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL----------------------TGQHTVPNVFI- 142 (174)
Q Consensus 86 iy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~----------------------~g~~tvP~IfI- 142 (174)
+=+++.=|+++++...|+++|++|+..-..-++ ..+++.++++++ .+..++|+|=+
T Consensus 5 mGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHR-tp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP 83 (156)
T TIGR01162 5 MGSDSDLPTMKKAADILEEFGIPYELRVVSAHR-TPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVP 83 (156)
T ss_pred ECcHhhHHHHHHHHHHHHHcCCCeEEEEECccc-CHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEec
Confidence 334466799999999999999998776665542 344555555442 22355676543
Q ss_pred -CCeEEecchHHHHHHh
Q 030613 143 -GGKHIGGCTDTVKLYR 158 (174)
Q Consensus 143 -~G~~iGG~del~~l~~ 158 (174)
.....+|.|.|....+
T Consensus 84 ~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 84 VPSKALSGLDSLLSIVQ 100 (156)
T ss_pred CCccCCCCHHHHHHHhc
Confidence 4445677777766554
No 311
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=56.19 E-value=46 Score=25.79 Aligned_cols=22 Identities=5% Similarity=-0.186 Sum_probs=13.5
Q ss_pred CCEEEE-E-eCCChhHHHHHHHHH
Q 030613 82 NPVVVY-S-KTWCSYSSEVKLLFK 103 (174)
Q Consensus 82 ~~Vviy-~-~~~Cp~C~~ak~~L~ 103 (174)
..+++| . ..|||.|..-..-|.
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~ 55 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVA 55 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHH
Confidence 345554 4 589999986444343
No 312
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=56.02 E-value=11 Score=29.19 Aligned_cols=17 Identities=12% Similarity=0.304 Sum_probs=13.1
Q ss_pred CCCEEEEEeCCChhHHH
Q 030613 81 ENPVVVYSKTWCSYSSE 97 (174)
Q Consensus 81 ~~~Vviy~~~~Cp~C~~ 97 (174)
..-+++|+.+||++|.+
T Consensus 26 KvvLVvf~AS~C~~~~q 42 (183)
T PRK10606 26 NVLLIVNVASKCGLTPQ 42 (183)
T ss_pred CEEEEEEEeCCCCCcHH
Confidence 33467789999999974
No 313
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=55.99 E-value=68 Score=26.38 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=47.2
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHHcCC-CCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEE
Q 030613 80 SENPVVVYSKTWCSYSSEVKLLFKRLGV-EPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHI 147 (174)
Q Consensus 80 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~v-~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~i 147 (174)
..+.|.+|+..+|+-+.-+|.+|.++.- -...|+|.+. +-..+.+.+..+...+.-=.||+|+=..
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~--~L~~l~~l~~~l~~~~~kFIlf~DDLsF 117 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE--DLGDLPELLDLLRDRPYKFILFCDDLSF 117 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH--HhccHHHHHHHHhcCCCCEEEEecCCCC
Confidence 4567999999999999999999998754 3678888873 3445566665554444322678888443
No 314
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=53.21 E-value=73 Score=23.65 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=14.6
Q ss_pred HHHhcCCCEEEEEe--CCChhHHHH
Q 030613 76 KKTVSENPVVVYSK--TWCSYSSEV 98 (174)
Q Consensus 76 ~~~i~~~~Vviy~~--~~Cp~C~~a 98 (174)
.+..+..+++||.. .+||.|..-
T Consensus 24 ~~~~~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 24 SELFKGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred HHHhCCCcEEEEEeCCCCCCCCchh
Confidence 34334556777665 579999864
No 315
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=52.81 E-value=36 Score=29.30 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=46.0
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccC-CCcHHHHHHHHHHhCCCcccEEEE---CCeEEecchHHHHH
Q 030613 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG-PQGPQLQKLLERLTGQHTVPNVFI---GGKHIGGCTDTVKL 156 (174)
Q Consensus 81 ~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~-~~~~~~~~~l~~~~g~~tvP~IfI---~G~~iGG~del~~l 156 (174)
..+.++|....+.+|. .+...-+|+....|.++... -+.+++++.+.+......+|.++| |....|.+|++.++
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i 216 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEI 216 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHH
Confidence 4568899988888886 66667777777777777521 134567777776555556774333 44566778888643
No 316
>PRK13189 peroxiredoxin; Provisional
Probab=52.65 E-value=17 Score=28.92 Aligned_cols=19 Identities=5% Similarity=-0.053 Sum_probs=11.6
Q ss_pred CCCEEE--EEeCCChhHHHHH
Q 030613 81 ENPVVV--YSKTWCSYSSEVK 99 (174)
Q Consensus 81 ~~~Vvi--y~~~~Cp~C~~ak 99 (174)
...+++ |...|||.|..-.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl 55 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEF 55 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHH
Confidence 333544 4568899997533
No 317
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=52.42 E-value=1e+02 Score=23.65 Aligned_cols=78 Identities=14% Similarity=0.073 Sum_probs=40.7
Q ss_pred CCchhHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCC------------CeEEEecccCCCcHHHHHHHHHHhC
Q 030613 66 SYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVE------------PLVIELDEMGPQGPQLQKLLERLTG 133 (174)
Q Consensus 66 ~~~~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~------------~~~vdid~~~~~~~~~~~~l~~~~g 133 (174)
.+-+++.+.|+++.. ..+.|=..+.+..=.-|+++|+.+++. |...+|-.. .....-+.+++.+|
T Consensus 45 ~lypdv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g--sK~~Hf~~i~~~tg 121 (169)
T PF12689_consen 45 SLYPDVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG--SKTTHFRRIHRKTG 121 (169)
T ss_dssp ---TTHHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS---HHHHHHHHHHHH-
T ss_pred EeCcCHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC--chHHHHHHHHHhcC
Confidence 445666777776665 444444444444338899999998877 345666552 22233334556677
Q ss_pred CCcccEEEECCeE
Q 030613 134 QHTVPNVFIGGKH 146 (174)
Q Consensus 134 ~~tvP~IfI~G~~ 146 (174)
.+.-=.+|+|++.
T Consensus 122 I~y~eMlFFDDe~ 134 (169)
T PF12689_consen 122 IPYEEMLFFDDES 134 (169)
T ss_dssp --GGGEEEEES-H
T ss_pred CChhHEEEecCch
Confidence 7766688988863
No 318
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=52.08 E-value=22 Score=29.23 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=51.8
Q ss_pred hcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeE--------EEecccCCCcHHHHHHHHHHhCCCcccE-----EEECCe
Q 030613 79 VSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLV--------IELDEMGPQGPQLQKLLERLTGQHTVPN-----VFIGGK 145 (174)
Q Consensus 79 i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~--------vdid~~~~~~~~~~~~l~~~~g~~tvP~-----IfI~G~ 145 (174)
+..+++.+|+.-.=..-.++...|++.|++|+. +-|++ .+-.+.+..|... |.+.-.. +|-++.
T Consensus 16 l~gC~~~LysgL~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~--~~~~~Ar~~La~~-GLP~~g~~~~~~lFd~~~ 92 (249)
T PRK15348 16 LTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQ--SQFINAVELLRLN-GYPHRQFTTADKMFPANQ 92 (249)
T ss_pred HhcCChHHHcCCCHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecH--HHHHHHHHHHHHc-CCCCCCCccHHHhCCccc
Confidence 455677888876667778999999999999964 23332 1233345555554 4332221 443343
Q ss_pred EEecchHHHH---HHhhCchHHHHHhc
Q 030613 146 HIGGCTDTVK---LYRKGELEPLLSEA 169 (174)
Q Consensus 146 ~iGG~del~~---l~~~g~L~~~L~~~ 169 (174)
.+-|-.|..+ +..+|||.+.|...
T Consensus 93 l~~t~te~~qki~y~regELarTI~~i 119 (249)
T PRK15348 93 LVVSPQEEQQKINFLKEQRIEGMLSQM 119 (249)
T ss_pred cccChhHHHHHHHHHHHHHHHHHHHhC
Confidence 4333344333 44679999888543
No 319
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=50.81 E-value=19 Score=32.21 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=25.7
Q ss_pred chhHHHHHHHHh----cCCCEEEEEeCCChhHHHHHHHHHHcC
Q 030613 68 GSRLEESVKKTV----SENPVVVYSKTWCSYSSEVKLLFKRLG 106 (174)
Q Consensus 68 ~~~~~~~l~~~i----~~~~Vviy~~~~Cp~C~~ak~~L~~~~ 106 (174)
.++.++.|+++. +.-.+++|.. .|++|.+++++|++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (517)
T PRK15317 3 DANLKTQLKQYLELLERPIELVASLD-DSEKSAELKELLEEIA 44 (517)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHHH
Confidence 344555555544 3334556766 7999999999999864
No 320
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=49.84 E-value=55 Score=27.81 Aligned_cols=86 Identities=7% Similarity=0.009 Sum_probs=58.6
Q ss_pred hHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEE----------ecccCCCcHHHHHHHHHHhCCCcccE
Q 030613 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE----------LDEMGPQGPQLQKLLERLTGQHTVPN 139 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vd----------id~~~~~~~~~~~~l~~~~g~~tvP~ 139 (174)
.+.+.+..+++..-+.||+-..+.-+..+..+.+++++++.... +...++....+.+.++. .+|++|=.
T Consensus 45 ~~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~-~~wk~vai 123 (370)
T cd06389 45 AVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEY-YQWDKFAY 123 (370)
T ss_pred HHHHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHHHh-cCCcEEEE
Confidence 56778999999999999999999999999999999999875421 11111233334454444 49999978
Q ss_pred EEECCeEEecchHHHHH
Q 030613 140 VFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 140 IfI~G~~iGG~del~~l 156 (174)
|+-++.-.+..+++.+.
T Consensus 124 lYdsd~gl~~lq~l~~~ 140 (370)
T cd06389 124 LYDSDRGLSTLQAVLDS 140 (370)
T ss_pred EecCchHHHHHHHHHHh
Confidence 88655444444454443
No 321
>PRK13191 putative peroxiredoxin; Provisional
Probab=49.83 E-value=27 Score=27.70 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=15.1
Q ss_pred cCCCEEE--EEeCCChhHHHHHHHHHH
Q 030613 80 SENPVVV--YSKTWCSYSSEVKLLFKR 104 (174)
Q Consensus 80 ~~~~Vvi--y~~~~Cp~C~~ak~~L~~ 104 (174)
+...++| |...|||.|..-...|.+
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~ 58 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAK 58 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHH
Confidence 3334554 466899999865544443
No 322
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=49.79 E-value=40 Score=27.79 Aligned_cols=25 Identities=4% Similarity=-0.083 Sum_probs=15.7
Q ss_pred HHHhcCCCEEEEE--eCCChhHHHHHH
Q 030613 76 KKTVSENPVVVYS--KTWCSYSSEVKL 100 (174)
Q Consensus 76 ~~~i~~~~Vviy~--~~~Cp~C~~ak~ 100 (174)
.+..+...+++|. ..|||.|..-..
T Consensus 93 sd~~kgk~vVL~FyPa~ftpvCt~El~ 119 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPLDFTFVCPSELL 119 (261)
T ss_pred HHHcCCCeEEEEEECCCCCCCCHHHHH
Confidence 3443555666664 479999986333
No 323
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=49.26 E-value=17 Score=23.26 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=12.3
Q ss_pred EEECCeEEecchHHH
Q 030613 140 VFIGGKHIGGCTDTV 154 (174)
Q Consensus 140 IfI~G~~iGG~del~ 154 (174)
||+||.++|=.++-.
T Consensus 1 VFlNG~~iG~~~~p~ 15 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPE 15 (63)
T ss_dssp EEETTEEEEEESSHH
T ss_pred CEECCEEEEEEcCHH
Confidence 799999999887633
No 324
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=48.23 E-value=1.2e+02 Score=23.03 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=30.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccE-EEEC
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPN-VFIG 143 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~-IfI~ 143 (174)
.+.|++-+.-..=..+++++++++++|..+-.|.. . . +....|...+|. ++||
T Consensus 97 ~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~---~-~----~~~~~gv~~~P~t~vid 150 (185)
T PRK15412 97 GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGD---G-M----LGLDLGVYGAPETFLID 150 (185)
T ss_pred CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCC---c-c----HHHhcCCCcCCeEEEEC
Confidence 34444433222235788899999999876544531 1 1 223348889994 5554
No 325
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.14 E-value=31 Score=27.32 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=19.6
Q ss_pred HhCCCcccEEEECCeEEecchHHH
Q 030613 131 LTGQHTVPNVFIGGKHIGGCTDTV 154 (174)
Q Consensus 131 ~~g~~tvP~IfI~G~~iGG~del~ 154 (174)
..|....|.+||+|+.++|+-++.
T Consensus 210 ~~gv~gTPt~~v~~~~~~g~~~~~ 233 (244)
T COG1651 210 QLGVNGTPTFIVNGKLVPGLPDLD 233 (244)
T ss_pred hcCCCcCCeEEECCeeecCCCCHH
Confidence 357889999999999898876543
No 326
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=48.01 E-value=88 Score=26.67 Aligned_cols=86 Identities=7% Similarity=-0.021 Sum_probs=58.6
Q ss_pred hHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEE----------EecccCCCcHHHHHHHHHHhCCCcccE
Q 030613 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVI----------ELDEMGPQGPQLQKLLERLTGQHTVPN 139 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~v----------did~~~~~~~~~~~~l~~~~g~~tvP~ 139 (174)
++.+.+.++++..-+.||+-..|.--.-+..+...+.+++... .|...++....+.+.++. .+|+.|=.
T Consensus 44 ~~~~~~C~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~~~~~~~~~i~~~P~~~~Ai~diI~~-~~W~~v~i 122 (364)
T cd06390 44 EMTYTFCSQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQDALISVIEH-YKWQKFVY 122 (364)
T ss_pred HHHHHHHHHhhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCCCCCCCceEEEeChhHHHHHHHHHHH-cCCcEEEE
Confidence 5667899999999999999887777777788888888876432 122221233444555544 59999988
Q ss_pred EEECCeEEecchHHHHH
Q 030613 140 VFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 140 IfI~G~~iGG~del~~l 156 (174)
|+.++.-.++..++.+.
T Consensus 123 IYd~d~g~~~lq~l~~~ 139 (364)
T cd06390 123 IYDADRGLSVLQKVLDT 139 (364)
T ss_pred EEeCCccHHHHHHHHHh
Confidence 88777655666555443
No 327
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=46.85 E-value=16 Score=23.58 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=20.2
Q ss_pred hCCCcccEEEECCeEEecchHHHHH-HhhCchHHHHHhc
Q 030613 132 TGQHTVPNVFIGGKHIGGCTDTVKL-YRKGELEPLLSEA 169 (174)
Q Consensus 132 ~g~~tvP~IfI~G~~iGG~del~~l-~~~g~L~~~L~~~ 169 (174)
.|....|.| |||.|-+..- -++-+|++||+++
T Consensus 13 pGa~~lP~I------IGGSDLi~h~~~knseleeWl~~e 45 (65)
T PF08599_consen 13 PGAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQE 45 (65)
T ss_pred CCCCCCCee------ecchhhhhccccccccHHHHHHHH
Confidence 456667764 6777644332 2557899999764
No 328
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=45.96 E-value=37 Score=29.99 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=45.6
Q ss_pred ccccccceeecccCCCchhH----HHHHHHHhcCCCEEEEE-----eCCChhHHHHHHHHHHcCCCCeEEEecc
Q 030613 52 RRRYGAVSVQAMASSYGSRL----EESVKKTVSENPVVVYS-----KTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (174)
Q Consensus 52 ~~~~~~~~~~~~~s~~~~~~----~~~l~~~i~~~~Vviy~-----~~~Cp~C~~ak~~L~~~~v~~~~vdid~ 116 (174)
+-.++++.+-+.-.++.-+. -..+..+...+.|||=. .++|-||+-++..|...|.+.+.|++-.
T Consensus 183 ~v~yePLGVI~aiVsWNYPfHN~lgPiiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~it 256 (583)
T KOG2454|consen 183 RVEYEPLGVIGAIVSWNYPFHNILGPIIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVIT 256 (583)
T ss_pred eEEEeecceEEEeeecCCchhhhhhHHHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheee
Confidence 44566666665555444333 45556677788888743 3789999999999999999887776543
No 329
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=45.85 E-value=86 Score=24.02 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=46.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHh--C--------------------CCcccEEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLT--G--------------------QHTVPNVF 141 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~--g--------------------~~tvP~If 141 (174)
|++=+++.-+.-+++...|+++|++|+..-+.-++ ..+.+.++.+... | ...+|+|=
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHR-TPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViG 85 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHR-TPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIG 85 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccC-CHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEe
Confidence 34445566788899999999999999988777652 2333344333321 1 13466654
Q ss_pred --ECCeEEecchHHHHH
Q 030613 142 --IGGKHIGGCTDTVKL 156 (174)
Q Consensus 142 --I~G~~iGG~del~~l 156 (174)
|..+.++|.|.|..-
T Consensus 86 VPv~s~~L~GlDSL~Si 102 (162)
T COG0041 86 VPVQSKALSGLDSLLSI 102 (162)
T ss_pred ccCccccccchHHHHHH
Confidence 477788888877543
No 330
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=45.30 E-value=62 Score=24.99 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=17.2
Q ss_pred CCEEEEEe--CCChhHHHHHHHHH-------HcCCCCeEEEec
Q 030613 82 NPVVVYSK--TWCSYSSEVKLLFK-------RLGVEPLVIELD 115 (174)
Q Consensus 82 ~~Vviy~~--~~Cp~C~~ak~~L~-------~~~v~~~~vdid 115 (174)
..++||.. .+||.|.....-|. +.|++.--+.+|
T Consensus 37 k~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d 79 (199)
T PTZ00253 37 KWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD 79 (199)
T ss_pred CEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34444444 56888875433333 345554444444
No 331
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=44.67 E-value=15 Score=27.71 Aligned_cols=21 Identities=10% Similarity=0.349 Sum_probs=16.1
Q ss_pred CEEEEEeCCChhHHHHHHHHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFK 103 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~ 103 (174)
+|.+|..+.||||-.+.+.|+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 478999999999975554444
No 332
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=44.37 E-value=28 Score=31.21 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=25.0
Q ss_pred chhHHHHHHHHhc----CCCEEEEEeCCChhHHHHHHHHHHcC
Q 030613 68 GSRLEESVKKTVS----ENPVVVYSKTWCSYSSEVKLLFKRLG 106 (174)
Q Consensus 68 ~~~~~~~l~~~i~----~~~Vviy~~~~Cp~C~~ak~~L~~~~ 106 (174)
+++.++.|++++. .-.+++|.. .|++|.+.+++|++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (515)
T TIGR03140 3 DQSLLAQLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEIA 44 (515)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHHH
Confidence 3445555555443 333555665 6999999999999864
No 333
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=43.25 E-value=22 Score=24.95 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.1
Q ss_pred CEEEEEeCCChhHHHH
Q 030613 83 PVVVYSKTWCSYSSEV 98 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~a 98 (174)
+|.||.-+-||+|++.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5889999999999873
No 334
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=42.06 E-value=6.4 Score=32.09 Aligned_cols=44 Identities=16% Similarity=0.422 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHc-------CCCCeEEEecc
Q 030613 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDE 116 (174)
Q Consensus 73 ~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~-------~v~~~~vdid~ 116 (174)
+-.+++++..=++.|..+|||-|...+..|++. ++..-++||..
T Consensus 32 enw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~ 82 (248)
T KOG0913|consen 32 ENWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTT 82 (248)
T ss_pred cchhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEe
Confidence 334555566668889999999999999999873 34445566654
No 335
>PRK08118 topology modulation protein; Reviewed
Probab=41.44 E-value=1.2e+02 Score=22.78 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=41.9
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCCeEEE-ec----ccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecc
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE-LD----EMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGC 150 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vd-id----~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~ 150 (174)
.+|+|.+.++|+=..-++.+-+.+++++...| +- -.....++..+.+++.... +.+.++|.+-+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~---~~wVidG~~~~~~ 72 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKE---DEWIIDGNYGGTM 72 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcC---CCEEEeCCcchHH
Confidence 56999999999999999999999998855443 21 0001223444444444332 4678888654433
No 336
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=41.40 E-value=60 Score=24.53 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=29.6
Q ss_pred EEEEEe--CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 84 VVVYSK--TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 84 Vviy~~--~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
|.|... +.=++++++...|+++|++|+..-+.-+ ...+++.+.++.+
T Consensus 3 V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saH-R~p~~l~~~~~~~ 51 (150)
T PF00731_consen 3 VAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAH-RTPERLLEFVKEY 51 (150)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TT-TSHHHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEecc-CCHHHHHHHHHHh
Confidence 444443 4568999999999999999876555543 2345566666554
No 337
>PTZ00494 tuzin-like protein; Provisional
Probab=41.06 E-value=98 Score=28.35 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=45.4
Q ss_pred HHHHHHhcCC-CEEEEEe-CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCe
Q 030613 73 ESVKKTVSEN-PVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK 145 (174)
Q Consensus 73 ~~l~~~i~~~-~Vviy~~-~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~ 145 (174)
+.+.++-..+ +|++|+. .+|+-|.-.+....+.+++--.+||... .+.++-.++.+ .||.|-+-|.
T Consensus 385 qvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~---EDtLrsVVKAL----gV~nve~CGD 452 (664)
T PTZ00494 385 SVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGT---EDTLRSVVRAL----GVSNVEVCGD 452 (664)
T ss_pred HHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCC---cchHHHHHHHh----CCCChhhhcc
Confidence 3444444444 4888877 6899999999999999999889999763 23455555554 5676666554
No 338
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=41.06 E-value=91 Score=24.57 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=25.9
Q ss_pred cCCC-EEEEEeCCCh-hHH----HHHHHHHHcC----CCCeEEEecccCCCcHHHHHHHHHHhC
Q 030613 80 SENP-VVVYSKTWCS-YSS----EVKLLFKRLG----VEPLVIELDEMGPQGPQLQKLLERLTG 133 (174)
Q Consensus 80 ~~~~-Vviy~~~~Cp-~C~----~ak~~L~~~~----v~~~~vdid~~~~~~~~~~~~l~~~~g 133 (174)
+... ++.|+-..|| -|. ....++++.+ .++..+.|..++ +.+. .+.++++..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP-erDt-p~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP-ERDT-PEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC-CCCC-HHHHHHHhc
Confidence 4444 5556667777 454 2444555544 344444443332 2222 666777754
No 339
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=41.05 E-value=81 Score=23.44 Aligned_cols=67 Identities=16% Similarity=0.383 Sum_probs=39.1
Q ss_pred HHHHHHhcCC--C--EEEEEeCCChhHHHHHHHHHHcCC---CCeE---EEecccCCCcHHHHHHHHHHhCCCccc--EE
Q 030613 73 ESVKKTVSEN--P--VVVYSKTWCSYSSEVKLLFKRLGV---EPLV---IELDEMGPQGPQLQKLLERLTGQHTVP--NV 140 (174)
Q Consensus 73 ~~l~~~i~~~--~--Vviy~~~~Cp~C~~ak~~L~~~~v---~~~~---vdid~~~~~~~~~~~~l~~~~g~~tvP--~I 140 (174)
.++.+++... + |+=|+..|-|-|-+.-.+|.+... .|.. +|++. .++.. ++.+-...| ..
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide-------V~~~~-~~~~l~~p~tvmf 83 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE-------VPDFV-KMYELYDPPTVMF 83 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch-------hhhhh-hhhcccCCceEEE
Confidence 3455554332 2 444999999999999999987532 2333 34443 33433 333555555 44
Q ss_pred EECCeEE
Q 030613 141 FIGGKHI 147 (174)
Q Consensus 141 fI~G~~i 147 (174)
|.+++|+
T Consensus 84 Ffn~kHm 90 (142)
T KOG3414|consen 84 FFNNKHM 90 (142)
T ss_pred EEcCceE
Confidence 6677765
No 340
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=40.55 E-value=1.6e+02 Score=25.09 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=32.4
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
.++.|.+.+....-.++...|++.++++..+++... +..+.+.+.+...
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~-p~~~~v~~~~~~~ 71 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGE-PSVELVDAAVAEA 71 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCC-cCHHHHHHHHHHH
Confidence 567666655555677888899999999887775543 3444555555443
No 341
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.30 E-value=64 Score=26.10 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=49.8
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhh--CchHHHHH
Q 030613 90 TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRK--GELEPLLS 167 (174)
Q Consensus 90 ~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~--g~L~~~L~ 167 (174)
+.-..|-.++.+|+-.+.+|.++--+.. + -++....+|.+-+|...+.+|..++...+. -.|..+|.
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Na--------e---fmSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~ls 100 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANA--------E---FMSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLS 100 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCc--------c---ccCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhh
Confidence 3467899999999999999987755431 1 122233899999999999999988776643 44566665
Q ss_pred hc
Q 030613 168 EA 169 (174)
Q Consensus 168 ~~ 169 (174)
+.
T Consensus 101 E~ 102 (257)
T KOG3027|consen 101 ED 102 (257)
T ss_pred hH
Confidence 44
No 342
>PLN02790 transketolase
Probab=40.24 E-value=66 Score=30.02 Aligned_cols=89 Identities=9% Similarity=0.004 Sum_probs=49.7
Q ss_pred CCEEEEE-eCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHH-------
Q 030613 82 NPVVVYS-KTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDT------- 153 (174)
Q Consensus 82 ~~Vviy~-~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del------- 153 (174)
.+|+|.+ .+....|.+|.+.|++.|+...+|++-...+-+.+........-+...-+.|.|....++|+...
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~~~~~ 620 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGSKGKV 620 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCCCceE
Confidence 3565554 35578899999999999999998887654222222222222222233334555544344554332
Q ss_pred ---HHHHhhCchHHHHHhcc
Q 030613 154 ---VKLYRKGELEPLLSEAK 170 (174)
Q Consensus 154 ---~~l~~~g~L~~~L~~~g 170 (174)
...-..|..+++++..|
T Consensus 621 igvd~Fg~sg~~~~l~~~~G 640 (654)
T PLN02790 621 IGVDRFGASAPAGILYKEFG 640 (654)
T ss_pred EEeCCCcCcCCHHHHHHHhC
Confidence 12335566667766655
No 343
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=40.12 E-value=1e+02 Score=22.81 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhC--CCcccEEEECCeEEecchHHHHHHh
Q 030613 95 SSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTG--QHTVPNVFIGGKHIGGCTDTVKLYR 158 (174)
Q Consensus 95 C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g--~~tvP~IfI~G~~iGG~del~~l~~ 158 (174)
-.-+.++|+++|.+...+.+-. ++.+++.+.+++... ...+ .|..+|--+|..|-+.+..+
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~--Dd~~~i~~~l~~~~~~~~~Dl-VittGG~s~g~~D~t~~al~ 84 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVP--DDKDEIREALIEWADEDGVDL-ILTTGGTGLAPRDVTPEATR 84 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcC--CCHHHHHHHHHHHHhcCCCCE-EEECCCcCCCCCcCcHHHHH
Confidence 3456778999998766655544 355667777776543 2222 45568888888877655543
No 344
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=39.31 E-value=61 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=25.9
Q ss_pred cCCCEEEEEeCCChhHHHHHHHHHHcCCC
Q 030613 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (174)
Q Consensus 80 ~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~ 108 (174)
+..+||+|-..+|..+..+...|..+|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 56789999999999999999999999965
No 345
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=37.94 E-value=76 Score=25.54 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=45.3
Q ss_pred EEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE--CCeEEecchHHHHHH----hhC
Q 030613 87 YSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI--GGKHIGGCTDTVKLY----RKG 160 (174)
Q Consensus 87 y~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI--~G~~iGG~del~~l~----~~g 160 (174)
..+.+-|.|.-+-..|.+++..|..+..-+.. ... .+ ..+.-...|++|| .|...+.+-.+..+- ...
T Consensus 118 Ly~~gvp~c~Ll~~~l~~la~kfp~iKFVki~--at~---cI-pNYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~e 191 (240)
T KOG3170|consen 118 LYKQGVPLCALLSHHLQSLACKFPQIKFVKIP--ATT---CI-PNYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTME 191 (240)
T ss_pred eeccccHHHHHHHHHHHHHhhcCCcceEEecc--ccc---cc-CCCcccCCCeEEEeecchHHhheehhhhhcCCcCCHH
Confidence 56688999999999999998887543332210 000 01 1124456898887 343222221122211 234
Q ss_pred chHHHHHhccccc
Q 030613 161 ELEPLLSEAKSAE 173 (174)
Q Consensus 161 ~L~~~L~~~g~~~ 173 (174)
++..+|-.+|++.
T Consensus 192 d~e~~L~qaga~l 204 (240)
T KOG3170|consen 192 DVEDFLVQAGAAL 204 (240)
T ss_pred HHHHHHHhccccc
Confidence 6677777787653
No 346
>PLN02590 probable tyrosine decarboxylase
Probab=37.38 E-value=1.6e+02 Score=26.83 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=45.8
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCC---CeEEEeccc---CCCcHHHHHHHHHHhCCCcccEEEE---CCeEEecchH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVE---PLVIELDEM---GPQGPQLQKLLERLTGQHTVPNVFI---GGKHIGGCTD 152 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~---~~~vdid~~---~~~~~~~~~~l~~~~g~~tvP~IfI---~G~~iGG~de 152 (174)
.++++|....+-+|. .+.+.-+|+. ...|.+|.. .=+.+.+++.+.+-......|.+.+ +-...|.+|+
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp 305 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP 305 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence 468999988888874 4444444553 455666521 0145667777766444456776554 5567788998
Q ss_pred HHHH
Q 030613 153 TVKL 156 (174)
Q Consensus 153 l~~l 156 (174)
+.++
T Consensus 306 l~~I 309 (539)
T PLN02590 306 LVPL 309 (539)
T ss_pred HHHH
Confidence 8654
No 347
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=37.36 E-value=27 Score=26.55 Aligned_cols=20 Identities=15% Similarity=0.296 Sum_probs=14.8
Q ss_pred EEEEEeCCChhHHHHHHHHH
Q 030613 84 VVVYSKTWCSYSSEVKLLFK 103 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~ 103 (174)
|.+|+..-||||--+..-|.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 46899999999985554443
No 348
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.29 E-value=1.3e+02 Score=20.32 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhcCCCEEEEEeCCChh--HHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHH
Q 030613 69 SRLEESVKKTVSENPVVVYSKTWCSY--SSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLER 130 (174)
Q Consensus 69 ~~~~~~l~~~i~~~~Vviy~~~~Cp~--C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~ 130 (174)
......+...++..++||+.+..+.+ +..+++..++.++++.+..-.. ...+.+.|.+
T Consensus 36 ~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~----~~~l~~~l~~ 95 (97)
T PF10087_consen 36 EKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRG----VSSLERALER 95 (97)
T ss_pred ccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCC----HHHHHHHHHh
Confidence 34445688889999999988888765 5788999999998877664322 2345555443
No 349
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=37.26 E-value=1.5e+02 Score=26.59 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=44.0
Q ss_pred CCCEEEEEe-CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHH-HHHHHHHHhCCCcccEEEECCeEEecchH
Q 030613 81 ENPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQ-LQKLLERLTGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 81 ~~~Vviy~~-~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~-~~~~l~~~~g~~tvP~IfI~G~~iGG~de 152 (174)
..+|+|.+. ..+..|.++.+.|.+.|++.+.+|+....+-+.+ +.+.+++ ++ .+ .++-++...||+..
T Consensus 340 G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~k-t~--~v-vtvEE~~~~gGlG~ 409 (464)
T PRK11892 340 GKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKK-TN--RL-VTVEEGWPQSGVGA 409 (464)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHh-cC--eE-EEEeCCCcCCcHHH
Confidence 345665544 4578899999999999999999998765443333 4444433 22 23 44456666788754
No 350
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=36.84 E-value=78 Score=22.24 Aligned_cols=27 Identities=19% Similarity=0.012 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCcccEEEECCeEEe
Q 030613 122 PQLQKLLERLTGQHTVPNVFIGGKHIG 148 (174)
Q Consensus 122 ~~~~~~l~~~~g~~tvP~IfI~G~~iG 148 (174)
....+.+++......+|...|+.+..|
T Consensus 61 ~~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 61 KMYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred HHHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 344556666666778999999998777
No 351
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=36.47 E-value=1.2e+02 Score=27.69 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHhcCCCEEEEEeCCCh-----hHHHHHHHHHHc-----CCCCeEEEecc
Q 030613 66 SYGSRLEESVKKTVSENPVVVYSKTWCS-----YSSEVKLLFKRL-----GVEPLVIELDE 116 (174)
Q Consensus 66 ~~~~~~~~~l~~~i~~~~Vviy~~~~Cp-----~C~~ak~~L~~~-----~v~~~~vdid~ 116 (174)
++++..++.|+.+-+.-.|.+|....-| +=.+++.+|+++ ++.++++|-..
T Consensus 34 tLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~ 94 (552)
T TIGR03521 34 TLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLE 94 (552)
T ss_pred ecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 5678888899998777778888776544 346788999875 34455555443
No 352
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=36.32 E-value=57 Score=23.74 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=31.7
Q ss_pred HHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchH
Q 030613 99 KLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 99 k~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~de 152 (174)
..++...+..|...+.+...-...++.+.|.+...--.-|.|..+|+.+-||++
T Consensus 53 ~~lin~~~~~~r~l~~~~~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~ 106 (126)
T TIGR01616 53 GSWFNRAAPRVKSGEVNPDSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFDR 106 (126)
T ss_pred HHHHhccchHhhhCCCCcccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCCH
Confidence 445555555555444332111234455555554444458999999999999975
No 353
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=36.08 E-value=1.3e+02 Score=25.48 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=40.9
Q ss_pred CCEEEEEe-CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHH-HHHHHHHHhCCCcccEEEE-CCeEEecchH
Q 030613 82 NPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQ-LQKLLERLTGQHTVPNVFI-GGKHIGGCTD 152 (174)
Q Consensus 82 ~~Vviy~~-~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~-~~~~l~~~~g~~tvP~IfI-~G~~iGG~de 152 (174)
.+++|.+. +....|.++.+.|++.|++...+++....+-+.+ +.+.+++. .. .|.+ ++...||+..
T Consensus 202 ~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~---~~--vv~vEe~~~~gGlg~ 270 (327)
T PRK09212 202 SDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKT---NR--LVVVEEGWPFAGVGA 270 (327)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhC---Ce--EEEEcCCCCCCCHHH
Confidence 44554443 5678899999999999999999888765444443 44544332 11 3333 4445677743
No 354
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=35.85 E-value=17 Score=28.84 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=34.8
Q ss_pred EEEEEe-----CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEE--ecchHHHHH
Q 030613 84 VVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHI--GGCTDTVKL 156 (174)
Q Consensus 84 Vviy~~-----~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~i--GG~del~~l 156 (174)
-.||.. -+|++|......=.+.+..+....+ +++.+.++.. +....=+++-||+.. -+..+|.++
T Consensus 23 ~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~-------~~I~~~i~~~-~~~~~~V~lTGGEP~~~~~l~~Ll~~ 94 (212)
T COG0602 23 PSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSA-------DEILADIKSL-GYKARGVSLTGGEPLLQPNLLELLEL 94 (212)
T ss_pred eeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCH-------HHHHHHHHhc-CCCcceEEEeCCcCCCcccHHHHHHH
Confidence 456666 3589998655533333333333333 3444445443 112223567799873 356666655
Q ss_pred Hhh
Q 030613 157 YRK 159 (174)
Q Consensus 157 ~~~ 159 (174)
.+.
T Consensus 95 l~~ 97 (212)
T COG0602 95 LKR 97 (212)
T ss_pred HHh
Confidence 544
No 355
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=35.29 E-value=1.2e+02 Score=22.85 Aligned_cols=29 Identities=17% Similarity=0.461 Sum_probs=21.3
Q ss_pred CCCEEEEEe-CCChhHHHH-HHHHHHcCCCC
Q 030613 81 ENPVVVYSK-TWCSYSSEV-KLLFKRLGVEP 109 (174)
Q Consensus 81 ~~~Vviy~~-~~Cp~C~~a-k~~L~~~~v~~ 109 (174)
...++||.. +-|.+|... ..+.++.|++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~ 129 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKS 129 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCe
Confidence 445778776 779999866 55557789874
No 356
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=35.12 E-value=69 Score=22.59 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=30.0
Q ss_pred HHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchH
Q 030613 100 LLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 100 ~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~de 152 (174)
.++...+-.|....++...-...+.-+.+.+...--.-|.|..|++.+-|+++
T Consensus 55 ~lin~~~~~~~~l~~~~~~ls~~e~i~~l~~~P~LikRPIi~~~~~~~vG~~~ 107 (114)
T TIGR00014 55 EMIRTKEALYKELGLSDPNLSDQELLDAMVAHPILLERPIVVAGDGARIGRPP 107 (114)
T ss_pred HHHhcCCcHHHHcCCCccCCCHHHHHHHHHHCcCcccCCeEEECCEEEEcCCH
Confidence 34444444454444332101234455555554444558999999999999874
No 357
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=34.89 E-value=73 Score=22.37 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=30.7
Q ss_pred HHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecch
Q 030613 99 KLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCT 151 (174)
Q Consensus 99 k~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~d 151 (174)
..++...+..|....++...-..++..+.+.+...--.-|.|+.+++.+-|+.
T Consensus 53 ~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~vG~~ 105 (112)
T cd03034 53 RDLLRTKEAPYKELGLADPELSDEELIDAMAAHPILIERPIVVTGDGAVLGRP 105 (112)
T ss_pred HHHHhcCCchHHHcCCCccCCCHHHHHHHHHhCcCcccCCEEEECCEEEEcCC
Confidence 34444444445554444211123445566666544556899999999888985
No 358
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=34.84 E-value=1.1e+02 Score=21.87 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 96 SEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 96 ~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
..+.++|+++|.+.....+-. ++.+++++.+++......+ .|..+|--+|-.|-+.+..
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~--Dd~~~I~~~l~~~~~~~dl-iittGG~g~g~~D~t~~~l 79 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVP--DDKEAIKEALREALERADL-VITTGGTGPGPDDVTPEAV 79 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeC--CCHHHHHHHHHHHHhCCCE-EEEcCCCCCCCCcCcHHHH
Confidence 456777888887765555543 3556677777776443333 5556887777777665544
No 359
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=34.57 E-value=1.4e+02 Score=25.57 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=44.3
Q ss_pred CCCEEEEEe-CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHH-HHHHHHHHhCCCcccEEEECCeEEecchHH
Q 030613 81 ENPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQ-LQKLLERLTGQHTVPNVFIGGKHIGGCTDT 153 (174)
Q Consensus 81 ~~~Vviy~~-~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~-~~~~l~~~~g~~tvP~IfI~G~~iGG~del 153 (174)
..+|+|.+. +....|.++.+.|++.|++.+.+|+....+-+.+ +.+.+++ + ..+ .++-++...||+.+.
T Consensus 228 G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~-t--~~v-vtvEE~~~~GGlGs~ 298 (356)
T PLN02683 228 GKDVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRK-T--NRL-VTVEEGWPQHGVGAE 298 (356)
T ss_pred CCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhh-c--CeE-EEEeCCCcCCCHHHH
Confidence 345666554 5568889999999999999999998765443433 3343332 2 223 444466677898653
No 360
>PRK04195 replication factor C large subunit; Provisional
Probab=34.57 E-value=3.3e+02 Score=24.16 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=27.3
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEe
Q 030613 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (174)
Q Consensus 81 ~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdi 114 (174)
...+++|+-++|+--.-+..+.++++.++.+++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 4558899999999999999999999866554444
No 361
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.22 E-value=1.1e+02 Score=20.90 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHhCCCcccEEEECCeEEecch
Q 030613 121 GPQLQKLLERLTGQHTVPNVFIGGKHIGGCT 151 (174)
Q Consensus 121 ~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~d 151 (174)
-....+.+++......+|...|+.+..|-.|
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~~~~Y~~md 90 (95)
T TIGR00853 60 VAYMLPDLKKETDKKGIPVEVINGAQYGKLT 90 (95)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeChhhcccCC
Confidence 3444555666656667899999988776554
No 362
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=34.17 E-value=1.2e+02 Score=21.87 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 96 SEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 96 ~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
..++.+|+++|.+...+.+-. ++.+++++.+.+......+ .|..+|--+|-.|-+.+..
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~--Dd~~~i~~~i~~~~~~~Dl-vittGG~g~g~~D~t~~ai 80 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVP--DDADSIRAALIEASREADL-VLTTGGTGVGRRDVTPEAL 80 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecC--CCHHHHHHHHHHHHhcCCE-EEECCCCCCCCCcchHHHH
Confidence 355667788886655544433 2556677777665333222 4445777777666665544
No 363
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=34.08 E-value=1.2e+02 Score=19.76 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=27.8
Q ss_pred hHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCC
Q 030613 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~ 108 (174)
...+.+..+-+..+|++|.. .+..+..+...|++.|.+
T Consensus 45 ~~~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 45 SLDDWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 34445555556678888876 677888888899998875
No 364
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=33.96 E-value=2.2e+02 Score=24.30 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=35.6
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHHcCCCCeEEE-ecccCCCcHHHHHHHHHHhCCCcccEEEECC
Q 030613 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 82 ~~Vviy~~~~---Cp~C~~ak~~L~~~~v~~~~vd-id~~~~~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
.+++|.+... -+...+++..|++.++++..++ +... +..+.+.+.++......-=-.|=|||
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~-p~~~~v~~~~~~~~~~~~D~IIaiGG 92 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEAD-PPEAVVEAAVEAARAAGADGVIGFGG 92 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCC-cCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4566655543 4678899999999998876553 3332 34455566555442221112444555
No 365
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.80 E-value=44 Score=22.29 Aligned_cols=22 Identities=5% Similarity=0.114 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHcCCCCeEE
Q 030613 91 WCSYSSEVKLLFKRLGVEPLVI 112 (174)
Q Consensus 91 ~Cp~C~~ak~~L~~~~v~~~~v 112 (174)
.=+||+++.++|+++++.|+.+
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeee
Confidence 3589999999999999988644
No 366
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=33.65 E-value=65 Score=25.84 Aligned_cols=93 Identities=16% Similarity=0.060 Sum_probs=49.7
Q ss_pred ccccccccccccceeecccCCCchhHHHHHHHHhcCCC-EEEEEe-------CCChhHHHHHHHH-------HHcCCCCe
Q 030613 46 LSVNGRRRRYGAVSVQAMASSYGSRLEESVKKTVSENP-VVVYSK-------TWCSYSSEVKLLF-------KRLGVEPL 110 (174)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~i~~~~-Vviy~~-------~~Cp~C~~ak~~L-------~~~~v~~~ 110 (174)
..++..||.++.+-+.....--++.-+-.|.++..... ++||.- .+||-|.-...-+ ...++.
T Consensus 31 dalaa~RR~LP~v~v~~~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~t-- 108 (211)
T PF05988_consen 31 DALAAERRRLPMVEVDKDYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTT-- 108 (211)
T ss_pred HHHHHHHhhCCCccCCCCeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCce--
Confidence 44555555655554444443333333445667776554 777643 5799997554433 444444
Q ss_pred EEEecccCCCcHHHHHHHHHHhCCCcccEEEECC
Q 030613 111 VIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 111 ~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
.+-|..- ..+.....++.-||. +|-+=-.|
T Consensus 109 fa~vSra---P~~~i~afk~rmGW~-~pw~Ss~g 138 (211)
T PF05988_consen 109 FAVVSRA---PLEKIEAFKRRMGWT-FPWYSSYG 138 (211)
T ss_pred EEEEeCC---CHHHHHHHHHhcCCC-ceEEEcCC
Confidence 4444442 233344445555887 88665544
No 367
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=32.71 E-value=1.4e+02 Score=21.78 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 97 EVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 97 ~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
-+...|+++|.+...+.+-.+ +.+++.+.+++......+ .|..+|--.|..|-+.+..
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~D--d~~~i~~~l~~~~~~~Dl-iIttGG~g~g~~D~t~~ai 88 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPD--DPEEIREILRKAVDEADV-VLTTGGTGVGPRDVTPEAL 88 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCC--CHHHHHHHHHHHHhCCCE-EEECCCCCCCCCccHHHHH
Confidence 456667777776655555442 455566666665322222 3444666666655555443
No 368
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=1.7e+02 Score=20.13 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=32.3
Q ss_pred CCEEEEEeCCChhHHH----HHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEE------ecch
Q 030613 82 NPVVVYSKTWCSYSSE----VKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHI------GGCT 151 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~----ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~i------GG~d 151 (174)
..|.|+.-..|.+--+ +.++|...+-+..+|-+.. |...+=.|++||..| |||-
T Consensus 6 p~i~I~YCtQCnWlLRa~WmaQElL~TF~~dlgeV~L~P----------------gTGG~FeI~~dg~~iWeRKrdGGFP 69 (99)
T COG3526 6 PRIEITYCTQCNWLLRAAWMAQELLSTFADDLGEVALIP----------------GTGGVFEITCDGVLIWERKRDGGFP 69 (99)
T ss_pred ceEEEEEechhhHHHHHHHHHHHHHHHHHhhhheEEEec----------------CCCceEEEEECCEEEEEeeccCCCC
Confidence 3477776444444433 3455555544333333321 333455778888776 8887
Q ss_pred HHHHH
Q 030613 152 DTVKL 156 (174)
Q Consensus 152 el~~l 156 (174)
+.+.+
T Consensus 70 ~ak~L 74 (99)
T COG3526 70 EAKVL 74 (99)
T ss_pred chHHH
Confidence 76554
No 369
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=32.19 E-value=65 Score=22.10 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=37.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccC-C----CcHHHHHHHHHHhCCCcccEEEECC
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG-P----QGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~-~----~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
|++++.++|+=..-++.+.+..++++..++..... . ....+.+.+.+......-..+|+|+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe 66 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDE 66 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 57899999999999999999998766555544321 0 1122344444432122235677776
No 370
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=32.14 E-value=44 Score=23.35 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHcCCCCeEEEecc-cCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchH
Q 030613 99 KLLFKRLGVEPLVIELDE-MGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 99 k~~L~~~~v~~~~vdid~-~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~de 152 (174)
..++...+..|....++. ..-..+++.+.+.+...--.-|.|..+++.+-||++
T Consensus 51 ~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikRPIi~~~~~~~iGf~~ 105 (105)
T cd03035 51 ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKRPVLETGGKVLVGFSE 105 (105)
T ss_pred HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeeecceEEeCCEEEEeeCC
Confidence 444444445565544431 101234455556555444458999989998889874
No 371
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.96 E-value=2.3e+02 Score=23.83 Aligned_cols=49 Identities=6% Similarity=0.146 Sum_probs=29.6
Q ss_pred CCEEEEEeCCC--hhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 82 NPVVVYSKTWC--SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 82 ~~Vviy~~~~C--p~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
.+++|.+.... +...+++..|++.++++.+.++... +..+.+.+..+..
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~-p~~~~v~~~~~~~ 73 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGE-CTRAEIERLAEIA 73 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCc-CCHHHHHHHHHHH
Confidence 45555444322 6778888899988888765556554 3344555554443
No 372
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=31.57 E-value=69 Score=22.35 Aligned_cols=29 Identities=21% Similarity=0.065 Sum_probs=21.3
Q ss_pred CcHHHHHHHHHHhCCCcccEEEECCeEEe
Q 030613 120 QGPQLQKLLERLTGQHTVPNVFIGGKHIG 148 (174)
Q Consensus 120 ~~~~~~~~l~~~~g~~tvP~IfI~G~~iG 148 (174)
+-....+.+++..+...+|+..|+.+..|
T Consensus 56 Qv~~~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 56 QMASYYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred hHHHHHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 34455666777767778999999987666
No 373
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=31.26 E-value=2.8e+02 Score=22.38 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=46.0
Q ss_pred CCCchhHHHHHHHHhcCC--CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE
Q 030613 65 SSYGSRLEESVKKTVSEN--PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 65 s~~~~~~~~~l~~~i~~~--~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI 142 (174)
.++..++...+.+..... .++++.....+.++++.+.|.+.+++=-++- ... .+.+++....+ . .+|.|++
T Consensus 13 npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~-s~~-~~~~~l~~~~~----~-~iPvV~~ 85 (279)
T PF00532_consen 13 NPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILA-SSE-NDDEELRRLIK----S-GIPVVLI 85 (279)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEE-SSS-CTCHHHHHHHH----T-TSEEEEE
T ss_pred CcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEe-ccc-CChHHHHHHHH----c-CCCEEEE
Confidence 345556666666666554 4677778888999888889988888744443 221 12344444332 2 6788887
Q ss_pred CCe
Q 030613 143 GGK 145 (174)
Q Consensus 143 ~G~ 145 (174)
+..
T Consensus 86 ~~~ 88 (279)
T PF00532_consen 86 DRY 88 (279)
T ss_dssp SS-
T ss_pred Eec
Confidence 664
No 374
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.15 E-value=39 Score=27.56 Aligned_cols=62 Identities=11% Similarity=0.272 Sum_probs=37.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCC-------eEEEecccCCCcHHHHHHHHHHhCCCcccEEE--ECCeEE
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEP-------LVIELDEMGPQGPQLQKLLERLTGQHTVPNVF--IGGKHI 147 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~-------~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If--I~G~~i 147 (174)
++-|...|.|.|.+.-..+.++.++| -.+||...+ +. ..+=.+....+.++.|++. -+|+.+
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfp-d~-a~kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFP-DV-AAKFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCc-Ch-HHheeeccCcccccCCeEEEEccchhh
Confidence 66688899999999888888765554 568887752 11 1111122234566677553 366544
No 375
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=30.84 E-value=3e+02 Score=23.33 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=55.2
Q ss_pred hhHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEE-----------------------ecccCCCcHHHH
Q 030613 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE-----------------------LDEMGPQGPQLQ 125 (174)
Q Consensus 69 ~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vd-----------------------id~~~~~~~~~~ 125 (174)
......++++++..-+.|++-.+|+-+..+..++.+.++++-... +... ++ .+..
T Consensus 49 ~~a~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~r-p~-~~~~ 126 (363)
T cd06381 49 FDAVQEACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLALR-PP-VRLN 126 (363)
T ss_pred HHHHHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEEe-cc-HHHH
Confidence 355677888888866678998889999999999999988764311 1111 11 1222
Q ss_pred HH---HHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 126 KL---LERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 126 ~~---l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
.. +....||..+=.++.+.....|..++.+.
T Consensus 127 ~ai~~lv~~~~wkkvavly~~d~g~~~l~~~~~~ 160 (363)
T cd06381 127 DVMLRLVTEWRWQKFVYFYDNDYDIRGLQEFLDQ 160 (363)
T ss_pred HHHHHHHHhCCCeEEEEEEECCchHHHHHHHHHH
Confidence 22 23345888887777777655555555443
No 376
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=30.81 E-value=1.6e+02 Score=27.60 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=43.1
Q ss_pred CCCEEEEEe-CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchH
Q 030613 81 ENPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 81 ~~~Vviy~~-~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~de 152 (174)
..+|+|.+. .....|.+|.+.|++.|+..+++|+....+-+.+....+.+. . . -.|.+.+..+||+..
T Consensus 544 G~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~--~-~-~vVt~Ee~~~GG~Gs 612 (641)
T PLN02234 544 GERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKS--H-E-VLITVEEGSIGGFGS 612 (641)
T ss_pred CCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHh--C-C-EEEEECCCCCCcHHH
Confidence 345666554 446789999999999999999999875444444443333321 1 1 234455445699854
No 377
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=30.70 E-value=3.9e+02 Score=23.98 Aligned_cols=59 Identities=8% Similarity=0.162 Sum_probs=34.4
Q ss_pred cceeecccCCCchhHHHHHHHHh----cCCCEEEEEeCCChhH-------HHHHHHHHHcCCCCeEEEec
Q 030613 57 AVSVQAMASSYGSRLEESVKKTV----SENPVVVYSKTWCSYS-------SEVKLLFKRLGVEPLVIELD 115 (174)
Q Consensus 57 ~~~~~~~~s~~~~~~~~~l~~~i----~~~~Vviy~~~~Cp~C-------~~ak~~L~~~~v~~~~vdid 115 (174)
-..+...+...-..+-+.+++.+ .+.++.++.-|....- .+++.+|++.+++|+.+.-.
T Consensus 83 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~ 152 (481)
T PLN02958 83 DFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETK 152 (481)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34444444333344444554444 4567888887765532 24666888999887766444
No 378
>PRK05899 transketolase; Reviewed
Probab=30.49 E-value=1.1e+02 Score=28.23 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=49.6
Q ss_pred CCEEEEEe-CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECC-------------eEE
Q 030613 82 NPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG-------------KHI 147 (174)
Q Consensus 82 ~~Vviy~~-~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G-------------~~i 147 (174)
.+|+|.+. .....|.+|.+.|++.|+..+++++-...+-+.+....+...-|...-+.|.+.+ ...
T Consensus 511 ~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~~~~~~~~~~~ 590 (624)
T PRK05899 511 PDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGWYKYVGLDGKV 590 (624)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccchhhhcCCCceE
Confidence 45555443 4457888999999999999999887654322222222222222333346666654 112
Q ss_pred ecchHHHHHHhhCchHHHHHhccc
Q 030613 148 GGCTDTVKLYRKGELEPLLSEAKS 171 (174)
Q Consensus 148 GG~del~~l~~~g~L~~~L~~~g~ 171 (174)
-|.++ .-..|..+++++..|+
T Consensus 591 iGv~~---f~~~g~~~~l~~~~gl 611 (624)
T PRK05899 591 LGIDT---FGASAPADELFKEFGF 611 (624)
T ss_pred EECCC---CCCCCCHHHHHHHhCC
Confidence 23444 2356777777776664
No 379
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=30.07 E-value=3e+02 Score=22.23 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=31.7
Q ss_pred CCchhHHHHHHHHhcCCCEEEEEeC------CChhHHHHHHHHHHcCCCCeEEE
Q 030613 66 SYGSRLEESVKKTVSENPVVVYSKT------WCSYSSEVKLLFKRLGVEPLVIE 113 (174)
Q Consensus 66 ~~~~~~~~~l~~~i~~~~Vviy~~~------~Cp~C~~ak~~L~~~~v~~~~vd 113 (174)
.+-++..+.+++.+...+-++|.-. +=.|..++++.|+++|++...++
T Consensus 15 ~~l~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~ 68 (233)
T PRK05282 15 GYLEHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIH 68 (233)
T ss_pred chHHHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEec
Confidence 3345666777777666555555431 23478899999999998755443
No 380
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=29.41 E-value=2.8e+02 Score=23.18 Aligned_cols=65 Identities=23% Similarity=0.234 Sum_probs=47.4
Q ss_pred hcCCCEEEEEeCCChhHHHHHHHHHHcCCC-CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCe
Q 030613 79 VSENPVVVYSKTWCSYSSEVKLLFKRLGVE-PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK 145 (174)
Q Consensus 79 i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~-~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~ 145 (174)
...+.|.+++.-+-+-+.-+|.++.+++-+ ...|+|++. +-..+...+..+.+.+.-=.||+|+-
T Consensus 83 ~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~--dl~~Lp~l~~~Lr~~~~kFIlFcDDL 148 (287)
T COG2607 83 LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE--DLATLPDLVELLRARPEKFILFCDDL 148 (287)
T ss_pred CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH--HHhhHHHHHHHHhcCCceEEEEecCC
Confidence 345679999999999999999999987655 357888874 55566666666644444336777774
No 381
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=29.38 E-value=55 Score=20.45 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=27.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECC
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
+.+|+...=-.+.-++.+|++.|+++...+-... .. ... .|....+.|+|..
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~---~~-----~g~-~g~~~~~~v~V~~ 52 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMS---GY-----AGE-PGTGGQVEVYVPE 52 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S-------SS---------S--SSSEEEEEEG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccc---hh-----hcc-cCccCceEEEECH
Confidence 4577776667788999999999999877655431 11 111 3444557888866
No 382
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=29.14 E-value=2.5e+02 Score=26.12 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=45.8
Q ss_pred CEEEEEeCCC---hhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 83 PVVVYSKTWC---SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 83 ~Vviy~~~~C---p~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
+|.|++...| --|+-...+|+.-.|.|..+.|... .+++...++....... +|+|| +||.-+|.++.
T Consensus 1 ~Vli~v~~dvDalcA~kiL~~Llk~d~I~~~l~PV~gy----~el~~~~~~~~~~~~~-vilIn---cGa~~dl~~~l 70 (622)
T PF02724_consen 1 SVLILVALDVDALCACKILTSLLKSDNIQYSLVPVSGY----SELERAYEELDEDIKS-VILIN---CGATVDLEEFL 70 (622)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHHhcCCCeeEEEeCCH----HHHHHHHHHHhhhhce-EEEEe---cCchhhHHHHh
Confidence 3677776554 3466778888899999999999864 5667766666332222 67775 47777776654
No 383
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=29.13 E-value=78 Score=22.12 Aligned_cols=31 Identities=19% Similarity=0.078 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCcccEEEECCeEEecchH
Q 030613 122 PQLQKLLERLTGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 122 ~~~~~~l~~~~g~~tvP~IfI~G~~iGG~de 152 (174)
.++.+.+.+...--.-|.|..+++.+-||++
T Consensus 78 ~e~~~~l~~~p~LikRPIi~~~~~~~vGf~~ 108 (111)
T cd03036 78 EEALELLSSDGMLIKRPFVVDDDKVLVGFKE 108 (111)
T ss_pred HHHHHHHHhCcCeeeCCEEEeCCEEEEccCh
Confidence 4455555554444458999999999999985
No 384
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=29.04 E-value=1.5e+02 Score=20.22 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCcccEEEECCeEEecch
Q 030613 122 PQLQKLLERLTGQHTVPNVFIGGKHIGGCT 151 (174)
Q Consensus 122 ~~~~~~l~~~~g~~tvP~IfI~G~~iGG~d 151 (174)
....+.+++......+|...|+.+..|-.|
T Consensus 57 ~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~d 86 (96)
T cd05564 57 RYMLDEVKKKAAEYGIPVAVIDMMDYGMMN 86 (96)
T ss_pred HHHHHHHHHHhccCCCcEEEcChHhcccCC
Confidence 334555555556778999999998777554
No 385
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=28.99 E-value=2.6e+02 Score=24.38 Aligned_cols=85 Identities=12% Similarity=0.145 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEE-E----------------------ecccCC--CcHHHH
Q 030613 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVI-E----------------------LDEMGP--QGPQLQ 125 (174)
Q Consensus 71 ~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~v-d----------------------id~~~~--~~~~~~ 125 (174)
...++.++++..-+.||+-..|.--.-+..+.+++.|++-.. . +...++ ....+.
T Consensus 51 ~~~~ac~l~~~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is~~~~~~~~~~~~~~~~p~~~~~~~~~~lrp~~~~~~Ai~ 130 (400)
T cd06392 51 AVQEACDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNSGGSPRTACHLNPSPEGEEYTLAARPPVRLNDVML 130 (400)
T ss_pred HHHHHHHHHhcCeEEEECCCchhHHHHHHHHhccCcCCcEeecccccccccccccCCCCcCcCceeEEecCchHHHHHHH
Confidence 345567777778788999888877778888889998886543 1 111111 223344
Q ss_pred HHHHHHhCCCcccEEEECCeEEecchHHHHH
Q 030613 126 KLLERLTGQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 126 ~~l~~~~g~~tvP~IfI~G~~iGG~del~~l 156 (174)
+.+ .+.+|+.|=.||-++.-+.|..+|.+.
T Consensus 131 dlV-~~~~W~~v~~iYD~d~gl~~lq~L~~~ 160 (400)
T cd06392 131 KLV-TELRWQKFIVFYDSEYDIRGLQSFLDQ 160 (400)
T ss_pred HHH-HhCCCcEEEEEEECcccHHHHHHHHHH
Confidence 544 445999998899666666666555443
No 386
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=28.98 E-value=2.1e+02 Score=24.20 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=42.7
Q ss_pred CCEEEEEe-CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHH-HHHHHHHHhCCCcccEEEECCeEEecchHH
Q 030613 82 NPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQ-LQKLLERLTGQHTVPNVFIGGKHIGGCTDT 153 (174)
Q Consensus 82 ~~Vviy~~-~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~-~~~~l~~~~g~~tvP~IfI~G~~iGG~del 153 (174)
.+++|.+. .....|.+|.+.|++.|++.+.+|+....+-+.+ +.+.+++. + .+ .+.-++...||+.+.
T Consensus 202 ~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t-~--~v-v~vEE~~~~gGlG~~ 271 (327)
T CHL00144 202 NDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKT-H--KV-LIVEECMKTGGIGAE 271 (327)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhh-C--cE-EEEECCCCCCCHHHH
Confidence 44555433 4568899999999999999999998776444443 34443332 1 22 333456667888553
No 387
>PRK12559 transcriptional regulator Spx; Provisional
Probab=28.64 E-value=66 Score=23.45 Aligned_cols=54 Identities=9% Similarity=-0.050 Sum_probs=30.7
Q ss_pred HHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchH
Q 030613 99 KLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 99 k~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~de 152 (174)
..++...+-.|....++...-..+++.+.+.+...--.-|.|..+|+.+-|+++
T Consensus 54 ~~lin~~~~~~k~l~~~~~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~iGf~~ 107 (131)
T PRK12559 54 TEIISTRSKTFQDLNINIEELSLNEFYKLIIEHPLMLRRPIMLDEKRLQIGFND 107 (131)
T ss_pred HHHHhcCcHHHHhCCCCcccCCHHHHHHHHHhCcceEeCCEEEeCCEEEEcCCH
Confidence 344444444455544443111224455555554344458999999999999975
No 388
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=28.62 E-value=1.5e+02 Score=23.60 Aligned_cols=64 Identities=25% Similarity=0.431 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHcCCCCeEEEecccCC-CcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhhC
Q 030613 94 YSSEVKLLFKRLGVEPLVIELDEMGP-QGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKG 160 (174)
Q Consensus 94 ~C~~ak~~L~~~~v~~~~vdid~~~~-~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~g 160 (174)
....+.+.+..++..+-..||+.+.. .+.. .+.+++......+|.+.=+| |+..+|+.++.+.|
T Consensus 142 ~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d-~eli~~i~~~~~~pvia~GG--i~s~ed~~~l~~~G 206 (221)
T TIGR00734 142 SLEEVRDFLNSFDYGLIVLDIHSVGTMKGPN-LELLTKTLELSEHPVMLGGG--ISGVEDLELLKEMG 206 (221)
T ss_pred cHHHHHHHHHhcCCEEEEEECCccccCCCCC-HHHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHCC
Confidence 45566777777776555557765321 1111 23344444455789777777 67888887765543
No 389
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=28.48 E-value=1.3e+02 Score=21.35 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=41.4
Q ss_pred CCCEEEEEeCC---ChhHHHHHHHHHHcCCCCeE-EEecccCCCcHHHHHHHHHHhCCCcccE--EEECCeEEecchHH
Q 030613 81 ENPVVVYSKTW---CSYSSEVKLLFKRLGVEPLV-IELDEMGPQGPQLQKLLERLTGQHTVPN--VFIGGKHIGGCTDT 153 (174)
Q Consensus 81 ~~~Vviy~~~~---Cp~C~~ak~~L~~~~v~~~~-vdid~~~~~~~~~~~~l~~~~g~~tvP~--IfI~G~~iGG~del 153 (174)
....++|.... ||.+..+--+|-++--.+.- ...-.. ..+....++..+|...+|. +|-+|+++|-...+
T Consensus 26 ~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv---~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 26 PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVV---ARAAERALAARFGVRRWPALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEE---EHHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESS
T ss_pred CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEE---CchhHHHHHHHhCCccCCeEEEEECCEEEEEecCe
Confidence 34466666644 57777766677765333311 111111 2456677778789999994 45599999977543
No 390
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=28.30 E-value=3.6e+02 Score=22.71 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=46.6
Q ss_pred chhHHHHHHHHhcCC-CEEEEEeCCChhHHHHHHHHHHcCCCCe--EEEecccCCCcH--HHHHHHHHHhCCCcccEEEE
Q 030613 68 GSRLEESVKKTVSEN-PVVVYSKTWCSYSSEVKLLFKRLGVEPL--VIELDEMGPQGP--QLQKLLERLTGQHTVPNVFI 142 (174)
Q Consensus 68 ~~~~~~~l~~~i~~~-~Vviy~~~~Cp~C~~ak~~L~~~~v~~~--~vdid~~~~~~~--~~~~~l~~~~g~~tvP~IfI 142 (174)
.++....|..+..-. .|.+|+ ..|.--+.+.......+++.. +.-.|.. .+.. ++......+.++..|-.|.|
T Consensus 62 a~~~~sDLe~l~~~t~~IR~Y~-sDCn~le~v~pAa~~~g~kv~lGiw~tdd~-~~~~~~til~ay~~~~~~d~v~~v~V 139 (305)
T COG5309 62 ADQVASDLELLASYTHSIRTYG-SDCNTLENVLPAAEASGFKVFLGIWPTDDI-HDAVEKTILSAYLPYNGWDDVTTVTV 139 (305)
T ss_pred HHHHHhHHHHhccCCceEEEee-ccchhhhhhHHHHHhcCceEEEEEeeccch-hhhHHHHHHHHHhccCCCCceEEEEe
Confidence 345555555554433 588899 667777777777777775432 1222321 0111 11222233457888889999
Q ss_pred CCeEEecc
Q 030613 143 GGKHIGGC 150 (174)
Q Consensus 143 ~G~~iGG~ 150 (174)
|.+.+-+-
T Consensus 140 GnEal~r~ 147 (305)
T COG5309 140 GNEALNRN 147 (305)
T ss_pred chhhhhcC
Confidence 99988654
No 391
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=28.01 E-value=3.3e+02 Score=23.16 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=35.6
Q ss_pred CCEEEEEeC---CChhHHHHHHHHHHcCCCCeEEE-ecccCCCcHHHHHHHHHHhCCCccc-EEEECC
Q 030613 82 NPVVVYSKT---WCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERLTGQHTVP-NVFIGG 144 (174)
Q Consensus 82 ~~Vviy~~~---~Cp~C~~ak~~L~~~~v~~~~vd-id~~~~~~~~~~~~l~~~~g~~tvP-~IfI~G 144 (174)
.+++|.+.+ ..+...++++.|++.|+++..++ +... +..+.+.+.+... .....- .|=|||
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~-p~~~~v~~~~~~~-~~~~~d~IIaiGG 90 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPN-PTEAAVEAGLAAY-RAGGCDGVIAFGG 90 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCC-CCHHHHHHHHHHH-HhcCCCEEEEeCC
Confidence 355555433 35678899999999998876654 4333 3444566655443 222233 333666
No 392
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=27.85 E-value=2.2e+02 Score=20.53 Aligned_cols=82 Identities=22% Similarity=0.360 Sum_probs=39.7
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCC--eEEEecccCC-CcHHHHHHHHHHhCCCcccEEEECCe------EEecchHH
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEP--LVIELDEMGP-QGPQLQKLLERLTGQHTVPNVFIGGK------HIGGCTDT 153 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~--~~vdid~~~~-~~~~~~~~l~~~~g~~tvP~IfI~G~------~iGG~del 153 (174)
+|++|.=.||.|-..=..=..+..++. ..|.|-=... +...+.+.+.. | .--|+|-|= +..|...
T Consensus 1 kIl~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~--G---ADGV~V~gC~~g~Ch~~~Gn~~- 74 (124)
T PF02662_consen 1 KILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEK--G---ADGVLVAGCHPGDCHYREGNYR- 74 (124)
T ss_pred CEEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHc--C---CCEEEEeCCCCCCCCcchhhHH-
Confidence 589999778877653222223333433 3333321101 23334444433 3 334566332 3333332
Q ss_pred HHHHhhCchHHHHHhccc
Q 030613 154 VKLYRKGELEPLLSEAKS 171 (174)
Q Consensus 154 ~~l~~~g~L~~~L~~~g~ 171 (174)
...+-..++++|++.|+
T Consensus 75 -a~~Rv~~~k~~L~~~Gi 91 (124)
T PF02662_consen 75 -AEKRVERLKKLLEELGI 91 (124)
T ss_pred -HHHHHHHHHHHHHHcCC
Confidence 22344667888888775
No 393
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=27.68 E-value=1.5e+02 Score=25.50 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=23.3
Q ss_pred HHHHHHhcC---CCEEEEEeCCChhH----HHHHHHHHHcCCCCeEEEecc
Q 030613 73 ESVKKTVSE---NPVVVYSKTWCSYS----SEVKLLFKRLGVEPLVIELDE 116 (174)
Q Consensus 73 ~~l~~~i~~---~~Vviy~~~~Cp~C----~~ak~~L~~~~v~~~~vdid~ 116 (174)
+.+.++++. ..||.+....|-.- ..+++.|++.|+++-.+|++.
T Consensus 311 ~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 311 KYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred HHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecC
Confidence 444444433 23555555556322 345666666677766666654
No 394
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=27.31 E-value=2.5e+02 Score=22.77 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=36.9
Q ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCe
Q 030613 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK 145 (174)
Q Consensus 83 ~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~ 145 (174)
.+++|+-++|+-..-++.+.++.+.++..+..... .....+.+.+... ..-..+|||.-
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~-~~~~~l~~~l~~~---~~~~vl~iDEi 90 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL-EKPGDLAAILTNL---EEGDVLFIDEI 90 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchh-cCchhHHHHHHhc---ccCCEEEEehH
Confidence 48899999999999999998888877655443221 1122333333332 23346777763
No 395
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=27.26 E-value=3.3e+02 Score=23.21 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=31.8
Q ss_pred CCEEEEEeC----CChhHHHHHHHHHHcCCCCeEE-EecccCCCcHHHHHHHHHH
Q 030613 82 NPVVVYSKT----WCSYSSEVKLLFKRLGVEPLVI-ELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 82 ~~Vviy~~~----~Cp~C~~ak~~L~~~~v~~~~v-did~~~~~~~~~~~~l~~~ 131 (174)
.+++|.+.. ..+...++++.|++.++++..+ ++... +..+.+.+.....
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~-p~~~~v~~~~~~~ 79 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPN-PTTTTVMEGAALA 79 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCC-CCHHHHHHHHHHH
Confidence 456666543 4678899999999999988755 34433 3445555554443
No 396
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.17 E-value=2.4e+02 Score=24.06 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=41.8
Q ss_pred CEEEEEeCC-----ChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEE-CCeEEecchHHHHH
Q 030613 83 PVVVYSKTW-----CSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFI-GGKHIGGCTDTVKL 156 (174)
Q Consensus 83 ~Vviy~~~~-----Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI-~G~~iGG~del~~l 156 (174)
.+.+|+.++ |+.|..+.-+++=.+-+..+ ++... .-.++....|.+.. +|+.|+|++++...
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~~~l~v-~~ssN-----------~~~s~sg~LP~l~~~ng~~va~~~~iv~~ 70 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAGAPLKV-VVSSN-----------PWRSPSGKLPYLITDNGTKVAGPVKIVQF 70 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhCCCcee-EeecC-----------CCCCCCCCCCeEEecCCceeccHHHHHHH
Confidence 355666644 99999999988877733332 22221 12234455998776 55999999987765
Q ss_pred Hhh
Q 030613 157 YRK 159 (174)
Q Consensus 157 ~~~ 159 (174)
.+.
T Consensus 71 L~k 73 (313)
T KOG3028|consen 71 LKK 73 (313)
T ss_pred HHH
Confidence 543
No 397
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=27.16 E-value=3e+02 Score=21.41 Aligned_cols=90 Identities=20% Similarity=0.330 Sum_probs=53.3
Q ss_pred CchhHHHHHHHHhcCCCEEEEEeC----CChhHHHHHHHHHHc-CCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEE
Q 030613 67 YGSRLEESVKKTVSENPVVVYSKT----WCSYSSEVKLLFKRL-GVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVF 141 (174)
Q Consensus 67 ~~~~~~~~l~~~i~~~~Vviy~~~----~Cp~C~~ak~~L~~~-~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~If 141 (174)
..+.+.+.+....+..+=++|.-. +=.+...+++.|+++ |.+...+++.. .++..+.+. ..=.||
T Consensus 16 ~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~----~~~~~~~l~------~ad~I~ 85 (212)
T cd03146 16 ALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD----TEDPLDALL------EADVIY 85 (212)
T ss_pred chHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC----cccHHHHHh------cCCEEE
Confidence 344566667776655554555432 235677889999999 88666555422 223233333 234688
Q ss_pred ECCeEEecchHHHHHHhhCchHHHHHhc
Q 030613 142 IGGKHIGGCTDTVKLYRKGELEPLLSEA 169 (174)
Q Consensus 142 I~G~~iGG~del~~l~~~g~L~~~L~~~ 169 (174)
+.| |....+.+..+.-.|.+.|++.
T Consensus 86 l~G---G~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 86 VGG---GNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred ECC---chHHHHHHHHHHcCHHHHHHHH
Confidence 877 6666655555555677777653
No 398
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=26.87 E-value=1.2e+02 Score=16.62 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=18.9
Q ss_pred CCeEEEecccCCCcHHHHHHHHHHhCCCccc
Q 030613 108 EPLVIELDEMGPQGPQLQKLLERLTGQHTVP 138 (174)
Q Consensus 108 ~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP 138 (174)
+..++..| ..++++..++++|...-|
T Consensus 4 ~p~vi~~d-----~~~Fr~lVQ~LTG~~~~~ 29 (31)
T PF05678_consen 4 PPTVIHTD-----PSNFRALVQRLTGAPSAP 29 (31)
T ss_pred CCEEEEeC-----HHHHHHHHHHhHCcCCCC
Confidence 34556665 468999999999987644
No 399
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=26.69 E-value=84 Score=22.67 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=19.4
Q ss_pred hCCCcccEEEECCeEE-ecchHHHHH
Q 030613 132 TGQHTVPNVFIGGKHI-GGCTDTVKL 156 (174)
Q Consensus 132 ~g~~tvP~IfI~G~~i-GG~del~~l 156 (174)
.|...+|-|.+|+++| .|-.|+.++
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~A 104 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVARA 104 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHHH
Confidence 4889999999988755 777776654
No 400
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.69 E-value=2.2e+02 Score=24.43 Aligned_cols=12 Identities=17% Similarity=0.373 Sum_probs=7.2
Q ss_pred cccEEEECCeEE
Q 030613 136 TVPNVFIGGKHI 147 (174)
Q Consensus 136 tvP~IfI~G~~i 147 (174)
.+|.+.|++.+.
T Consensus 343 GIP~L~iE~D~~ 354 (377)
T TIGR03190 343 GIPTLFLEFDIT 354 (377)
T ss_pred CCCEEEEecCCC
Confidence 566666666554
No 401
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=26.28 E-value=2e+02 Score=24.70 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=43.6
Q ss_pred CCCEEEE-EeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHH-HHHHHHHHhCCCcccEEEE-CCeEEecchHH
Q 030613 81 ENPVVVY-SKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQ-LQKLLERLTGQHTVPNVFI-GGKHIGGCTDT 153 (174)
Q Consensus 81 ~~~Vviy-~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~-~~~~l~~~~g~~tvP~IfI-~G~~iGG~del 153 (174)
..+++|. +.+.+..|.++.+.|++.|++...+++....+-+.+ +.+.+++ ... .|.+ ++...||+.+.
T Consensus 233 G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~---~~~--IvvvEE~~~~GGlG~~ 303 (355)
T PTZ00182 233 GKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKK---TGR--CVIVHEAPPTCGIGAE 303 (355)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhc---CCE--EEEEEeCCCCCCHHHH
Confidence 3455554 446678999999999999999999888765443433 3444332 122 3334 55566998653
No 402
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=26.28 E-value=68 Score=22.68 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=7.1
Q ss_pred CEEEEEeC---CChhHH
Q 030613 83 PVVVYSKT---WCSYSS 96 (174)
Q Consensus 83 ~Vviy~~~---~Cp~C~ 96 (174)
.+++|+.. .|+||.
T Consensus 7 ~~~~~t~~Cnl~C~yC~ 23 (139)
T PF13353_consen 7 RVVLFTNGCNLRCKYCF 23 (139)
T ss_dssp EEEEEEC--SB--TT-T
T ss_pred EEEEEcCcccccCcCcC
Confidence 47888653 378994
No 403
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=26.17 E-value=4.1e+02 Score=22.62 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=43.2
Q ss_pred hHHHHHHHHhcCCCEEEEEeCCC-hhHHHHHHHHHHcC--CCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeE
Q 030613 70 RLEESVKKTVSENPVVVYSKTWC-SYSSEVKLLFKRLG--VEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKH 146 (174)
Q Consensus 70 ~~~~~l~~~i~~~~Vviy~~~~C-p~C~~ak~~L~~~~--v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~ 146 (174)
+..+++++.. ...+.+....++ +.+.+-...|-+.+ .++-.+|+.+ -+.....+.++.+-.....|.|..++
T Consensus 70 ~~~sfvrk~k-~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ah--g~s~~~~~~i~~i~~~~p~~~vi~Gn-- 144 (321)
T TIGR01306 70 SRIPFIKDMQ-ERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAH--GHSNSVINMIKHIKTHLPDSFVIAGN-- 144 (321)
T ss_pred HHHHHHHhcc-ccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCcc--CchHHHHHHHHHHHHhCCCCEEEEec--
Confidence 4445555543 333444444444 44534444444445 4666666654 25566666666653322334444443
Q ss_pred EecchHHHHHHhhC
Q 030613 147 IGGCTDTVKLYRKG 160 (174)
Q Consensus 147 iGG~del~~l~~~g 160 (174)
|+..++.+.+.+.|
T Consensus 145 V~t~e~a~~l~~aG 158 (321)
T TIGR01306 145 VGTPEAVRELENAG 158 (321)
T ss_pred CCCHHHHHHHHHcC
Confidence 35666666555544
No 404
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=25.67 E-value=59 Score=28.50 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=12.0
Q ss_pred HHHHHHHhCCC--cccEEEECCeE
Q 030613 125 QKLLERLTGQH--TVPNVFIGGKH 146 (174)
Q Consensus 125 ~~~l~~~~g~~--tvP~IfI~G~~ 146 (174)
....+.++|.. -||+|||||.|
T Consensus 62 ~~F~~YYsge~~APVlTIFIGGNH 85 (456)
T KOG2863|consen 62 GDFYKYYSGEIKAPVLTIFIGGNH 85 (456)
T ss_pred HHHHHHhCCcccCceeEEEecCch
Confidence 44444455543 36677777653
No 405
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=25.44 E-value=2.1e+02 Score=24.22 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=36.5
Q ss_pred chhHHHHHHHHhcCCCEEEEEeCCChhHHHH-HHHHHHcCCCCeEEEecc
Q 030613 68 GSRLEESVKKTVSENPVVVYSKTWCSYSSEV-KLLFKRLGVEPLVIELDE 116 (174)
Q Consensus 68 ~~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~a-k~~L~~~~v~~~~vdid~ 116 (174)
.....+.+++++...+.+||... |+-+.+. -.+|+.+..++-++-+|+
T Consensus 38 ~~~~~~~~~~~f~~~d~iIfI~A-~GIaVR~IAP~l~dK~~DPaVvvvDe 86 (315)
T PRK05788 38 YEGFADAFEEAFGCYDALIFIMA-TGIAVRVIAPLLKDKWSDPAVVVVDE 86 (315)
T ss_pred cCCHHHHHHHHHhcCCeEEEEEC-hHHHHHHhchhhhccCcCCCEEEEeC
Confidence 45678899999999999998876 6655444 567777777777777775
No 406
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.17 E-value=4.3e+02 Score=22.52 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=41.2
Q ss_pred HHhcCCCEEEEEeCCC-hhH-HHHHHHHHH-cCCCCeEEEecccCCCcHHHHHHHHHHhCCCccc-EEEECCeEEecchH
Q 030613 77 KTVSENPVVVYSKTWC-SYS-SEVKLLFKR-LGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP-NVFIGGKHIGGCTD 152 (174)
Q Consensus 77 ~~i~~~~Vviy~~~~C-p~C-~~ak~~L~~-~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP-~IfI~G~~iGG~de 152 (174)
+..+...+.+-...++ +.. .++..+++. .++++-.+|+.. .+...+++.++++- ..+| +.+|.|+ |+..++
T Consensus 79 r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~--gh~~~~~e~I~~ir--~~~p~~~vi~g~-V~t~e~ 153 (326)
T PRK05458 79 KDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAH--GHSDSVINMIQHIK--KHLPETFVIAGN-VGTPEA 153 (326)
T ss_pred HhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC--CchHHHHHHHHHHH--hhCCCCeEEEEe-cCCHHH
Confidence 3344445555444554 455 455555543 234666666665 46677788777763 3455 3344442 445555
Q ss_pred HHHHHhh
Q 030613 153 TVKLYRK 159 (174)
Q Consensus 153 l~~l~~~ 159 (174)
.+.+.+.
T Consensus 154 a~~l~~a 160 (326)
T PRK05458 154 VRELENA 160 (326)
T ss_pred HHHHHHc
Confidence 5554443
No 407
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=24.66 E-value=1.2e+02 Score=21.88 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHH
Q 030613 93 SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 93 p~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~ 157 (174)
....-+.++|+++|.+...+.+-.+ +.+.+.+.+........+ .|..+|.-+|-.|-+.+..
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~~v~D--d~~~i~~~l~~~~~~~D~-VittGG~g~~~~D~t~~a~ 78 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYGIVPD--DPDAIKEALRRALDRADL-VITTGGTGPGPDDVTPEAL 78 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEES--SHHHHHHHHHHHHHTTSE-EEEESSSSSSTTCHHHHHH
T ss_pred hHHHHHHHHHHHcCCeeeEEEEECC--CHHHHHHHHHhhhccCCE-EEEcCCcCcccCCcccHHH
Confidence 3445678899999987666665543 566778877665333333 5667888777777666554
No 408
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=24.37 E-value=3.7e+02 Score=21.91 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCe
Q 030613 94 YSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK 145 (174)
Q Consensus 94 ~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~ 145 (174)
.+..+.+++...|.+|-.+|..+-.-+..++.+.+.........|.|-|-+.
T Consensus 28 ~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 28 ANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred CCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 4457888999999999999998754455666776666656667777777553
No 409
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=24.23 E-value=4e+02 Score=22.83 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=30.7
Q ss_pred CCEEEEEeC----CChhHHHHHHHHHHcCCCCeEEE-ecccCCCcHHHHHHHHHH
Q 030613 82 NPVVVYSKT----WCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 82 ~~Vviy~~~----~Cp~C~~ak~~L~~~~v~~~~vd-id~~~~~~~~~~~~l~~~ 131 (174)
.+++|.+.+ .++...+++..|++.++++..++ +... +..+.+.+..+..
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~-p~~~~v~~~~~~~ 80 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPN-PTVDQVDEAAKLG 80 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCC-CCHHHHHHHHHHH
Confidence 356655543 37778999999999999876653 4332 3344455554443
No 410
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.00 E-value=2.2e+02 Score=18.62 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=46.7
Q ss_pred hhHHHHHHHHhcCCCE-EEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCe
Q 030613 69 SRLEESVKKTVSENPV-VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGK 145 (174)
Q Consensus 69 ~~~~~~l~~~i~~~~V-viy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~ 145 (174)
+...+.+...++...+ .+.. +..=.++...+.+...+.-.+|+.....++.++-+.++.. + +..|.|++.++
T Consensus 8 ~~~~~~l~~~l~~~~~~~v~~---~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~-~-~~~~ii~~t~~ 80 (112)
T PF00072_consen 8 PEIRELLEKLLERAGYEEVTT---ASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQI-N-PSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE---ESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHH-T-TTSEEEEEESS
T ss_pred HHHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHhcccCceEEEEEeeeccccccccccccccc-c-ccccEEEecCC
Confidence 3455666677776666 5554 4456788888888887777777765323444555555554 3 78998888653
No 411
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=23.76 E-value=58 Score=22.34 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=21.3
Q ss_pred HHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCC
Q 030613 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEP 109 (174)
Q Consensus 75 l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~ 109 (174)
+++.... ++..|..|+..+-..+.+++.+.|++|
T Consensus 89 l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 89 LEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 3343333 666777777777778888888877654
No 412
>PLN02880 tyrosine decarboxylase
Probab=23.69 E-value=2.3e+02 Score=25.39 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=43.4
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCC---CeEEEeccc---CCCcHHHHHHHHHHhCCCcccEEEE---CCeEEecchH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVE---PLVIELDEM---GPQGPQLQKLLERLTGQHTVPNVFI---GGKHIGGCTD 152 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~---~~~vdid~~---~~~~~~~~~~l~~~~g~~tvP~IfI---~G~~iGG~de 152 (174)
.+++||....+.+|.. +.+.-+|+. ...|.+|.. .=+...+++.+.+.......|.+.| |-...|.+|+
T Consensus 180 ~~~vv~~S~~aH~Sv~--Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp 257 (490)
T PLN02880 180 EKLVVYASDQTHSALQ--KACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP 257 (490)
T ss_pred CCeEEEEcCCchHHHH--HHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc
Confidence 4688998888887743 333334443 345555421 0145667777766544455776655 4556788888
Q ss_pred HHHH
Q 030613 153 TVKL 156 (174)
Q Consensus 153 l~~l 156 (174)
+.++
T Consensus 258 l~eI 261 (490)
T PLN02880 258 LLEL 261 (490)
T ss_pred HHHH
Confidence 8654
No 413
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.64 E-value=1.2e+02 Score=21.32 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=42.5
Q ss_pred CCCEEEEEe-CCChhHHHHHHHHHHcCCCCeEEEecccCCCc-HHHHHHHHHHhCCCcccEEEECCeEEecchH
Q 030613 81 ENPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQG-PQLQKLLERLTGQHTVPNVFIGGKHIGGCTD 152 (174)
Q Consensus 81 ~~~Vviy~~-~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~-~~~~~~l~~~~g~~tvP~IfI~G~~iGG~de 152 (174)
..+|+|.+. +....|.+|.+.|++.|++...+++....+-+ +.+.+.+++.. .+ .++-++...||+..
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~---~v-vvvee~~~~gg~g~ 78 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTG---RV-VVVEEHYKIGGLGS 78 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHH---HH-HHSETCESEEEEHS
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhc---cc-cccccccccccHHH
Confidence 445666655 55789999999999999998888776543333 33344343321 11 23446666788753
No 414
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=23.61 E-value=44 Score=27.44 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=14.7
Q ss_pred EEEEEeCCChhHHHH----HHHHHHcC
Q 030613 84 VVVYSKTWCSYSSEV----KLLFKRLG 106 (174)
Q Consensus 84 Vviy~~~~Cp~C~~a----k~~L~~~~ 106 (174)
|+.-+..|||+|... --.|.+.|
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcC
Confidence 444466899999854 34455555
No 415
>PLN02645 phosphoglycolate phosphatase
Probab=23.57 E-value=4.3e+02 Score=21.88 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhcCCC-EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHH
Q 030613 69 SRLEESVKKTVSENP-VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 69 ~~~~~~l~~~i~~~~-Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~ 131 (174)
+...+.++.+.+... +++.+...........+-|+++|+++..-+|-. ........++..
T Consensus 47 ~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~t---s~~~~~~~l~~~ 107 (311)
T PLN02645 47 EGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFS---SSFAAAAYLKSI 107 (311)
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEee---hHHHHHHHHHhh
Confidence 445777777766555 444444344455666667788998765544433 234455666553
No 416
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=23.21 E-value=2.1e+02 Score=22.36 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCC-CeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHhhC
Q 030613 97 EVKLLFKRLGVE-PLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKG 160 (174)
Q Consensus 97 ~ak~~L~~~~v~-~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~~g 160 (174)
.+.+.+.+.|++ ..+.|++........-.+.+++......+|.+. +| .|...++++++.+.|
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~-~G-GI~~~ed~~~~~~~G 96 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQV-GG-GIRSLETVEALLDAG 96 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEE-cC-CcCCHHHHHHHHHcC
Confidence 333445556665 355566543111111122233222223466444 44 456666666665544
No 417
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=22.71 E-value=4.9e+02 Score=23.45 Aligned_cols=88 Identities=15% Similarity=0.265 Sum_probs=54.4
Q ss_pred chhHHHHHHHHhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEE
Q 030613 68 GSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHI 147 (174)
Q Consensus 68 ~~~~~~~l~~~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~i 147 (174)
.......+...+.... |....+..-..+...+.+........|+....-++-++-+.+++. .+.+|+|.+-|.
T Consensus 13 d~~ir~~l~~~L~~~G---~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~--~~~~pVI~~Tg~-- 85 (464)
T COG2204 13 DPDIRELLEQALELAG---YEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSR--DPDLPVIVMTGH-- 85 (464)
T ss_pred CHHHHHHHHHHHHHcC---CeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhh--CCCCCEEEEeCC--
Confidence 3455666666666554 222335556777778877754555667765323555666666654 488999999875
Q ss_pred ecchHHHHHHhhCch
Q 030613 148 GGCTDTVKLYRKGEL 162 (174)
Q Consensus 148 GG~del~~l~~~g~L 162 (174)
|..+...++.+.|-.
T Consensus 86 g~i~~AV~A~k~GA~ 100 (464)
T COG2204 86 GDIDTAVEALRLGAF 100 (464)
T ss_pred CCHHHHHHHHhcCcc
Confidence 566666666666543
No 418
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.57 E-value=4.3e+02 Score=22.55 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=30.5
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHHcCCCCeEEE-ecccCCCcHHHHHHHHHH
Q 030613 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 82 ~~Vviy~~~~---Cp~C~~ak~~L~~~~v~~~~vd-id~~~~~~~~~~~~l~~~ 131 (174)
.++.|.+... .++..+++..|++.++++..++ +... +....+.+.+...
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~-p~~~~v~~~~~~~ 81 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPN-PRDEEVMAGAELY 81 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCC-CCHHHHHHHHHHH
Confidence 4555555443 3578899999999998876654 4332 3445566655443
No 419
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=22.57 E-value=1e+02 Score=22.23 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=19.1
Q ss_pred hCCCcccEEEECCeEE-ecchHHHHH
Q 030613 132 TGQHTVPNVFIGGKHI-GGCTDTVKL 156 (174)
Q Consensus 132 ~g~~tvP~IfI~G~~i-GG~del~~l 156 (174)
.|..++|-|.+|+++| .|--|+.++
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV~~A 105 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDVARA 105 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccHHHH
Confidence 4889999999999865 666665544
No 420
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=22.51 E-value=4.5e+02 Score=22.39 Aligned_cols=49 Identities=8% Similarity=0.176 Sum_probs=30.7
Q ss_pred CCEEEEEeCC---ChhHHHHHHHHHHcCCCCeEEE-ecccCCCcHHHHHHHHHH
Q 030613 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLERL 131 (174)
Q Consensus 82 ~~Vviy~~~~---Cp~C~~ak~~L~~~~v~~~~vd-id~~~~~~~~~~~~l~~~ 131 (174)
.+++|.+... .++..++...|++.++++..++ +... +..+.+.+.+...
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~-p~~~~v~~~~~~~ 76 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSE-PTDESVEEGVKLA 76 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCC-cCHHHHHHHHHHH
Confidence 3566555432 5688899999999999876654 3332 3444555555443
No 421
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=22.13 E-value=3e+02 Score=20.65 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=29.6
Q ss_pred HHHHHHHhcCC-CEEEEEeCCCh--hHHHHHHHHHHcCCCCeEEEecc
Q 030613 72 EESVKKTVSEN-PVVVYSKTWCS--YSSEVKLLFKRLGVEPLVIELDE 116 (174)
Q Consensus 72 ~~~l~~~i~~~-~Vviy~~~~Cp--~C~~ak~~L~~~~v~~~~vdid~ 116 (174)
.+.+.+.++.. .|.+.+.+.-| +..++-++|.++| |+++.|..
T Consensus 6 ~~~i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~G--Y~ViPVNP 51 (140)
T COG1832 6 EEDIAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKG--YRVIPVNP 51 (140)
T ss_pred HHHHHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCC--CEEEeeCc
Confidence 34555666544 46677776655 6789999999999 56666654
No 422
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=22.01 E-value=2.6e+02 Score=19.63 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=26.7
Q ss_pred HhcCCCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEec
Q 030613 78 TVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (174)
Q Consensus 78 ~i~~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid 115 (174)
+-+..+|++|-......+..+..+|+.+|++ .+.++
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~ 118 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLE 118 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeC
Confidence 3455679999876677788888999999974 55554
No 423
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=21.75 E-value=75 Score=22.33 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=14.3
Q ss_pred CCCcccEEEECCeEEecch
Q 030613 133 GQHTVPNVFIGGKHIGGCT 151 (174)
Q Consensus 133 g~~tvP~IfI~G~~iGG~d 151 (174)
+....=++||||.++|.+-
T Consensus 60 g~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 60 GNAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp STTEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEECCEEeeeec
Confidence 3444459999999999864
No 424
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=51 Score=27.60 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=11.5
Q ss_pred EEEEeCCChhHHHHHHHH
Q 030613 85 VVYSKTWCSYSSEVKLLF 102 (174)
Q Consensus 85 viy~~~~Cp~C~~ak~~L 102 (174)
++=-++.||||++-.++=
T Consensus 266 ivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 266 IVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred eecCCCCCchHHHHhhHh
Confidence 333447899998754443
No 425
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.69 E-value=4.5e+02 Score=22.72 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=37.1
Q ss_pred CchhHHHHHHHHhcC---CCEEEEEeCC---ChhHHHHHHHHHHcCCCCeEEE-ecccCCCcHHHHHHHHH
Q 030613 67 YGSRLEESVKKTVSE---NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (174)
Q Consensus 67 ~~~~~~~~l~~~i~~---~~Vviy~~~~---Cp~C~~ak~~L~~~~v~~~~vd-id~~~~~~~~~~~~l~~ 130 (174)
++....+.+-+.++. .+++|++... .+...+++..|++.|+++..++ +... +..+.+.+.++.
T Consensus 32 fG~g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~-P~~~~v~~~~~~ 101 (395)
T PRK15454 32 CGPGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGE-PCITDVCAAVAQ 101 (395)
T ss_pred ECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCC-cCHHHHHHHHHH
Confidence 343344444443332 4566666543 5778999999999999887663 4332 334445555544
No 426
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=21.68 E-value=5e+02 Score=21.99 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=28.4
Q ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCCeEEE-ecccCCCcHHHHHHHHH
Q 030613 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (174)
Q Consensus 82 ~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vd-id~~~~~~~~~~~~l~~ 130 (174)
.+++|.+......-..++..|++.++++..++ +... +..+.+.+....
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-p~~~~v~~~~~~ 72 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPN-PDLEDLAAGIRL 72 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCC-cCHHHHHHHHHH
Confidence 45666665555455678888998887765543 4332 234445554433
No 427
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=21.63 E-value=2.4e+02 Score=25.00 Aligned_cols=61 Identities=20% Similarity=0.390 Sum_probs=39.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccC-----CCcHHHHHHHHHHhC---CCccc-EEEECC
Q 030613 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG-----PQGPQLQKLLERLTG---QHTVP-NVFIGG 144 (174)
Q Consensus 84 Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~-----~~~~~~~~~l~~~~g---~~tvP-~IfI~G 144 (174)
+.||+-++|+-.--++.+..+.|+++..++..... +....+++.+..... ...-| +||||.
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 56788899999999999999999998777544321 112234555543321 23346 567775
No 428
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.43 E-value=4e+02 Score=20.75 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=43.2
Q ss_pred CCchhHHHHHHHHhcC-CCEEEEEeCCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECC
Q 030613 66 SYGSRLEESVKKTVSE-NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 66 ~~~~~~~~~l~~~i~~-~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
...++.++.+.++... -+++|.+. .-=.++..+.+.++++|-..=-. +-...++++++++ +.+.=-++.||+
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSN---n~e~RV~~~~~~l~v~fi~~A~K---P~~~~fr~Al~~m-~l~~~~vvmVGD 118 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSN---NKESRVARAAEKLGVPFIYRAKK---PFGRAFRRALKEM-NLPPEEVVMVGD 118 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeC---CCHHHHHhhhhhcCCceeecccC---ccHHHHHHHHHHc-CCChhHEEEEcc
Confidence 4567888888887655 34555553 34457777777777776544333 2456667777766 332222555665
Q ss_pred e
Q 030613 145 K 145 (174)
Q Consensus 145 ~ 145 (174)
+
T Consensus 119 q 119 (175)
T COG2179 119 Q 119 (175)
T ss_pred h
Confidence 4
No 429
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=21.23 E-value=76 Score=22.48 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=13.6
Q ss_pred CcccEEEECCeEEecch
Q 030613 135 HTVPNVFIGGKHIGGCT 151 (174)
Q Consensus 135 ~tvP~IfI~G~~iGG~d 151 (174)
.-.|.||.||+.||=-+
T Consensus 80 ECTplvF~n~~LvgWG~ 96 (102)
T PF11399_consen 80 ECTPLVFKNGKLVGWGD 96 (102)
T ss_pred ceEEEEEECCEEEEEcH
Confidence 35899999999987443
No 430
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=21.18 E-value=89 Score=22.34 Aligned_cols=62 Identities=11% Similarity=0.315 Sum_probs=34.0
Q ss_pred CCCEEEEEeCCChhHHHHHHHHHHcCCCCe-EEEecccCCCcHHHHHHHHHH-hCCCcccEEEECCe
Q 030613 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPL-VIELDEMGPQGPQLQKLLERL-TGQHTVPNVFIGGK 145 (174)
Q Consensus 81 ~~~Vviy~~~~Cp~C~~ak~~L~~~~v~~~-~vdid~~~~~~~~~~~~l~~~-~g~~tvP~IfI~G~ 145 (174)
..+|++--.-.|+|..+++. ..+.|...- +++.+.. .......+...- ....++|.++|..+
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII~n~~~~--~~~~~~~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 34 NGNIALIERGGCSFLTKAIN-AQKAGALAVIITDVNND--SDEYYVEMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCC--ccccceEecCCCCCCCceEEEEEecHH
Confidence 35688888888999999887 556665543 3343321 110000010110 12347899998763
No 431
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=21.02 E-value=2.7e+02 Score=24.09 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHHHHHHh
Q 030613 94 YSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDTVKLYR 158 (174)
Q Consensus 94 ~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del~~l~~ 158 (174)
....+..+|+++|.+...+.+-. ++.+.+.+.+++......+ .|..+|.-+|..|-+.+..+
T Consensus 196 n~~~l~~~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~a~~~~Dl-iittGG~s~g~~D~~~~al~ 257 (394)
T cd00887 196 NSYMLAALLRELGAEVVDLGIVP--DDPEALREALEEALEEADV-VITSGGVSVGDYDFVKEVLE 257 (394)
T ss_pred hHHHHHHHHHHCCCEEEEeceeC--CCHHHHHHHHHHHhhCCCE-EEEeCCCCCCcchhHHHHHH
Confidence 34467888999987766555544 3556778888776433333 56679998998887776554
No 432
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=20.98 E-value=4.4e+02 Score=22.67 Aligned_cols=48 Identities=6% Similarity=0.131 Sum_probs=29.6
Q ss_pred CCEEEEEeC---CChhHHHHHHHHHHcCCCCeEEE-ecccCCCcHHHHHHHHH
Q 030613 82 NPVVVYSKT---WCSYSSEVKLLFKRLGVEPLVIE-LDEMGPQGPQLQKLLER 130 (174)
Q Consensus 82 ~~Vviy~~~---~Cp~C~~ak~~L~~~~v~~~~vd-id~~~~~~~~~~~~l~~ 130 (174)
.+++|.+.. .++...+++..|++.++.+..++ +... +..+.+.+....
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~n-p~~~~v~~~~~~ 83 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPN-PTTENVAAGLKL 83 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCC-cCHHHHHHHHHH
Confidence 455555443 36788899999999998765553 3332 344555555444
No 433
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.94 E-value=56 Score=20.72 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=10.1
Q ss_pred CCChhHHHHHHHH
Q 030613 90 TWCSYSSEVKLLF 102 (174)
Q Consensus 90 ~~Cp~C~~ak~~L 102 (174)
|-||.|+++.+-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 4599999987654
No 434
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=20.88 E-value=1.2e+02 Score=17.47 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=17.8
Q ss_pred EEECCeEEecc--hHHHHHHhhCchH
Q 030613 140 VFIGGKHIGGC--TDTVKLYRKGELE 163 (174)
Q Consensus 140 IfI~G~~iGG~--del~~l~~~g~L~ 163 (174)
+..||+..|=+ ++++++.++|+|.
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCC
Confidence 34588888876 5678888888775
No 435
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.81 E-value=5.1e+02 Score=21.76 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=6.9
Q ss_pred CchhHHHHHHHHhcC
Q 030613 67 YGSRLEESVKKTVSE 81 (174)
Q Consensus 67 ~~~~~~~~l~~~i~~ 81 (174)
-.+.+++.+++.|+.
T Consensus 131 ~~p~IKE~vR~~I~~ 145 (284)
T PF07894_consen 131 GQPHIKEVVRRMIQQ 145 (284)
T ss_pred CCCCHHHHHHHHHHH
Confidence 334444444444444
No 436
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.74 E-value=1.8e+02 Score=23.02 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.6
Q ss_pred CCCcccEEEECCeEEecchHHHHH
Q 030613 133 GQHTVPNVFIGGKHIGGCTDTVKL 156 (174)
Q Consensus 133 g~~tvP~IfI~G~~iGG~del~~l 156 (174)
|.-..|++|++++..-|.|.|..+
T Consensus 173 GvfGaPtfivg~q~fwGqDRL~~l 196 (203)
T COG3917 173 GVFGAPTFIVGDQLFWGQDRLYQL 196 (203)
T ss_pred CccCCCeEEECCeeeechhHHHHH
Confidence 777899999999999999977543
No 437
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=20.62 E-value=1.5e+02 Score=19.18 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=14.8
Q ss_pred CCcccEEEECCeEEecch
Q 030613 134 QHTVPNVFIGGKHIGGCT 151 (174)
Q Consensus 134 ~~tvP~IfI~G~~iGG~d 151 (174)
-..-|.+.|+|+.++..+
T Consensus 44 C~~gP~v~V~~~~~~~~t 61 (72)
T cd03082 44 CERAPAALVGQRPVDGAT 61 (72)
T ss_pred cCCCCeEEECCEEeCCcC
Confidence 456899999999988874
No 438
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=20.43 E-value=3.6e+02 Score=25.17 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=44.7
Q ss_pred CCEEEEEe-CCChhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECCeEEecchHH
Q 030613 82 NPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGGKHIGGCTDT 153 (174)
Q Consensus 82 ~~Vviy~~-~~Cp~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G~~iGG~del 153 (174)
..++|.+. +....|.+|.+.|++.|++.++|++....+-+.+....+.+ .....+.+.+...||+...
T Consensus 505 ~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i~sv~k----~~~vvvveE~~~~gG~g~~ 573 (641)
T PRK12571 505 PDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVR----HHIVVIVEEQGAMGGFGAH 573 (641)
T ss_pred CCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHHHHHhh----hCCEEEEECCCCCCCHHHH
Confidence 45666554 45688999999999999999999986543444443333322 1245666666667888653
No 439
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=20.40 E-value=3.8e+02 Score=20.10 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCccc-EEEECCeEEecchHHHHHH
Q 030613 95 SSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVP-NVFIGGKHIGGCTDTVKLY 157 (174)
Q Consensus 95 C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP-~IfI~G~~iGG~del~~l~ 157 (174)
-.-+..+|++.|.+...+.+-. ++.+.+++.+++.......= .|..||.-+|..|-+.+..
T Consensus 24 ~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal 85 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADRAIVK--DDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEAL 85 (163)
T ss_pred HHHHHHHHHHCCCeEEEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHH
Confidence 3456778889998766665544 35566778777653212233 4455888888887665554
No 440
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.11 E-value=4.8e+02 Score=21.14 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHcCCCCeEEEecccCCCcHHHHHHHHHHhCCCcccEEEECC
Q 030613 93 SYSSEVKLLFKRLGVEPLVIELDEMGPQGPQLQKLLERLTGQHTVPNVFIGG 144 (174)
Q Consensus 93 p~C~~ak~~L~~~~v~~~~vdid~~~~~~~~~~~~l~~~~g~~tvP~IfI~G 144 (174)
-.+..+-+++...|.+|-.+|..+-.-+..++...+.........|.|-|-+
T Consensus 20 ~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 20 LGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred CCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 4455788889999999999998875335556677776655566677777755
No 441
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=20.06 E-value=4.9e+02 Score=21.29 Aligned_cols=95 Identities=14% Similarity=0.256 Sum_probs=52.3
Q ss_pred HHHHHHhc---CCCEEEEEeCCChh-H----HHHHHHHHHcCCC-CeEEEecccCCCcHHHHHHHHHH--hCCCcccEEE
Q 030613 73 ESVKKTVS---ENPVVVYSKTWCSY-S----SEVKLLFKRLGVE-PLVIELDEMGPQGPQLQKLLERL--TGQHTVPNVF 141 (174)
Q Consensus 73 ~~l~~~i~---~~~Vviy~~~~Cp~-C----~~ak~~L~~~~v~-~~~vdid~~~~~~~~~~~~l~~~--~g~~tvP~If 141 (174)
+.++..+- ...++||...+-.+ . ....-+|++.|.. .....+... +.-+.+-+.|.+. .+..-.|..+
T Consensus 125 ~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~y-P~~d~vi~~l~~~~~~~v~L~PlMl 203 (265)
T COG4822 125 EAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGY-PLVDTVIEYLRKNGIKEVHLIPLML 203 (265)
T ss_pred HHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCC-CcHHHHHHHHHHcCCceEEEeeeEE
Confidence 44444443 55688887655322 1 1234556777774 344456555 4555666666553 2345589999
Q ss_pred ECCeEEecchHHHHHHhhCchHHHHHhccc
Q 030613 142 IGGKHIGGCTDTVKLYRKGELEPLLSEAKS 171 (174)
Q Consensus 142 I~G~~iGG~del~~l~~~g~L~~~L~~~g~ 171 (174)
+-|+|.--- .+-.....+...|+++|.
T Consensus 204 vAG~Ha~nD---Masddedswk~il~~~G~ 230 (265)
T COG4822 204 VAGDHAKND---MASDDEDSWKNILEKNGF 230 (265)
T ss_pred eechhhhhh---hcccchHHHHHHHHhCCc
Confidence 988765211 011133556677777664
Done!