BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030614
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 284 bits (727), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/172 (85%), Positives = 153/172 (88%), Gaps = 4/172 (2%)
Query: 1 MLQCIEGFKHLFASLLQCCDTN---PSRGLEDPEILARETVFSVSEIEALYELFKKISSA 57
M QC++G KHL S+L C D + S GL DPE+LAR+TVFSVSEIEALYELFKKISSA
Sbjct: 1 MSQCVDGIKHLCTSVLGCFDLDLYKQSGGLGDPELLARDTVFSVSEIEALYELFKKISSA 60
Query: 58 VIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPI 117
VIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPI
Sbjct: 61 VIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPI 120
Query: 118 DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169
DDKI FSFQLYDLKQQG FIERQEVKQMVVATLAESGMNL D VIE IIDK
Sbjct: 121 DDKIHFSFQLYDLKQQG-FIERQEVKQMVVATLAESGMNLKDTVIEDIIDKT 171
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 85 DRVFDLFDTKHNGILGFEEFARALSVFHPN 114
D+ F+ DTKH+G + EE+ R+L + HP+
Sbjct: 169 DKTFEEADTKHDGKIDKEEW-RSLVLRHPS 197
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 262 bits (669), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 133/141 (94%), Positives = 135/141 (95%), Gaps = 1/141 (0%)
Query: 29 DPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVF 88
DPE+LAR+TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVF
Sbjct: 1 DPELLARDTVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVF 60
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148
DLFDTKHNGILGFEEFARALSVFHPNAPIDDKI FSFQLYDLKQQG FIERQEVKQMVVA
Sbjct: 61 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQG-FIERQEVKQMVVA 119
Query: 149 TLAESGMNLSDDVIETIIDKV 169
TLAESGMNL D VIE IIDK
Sbjct: 120 TLAESGMNLKDTVIEDIIDKT 140
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 85 DRVFDLFDTKHNGILGFEEFARALSVFHPN 114
D+ F+ DTKH+G + EE+ R+L + HP+
Sbjct: 138 DKTFEEADTKHDGKIDKEEW-RSLVLRHPS 166
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 189 bits (480), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 120/143 (83%), Gaps = 1/143 (0%)
Query: 26 GLEDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFAD 85
G EDPE+LA T F+V E+EALYELFKK+SS++IDDGLI+KEEFQLALF+ + +LFAD
Sbjct: 18 GYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFAD 77
Query: 86 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQM 145
R+FD+FD K NG++ F EF R+L VFHP+AP+ +K++F+F+LYDL+Q G FIER+E+K+M
Sbjct: 78 RIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTG-FIEREELKEM 136
Query: 146 VVATLAESGMNLSDDVIETIIDK 168
VVA L ES + LS+D+IE ++DK
Sbjct: 137 VVALLHESELVLSEDMIEVMVDK 159
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 120/143 (83%), Gaps = 1/143 (0%)
Query: 26 GLEDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFAD 85
G EDPE+LA T F+V E+EALYELFKK+SS++IDDGLI+KEEFQLALF+ + +LFAD
Sbjct: 18 GYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFAD 77
Query: 86 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQM 145
R+FD+FD K NG++ F EF R+L VFHP+AP+ +K++F+F+LYDL+Q G FIER+E+K+M
Sbjct: 78 RIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTG-FIEREELKEM 136
Query: 146 VVATLAESGMNLSDDVIETIIDK 168
VVA L ES + LS+D+IE ++DK
Sbjct: 137 VVALLHESELVLSEDMIEVMVDK 159
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 28 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFAD 85
E E L +T F+ E++ LY FK + G++N+E F+ A F + S +A
Sbjct: 37 EGLEQLEAQTNFTKRELQVLYRGFKNECPS----GVVNEETFKQIYAQFFPHGDASTYAH 92
Query: 86 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQM 145
+F+ FDT G + FE+F ALS+ + +K+ ++F LYD+ + G +I ++E+ +
Sbjct: 93 YLFNAFDTTQTGSVKFEDFVTALSIL-LRGTVHEKLRWTFNLYDINKDG-YINKEEMMDI 150
Query: 146 VVA 148
V A
Sbjct: 151 VKA 153
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVF 88
E+L ++ F+ E++ LY FK + G++N+E F+ + F + +A +F
Sbjct: 53 ELLEAQSKFTKKELQILYRGFKNECPS----GVVNEETFKEIYSQFFPQGDSTTYAHFLF 108
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQ 140
+ FDT HNG + FE+F + LS+ + +K+ ++F LYD+ + G+ + +
Sbjct: 109 NAFDTDHNGAVSFEDFIKGLSIL-LRGTVQEKLNWAFNLYDINKDGYITKEE 159
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 8/120 (6%)
Query: 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVF 88
E L +T F+ E++ LY FK + G++N+E F+ A F + S +A +F
Sbjct: 7 EQLEAQTNFTKRELQVLYRGFKNEXPS----GVVNEETFKQIYAQFFPHGDASTYAHYLF 62
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148
+ FDT G + FE+F ALS+ + +K+ ++F LYD+ + G +I ++E+ +V A
Sbjct: 63 NAFDTTQTGSVKFEDFVTALSIL-LRGTVHEKLRWTFNLYDINKDG-YINKEEMMDIVKA 120
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 33 LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDL 90
L R T F E++ Y+ F K + G +NK EFQ F S FA+ VF++
Sbjct: 16 LVRSTRFDKKELQQWYKGFFKDCPS----GHLNKSEFQKIYKQFFPFGDPSAFAEYVFNV 71
Query: 91 FDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150
FD NG + F+EF ALSV ++DK+ ++FQLYDL G I E+ ++V A
Sbjct: 72 FDADKNGYIDFKEFICALSV-TSRGELNDKLIWAFQLYDLDNNG-LISYDEMLRIVDAIY 129
Query: 151 AESG 154
G
Sbjct: 130 KMVG 133
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGI 98
F EI+ L + FKK+ + + G ++ EEF ++L + +++ RV D+FDT NG
Sbjct: 14 FDADEIKRLGKRFKKLD--LDNSGSLSVEEF-MSLPEL--QQNPLVQRVIDIFDTDGNGE 68
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F+EF +S F + K+ F+F++YD+ + G +I E+ Q++ + G NL
Sbjct: 69 VDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDG-YISNGELFQVLKMMV---GNNLK 124
Query: 159 DDVIETIIDKVLPN 172
D ++ I+DK + N
Sbjct: 125 DTQLQQIVDKTIIN 138
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGI 98
F EI+ L + FKK+ + + G ++ EEF ++L + +++ RV D+FDT NG
Sbjct: 15 FDADEIKRLGKRFKKLD--LDNSGSLSVEEF-MSLPEL--QQNPLVQRVIDIFDTDGNGE 69
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F+EF +S F + K+ F+F++YD+ + G +I E+ Q++ + G NL
Sbjct: 70 VDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDG-YISNGELFQVLKMMV---GNNLK 125
Query: 159 DDVIETIIDKVLPN 172
D ++ I+DK + N
Sbjct: 126 DTQLQQIVDKTIIN 139
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 28 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFAD 85
E E L +T F+ E++ LY FK + G++N++ F+ A F + S +A
Sbjct: 1 EGLEQLEAQTNFTKRELQVLYRGFKNECPS----GVVNEDTFKQIYAQFFPHGDASTYAH 56
Query: 86 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQM 145
+F+ FDT G + FE+F ALS+ + +K+ ++F LYD+ + G +I ++E+ +
Sbjct: 57 YLFNAFDTTQTGSVKFEDFVTALSIL-LRGTVHEKLRWTFNLYDINKDG-YINKEEMMDI 114
Query: 146 VVA 148
V A
Sbjct: 115 VKA 117
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 8/120 (6%)
Query: 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVF 88
E L +T F+ E++ LY FK + G++N++ F+ A F + S +A +F
Sbjct: 4 EQLEAQTNFTKRELQVLYRGFKNECPS----GVVNEDTFKQIYAQFFPHGDASTYAHYLF 59
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148
+ FDT G + FE+F ALS+ + +K+ ++F LYD+ + G +I ++E+ +V A
Sbjct: 60 NAFDTTQTGSVKFEDFVTALSIL-LRGTVHEKLRWTFNLYDINKDG-YINKEEMMDIVKA 117
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 74/130 (56%), Gaps = 9/130 (6%)
Query: 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFE 102
EI+ L + FKK+ + + G ++ EEF ++L + +++ RV D+FDT NG + F+
Sbjct: 4 EIKRLGKRFKKLD--LDNSGSLSVEEF-MSLPEL--QQNPLVQRVIDIFDTDGNGEVDFK 58
Query: 103 EFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVI 162
EF +S F + K+ F+F++YD+ + G +I E+ Q++ + G NL D +
Sbjct: 59 EFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDG-YISNGELFQVLKMMV---GNNLKDTQL 114
Query: 163 ETIIDKVLPN 172
+ I+DK + N
Sbjct: 115 QQIVDKTIIN 124
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 74/130 (56%), Gaps = 9/130 (6%)
Query: 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFE 102
EI+ L + FKK+ + + G ++ EEF ++L + +++ RV D+FDT NG + F+
Sbjct: 5 EIKRLGKRFKKLD--LDNSGSLSVEEF-MSLPEL--QQNPLVQRVIDIFDTDGNGEVDFK 59
Query: 103 EFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVI 162
EF +S F + K+ F+F++YD+ + G +I E+ Q++ + G NL D +
Sbjct: 60 EFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDG-YISNGELFQVLKMMV---GNNLKDTQL 115
Query: 163 ETIIDKVLPN 172
+ I+DK + N
Sbjct: 116 QQIVDKTIIN 125
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 30 PEI---LARETVFSVSEIEALYELF-KKISSAVIDDGLINKEEFQLALFKTNKKESLFAD 85
PE+ L R+T F+ E++ Y+ F K S +D K Q F K FA
Sbjct: 10 PEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTK---FAT 66
Query: 86 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQM 145
VF++FD +G + F EF +ALSV +D+K+ ++F+LYDL G +I R E+ +
Sbjct: 67 FVFNVFDENKDGRIEFSEFIQALSV-TSRGTLDEKLRWAFKLYDLDNDG-YITRNEMLDI 124
Query: 146 VVA 148
V A
Sbjct: 125 VDA 127
>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
Length = 208
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 32/162 (19%)
Query: 28 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ----LALFKTNKKESLF 83
E+ E + +ET FS S+I LY F + ++G +++E+FQ LA+ +
Sbjct: 12 EELEEIKKETGFSHSQITRLYSRFTSLDKG--ENGTLSREDFQRIPELAI-------NPL 62
Query: 84 ADRVFDLFDTKHNGILGFEEFARALSVFHP----------NAP-----IDDKIEFSFQLY 128
DR+ + F ++ + F F R L+ F P N P +K+ F+F+LY
Sbjct: 63 GDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLY 122
Query: 129 DLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVL 170
DL + I R E+ Q++ + G+N+SD+ + +I D+ +
Sbjct: 123 DLDKDD-KISRDELLQVLRMMV---GVNISDEQLGSIADRTI 160
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 33 LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQL--ALFKTNKKESLFADRVFDL 90
L +T F+ E+++LY FK GL++++ F+L + F + +A +F+
Sbjct: 82 LQAQTKFTKKELQSLYRGFKNECPT----GLVDEDTFKLIYSQFFPQGDATTYAHFLFNA 137
Query: 91 FDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQG 134
FD NG + FE+F LS+ + +K++++F LYD+ + G
Sbjct: 138 FDADGNGAIHFEDFVVGLSILL-RGTVHEKLKWAFNLYDINKDG 180
>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+
Exchanger 1 Complexed With Essential Cofactor
Calcineurin B Homologous Protein 1
Length = 195
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 32/162 (19%)
Query: 28 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ----LALFKTNKKESLF 83
E+ E + +ET FS S+I LY F + ++G +++E+FQ LA+ +
Sbjct: 12 EELEEIKKETGFSHSQITRLYSRFTSLDKG--ENGTLSREDFQRIPELAI-------NPL 62
Query: 84 ADRVFDLFDTKHNGILGFEEFARALSVFHP----------NAP-----IDDKIEFSFQLY 128
DR+ + F + + F F R L+ F P N P +K+ F+F+LY
Sbjct: 63 GDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLY 122
Query: 129 DLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVL 170
DL + I R E+ Q++ + G+N+SD+ + +I D+ +
Sbjct: 123 DLDKDE-KISRDELLQVLRMMV---GVNISDEQLGSIADRTI 160
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 30 PEI---LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFA 84
PE+ L T F+ EI+ Y+ F + + G ++ EEF+ F S FA
Sbjct: 10 PEVMQDLLESTDFTEHEIQEWYKGFLRDCPS----GHLSMEEFKKIYGNFFPYGDASKFA 65
Query: 85 DRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQ 144
+ VF FD +G + F EF ALSV ++ K++++F +YDL G +I + E+ +
Sbjct: 66 EHVFRTFDANGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNG-YISKAEMLE 123
Query: 145 MVVA--TLAESGMNLSDD 160
+V A + S M + +D
Sbjct: 124 IVQAIYKMVSSVMKMPED 141
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVF 88
E L T F+ E+ + Y+ F K + G I ++EFQ + F +A VF
Sbjct: 14 EELQLNTKFTEEELSSWYQSFLKECPS----GRITRQEFQTIYSKFFPEADPKAYAQHVF 69
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148
FD +G L F+E+ AL + + K+E++F LYD+ G I + EV ++V A
Sbjct: 70 RSFDANSDGTLDFKEYVIALHMTSA-GKTNQKLEWAFSLYDVDGNG-TISKNEVLEIVTA 127
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVF 88
E L T F+ E+ + Y+ F K + G I ++EFQ + F +A VF
Sbjct: 15 EELQLNTKFTEEELSSWYQSFLKECPS----GRITRQEFQTIYSKFFPEADPKAYAQHVF 70
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148
FD +G L F+E+ AL + + K+E++F LYD+ G I + EV ++V A
Sbjct: 71 RSFDANSDGTLDFKEYVIALHMTSA-GKTNQKLEWAFSLYDVDGNG-TISKNEVLEIVTA 128
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVF 88
E L T F+ E+ + Y+ F K + G I ++EFQ + F +A VF
Sbjct: 14 EELQLNTKFTEEELSSWYQSFLKECPS----GRITRQEFQTIYSKFFPEADPKAYAQHVF 69
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148
FD +G L F+E+ AL + + K+E++F LYD+ G I + EV ++V A
Sbjct: 70 RSFDANSDGTLDFKEYVIALHMTSA-GKTNQKLEWAFSLYDVDGNG-TISKNEVLEIVTA 127
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVF 88
E L T F+ E+ + Y+ F K + G I ++EFQ + F +A VF
Sbjct: 14 EELQLNTKFTEEELSSWYQSFLKECPS----GRITRQEFQTIYSKFFPEADPKAYAQHVF 69
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148
FD +G L F+E+ AL + + K+E++F LYD+ G I + EV ++V A
Sbjct: 70 RSFDANSDGTLDFKEYVIALHMTSA-GKTNQKLEWAFSLYDVDGNG-TISKNEVLEIVTA 127
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 28 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEF---QLALFKTNKKESLFA 84
+D L + T F EI+ ++ F + + G + +E+F F E FA
Sbjct: 11 DDLTCLKQSTYFDRREIQQWHKGFLRDCPS----GQLAREDFVKIYKQFFPFGSPED-FA 65
Query: 85 DRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGF 135
+ +F +FD +NG + FEEF LS +++K+ ++F+LYDL G+
Sbjct: 66 NHLFTVFDKDNNGFIHFEEFITVLST-TSRGTLEEKLSWAFELYDLNHDGY 115
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVF 88
E L T F+ E+ + Y+ F K + G I ++EFQ + F +A VF
Sbjct: 14 EELQLNTKFTEEELSSWYQSFLKECPS----GRITRQEFQTIYSKFFPEADPKAYAQHVF 69
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148
FD +G L F+++ AL + + K+E++F LYD+ G I + EV ++V A
Sbjct: 70 RSFDANSDGTLDFKQYVIALHMTSA-GKTNQKLEWAFSLYDVDGNG-TISKNEVLEIVTA 127
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVF 88
E L T F+ E+ + Y+ F K + G I ++EFQ + F +A VF
Sbjct: 14 EELQLNTKFTEEELSSWYQSFLKECPS----GRITRQEFQTIYSKFFPEADPKAYAQHVF 69
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148
FD +G L F+++ AL + + K+E++F LYD+ G I + EV ++V A
Sbjct: 70 RSFDANSDGTLDFKQYVIALHMTSA-GKTNQKLEWAFSLYDVDGNG-TISKNEVLEIVTA 127
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVF 88
E L T FS E+ + Y+ F K G I +++FQ A F + +A VF
Sbjct: 22 EELQLNTKFSEEELCSWYQSFLKDCPT----GRITQQQFQSIYAKFFPDTDPKAYAQHVF 77
Query: 89 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148
FD+ +G L F+E+ AL + K+E++F LYD+ G I + EV ++V A
Sbjct: 78 RSFDSNLDGTLDFKEYVIALHX-TTAGKTNQKLEWAFSLYDVDGNG-TISKNEVLEIVXA 135
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 62 GLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDD 119
GL EF+ L L N+K + D+V++ FDT +G + F EF A+++ ++
Sbjct: 35 GLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIM-QEKMEQ 93
Query: 120 KIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESG 154
K+++ F+LYD G I++ E+ M +A A +G
Sbjct: 94 KLKWYFKLYDADGNG-SIDKNELLDMFMAVQALNG 127
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEV 142
+ +++F+ FD +G + F E+ ALS+ +D K+ + F+LYD+ G I+R E+
Sbjct: 53 YVEQMFETFDFNKDGYIDFMEYVAALSLV-LKGKVDQKLRWYFKLYDVDGNG-CIDRGEL 110
Query: 143 KQMVVATLA 151
++ A A
Sbjct: 111 LNIIKAIRA 119
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 27/161 (16%)
Query: 27 LEDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ-LALFKTNKKESLFAD 85
+ D + + RET FS + + L+ F+ + G +++ + Q + N D
Sbjct: 11 IPDGDSIRRETGFSQASLLRLHHRFRALDRN--KKGYLSRMDLQQIGALAVNP----LGD 64
Query: 86 RVFDLFDTKHNGILGFEEFARALSVFHP-------------NAPID---DKIEFSFQLYD 129
R+ + F + + F F R L+ F P P++ +K+ ++FQLYD
Sbjct: 65 RIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYD 124
Query: 130 LKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVL 170
L + G I R E+ Q++ + G+ ++++ +E I D+ +
Sbjct: 125 LDRDG-KISRHEMLQVLRLMV---GVQVTEEQLENIADRTV 161
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 79 KESLFADRVFDLFDTK-HNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFI 137
K + F +R+ +F T L FE+F LSVF A D K ++F+++D G +
Sbjct: 57 KANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDG-TL 115
Query: 138 ERQEVKQMVVATLAES-GMNLSDDVIETIIDKVL 170
R+++ ++V E LS ++ +ID +L
Sbjct: 116 NREDLSRLVNCLTGEGEDTRLSASEMKQLIDNIL 149
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 79 KESLFADRVFDLFDTK-HNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFI 137
K + F +R+ +F T L FE+F LSVF A D K ++F+++D G +
Sbjct: 88 KANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDG-TL 146
Query: 138 ERQEVKQMVVATLAES-GMNLSDDVIETIIDKVL 170
R+++ ++V E LS ++ +ID +L
Sbjct: 147 NREDLSRLVNCLTGEGEDTRLSASEMKQLIDNIL 180
>pdb|1QLS|A Chain A, S100c (S100a11),Or Calgizzarin, In Complex With Annexin I
N-Terminus
Length = 99
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 44 IEALYELFKKISSAVIDDGLINKEEF------QLALFKTNKKESLFADRVFDLFDTKHNG 97
IE+L +F+K + ++ I+K EF +LA F N+K+ DR+ D +G
Sbjct: 12 IESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDG 71
Query: 98 ILGFEEF 104
L F+EF
Sbjct: 72 QLDFQEF 78
>pdb|1NSH|A Chain A, Solution Structure Of Rabbit Apo-S100a11 (19 Models)
pdb|1NSH|B Chain B, Solution Structure Of Rabbit Apo-S100a11 (19 Models)
Length = 101
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 44 IEALYELFKKISSAVIDDGLINKEEF------QLALFKTNKKESLFADRVFDLFDTKHNG 97
IE+L +F+K + ++K EF +LA F N+K+ DR+ D +G
Sbjct: 10 IESLIAVFQKYAGKDGHSVTLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMKKLDLNSDG 69
Query: 98 ILGFEEF 104
L F+EF
Sbjct: 70 QLDFQEF 76
>pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Obelia Geniculata At
1.82 A Resolution
Length = 195
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 61 DGLINKEEFQLALFKTNKKESL--FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPID 118
+G N LA + N+ + + D VFD+FD +G + +E+ +A +P +
Sbjct: 90 EGWKNLANADLAKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEW-KAYGRISGISPSE 148
Query: 119 DKIEFSFQLYDLKQQG 134
+ E +FQ DL G
Sbjct: 149 EDCEKTFQHCDLDNSG 164
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 41 VSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGI 98
+SE + + LF K DG I +E + N E+ D + ++ D NG
Sbjct: 10 ISEFKEAFSLFDKDG-----DGCITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGT 63
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F EF ++ + +++++ +F+++D Q G FI E++ V+ L E L+
Sbjct: 64 IDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNG-FISAAELRH-VMTNLGEK---LT 118
Query: 159 DDVIETII 166
D+ ++ +I
Sbjct: 119 DEEVDEMI 126
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 41 VSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGI 98
+SE + + LF K DG I +E + N E+ D + ++ D NG
Sbjct: 10 ISEFKEAFSLFDKDG-----DGCITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGT 63
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F EF ++ + +++++ +F+++D Q G FI E++ V+ L E L+
Sbjct: 64 IDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNG-FISAAELRH-VMTNLGEK---LT 118
Query: 159 DDVIETII 166
D+ ++ +I
Sbjct: 119 DEEVDEMI 126
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 61 DGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPID 118
DG I EE + N E D + ++ D NG + F+EF ++ + +
Sbjct: 24 DGCITVEELATVIRSLDQNPTEEELQDMISEV-DADGNGTIEFDEFLSLMAKKVKDTDAE 82
Query: 119 DKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETII 166
++++ +F+++D Q G +I E++ +++ G L+D+ +E +I
Sbjct: 83 EELKEAFKVFDKDQNG-YISASELRHVMINL----GEKLTDEEVEQMI 125
>pdb|3KPX|A Chain A, Crystal Structure Analysis Of Photoprotein Clytin
Length = 198
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 71 LALFKTNKKESL--FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLY 128
L L+ NKK + + + VFD+FD +G + +E+ + P D+ E +F+
Sbjct: 103 LKLWSQNKKSLIRNWGEAVFDIFDKDGSGSISLDEW-KTYGGISGICPSDEDAEKTFKHC 161
Query: 129 DLKQQG 134
DL G
Sbjct: 162 DLDNSG 167
>pdb|1IYJ|B Chain B, Structure Of A Brca2-Dss1 Complex
pdb|1IYJ|D Chain D, Structure Of A Brca2-Dss1 Complex
Length = 817
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 54 ISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFD-----TKHNGILGFEEFARAL 108
+S A I N E FQ A+ KE+L A + F L D +G G EEF RAL
Sbjct: 141 VSKACISVNSKNAEYFQFAIEDHFGKEALCAGKGFRLADGGWLIPSDDGKAGKEEFYRAL 200
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQG 134
+ D VFD+FD +G + +E+ +A +P + E +F+ DL G
Sbjct: 114 WGDAVFDIFDKDGSGTITLDEW-KAYGKISGISPSQEDCEATFRHCDLDNSG 164
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQG 134
+ D VFD+FD +G + +E+ +A +P + E +F+ DL G
Sbjct: 114 WGDAVFDIFDKDGSGTITLDEW-KAYGKISGISPSQEDCEATFRHCDLDNSG 164
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQG 134
+ D VFD+FD +G + +E+ +A +P + E +F+ DL G
Sbjct: 114 WGDAVFDIFDKDGSGTITLDEW-KAYGKISGISPSQEDCEATFRHCDLDNSG 164
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQG 134
+ D VFD+FD +G + +E+ +A +P + E +F+ DL G
Sbjct: 114 WGDAVFDIFDKDGSGTITLDEW-KAYGKISGISPSQEDCEATFRHCDLDDSG 164
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQG 134
+ D VFD+FD +G + +E+ +A +P + E +F+ DL G
Sbjct: 114 WGDAVFDIFDKDGSGTITLDEW-KAYGKISGISPSQEDCEATFRHCDLDNAG 164
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 28.1 bits (61), Expect = 2.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 127 LYDLKQQGFFIERQEVKQMVVATLA-ESGMNLSDDVIETIIDKVLPNLL 174
+YD + +GF IE V QM A ++ + G+ L D+ +TI P +L
Sbjct: 319 IYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVL 367
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQG 134
A RVF+ FD +G L +EF F P +D ++F F+ D+ G
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKF-FEEIDVDGNG 52
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 41 VSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGI 98
++E + + LF K DG I +E + N E+ D + ++ D NG
Sbjct: 9 IAEFKEAFSLFDKDG-----DGTITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGT 62
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F EF ++ + ++K++ +F+++D G FI E++ V+ L E L+
Sbjct: 63 IDFPEFLNLMARKMKDTDSEEKLKEAFRVFDKDGNG-FISAAELRH-VMTNLGEK---LT 117
Query: 159 DDVIETII 166
D+ ++ +I
Sbjct: 118 DEEVDEMI 125
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 41 VSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGI 98
++E + + LF K DG I +E + N E+ D + ++ D NG
Sbjct: 10 IAEFKEAFSLFDKDG-----DGTITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGT 63
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F EF ++ + +++I +F+++D G FI E++ V+ L E L+
Sbjct: 64 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG-FISAAELRH-VMTNLGEK---LT 118
Query: 159 DDVIETII 166
D+ ++ +I
Sbjct: 119 DEEVDEMI 126
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 41 VSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGI 98
++E + + LF K DG I +E + N E+ D + ++ D NG
Sbjct: 10 IAEFKEAFSLFDKDG-----DGTITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGT 63
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F EF ++ + +++I +F+++D G FI E++ V+ L E L+
Sbjct: 64 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG-FISAAELRH-VMTNLGEK---LT 118
Query: 159 DDVIETII 166
D+ ++ +I
Sbjct: 119 DEEVDEMI 126
>pdb|1B7B|A Chain A, Carbamate Kinase From Enterococcus Faecalis
pdb|1B7B|B Chain B, Carbamate Kinase From Enterococcus Faecalis
pdb|1B7B|C Chain C, Carbamate Kinase From Enterococcus Faecalis
pdb|1B7B|D Chain D, Carbamate Kinase From Enterococcus Faecalis
pdb|2WE4|A Chain A, Carbamate Kinase From Enterococcus Faecalis Bound To A
Sulfate Ion And Two Water Molecules, Which Mimic The
Substrate Carbamyl Phosphate
pdb|2WE4|B Chain B, Carbamate Kinase From Enterococcus Faecalis Bound To A
Sulfate Ion And Two Water Molecules, Which Mimic The
Substrate Carbamyl Phosphate
pdb|2WE4|C Chain C, Carbamate Kinase From Enterococcus Faecalis Bound To A
Sulfate Ion And Two Water Molecules, Which Mimic The
Substrate Carbamyl Phosphate
pdb|2WE4|D Chain D, Carbamate Kinase From Enterococcus Faecalis Bound To A
Sulfate Ion And Two Water Molecules, Which Mimic The
Substrate Carbamyl Phosphate
pdb|2WE5|A Chain A, Carbamate Kinase From Enterococcus Faecalis Bound To Mgadp
pdb|2WE5|B Chain B, Carbamate Kinase From Enterococcus Faecalis Bound To Mgadp
pdb|2WE5|C Chain C, Carbamate Kinase From Enterococcus Faecalis Bound To Mgadp
Length = 310
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 101 FEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDD 160
EE+ +A F P + + KIE + Q F+E Q KQ ++ +L G D+
Sbjct: 254 LEEYKQA-GHFAPGSMLP-KIEAAIQ---------FVESQPNKQAIITSLENLGSMSGDE 302
Query: 161 VIETIIDK 168
++ T++ K
Sbjct: 303 IVGTVVTK 310
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 41 VSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGI 98
++E + + LF K DG I +E + N E+ D + ++ D NG
Sbjct: 9 IAEFKEAFSLFDKDG-----DGTITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGT 62
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F EF ++ + +++I +F+++D G FI E++ V+ L E L+
Sbjct: 63 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG-FISAAELRH-VMTNLGEK---LT 117
Query: 159 DDVIETII 166
D+ ++ +I
Sbjct: 118 DEEVDEMI 125
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 41 VSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGI 98
++E + + LF K DG I +E + N E+ D + ++ D NG
Sbjct: 10 IAEFKEAFSLFDKDG-----DGTITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGT 63
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F EF ++ + +++I +F+++D G FI E++ V+ L E L+
Sbjct: 64 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG-FISAAELRH-VMTNLGEK---LT 118
Query: 159 DDVIETII 166
D+ ++ +I
Sbjct: 119 DEEVDEMI 126
>pdb|1NYA|A Chain A, Nmr Solution Structure Of Calerythrin, An Ef-hand Calcium-
Binding Protein
Length = 176
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 61 DGLINKEEF--QLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112
DG IN +EF L +K E A F+ DT NG L +E A+ FH
Sbjct: 116 DGQINADEFAAWLTALGMSKAE---AAEAFNQVDTNGNGELSLDELLTAVRDFH 166
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 41 VSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGI 98
++E + + LF K DG I +E + N E+ D + ++ D NG
Sbjct: 9 IAEFKEAFSLFDKDG-----DGTITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGT 62
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F EF ++ + +++I +F+++D G FI E++ V+ L E L+
Sbjct: 63 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG-FISAAELRH-VMTNLGEK---LT 117
Query: 159 DDVIETII 166
D+ ++ +I
Sbjct: 118 DEEVDEMI 125
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 21/133 (15%)
Query: 43 EIEALYELFKKISSAVIDDGLINKEEFQLAL----FKTNKKE--SLFADRVFDLFDTKHN 96
EI ++LF S G I+ +E ++A+ F+ K+E + AD D +
Sbjct: 9 EIREAFDLFDTDGS-----GTIDAKELKVAMRALGFEPKKEEIKKMIAD-----IDKDGS 58
Query: 97 GILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMN 156
G + FEEF + ++ ++I +F+L+D + G I + +K++ E G N
Sbjct: 59 GTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETG-KISFKNLKRVA----KELGEN 113
Query: 157 LSDDVIETIIDKV 169
++D+ ++ +ID+
Sbjct: 114 MTDEELQEMIDEA 126
>pdb|2BE4|A Chain A, X-ray Structure An Ef-hand Protein From Danio Rerio
Dr.36843
pdb|2Q4U|A Chain A, Ensemble Refinement Of The Crystal Structure Of An Ef-Hand
Protein From Danio Rerio Dr.36843
Length = 272
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 60 DDGLINKEE----FQLALFKTNKKESLFADRVFDL-------FDTKHNGILGFEEFARA- 107
D+G I +E F+ L K K+ + +RV + +D +G L EE A
Sbjct: 24 DNGYIEGKELDDFFRHXLKKLQPKDKITDERVQQIKKSFXSAYDATFDGRLQIEELANXI 83
Query: 108 -------LSVFHPNAPIDDKIEFS--FQLYDLKQQGF 135
L +F AP+D+ +EF ++ YD G+
Sbjct: 84 LPQEENFLLIFRREAPLDNSVEFXKIWRKYDADSSGY 120
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 41 VSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGI 98
V+E + + LF K DG I E + N E+ D + ++ D NG
Sbjct: 9 VTEFKEAFSLFDKDG-----DGCITTRELGTVMRSLGQNPTEAELRDMMSEI-DRDGNGT 62
Query: 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158
+ F EF ++ + +++I +F+++D G F+ E++ V+ L E LS
Sbjct: 63 VDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNG-FVSAAELRH-VMTRLGEK---LS 117
Query: 159 DDVIETII 166
D+ ++ +I
Sbjct: 118 DEEVDEMI 125
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 62 GLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARA 107
G + +EEF+ AL + A+ VF D +G + F+EFAR
Sbjct: 42 GRLEREEFR-ALCTELRVRPADAEAVFQRLDADRDGAITFQEFARG 86
>pdb|2SCP|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|2SCP|B Chain B, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|1Q80|A Chain A, Solution Structure And Dynamics Of Nereis Sarcoplasmic
Calcium Binding Protein
Length = 174
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 60 DDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPN 114
+D I+++E+ + F + A FD DT ++G+L EEF A S F N
Sbjct: 107 EDNNISRDEYGI-FFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFMN 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,762,433
Number of Sequences: 62578
Number of extensions: 177381
Number of successful extensions: 627
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 106
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)