Query 030614
Match_columns 174
No_of_seqs 127 out of 1427
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 16:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 2.9E-22 6.4E-27 140.7 15.3 130 33-170 8-138 (160)
2 KOG0044 Ca2+ sensor (EF-Hand s 99.9 6E-22 1.3E-26 143.6 14.0 142 26-173 10-156 (193)
3 KOG0034 Ca2+/calmodulin-depend 99.9 4.1E-21 8.8E-26 139.1 15.4 149 16-173 1-156 (187)
4 KOG0038 Ca2+-binding kinase in 99.8 1.3E-18 2.9E-23 118.6 10.0 149 16-173 1-158 (189)
5 KOG0027 Calmodulin and related 99.8 9.8E-18 2.1E-22 118.7 14.4 124 39-169 2-130 (151)
6 KOG0028 Ca2+-binding protein ( 99.7 1.6E-16 3.5E-21 109.9 13.2 126 36-168 24-150 (172)
7 PTZ00183 centrin; Provisional 99.7 5.7E-16 1.2E-20 109.8 15.6 126 37-169 9-135 (158)
8 PTZ00184 calmodulin; Provision 99.7 1.2E-15 2.6E-20 106.9 15.2 125 38-169 4-129 (149)
9 KOG0031 Myosin regulatory ligh 99.7 8.1E-16 1.8E-20 105.8 13.6 122 37-169 24-146 (171)
10 KOG0027 Calmodulin and related 99.5 3E-13 6.4E-18 95.7 12.4 137 5-148 7-149 (151)
11 COG5126 FRQ1 Ca2+-binding prot 99.5 7.1E-13 1.5E-17 93.4 13.1 134 5-148 19-156 (160)
12 KOG0037 Ca2+-binding protein, 99.5 6.2E-13 1.3E-17 96.8 12.3 112 44-169 56-169 (221)
13 PLN02964 phosphatidylserine de 99.5 4.8E-13 1.1E-17 112.7 13.5 115 26-148 122-243 (644)
14 KOG0030 Myosin essential light 99.5 4.5E-13 9.8E-18 90.9 10.5 124 38-168 4-132 (152)
15 PTZ00183 centrin; Provisional 99.4 4.4E-12 9.6E-17 89.8 13.4 135 5-148 16-154 (158)
16 PTZ00184 calmodulin; Provision 99.4 3.3E-11 7.2E-16 84.2 13.0 133 6-147 11-147 (149)
17 KOG0044 Ca2+ sensor (EF-Hand s 99.4 8.5E-12 1.8E-16 90.8 10.0 136 8-148 28-175 (193)
18 KOG0036 Predicted mitochondria 99.3 3E-11 6.6E-16 95.3 12.9 121 39-172 8-130 (463)
19 KOG0028 Ca2+-binding protein ( 99.2 1.1E-09 2.5E-14 76.2 11.5 132 8-148 35-170 (172)
20 KOG0034 Ca2+/calmodulin-depend 99.1 1.9E-09 4.2E-14 78.4 12.7 96 50-148 71-175 (187)
21 PF13499 EF-hand_7: EF-hand do 99.1 3E-10 6.6E-15 68.9 5.8 61 84-145 2-65 (66)
22 KOG0037 Ca2+-binding protein, 99.0 1.4E-08 3.1E-13 74.2 11.5 126 10-149 61-189 (221)
23 PF13499 EF-hand_7: EF-hand do 98.9 6.2E-09 1.3E-13 63.1 7.0 61 46-108 1-66 (66)
24 smart00027 EH Eps15 homology d 98.9 1.7E-08 3.7E-13 65.9 8.9 70 39-111 4-73 (96)
25 KOG4223 Reticulocalbin, calume 98.9 1.3E-08 2.9E-13 78.4 9.2 118 42-166 160-283 (325)
26 cd05022 S-100A13 S-100A13: S-1 98.9 2.3E-08 4.9E-13 64.3 8.1 65 44-110 7-75 (89)
27 cd05022 S-100A13 S-100A13: S-1 98.8 3.8E-08 8.2E-13 63.3 7.4 66 84-151 10-78 (89)
28 cd05027 S-100B S-100B: S-100B 98.8 8.3E-08 1.8E-12 61.7 8.3 65 44-110 7-79 (88)
29 cd05026 S-100Z S-100Z: S-100Z 98.7 1E-07 2.3E-12 61.9 8.7 66 44-111 9-82 (93)
30 smart00027 EH Eps15 homology d 98.7 9.4E-08 2E-12 62.4 8.5 73 83-159 11-84 (96)
31 KOG0036 Predicted mitochondria 98.7 2.2E-07 4.7E-12 73.9 12.0 138 8-166 16-156 (463)
32 cd00051 EFh EF-hand, calcium b 98.7 1E-07 2.3E-12 55.9 7.5 61 84-146 2-62 (63)
33 cd00213 S-100 S-100: S-100 dom 98.7 1.5E-07 3.2E-12 60.4 8.0 67 42-110 5-79 (88)
34 cd05027 S-100B S-100B: S-100B 98.7 2.2E-07 4.7E-12 59.7 8.4 66 83-150 9-81 (88)
35 cd00052 EH Eps15 homology doma 98.7 1.7E-07 3.6E-12 56.7 7.4 59 86-148 3-61 (67)
36 cd00052 EH Eps15 homology doma 98.7 2.3E-07 5E-12 56.0 8.0 60 49-111 3-62 (67)
37 PF13833 EF-hand_8: EF-hand do 98.7 1E-07 2.3E-12 55.3 6.1 51 96-148 2-53 (54)
38 KOG0377 Protein serine/threoni 98.6 4.8E-07 1E-11 72.6 11.0 122 45-169 464-596 (631)
39 KOG0040 Ca2+-binding actin-bun 98.6 8.9E-07 1.9E-11 79.6 13.4 106 36-145 2244-2358(2399)
40 cd05026 S-100Z S-100Z: S-100Z 98.6 3.2E-07 6.9E-12 59.6 8.2 66 84-150 12-83 (93)
41 cd05025 S-100A1 S-100A1: S-100 98.6 4E-07 8.7E-12 58.9 8.6 65 84-149 11-81 (92)
42 cd05029 S-100A6 S-100A6: S-100 98.6 5.8E-07 1.3E-11 57.7 8.7 69 43-111 8-80 (88)
43 cd05031 S-100A10_like S-100A10 98.6 3.9E-07 8.4E-12 59.2 7.9 64 84-148 10-79 (94)
44 PF00036 EF-hand_1: EF hand; 98.6 8.4E-08 1.8E-12 48.5 3.3 27 121-148 2-28 (29)
45 cd05025 S-100A1 S-100A1: S-100 98.6 4.5E-07 9.8E-12 58.7 7.5 66 44-111 8-81 (92)
46 PF13833 EF-hand_8: EF-hand do 98.6 2.9E-07 6.2E-12 53.5 5.9 50 60-109 1-52 (54)
47 cd00213 S-100 S-100: S-100 dom 98.5 4.8E-07 1E-11 58.0 7.4 65 84-149 10-80 (88)
48 cd05031 S-100A10_like S-100A10 98.5 8E-07 1.7E-11 57.8 8.4 66 44-111 7-80 (94)
49 cd05023 S-100A11 S-100A11: S-1 98.5 9.2E-07 2E-11 56.9 8.3 68 42-111 6-81 (89)
50 KOG2562 Protein phosphatase 2 98.5 1.4E-06 3E-11 70.2 10.7 108 38-151 271-382 (493)
51 cd00252 SPARC_EC SPARC_EC; ext 98.5 1E-06 2.2E-11 59.4 8.1 57 84-146 50-106 (116)
52 cd05029 S-100A6 S-100A6: S-100 98.5 1.1E-06 2.3E-11 56.5 7.8 66 84-150 12-81 (88)
53 cd00252 SPARC_EC SPARC_EC; ext 98.4 1.3E-06 2.7E-11 59.0 7.4 64 40-108 43-106 (116)
54 cd05030 calgranulins Calgranul 98.4 2.7E-06 5.9E-11 54.6 7.8 68 43-110 6-79 (88)
55 cd00051 EFh EF-hand, calcium b 98.4 1.9E-06 4.2E-11 50.3 6.6 60 47-108 2-62 (63)
56 KOG0041 Predicted Ca2+-binding 98.4 1.7E-06 3.7E-11 62.7 7.3 112 30-144 84-199 (244)
57 cd05023 S-100A11 S-100A11: S-1 98.4 3.3E-06 7.2E-11 54.3 7.9 66 84-150 11-82 (89)
58 KOG0031 Myosin regulatory ligh 98.3 3.7E-05 8E-10 53.6 12.5 131 5-148 31-165 (171)
59 PF00036 EF-hand_1: EF hand; 98.3 1.2E-06 2.7E-11 44.2 3.7 27 84-110 2-28 (29)
60 KOG4223 Reticulocalbin, calume 98.3 4.1E-06 8.8E-11 64.9 8.1 100 44-146 76-189 (325)
61 cd05024 S-100A10 S-100A10: A s 98.2 2E-05 4.2E-10 50.6 8.7 67 42-111 5-77 (91)
62 KOG0751 Mitochondrial aspartat 98.2 1.7E-05 3.7E-10 64.7 10.4 106 38-149 29-137 (694)
63 PF14658 EF-hand_9: EF-hand do 98.2 8.4E-06 1.8E-10 49.0 6.5 60 87-147 3-63 (66)
64 KOG0751 Mitochondrial aspartat 98.2 1.7E-05 3.6E-10 64.8 10.1 106 37-149 69-208 (694)
65 PF12763 EF-hand_4: Cytoskelet 98.2 5.7E-06 1.2E-10 54.7 6.2 70 38-111 3-72 (104)
66 cd05030 calgranulins Calgranul 98.2 1.1E-05 2.5E-10 51.7 7.3 66 84-150 10-81 (88)
67 PF13405 EF-hand_6: EF-hand do 98.2 3.4E-06 7.3E-11 43.2 3.7 27 120-147 1-27 (31)
68 PF13202 EF-hand_5: EF hand; P 98.1 5.1E-06 1.1E-10 40.4 3.1 25 121-146 1-25 (25)
69 KOG0038 Ca2+-binding kinase in 98.1 2.3E-05 5.1E-10 54.1 7.0 88 60-148 84-177 (189)
70 KOG0030 Myosin essential light 98.0 4.6E-05 9.9E-10 52.3 8.2 132 7-146 12-149 (152)
71 PLN02964 phosphatidylserine de 98.0 9.3E-05 2E-09 63.3 11.2 98 6-111 143-244 (644)
72 KOG4666 Predicted phosphate ac 98.0 1.9E-05 4.1E-10 61.3 6.0 118 28-150 209-326 (412)
73 PRK12309 transaldolase/EF-hand 98.0 3E-05 6.6E-10 62.7 7.4 55 81-150 333-387 (391)
74 KOG2643 Ca2+ binding protein, 98.0 1.9E-05 4E-10 63.5 6.0 102 45-150 140-263 (489)
75 PF14658 EF-hand_9: EF-hand do 97.9 5E-05 1.1E-09 45.6 5.8 60 50-111 3-65 (66)
76 KOG0377 Protein serine/threoni 97.8 4.8E-05 1E-09 61.4 6.4 64 84-148 549-615 (631)
77 KOG2643 Ca2+ binding protein, 97.7 0.00012 2.5E-09 59.1 6.7 101 47-151 320-456 (489)
78 PF14788 EF-hand_10: EF hand; 97.7 0.00021 4.5E-09 40.6 5.9 48 99-148 2-49 (51)
79 KOG0041 Predicted Ca2+-binding 97.7 0.00048 1E-08 50.2 8.9 66 83-150 100-165 (244)
80 KOG4347 GTPase-activating prot 97.7 0.00012 2.7E-09 61.5 6.5 112 28-142 487-612 (671)
81 PF13202 EF-hand_5: EF hand; P 97.6 0.00012 2.7E-09 35.4 3.3 23 85-107 2-24 (25)
82 cd05024 S-100A10 S-100A10: A s 97.5 0.00091 2E-08 43.0 7.7 65 84-150 10-78 (91)
83 KOG0046 Ca2+-binding actin-bun 97.4 0.00061 1.3E-08 56.2 7.5 73 37-112 11-87 (627)
84 PF13405 EF-hand_6: EF-hand do 97.4 0.00025 5.5E-09 36.1 3.6 26 84-109 2-27 (31)
85 PF14788 EF-hand_10: EF hand; 97.4 0.00094 2E-08 37.9 5.6 49 63-111 1-50 (51)
86 PRK12309 transaldolase/EF-hand 97.4 0.00062 1.4E-08 55.2 6.6 54 45-112 334-387 (391)
87 PF10591 SPARC_Ca_bdg: Secrete 97.3 0.00015 3.3E-09 48.7 2.6 58 82-143 54-111 (113)
88 PF12763 EF-hand_4: Cytoskelet 97.1 0.0026 5.7E-08 42.0 6.7 63 83-150 11-73 (104)
89 KOG4251 Calcium binding protei 97.1 0.0013 2.8E-08 49.6 5.6 138 5-147 100-308 (362)
90 smart00054 EFh EF-hand, calciu 97.0 0.0013 2.7E-08 31.7 3.1 27 121-148 2-28 (29)
91 KOG0169 Phosphoinositide-speci 96.9 0.017 3.6E-07 50.0 11.1 120 39-169 130-251 (746)
92 PF10591 SPARC_Ca_bdg: Secrete 96.9 0.0043 9.3E-08 41.6 6.2 66 38-106 47-112 (113)
93 KOG0040 Ca2+-binding actin-bun 96.9 0.0051 1.1E-07 56.7 8.1 82 84-168 2255-2342(2399)
94 KOG4251 Calcium binding protei 96.8 0.0042 9.1E-08 46.9 6.2 120 43-165 99-282 (362)
95 KOG2562 Protein phosphatase 2 96.7 0.0065 1.4E-07 49.6 6.5 84 60-144 328-420 (493)
96 KOG4666 Predicted phosphate ac 96.6 0.004 8.8E-08 48.7 4.8 99 45-148 259-359 (412)
97 smart00054 EFh EF-hand, calciu 96.4 0.0062 1.3E-07 29.0 3.4 26 84-109 2-27 (29)
98 KOG4065 Uncharacterized conser 96.1 0.032 6.9E-07 37.3 6.3 32 38-73 62-93 (144)
99 KOG0035 Ca2+-binding actin-bun 96.1 0.042 9.1E-07 48.6 8.9 114 28-145 729-849 (890)
100 PF09279 EF-hand_like: Phospho 96.1 0.019 4.2E-07 36.0 5.2 63 84-148 2-69 (83)
101 KOG1955 Ral-GTPase effector RA 95.6 0.037 8.1E-07 45.8 6.2 72 37-111 223-294 (737)
102 KOG3555 Ca2+-binding proteogly 94.0 0.13 2.8E-06 40.8 5.1 104 37-148 199-310 (434)
103 PLN02952 phosphoinositide phos 93.9 0.52 1.1E-05 40.6 8.9 50 97-148 15-65 (599)
104 KOG4065 Uncharacterized conser 93.4 0.23 4.9E-06 33.3 4.7 59 86-145 71-142 (144)
105 PF05042 Caleosin: Caleosin re 93.3 0.43 9.3E-06 34.3 6.4 95 51-148 13-124 (174)
106 PF09279 EF-hand_like: Phospho 93.3 0.38 8.2E-06 30.0 5.6 45 120-169 1-46 (83)
107 PF05517 p25-alpha: p25-alpha 93.2 0.65 1.4E-05 32.9 7.2 66 45-112 2-71 (154)
108 PF09068 EF-hand_2: EF hand; 93.0 1.4 3.1E-05 30.1 8.4 99 30-148 26-125 (127)
109 KOG0042 Glycerol-3-phosphate d 92.7 0.67 1.5E-05 39.4 7.5 97 8-113 563-660 (680)
110 KOG4286 Dystrophin-like protei 92.6 1 2.2E-05 39.5 8.6 117 31-151 406-536 (966)
111 KOG1029 Endocytic adaptor prot 92.5 0.23 5.1E-06 43.4 4.7 69 39-110 189-257 (1118)
112 KOG0046 Ca2+-binding actin-bun 92.2 0.71 1.5E-05 38.8 7.0 65 84-150 21-87 (627)
113 KOG1029 Endocytic adaptor prot 92.0 0.76 1.6E-05 40.4 7.2 69 38-110 9-77 (1118)
114 PF14513 DAG_kinase_N: Diacylg 91.9 0.54 1.2E-05 32.7 5.2 71 61-132 5-82 (138)
115 KOG1707 Predicted Ras related/ 91.7 2 4.3E-05 36.8 9.2 109 38-149 188-344 (625)
116 PF05042 Caleosin: Caleosin re 91.1 4.3 9.3E-05 29.3 9.2 62 84-147 98-165 (174)
117 KOG4578 Uncharacterized conser 91.1 0.18 3.9E-06 39.8 2.5 64 84-148 335-398 (421)
118 PF08726 EFhand_Ca_insen: Ca2+ 90.9 0.15 3.3E-06 30.9 1.6 29 116-146 3-31 (69)
119 KOG0169 Phosphoinositide-speci 90.7 1.9 4.1E-05 37.8 8.4 67 81-149 135-201 (746)
120 PLN02952 phosphoinositide phos 90.4 3.8 8.2E-05 35.5 9.9 86 60-147 13-109 (599)
121 KOG3555 Ca2+-binding proteogly 89.0 1.2 2.5E-05 35.7 5.3 62 44-110 249-310 (434)
122 KOG0039 Ferric reductase, NADH 88.2 1.3 2.8E-05 38.7 5.7 68 96-172 2-69 (646)
123 KOG4578 Uncharacterized conser 87.8 0.31 6.7E-06 38.5 1.5 67 43-111 331-399 (421)
124 PF09069 EF-hand_3: EF-hand; 85.6 3.1 6.7E-05 26.7 5.0 32 118-151 2-33 (90)
125 PF12174 RST: RCD1-SRO-TAF4 (R 85.2 4.6 0.0001 24.6 5.4 49 96-149 6-54 (70)
126 KOG1707 Predicted Ras related/ 83.7 2 4.3E-05 36.8 4.4 92 36-131 306-398 (625)
127 KOG3866 DNA-binding protein of 83.3 5.2 0.00011 31.7 6.2 90 50-149 249-355 (442)
128 PF05517 p25-alpha: p25-alpha 83.1 14 0.0003 26.1 9.5 83 85-170 2-89 (154)
129 KOG4301 Beta-dystrobrevin [Cyt 80.8 7.7 0.00017 31.1 6.4 120 29-151 40-176 (434)
130 KOG3449 60S acidic ribosomal p 80.3 7.6 0.00016 25.7 5.3 44 121-169 3-46 (112)
131 PF08414 NADPH_Ox: Respiratory 80.3 7.7 0.00017 25.3 5.3 62 43-111 28-93 (100)
132 KOG2243 Ca2+ release channel ( 78.6 4.7 0.0001 38.4 5.2 56 51-108 4063-4118(5019)
133 KOG4347 GTPase-activating prot 76.4 6.6 0.00014 34.0 5.3 51 99-150 535-585 (671)
134 KOG0998 Synaptic vesicle prote 73.9 2.4 5.1E-05 38.3 2.2 72 38-112 276-347 (847)
135 cd07313 terB_like_2 tellurium 73.9 21 0.00045 22.9 6.3 82 60-145 12-97 (104)
136 PF00404 Dockerin_1: Dockerin 73.6 6.4 0.00014 18.0 2.6 18 129-147 1-18 (21)
137 KOG1955 Ral-GTPase effector RA 73.4 6.8 0.00015 33.1 4.5 71 84-158 233-304 (737)
138 PF09682 Holin_LLH: Phage holi 72.4 20 0.00043 23.6 5.9 50 123-173 55-104 (108)
139 PF07879 PHB_acc_N: PHB/PHA ac 72.3 4.1 9E-05 24.2 2.3 22 126-148 10-31 (64)
140 PTZ00373 60S Acidic ribosomal 72.1 18 0.00039 24.2 5.5 44 121-169 5-48 (112)
141 KOG4004 Matricellular protein 71.3 1.7 3.7E-05 32.0 0.6 21 121-142 224-244 (259)
142 KOG2557 Uncharacterized conser 71.3 55 0.0012 26.7 9.7 65 85-151 60-125 (427)
143 PF11829 DUF3349: Protein of u 70.5 25 0.00054 22.8 5.8 66 99-169 20-85 (96)
144 PLN02228 Phosphoinositide phos 69.5 29 0.00063 30.0 7.5 28 83-112 25-52 (567)
145 PF04558 tRNA_synt_1c_R1: Glut 68.1 23 0.0005 25.4 5.8 51 116-172 82-132 (164)
146 cd05833 Ribosomal_P2 Ribosomal 67.1 26 0.00057 23.3 5.5 43 122-169 4-46 (109)
147 PF01023 S_100: S-100/ICaBP ty 66.5 19 0.00042 19.6 4.4 32 43-74 4-35 (44)
148 PF14513 DAG_kinase_N: Diacylg 66.4 8.2 0.00018 26.8 3.1 68 26-95 9-82 (138)
149 KOG2871 Uncharacterized conser 66.0 8.9 0.00019 31.1 3.6 32 117-149 307-338 (449)
150 KOG1265 Phospholipase C [Lipid 64.8 53 0.0012 30.1 8.3 68 78-146 217-297 (1189)
151 KOG0035 Ca2+-binding actin-bun 64.5 35 0.00076 31.1 7.3 64 84-148 749-816 (890)
152 PF11116 DUF2624: Protein of u 64.5 18 0.00039 22.9 4.1 28 137-168 15-42 (85)
153 PF03979 Sigma70_r1_1: Sigma-7 64.3 13 0.00028 23.2 3.5 31 132-169 18-48 (82)
154 PLN02859 glutamine-tRNA ligase 62.5 1.2E+02 0.0026 27.5 10.5 52 115-172 83-134 (788)
155 PF02885 Glycos_trans_3N: Glyc 62.0 19 0.00041 21.3 3.8 26 137-165 15-40 (66)
156 PLN02222 phosphoinositide phos 59.1 50 0.0011 28.7 7.1 65 38-109 21-89 (581)
157 TIGR01848 PHA_reg_PhaR polyhyd 58.4 8.8 0.00019 25.3 2.0 65 90-167 11-76 (107)
158 PF09873 DUF2100: Uncharacteri 57.8 32 0.0007 25.6 5.0 40 130-170 36-83 (215)
159 PLN02230 phosphoinositide phos 57.2 66 0.0014 28.1 7.5 67 80-148 27-102 (598)
160 PLN00138 large subunit ribosom 57.0 50 0.0011 22.1 5.5 42 123-169 5-46 (113)
161 PF11848 DUF3368: Domain of un 55.7 26 0.00057 19.3 3.5 33 132-168 14-46 (48)
162 KOG1785 Tyrosine kinase negati 53.7 1.2E+02 0.0027 25.1 8.1 90 61-154 188-280 (563)
163 PF06648 DUF1160: Protein of u 53.4 69 0.0015 21.8 6.1 76 84-172 39-114 (122)
164 TIGR01673 holin_LLH phage holi 51.7 69 0.0015 21.2 5.9 52 121-173 52-104 (108)
165 PF14069 SpoVIF: Stage VI spor 51.6 58 0.0012 20.3 4.8 33 139-171 30-62 (79)
166 PF05099 TerB: Tellurite resis 48.9 19 0.0004 24.4 2.6 81 60-143 36-119 (140)
167 COG5611 Predicted nucleic-acid 48.6 83 0.0018 21.2 6.1 51 118-171 20-70 (130)
168 cd06404 PB1_aPKC PB1 domain is 48.5 56 0.0012 20.6 4.3 21 117-138 57-77 (83)
169 PF13720 Acetyltransf_11: Udp 47.7 68 0.0015 20.0 5.6 54 35-94 24-77 (83)
170 PRK00819 RNA 2'-phosphotransfe 46.6 42 0.00092 24.4 4.2 33 130-167 28-60 (179)
171 PF11116 DUF2624: Protein of u 46.6 74 0.0016 20.2 7.8 68 98-172 14-81 (85)
172 KOG2243 Ca2+ release channel ( 45.3 3.3E+02 0.0071 27.2 10.1 59 86-147 4061-4119(5019)
173 PF01885 PTS_2-RNA: RNA 2'-pho 45.2 41 0.00089 24.5 4.0 35 129-168 26-60 (186)
174 cd04411 Ribosomal_P1_P2_L12p R 44.9 64 0.0014 21.2 4.5 33 131-168 12-44 (105)
175 PF09068 EF-hand_2: EF hand; 44.8 36 0.00077 23.2 3.4 29 83-111 98-126 (127)
176 PLN02230 phosphoinositide phos 44.2 91 0.002 27.3 6.4 50 116-170 26-77 (598)
177 PLN02228 Phosphoinositide phos 43.9 1.1E+02 0.0024 26.6 6.9 66 38-110 20-92 (567)
178 PF12674 Zn_ribbon_2: Putative 42.1 82 0.0018 19.6 4.5 35 137-172 42-76 (81)
179 PRK12461 UDP-N-acetylglucosami 41.6 1.2E+02 0.0027 23.2 6.3 57 35-97 196-252 (255)
180 KOG3442 Uncharacterized conser 40.6 56 0.0012 22.3 3.7 31 134-170 54-84 (132)
181 KOG0039 Ferric reductase, NADH 40.2 71 0.0015 28.2 5.3 81 61-148 2-89 (646)
182 KOG0042 Glycerol-3-phosphate d 40.2 71 0.0015 27.8 5.0 64 84-149 595-658 (680)
183 PF02761 Cbl_N2: CBL proto-onc 40.0 97 0.0021 19.6 5.7 69 39-113 4-73 (85)
184 PF12486 DUF3702: ImpA domain 39.9 51 0.0011 23.2 3.6 32 42-75 66-97 (148)
185 KOG4403 Cell surface glycoprot 39.6 1.1E+02 0.0024 25.6 5.9 84 60-148 41-129 (575)
186 KOG4004 Matricellular protein 39.1 15 0.00032 27.3 0.8 60 51-112 193-252 (259)
187 PRK06402 rpl12p 50S ribosomal 38.3 1.2E+02 0.0026 20.1 5.6 29 135-168 16-44 (106)
188 KOG4629 Predicted mechanosensi 37.9 72 0.0016 28.5 5.0 59 84-151 406-464 (714)
189 PRK00199 ihfB integration host 37.8 75 0.0016 20.1 4.0 31 138-172 2-32 (94)
190 PRK07539 NADH dehydrogenase su 37.8 44 0.00095 23.5 3.1 36 26-63 39-74 (154)
191 KOG3866 DNA-binding protein of 36.6 67 0.0014 25.7 4.1 29 122-151 247-275 (442)
192 TIGR00988 hip integration host 36.0 84 0.0018 19.8 4.0 31 138-172 2-32 (94)
193 PF05920 Homeobox_KN: Homeobox 35.9 25 0.00055 18.7 1.3 26 23-48 9-34 (40)
194 PF12631 GTPase_Cys_C: Catalyt 35.9 83 0.0018 18.9 3.8 47 120-171 24-70 (73)
195 PLN02223 phosphoinositide phos 34.9 1.7E+02 0.0037 25.3 6.6 53 117-171 14-67 (537)
196 PF08672 APC2: Anaphase promot 34.2 1E+02 0.0022 18.0 4.4 33 116-150 12-46 (60)
197 PF02671 PAH: Paired amphipath 33.8 82 0.0018 17.0 4.4 15 134-149 17-31 (47)
198 cd00086 homeodomain Homeodomai 33.8 82 0.0018 17.4 3.4 22 27-48 27-48 (59)
199 PRK14981 DNA-directed RNA poly 33.4 94 0.002 20.6 4.0 16 37-52 10-25 (112)
200 COG4463 CtsR Transcriptional r 33.2 43 0.00093 23.3 2.3 13 137-149 93-105 (153)
201 PF11363 DUF3164: Protein of u 33.1 2E+02 0.0043 21.2 6.1 43 117-167 117-159 (195)
202 COG5394 Uncharacterized protei 33.1 47 0.001 23.8 2.5 46 91-148 21-66 (193)
203 TIGR00135 gatC glutamyl-tRNA(G 33.0 1.1E+02 0.0023 19.4 4.1 28 137-168 1-28 (93)
204 cd07313 terB_like_2 tellurium 32.5 1.3E+02 0.0029 19.0 5.7 51 96-147 13-64 (104)
205 PF09712 PHA_synth_III_E: Poly 32.3 2.5E+02 0.0053 22.2 6.7 13 99-111 211-223 (293)
206 PRK05988 formate dehydrogenase 32.0 52 0.0011 23.3 2.7 35 27-63 41-75 (156)
207 PF06207 DUF1002: Protein of u 31.9 1.2E+02 0.0025 23.0 4.7 32 138-169 173-204 (225)
208 PF04876 Tenui_NCP: Tenuivirus 31.4 1.9E+02 0.0042 20.5 7.7 76 84-169 85-161 (175)
209 KOG4286 Dystrophin-like protei 31.4 3.5E+02 0.0077 24.6 7.9 86 63-149 393-499 (966)
210 PLN02222 phosphoinositide phos 31.1 1.7E+02 0.0037 25.6 6.0 64 80-148 23-90 (581)
211 PF09943 DUF2175: Uncharacteri 30.9 79 0.0017 20.7 3.1 39 96-135 23-61 (101)
212 KOG1264 Phospholipase C [Lipid 30.4 2E+02 0.0043 26.5 6.3 107 38-148 136-249 (1267)
213 PF09824 ArsR: ArsR transcript 30.0 94 0.002 22.1 3.6 49 115-172 68-116 (160)
214 KOG0998 Synaptic vesicle prote 29.9 67 0.0014 29.4 3.6 70 37-110 121-190 (847)
215 PF04876 Tenui_NCP: Tenuivirus 29.7 1.5E+02 0.0033 21.0 4.5 43 129-172 93-143 (175)
216 PF07308 DUF1456: Protein of u 29.7 86 0.0019 18.8 3.0 50 116-170 14-63 (68)
217 PF00046 Homeobox: Homeobox do 29.4 1.1E+02 0.0023 17.0 4.9 45 37-89 5-49 (57)
218 COG5562 Phage envelope protein 29.4 50 0.0011 22.8 2.1 25 87-111 77-101 (137)
219 cd05831 Ribosomal_P1 Ribosomal 29.3 1.6E+02 0.0034 19.3 4.4 30 134-168 16-45 (103)
220 PF11569 Homez: Homeodomain le 29.2 94 0.002 18.0 3.0 24 26-49 24-47 (56)
221 PF14821 Thr_synth_N: Threonin 29.2 1.4E+02 0.0031 18.3 4.4 30 137-168 48-77 (79)
222 PF09336 Vps4_C: Vps4 C termin 29.0 82 0.0018 18.5 2.8 26 137-166 30-55 (62)
223 PRK00034 gatC aspartyl/glutamy 29.0 1.4E+02 0.003 18.8 4.2 28 137-168 3-30 (95)
224 KOG2419 Phosphatidylserine dec 27.5 62 0.0013 28.6 2.8 64 83-148 438-533 (975)
225 PF12363 DUF3647: Phage protei 27.4 1.6E+02 0.0036 19.4 4.4 50 115-173 48-98 (113)
226 PF09373 PMBR: Pseudomurein-bi 27.1 75 0.0016 15.9 2.1 12 97-108 3-14 (33)
227 KOG4070 Putative signal transd 26.7 1.5E+02 0.0033 21.0 4.2 68 43-111 13-86 (180)
228 PRK05445 hypothetical protein; 26.3 1E+02 0.0022 22.2 3.3 29 119-147 135-163 (164)
229 PF06226 DUF1007: Protein of u 26.1 86 0.0019 23.3 3.1 26 125-151 56-81 (212)
230 PF04282 DUF438: Family of unk 25.8 1.6E+02 0.0035 17.9 6.3 50 109-167 7-56 (71)
231 smart00222 Sec7 Sec7 domain. D 25.8 1.6E+02 0.0034 21.4 4.4 43 127-172 143-185 (187)
232 PF12486 DUF3702: ImpA domain 25.6 2E+02 0.0044 20.2 4.7 24 126-150 76-99 (148)
233 COG4860 Uncharacterized protei 25.5 1.5E+02 0.0032 20.8 3.9 29 137-171 94-122 (170)
234 TIGR01958 nuoE_fam NADH-quinon 25.4 88 0.0019 21.8 2.9 36 26-63 33-68 (148)
235 TIGR01321 TrpR trp operon repr 25.2 2E+02 0.0043 18.6 4.4 34 38-73 32-65 (94)
236 KOG1954 Endocytosis/signaling 25.1 1.6E+02 0.0034 24.5 4.5 61 80-145 442-502 (532)
237 smart00389 HOX Homeodomain. DN 24.5 1.3E+02 0.0029 16.3 3.3 17 38-54 6-22 (56)
238 PF08479 POTRA_2: POTRA domain 24.4 27 0.00059 21.1 0.2 13 137-149 31-43 (76)
239 PF08044 DUF1707: Domain of un 24.4 1.5E+02 0.0032 16.8 3.5 30 132-166 20-49 (53)
240 PRK07571 bidirectional hydroge 24.0 74 0.0016 22.9 2.3 31 27-57 54-84 (169)
241 COG0776 HimA Bacterial nucleoi 23.6 1.8E+02 0.0038 18.8 3.8 32 137-173 2-33 (94)
242 PF14848 HU-DNA_bdg: DNA-bindi 23.4 2E+02 0.0044 19.3 4.3 34 133-171 26-59 (124)
243 TIGR03685 L21P_arch 50S riboso 23.1 2.3E+02 0.005 18.6 5.5 30 135-169 16-45 (105)
244 COG4840 Uncharacterized protei 22.9 1.8E+02 0.004 17.4 3.6 31 137-169 36-66 (71)
245 TIGR00987 himA integration hos 22.9 1.5E+02 0.0033 18.7 3.5 31 137-172 2-32 (96)
246 KOG1954 Endocytosis/signaling 22.9 1.5E+02 0.0033 24.6 4.1 54 49-106 448-501 (532)
247 PF06569 DUF1128: Protein of u 22.2 2E+02 0.0043 17.6 4.1 30 137-168 36-65 (71)
248 cd00481 Ribosomal_L19e Ribosom 22.0 1.3E+02 0.0028 21.1 3.1 38 9-48 5-42 (145)
249 PRK08570 rpl19e 50S ribosomal 21.9 1.3E+02 0.0029 21.2 3.2 42 5-48 4-45 (150)
250 COG5502 Uncharacterized conser 21.8 2.8E+02 0.0061 19.2 6.7 60 84-148 59-123 (135)
251 cd01418 Ribosomal_L19e_A Ribos 21.8 1.4E+02 0.003 21.0 3.2 38 9-48 5-42 (145)
252 smart00657 RPOL4c DNA-directed 21.6 1.7E+02 0.0036 19.5 3.6 28 138-169 84-111 (118)
253 COG2058 RPP1A Ribosomal protei 21.6 2.6E+02 0.0056 18.6 5.1 39 124-168 6-44 (109)
254 PF08708 PriCT_1: Primase C te 21.3 1.9E+02 0.0041 17.0 4.7 17 154-170 50-66 (71)
255 PF08339 RTX_C: RTX C-terminal 21.2 2.2E+02 0.0047 20.0 4.1 13 94-106 27-39 (145)
256 PF03672 UPF0154: Uncharacteri 21.0 2E+02 0.0044 17.1 4.0 30 137-170 32-61 (64)
257 smart00411 BHL bacterial (prok 20.4 2E+02 0.0043 17.7 3.6 30 138-172 2-31 (90)
258 PF09851 SHOCT: Short C-termin 20.4 1.3E+02 0.0028 14.8 3.6 16 133-149 14-29 (31)
259 PRK10753 transcriptional regul 20.4 2E+02 0.0044 18.0 3.6 30 138-172 2-31 (90)
260 PF10668 Phage_terminase: Phag 20.3 1.1E+02 0.0023 18.0 2.1 25 121-147 9-33 (60)
261 PF11829 DUF3349: Protein of u 20.3 2.6E+02 0.0056 18.1 6.8 63 105-172 9-71 (96)
262 COG5296 Transcription factor i 20.0 4.2E+02 0.009 22.1 6.0 52 117-169 302-353 (521)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=140.73 Aligned_cols=130 Identities=24% Similarity=0.404 Sum_probs=119.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC-chHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 33 LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 33 ~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
+...++|+.++++++++.|..+|++ ++|.|+..+|.++++..+.. +++++.+++..+|. +.+.|+|.+|+.+++..
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d--~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRD--SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcC--CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 6677899999999999999999999 99999999999999776554 67789999999999 89999999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 030614 112 HPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVL 170 (174)
Q Consensus 112 ~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~ 170 (174)
.....++++++++|++||+|++|+ |+..++..+++. .|+.+++++++.++..+=
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~-Is~~eL~~vl~~----lge~~~deev~~ll~~~d 138 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGY-ISIGELRRVLKS----LGERLSDEEVEKLLKEYD 138 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCce-ecHHHHHHHHHh----hcccCCHHHHHHHHHhcC
Confidence 876788999999999999999999 999999999998 799999999999987653
No 2
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.89 E-value=6e-22 Score=143.58 Aligned_cols=142 Identities=30% Similarity=0.517 Sum_probs=124.4
Q ss_pred CCCchHHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc--cCCCchHHHHHHHHHHcCCCCCcccHHH
Q 030614 26 GLEDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKESLFADRVFDLFDTKHNGILGFEE 103 (174)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--~~~~~~~~~~~lf~~~d~~~~g~I~~~e 103 (174)
+++.++++.+.++|++.+++.+|+-|...+ ++|.++.++|+.++.. +...+..++..+|+.||.+++|.|+|.|
T Consensus 10 ~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~~c----P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~E 85 (193)
T KOG0044|consen 10 QPESLEQLVQQTKFSKKEIQQWYRGFKNEC----PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLE 85 (193)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHhcccC----CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHH
Confidence 348899999999999999999999999987 7999999999998854 3334666799999999999999999999
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhhhc
Q 030614 104 FARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGM---NLSDDVIETIIDKVLPNL 173 (174)
Q Consensus 104 f~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~---~l~~~~i~~i~~~i~~~~ 173 (174)
|+.+++...+ +..+++++|+|++||.|++|+ |+++|+..++++++...|. +.++...++.++.+|+.+
T Consensus 86 fi~als~~~r-Gt~eekl~w~F~lyD~dgdG~-It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~ 156 (193)
T KOG0044|consen 86 FICALSLTSR-GTLEEKLKWAFRLYDLDGDGY-ITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKM 156 (193)
T ss_pred HHHHHHHHcC-CcHHHHhhhhheeecCCCCce-EcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHc
Confidence 9999999998 899999999999999999999 9999999999999887663 233556788888887754
No 3
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.88 E-value=4.1e-21 Score=139.12 Aligned_cols=149 Identities=42% Similarity=0.613 Sum_probs=130.4
Q ss_pred hhccCCCCCCCCCchHHHHHhcC----CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHH
Q 030614 16 LQCCDTNPSRGLEDPEILARETV----FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLF 91 (174)
Q Consensus 16 m~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~ 91 (174)
||+.++.... .++++.+...+. |+..|+..++.+|++++.+. ++|.++.+||..+. ....+|+..++++.|
T Consensus 1 Mg~~~s~~~~-~~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~---~~~~Np~~~rI~~~f 75 (187)
T KOG0034|consen 1 MGNLSSTLLS-DEDLEELQMYTGDPTQFSANEIERLYERFKKLDRNN-GDGYLTKEEFLSIP---ELALNPLADRIIDRF 75 (187)
T ss_pred CCcccccccc-hhhhHHHHhccCCCcccCHHHHHHHHHHHHHhcccc-ccCccCHHHHHHHH---HHhcCcHHHHHHHHH
Confidence 7777776532 467778888888 99999999999999999875 78999999999886 456788999999999
Q ss_pred cCCCCCc-ccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHH
Q 030614 92 DTKHNGI-LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS--DDVIETIIDK 168 (174)
Q Consensus 92 d~~~~g~-I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~--~~~i~~i~~~ 168 (174)
+.+++|. |+|++|+..++.+......+++++++|++||.+++|+ |+.+|+.+++..+. +...+ ++.++.++++
T Consensus 76 ~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~-I~reel~~iv~~~~---~~~~~~~~e~~~~i~d~ 151 (187)
T KOG0034|consen 76 DTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGF-ISREELKQILRMMV---GENDDMSDEQLEDIVDK 151 (187)
T ss_pred hccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCc-CcHHHHHHHHHHHH---ccCCcchHHHHHHHHHH
Confidence 9998888 9999999999999986677779999999999999999 99999999999984 44455 9999999999
Q ss_pred Hhhhc
Q 030614 169 VLPNL 173 (174)
Q Consensus 169 i~~~~ 173 (174)
+|.|+
T Consensus 152 t~~e~ 156 (187)
T KOG0034|consen 152 TFEEA 156 (187)
T ss_pred HHHHh
Confidence 99875
No 4
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.79 E-value=1.3e-18 Score=118.56 Aligned_cols=149 Identities=24% Similarity=0.371 Sum_probs=126.6
Q ss_pred hhccCCCCCCCCCchHHHHHhcCCCHHHHHHHHHHHHhhccCCCC---------CCcccHHHHHHHHhccCCCchHHHHH
Q 030614 16 LQCCDTNPSRGLEDPEILARETVFSVSEIEALYELFKKISSAVID---------DGLINKEEFQLALFKTNKKESLFADR 86 (174)
Q Consensus 16 m~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~---------~g~i~~~ef~~~l~~~~~~~~~~~~~ 86 (174)
||+..... +.+++..+..++-|+.+++.+++.+|..+.++.++ .-.++.+.... -+.+..+|+.++
T Consensus 1 MGNK~~vF--T~eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~k---MPELkenpfk~r 75 (189)
T KOG0038|consen 1 MGNKQTVF--TEEQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEK---MPELKENPFKRR 75 (189)
T ss_pred CCCcccee--eHHHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhh---ChhhhcChHHHH
Confidence 66665555 44899999999999999999999999998876322 22344443332 256678899999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 030614 87 VFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETII 166 (174)
Q Consensus 87 lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~ 166 (174)
+-..|..||.|.++|++|+.+++.++...+.+-++.++|+.||-|+|+. |..+++.+.+..+ ...++++++++.++
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~-i~~~DL~~~l~~l---Tr~eLs~eEv~~i~ 151 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEF-IGHDDLEKTLTSL---TRDELSDEEVELIC 151 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCc-ccHHHHHHHHHHH---hhccCCHHHHHHHH
Confidence 9999999999999999999999999986777789999999999999999 9999999999998 56789999999999
Q ss_pred HHHhhhc
Q 030614 167 DKVLPNL 173 (174)
Q Consensus 167 ~~i~~~~ 173 (174)
++|++||
T Consensus 152 ekvieEA 158 (189)
T KOG0038|consen 152 EKVIEEA 158 (189)
T ss_pred HHHHHHh
Confidence 9999986
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.78 E-value=9.8e-18 Score=118.69 Aligned_cols=124 Identities=23% Similarity=0.387 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCc-hHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCCh
Q 030614 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPI 117 (174)
Q Consensus 39 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~ 117 (174)
++..++..+.+.|+.+|.+ ++|+|+..++..+++.++..+ ...+..++..+|.+++|.|++.+|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d--~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKD--GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 5678889999999999999 999999999999998877664 4468999999999999999999999999877653333
Q ss_pred ----HHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 118 ----DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 118 ----~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
.+.++.+|++||+|++|+ ||.+||++++.. .|...+.++++.+++.+
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~-Is~~el~~~l~~----lg~~~~~~e~~~mi~~~ 130 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGF-ISASELKKVLTS----LGEKLTDEECKEMIREV 130 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCc-CcHHHHHHHHHH----hCCcCCHHHHHHHHHhc
Confidence 348999999999999999 999999999999 68899999999988764
No 6
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.6e-16 Score=109.95 Aligned_cols=126 Identities=21% Similarity=0.351 Sum_probs=113.6
Q ss_pred hcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCc-hHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCC
Q 030614 36 ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-SLFADRVFDLFDTKHNGILGFEEFARALSVFHPN 114 (174)
Q Consensus 36 ~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~ 114 (174)
...+++.+-+++...|..++++ ++|+|+..||..++++.+..+ ...+..+...+|+++.|+|+|++|...++.....
T Consensus 24 ~~~l~~~q~q~i~e~f~lfd~~--~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e 101 (172)
T KOG0028|consen 24 KSELTEEQKQEIKEAFELFDPD--MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE 101 (172)
T ss_pred CccccHHHHhhHHHHHHhhccC--CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc
Confidence 4567888889999999999999 999999999999998888764 4468899999999999999999999998887665
Q ss_pred CChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 115 APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 115 ~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
..+.+.+..+|+.+|.|++|. |+..+|+.+... +|++++++++.++|++
T Consensus 102 ~dt~eEi~~afrl~D~D~~Gk-is~~~lkrvake----LgenltD~El~eMIeE 150 (172)
T KOG0028|consen 102 RDTKEEIKKAFRLFDDDKTGK-ISQRNLKRVAKE----LGENLTDEELMEMIEE 150 (172)
T ss_pred cCcHHHHHHHHHcccccCCCC-cCHHHHHHHHHH----hCccccHHHHHHHHHH
Confidence 678899999999999999999 999999999999 6999999999998875
No 7
>PTZ00183 centrin; Provisional
Probab=99.72 E-value=5.7e-16 Score=109.80 Aligned_cols=126 Identities=18% Similarity=0.310 Sum_probs=109.5
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC-chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCC
Q 030614 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA 115 (174)
Q Consensus 37 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~ 115 (174)
.++++.++.++...|..+|++ ++|.|+..+|..++...+.. ....+..+|..+|.+++|.|+|.+|..++.......
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTD--GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC
Confidence 468999999999999999999 99999999999998765443 455689999999999999999999999887764435
Q ss_pred ChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 116 ~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
...+.++.+|+.+|.+++|. |+.+||..++.. .|..+++.++..++..+
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~-i~~~e~~~~l~~----~~~~l~~~~~~~~~~~~ 135 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGK-ISLKNLKRVAKE----LGETITDEELQEMIDEA 135 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCc-CcHHHHHHHHHH----hCCCCCHHHHHHHHHHh
Confidence 66778999999999999999 999999999987 57789999998887653
No 8
>PTZ00184 calmodulin; Provisional
Probab=99.70 E-value=1.2e-15 Score=106.95 Aligned_cols=125 Identities=19% Similarity=0.385 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC-chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCC
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP 116 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~ 116 (174)
.++++++..+...|..+|.+ ++|.|+.++|..++...+.. ..+.++.+|+.+|.+++|.|+|++|+.++........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKD--GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCC--CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 57889999999999999999 99999999999988654433 3456899999999999999999999999887655456
Q ss_pred hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 117 ~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
..+.++.+|+.+|.+++|. |+.+|+..++.. .|..++.++++.++..+
T Consensus 82 ~~~~~~~~F~~~D~~~~g~-i~~~e~~~~l~~----~~~~~~~~~~~~~~~~~ 129 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGF-ISAAELRHVMTN----LGEKLTDEEVDEMIREA 129 (149)
T ss_pred HHHHHHHHHHhhCCCCCCe-EeHHHHHHHHHH----HCCCCCHHHHHHHHHhc
Confidence 6678999999999999999 999999999988 57778998888887654
No 9
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.70 E-value=8.1e-16 Score=105.82 Aligned_cols=122 Identities=19% Similarity=0.329 Sum_probs=109.1
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC-chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCC
Q 030614 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA 115 (174)
Q Consensus 37 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~ 115 (174)
+.|++.+|+++.+.|..+|+| ++|.|+.++++..+.+++.. ++..+..++.. ..|.|+|.-|+.++.......
T Consensus 24 amf~q~QIqEfKEAF~~mDqn--rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gt 97 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQN--RDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGT 97 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCC
Confidence 468999999999999999999 99999999999999777654 45567777765 478999999999999988878
Q ss_pred ChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 116 ~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
.+++.+..+|+.||.+++|+ |..+.++.+|.. .|..+++++|+++.+..
T Consensus 98 dpe~~I~~AF~~FD~~~~G~-I~~d~lre~Ltt----~gDr~~~eEV~~m~r~~ 146 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGK-IDEDYLRELLTT----MGDRFTDEEVDEMYREA 146 (171)
T ss_pred CHHHHHHHHHHhcCccCCCc-cCHHHHHHHHHH----hcccCCHHHHHHHHHhC
Confidence 89999999999999999999 999999999998 79999999999987754
No 10
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.53 E-value=3e-13 Score=95.74 Aligned_cols=137 Identities=23% Similarity=0.284 Sum_probs=109.1
Q ss_pred hhhhhHhhhhhhhccCCCCCCCCCchHHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC--c--
Q 030614 5 IEGFKHLFASLLQCCDTNPSRGLEDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK--E-- 80 (174)
Q Consensus 5 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~--~-- 80 (174)
+..++.+|........+.++. .++..+.+....++.+ .++...+...|.+ ++|.|+..+|..++...... .
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~--~el~~~lr~lg~~~t~-~el~~~~~~~D~d--g~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISV--EELGAVLRSLGQNPTE-EELRDLIKEIDLD--GDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccH--HHHHHHHHHcCCCCCH-HHHHHHHHHhCCC--CCCeEcHHHHHHHHHhhhccccccc
Confidence 345677777776677777755 8888888875554333 4445555566777 99999999999988654322 1
Q ss_pred --hHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 81 --SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 81 --~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
...+.++|+.||.+++|+|+..|+..++..+.. ..+.+.+..+++..|.|++|. |+++||.+++..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~-~~~~~e~~~mi~~~d~d~dg~-i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE-KLTDEECKEMIREVDVDGDGK-VNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC-cCCHHHHHHHHHhcCCCCCCe-EeHHHHHHHHhc
Confidence 236899999999999999999999999999987 677899999999999999999 999999998753
No 11
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.51 E-value=7.1e-13 Score=93.42 Aligned_cols=134 Identities=23% Similarity=0.328 Sum_probs=106.9
Q ss_pred hhhhhHhhhhhhhccCCCCCCCCCchHHHHHhcCC--CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccC--CCc
Q 030614 5 IEGFKHLFASLLQCCDTNPSRGLEDPEILARETVF--SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN--KKE 80 (174)
Q Consensus 5 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~--~~~ 80 (174)
+..|+..|..+....++.++. .++..+.+..++ +..++.++...++. +.+.|++.+|..++.... ..+
T Consensus 19 i~~lkeaF~l~D~d~~G~I~~--~el~~ilr~lg~~~s~~ei~~l~~~~d~------~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 19 IQELKEAFQLFDRDSDGLIDR--NELGKILRSLGFNPSEAEINKLFEEIDA------GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred HHHHHHHHHHhCcCCCCCCcH--HHHHHHHHHcCCCCcHHHHHHHHHhccC------CCCccCHHHHHHHHHHHhccCCc
Confidence 456777787766666777755 889988876544 55556555554432 467899999999885432 234
Q ss_pred hHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 81 SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 81 ~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
...+..+|+.||.+++|+|+..++...+..+.. ..+++.+..+++.+|.|++|. |++++|.+.+..
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge-~~~deev~~ll~~~d~d~dG~-i~~~eF~~~~~~ 156 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGE-RLSDEEVEKLLKEYDEDGDGE-IDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc-cCCHHHHHHHHHhcCCCCCce-EeHHHHHHHHhc
Confidence 566999999999999999999999999998877 788999999999999999999 999999997653
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.50 E-value=6.2e-13 Score=96.82 Aligned_cols=112 Identities=23% Similarity=0.376 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC--chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHH
Q 030614 44 IEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKI 121 (174)
Q Consensus 44 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~ 121 (174)
-..+...|.+.|.+ ++|.|+-+|+..+|...... ....++.+...||.+.+|+|+|.||...|..+. .|
T Consensus 56 ~~~~~~~f~~vD~d--~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD--RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QW 126 (221)
T ss_pred cHHHHHHHHhhCcc--ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HH
Confidence 45788999999999 99999999999998532222 344589999999999999999999999997664 59
Q ss_pred HHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 122 EFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 122 ~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
+.+|+.||+|++|. |+..||++.|.. .|..++++-++-++++-
T Consensus 127 r~vF~~~D~D~SG~-I~~sEL~~Al~~----~Gy~Lspq~~~~lv~ky 169 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGT-IDSSELRQALTQ----LGYRLSPQFYNLLVRKY 169 (221)
T ss_pred HHHHHhcccCCCCc-ccHHHHHHHHHH----cCcCCCHHHHHHHHHHh
Confidence 99999999999999 999999999999 79999998888887763
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.50 E-value=4.8e-13 Score=112.66 Aligned_cols=115 Identities=19% Similarity=0.274 Sum_probs=98.3
Q ss_pred CCCchHHHHHh--cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccC-CCch----HHHHHHHHHHcCCCCCc
Q 030614 26 GLEDPEILARE--TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKES----LFADRVFDLFDTKHNGI 98 (174)
Q Consensus 26 ~~~~~~~~~~~--~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~----~~~~~lf~~~d~~~~g~ 98 (174)
+++.+..+... +.|+.+|++++++.|+.+|++ ++|.+ +..++...+ ..+. ++++.+|..+|.+++|.
T Consensus 122 s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d--gdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~ 195 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQEPESACESFDLLDPS--SSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQ 195 (644)
T ss_pred CHHHhhhheeecHhhccHHHHHHHHHHHHHHCCC--CCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCe
Confidence 44777777777 899999999999999999999 99986 555555555 2332 24799999999999999
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 99 I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
|+|+||+.++..+.. ..+++.++.+|+.||+|++|+ |+.+||.+++..
T Consensus 196 IdfdEFl~lL~~lg~-~~seEEL~eaFk~fDkDgdG~-Is~dEL~~vL~~ 243 (644)
T PLN02964 196 LSFSEFSDLIKAFGN-LVAANKKEELFKAADLNGDGV-VTIDELAALLAL 243 (644)
T ss_pred EcHHHHHHHHHHhcc-CCCHHHHHHHHHHhCCCCCCc-CCHHHHHHHHHh
Confidence 999999999987764 677889999999999999999 999999999988
No 14
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.49 E-value=4.5e-13 Score=90.89 Aligned_cols=124 Identities=18% Similarity=0.266 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchH-HHHHHHHHHcCC--CCCcccHHHHHHHHHhhCCC
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL-FADRVFDLFDTK--HNGILGFEEFARALSVFHPN 114 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~-~~~~lf~~~d~~--~~g~I~~~ef~~~l~~~~~~ 114 (174)
.+++++..++.+.|..+|.. ++|+|+..+...+++..+.+|.. .+......++++ +-..|+|++|+.++..+.++
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~--gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRT--GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred ccCcchHHHHHHHHHHHhcc--CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 45667778888888888888 99999999999999988776544 566666666665 44689999999999988763
Q ss_pred --CChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 115 --APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 115 --~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
..+-+.....++.||++++|. |...||+++|.. +|+.+++++++.+...
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~-i~~aeLRhvLtt----lGekl~eeEVe~Llag 132 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGT-IMGAELRHVLTT----LGEKLTEEEVEELLAG 132 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcc-eeHHHHHHHHHH----HHhhccHHHHHHHHcc
Confidence 234467778899999999999 999999999999 6999999999987653
No 15
>PTZ00183 centrin; Provisional
Probab=99.45 E-value=4.4e-12 Score=89.76 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=102.9
Q ss_pred hhhhhHhhhhhhhccCCCCCCCCCchHHHHHhcC--CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcc--CCCc
Q 030614 5 IEGFKHLFASLLQCCDTNPSRGLEDPEILARETV--FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT--NKKE 80 (174)
Q Consensus 5 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~--~~~~ 80 (174)
+..++.+|..+....++.++. +++..+.+..+ .+...+. ..|...|.+ ++|.|++.+|..++... ....
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~--~e~~~~l~~~g~~~~~~~~~---~l~~~~d~~--~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDP--KELKVAMRSLGFEPKKEEIK---QMIADVDKD--GSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccH--HHHHHHHHHhCCCCCHHHHH---HHHHHhCCC--CCCcEeHHHHHHHHHHHhcCCCc
Confidence 345677777666566666655 77877776544 4555544 445555666 99999999999876432 2233
Q ss_pred hHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 81 SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 81 ~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
...++.+|..+|.+++|.|+..||..++..... ......+..+|..+|.+++|. |+++||..++..
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~l~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGE-TITDEELQEMIDEADRNGDGE-ISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCc-CcHHHHHHHHhc
Confidence 445889999999999999999999999987654 567788999999999999999 999999988754
No 16
>PTZ00184 calmodulin; Provisional
Probab=99.36 E-value=3.3e-11 Score=84.24 Aligned_cols=133 Identities=17% Similarity=0.277 Sum_probs=99.5
Q ss_pred hhhhHhhhhhhhccCCCCCCCCCchHHHHHhcC--CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccC--CCch
Q 030614 6 EGFKHLFASLLQCCDTNPSRGLEDPEILARETV--FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN--KKES 81 (174)
Q Consensus 6 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~--~~~~ 81 (174)
..+...|..+.....+.++. +++..+....+ .+..++ ...|..++.+ ++|.|++++|..++.... ....
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~--~e~~~~l~~~~~~~~~~~~---~~~~~~~d~~--~~g~i~~~ef~~~l~~~~~~~~~~ 83 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITT--KELGTVMRSLGQNPTEAEL---QDMINEVDAD--GNGTIDFPEFLTLMARKMKDTDSE 83 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCH--HHHHHHHHHhCCCCCHHHH---HHHHHhcCcC--CCCcCcHHHHHHHHHHhccCCcHH
Confidence 44566666665556666644 77777666543 344444 4445555666 899999999998875321 1223
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHH
Q 030614 82 LFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (174)
Q Consensus 82 ~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~ 147 (174)
..+..+|+.+|.+++|.|+.++|..++..... ..+.+.+..+|+.+|.+++|. |+++||..++.
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADVDGDGQ-INYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC-CCCHHHHHHHHHhcCCCCCCc-CcHHHHHHHHh
Confidence 45789999999999999999999999987754 567788999999999999999 99999988763
No 17
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.35 E-value=8.5e-12 Score=90.77 Aligned_cols=136 Identities=16% Similarity=0.194 Sum_probs=102.1
Q ss_pred hhHhhhhhhhcc-CCCCCCCCCchHHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcc-CCCchHHHH
Q 030614 8 FKHLFASLLQCC-DTNPSRGLEDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT-NKKESLFAD 85 (174)
Q Consensus 8 ~~~~~~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~-~~~~~~~~~ 85 (174)
++...+..+..| .+.+.. ++.+.+.+...-...........|..+|.+ ++|.|++.||..++... .......++
T Consensus 28 i~~~Yr~Fk~~cP~G~~~~--~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~--~dg~i~F~Efi~als~~~rGt~eekl~ 103 (193)
T KOG0044|consen 28 IQQWYRGFKNECPSGRLTL--EEFREIYASFFPDGDASKYAELVFRTFDKN--KDGTIDFLEFICALSLTSRGTLEEKLK 103 (193)
T ss_pred HHHHHHHhcccCCCCccCH--HHHHHHHHHHCCCCCHHHHHHHHHHHhccc--CCCCcCHHHHHHHHHHHcCCcHHHHhh
Confidence 444444444444 556655 778887777644455557778888999998 99999999999887432 223444466
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhhCC----------CCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 86 RVFDLFDTKHNGILGFEEFARALSVFHP----------NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 86 ~lf~~~d~~~~g~I~~~ef~~~l~~~~~----------~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
..|+.+|.+++|.|+.+|++.++..... ...+++....+|+.+|.|+||. ||.+||......
T Consensus 104 w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~-lT~eef~~~~~~ 175 (193)
T KOG0044|consen 104 WAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGK-LTLEEFIEGCKA 175 (193)
T ss_pred hhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCc-ccHHHHHHHhhh
Confidence 7899999999999999999988776532 1236678899999999999999 999999987653
No 18
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.34 E-value=3e-11 Score=95.32 Aligned_cols=121 Identities=22% Similarity=0.343 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCC--CchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCC
Q 030614 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK--KESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP 116 (174)
Q Consensus 39 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~ 116 (174)
.+++.-.++...|+.+|.+ ++|.++..++...+..... .+...++.+|..+|.+.+|.++|.||...+ ..
T Consensus 8 ~~~er~~r~~~lf~~lD~~--~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~------~~ 79 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSK--NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYL------DN 79 (463)
T ss_pred CcHHHHHHHHHHHHHhccC--CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHH------HH
Confidence 3444456677788888888 9999999999988755433 234468899999999999999999999988 45
Q ss_pred hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 117 ~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
.+.++..+|...|.++||. |..+|+.+.++. .|.++++++++.++..++..
T Consensus 80 ~E~~l~~~F~~iD~~hdG~-i~~~Ei~~~l~~----~gi~l~de~~~k~~e~~d~~ 130 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGK-IDPNEIWRYLKD----LGIQLSDEKAAKFFEHMDKD 130 (463)
T ss_pred hHHHHHHHHhhhccccCCc-cCHHHHHHHHHH----hCCccCHHHHHHHHHHhccC
Confidence 5778999999999999999 999999999999 69999999999999888753
No 19
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=1.1e-09 Score=76.19 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=100.0
Q ss_pred hhHhhhhhhhccCCCCCCCCCchHHHHHhcCCC--HHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcc-CC-CchHH
Q 030614 8 FKHLFASLLQCCDTNPSRGLEDPEILARETVFS--VSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT-NK-KESLF 83 (174)
Q Consensus 8 ~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~-~~-~~~~~ 83 (174)
++..|..++-...+.+-. .+++-..++..|. .+++.++..-+ |.+ ++|+|++++|...+... +. .+...
T Consensus 35 i~e~f~lfd~~~~g~iD~--~EL~vAmralGFE~~k~ei~kll~d~---dk~--~~g~i~fe~f~~~mt~k~~e~dt~eE 107 (172)
T KOG0028|consen 35 IKEAFELFDPDMAGKIDV--EELKVAMRALGFEPKKEEILKLLADV---DKE--GSGKITFEDFRRVMTVKLGERDTKEE 107 (172)
T ss_pred HHHHHHhhccCCCCcccH--HHHHHHHHHcCCCcchHHHHHHHHhh---hhc--cCceechHHHHHHHHHHHhccCcHHH
Confidence 344444444333444433 5665556666665 45556665544 444 89999999999886542 22 25557
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
+..+|+.+|-+++|+|++.+|+.....+.+ ..+++.++...+-+|.+++|. |+.+||..+++.
T Consensus 108 i~~afrl~D~D~~Gkis~~~lkrvakeLge-nltD~El~eMIeEAd~d~dge-vneeEF~~imk~ 170 (172)
T KOG0028|consen 108 IKKAFRLFDDDKTGKISQRNLKRVAKELGE-NLTDEELMEMIEEADRDGDGE-VNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHcccccCCCCcCHHHHHHHHHHhCc-cccHHHHHHHHHHhccccccc-ccHHHHHHHHhc
Confidence 999999999999999999999999999987 788999999999999999999 999999998764
No 20
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.14 E-value=1.9e-09 Score=78.36 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=75.1
Q ss_pred HHHhhccCCCCCCc-ccHHHHHHHHhc--cCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCCh------HHH
Q 030614 50 LFKKISSAVIDDGL-INKEEFQLALFK--TNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPI------DDK 120 (174)
Q Consensus 50 ~F~~~d~~~~~~g~-i~~~ef~~~l~~--~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~------~~~ 120 (174)
+++.++.+ ++|. |++++|...+.. +......-++-+|+.||.+++|.|+.+|+..++..+...... ++.
T Consensus 71 I~~~f~~~--~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 71 IIDRFDTD--GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHhcc--CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 34444544 6666 999999998743 222233347789999999999999999999999988774333 245
Q ss_pred HHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 121 IEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 121 ~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
+..+|..+|.|+||+ |+++|+..++..
T Consensus 149 ~d~t~~e~D~d~DG~-IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGK-ISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHhCCCCCCc-CcHHHHHHHHHc
Confidence 678999999999999 999999999865
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.09 E-value=3e-10 Score=68.94 Aligned_cols=61 Identities=26% Similarity=0.403 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCC---CChHHHHHHHHHHhcCCCCCccccHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPN---APIDDKIEFSFQLYDLKQQGFFIERQEVKQM 145 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~---~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~ 145 (174)
++.+|+.+|.+++|.|+.+||..++...... ...++.+..+|+.+|+|++|. |+++||..+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~-i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGR-ISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSS-EEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCC-CcHHHHhcc
Confidence 4567777777777777777777777666531 123345666677777777777 777777765
No 22
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.97 E-value=1.4e-08 Score=74.21 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=97.7
Q ss_pred HhhhhhhhccCCCCCCCCCchHHHHH---hcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHH
Q 030614 10 HLFASLLQCCDTNPSRGLEDPEILAR---ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADR 86 (174)
Q Consensus 10 ~~~~~~m~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 86 (174)
..+-.+.....+++.. +|+++... -..|+.+.++-+...|++. .+|+|+++||....... ..++.
T Consensus 61 ~~f~~vD~d~sg~i~~--~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~-----~~G~i~f~EF~~Lw~~i-----~~Wr~ 128 (221)
T KOG0037|consen 61 GWFQSVDRDRSGRILA--KELQQALSNGTWSPFSIETCRLMISMFDRD-----NSGTIGFKEFKALWKYI-----NQWRN 128 (221)
T ss_pred HHHHhhCccccccccH--HHHHHHhhcCCCCCCCHHHHHHHHHHhcCC-----CCCccCHHHHHHHHHHH-----HHHHH
Confidence 3344444434445543 66666544 3589999999999988765 89999999999654222 23789
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 87 VFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 87 lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
+|+.+|.|++|.|+..|+..++..+.- ....+.++.+++.||..++|. |.+++|.+.+..+
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy-~Lspq~~~~lv~kyd~~~~g~-i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGY-RLSPQFYNLLVRKYDRFGGGR-IDFDDFIQCCVVL 189 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCc-CCCHHHHHHHHHHhccccCCc-eeHHHHHHHHHHH
Confidence 999999999999999999999998876 677888999999999888999 9999998876554
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.93 E-value=6.2e-09 Score=63.10 Aligned_cols=61 Identities=36% Similarity=0.586 Sum_probs=50.6
Q ss_pred HHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC-----chHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 030614 46 ALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-----ESLFADRVFDLFDTKHNGILGFEEFARAL 108 (174)
Q Consensus 46 ~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-----~~~~~~~lf~~~d~~~~g~I~~~ef~~~l 108 (174)
++...|+.+|.+ ++|+|+.+||..++...+.. ....++.+|+.+|.+++|.|+|+||..++
T Consensus 1 ~l~~~F~~~D~d--~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKD--GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTT--SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCC--ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 366788899999 99999999999998765432 23357788999999999999999999764
No 24
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.90 E-value=1.7e-08 Score=65.92 Aligned_cols=70 Identities=20% Similarity=0.396 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 39 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
+|++++..+...|..+|.+ ++|.|+..++..++...+ .+...+..++..+|.+++|.|+|+||+.++..+
T Consensus 4 ls~~~~~~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~-~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKN--QDGTVTGAQAKPILLKSG-LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCHHHHHHHHHHHHHhCCC--CCCeEeHHHHHHHHHHcC-CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 5666667777777777766 677777777776665433 233446666666666666677777776665543
No 25
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.3e-08 Score=78.36 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC--chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCC-hH
Q 030614 42 SEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP-ID 118 (174)
Q Consensus 42 ~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~-~~ 118 (174)
+.+..-.++|+..|.| ++|.++.+||.+.|.+-... ....++.-+...|+|++|+|+++||+.-+..-..+.. ++
T Consensus 160 km~~rDe~rFk~AD~d--~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epe 237 (325)
T KOG4223|consen 160 KMIARDEERFKAADQD--GDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPE 237 (325)
T ss_pred HHHHHHHHHHhhcccC--CCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcc
Confidence 3455557899999999 99999999999887543322 2224788888999999999999999998876654211 11
Q ss_pred ---HHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 030614 119 ---DKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETII 166 (174)
Q Consensus 119 ---~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~ 166 (174)
..-...+..+|+|+||+ ++.+|+.+.+.- .+......++..++
T Consensus 238 Wv~~Ere~F~~~~DknkDG~-L~~dEl~~WI~P----~~~d~A~~EA~hL~ 283 (325)
T KOG4223|consen 238 WVLTEREQFFEFRDKNKDGK-LDGDELLDWILP----SEQDHAKAEARHLL 283 (325)
T ss_pred cccccHHHHHHHhhcCCCCc-cCHHHHhcccCC----CCccHHHHHHHHHh
Confidence 12357889999999999 999999987643 33334445555554
No 26
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.86 E-value=2.3e-08 Score=64.31 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhcc-CCCCCCcccHHHHHHHHhc-cCC-Cch-HHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 030614 44 IEALYELFKKISS-AVIDDGLINKEEFQLALFK-TNK-KES-LFADRVFDLFDTKHNGILGFEEFARALSV 110 (174)
Q Consensus 44 i~~l~~~F~~~d~-~~~~~g~i~~~ef~~~l~~-~~~-~~~-~~~~~lf~~~d~~~~g~I~~~ef~~~l~~ 110 (174)
+..+...|+.+|. + ++|+|+..||+.++.. .+. ... ..++.+++.+|.|++|.|+|+||+.++..
T Consensus 7 i~~l~~~F~~fd~~~--~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 7 IETLVSNFHKASVKG--GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHhCCC--CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3444455555554 4 5555555555555543 221 112 34555555555555555555555555443
No 27
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.79 E-value=3.8e-08 Score=63.29 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=57.8
Q ss_pred HHHHHHHHcC-CCCCcccHHHHHHHHHh-hCCCCChH-HHHHHHHHHhcCCCCCccccHHHHHHHHHHHHH
Q 030614 84 ADRVFDLFDT-KHNGILGFEEFARALSV-FHPNAPID-DKIEFSFQLYDLKQQGFFIERQEVKQMVVATLA 151 (174)
Q Consensus 84 ~~~lf~~~d~-~~~g~I~~~ef~~~l~~-~~~~~~~~-~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~ 151 (174)
+..+|+.||. +++|.|+..|+..++.. +.. ...+ +.++.+++..|.|+||. |+++||..++..+..
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~-~ls~~~~v~~mi~~~D~d~DG~-I~F~EF~~l~~~l~~ 78 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPH-LLKDVEGLEEKMKNLDVNQDSK-LSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh-hccCHHHHHHHHHHhCCCCCCC-CcHHHHHHHHHHHHH
Confidence 6789999999 99999999999999988 543 3444 78999999999999999 999999999988743
No 28
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.76 E-value=8.3e-08 Score=61.66 Aligned_cols=65 Identities=22% Similarity=0.396 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhc-cCCCCCC-cccHHHHHHHHhc-----cCCCc-hHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 030614 44 IEALYELFKKIS-SAVIDDG-LINKEEFQLALFK-----TNKKE-SLFADRVFDLFDTKHNGILGFEEFARALSV 110 (174)
Q Consensus 44 i~~l~~~F~~~d-~~~~~~g-~i~~~ef~~~l~~-----~~~~~-~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~ 110 (174)
+..+.+.|+.+| .+ ++| .|+..+|+.++.. .+... ...++.+++.+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~aF~~fD~~d--gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 7 MVALIDVFHQYSGRE--GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhcccC--CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 445555566555 45 566 3666666666654 33222 233666666666666666666666655543
No 29
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.75 E-value=1e-07 Score=61.86 Aligned_cols=66 Identities=20% Similarity=0.470 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhc-cCCCCCC-cccHHHHHHHHhcc------CCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 44 IEALYELFKKIS-SAVIDDG-LINKEEFQLALFKT------NKKESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 44 i~~l~~~F~~~d-~~~~~~g-~i~~~ef~~~l~~~------~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
+..+.+.|+.+| .+ ++| .|+..||+.++... .......+..+++.+|.+++|.|+|+||+.++..+
T Consensus 9 ~~~~~~~F~~~dd~d--gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKE--GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 445555566555 34 565 47777777666331 11123346667777777777777777776666544
No 30
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.75 E-value=9.4e-08 Score=62.38 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHh-cCCCCCH
Q 030614 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAE-SGMNLSD 159 (174)
Q Consensus 83 ~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~-~~~~l~~ 159 (174)
.+..+|..+|.+++|.|++.++..++... +.+++.++.+|+.+|.+++|. |+++||..++..+... .|..++.
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~-I~~~eF~~~~~~~~~~~~g~~~~~ 84 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGE-LDKDEFALAMHLIYRKLNGYPIPA 84 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCC-cCHHHHHHHHHHHHHHHcCCCCCc
Confidence 47889999999999999999999999874 356678999999999999999 9999999998877543 4666654
No 31
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.75 E-value=2.2e-07 Score=73.88 Aligned_cols=138 Identities=23% Similarity=0.271 Sum_probs=100.3
Q ss_pred hhHhhhhhhhccCCCCCCCCCchHHHH---HhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHH
Q 030614 8 FKHLFASLLQCCDTNPSRGLEDPEILA---RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFA 84 (174)
Q Consensus 8 ~~~~~~~~m~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~ 84 (174)
++.+|..+.-...+.+ .+.++. .......-.-......|...|.+ ++|.++++||.+.+... ...+
T Consensus 16 ~~~lf~~lD~~~~g~~-----d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~--~dg~vDy~eF~~Y~~~~----E~~l 84 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQV-----DLDQLEKGLEKLDHPKPNYEAAKMLFSAMDAN--RDGRVDYSEFKRYLDNK----ELEL 84 (463)
T ss_pred HHHHHHHhccCCCCce-----eHHHHHHHHHhcCCCCCchHHHHHHHHhcccC--cCCcccHHHHHHHHHHh----HHHH
Confidence 4566666544333333 344444 22222222334556677788888 99999999999987432 2236
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 030614 85 DRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIET 164 (174)
Q Consensus 85 ~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~ 164 (174)
.++|...|.+.||.|+..|.-..+....- ...++++..+|+..|+++++. |+.+|+.+.+.. .+...+++
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi-~l~de~~~k~~e~~d~~g~~~-I~~~e~rd~~ll--------~p~s~i~d 154 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLGI-QLSDEKAAKFFEHMDKDGKAT-IDLEEWRDHLLL--------YPESDLED 154 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhCC-ccCHHHHHHHHHHhccCCCee-eccHHHHhhhhc--------CChhHHHH
Confidence 78999999999999999999999988876 677889999999999999999 999999998643 33555555
Q ss_pred HH
Q 030614 165 II 166 (174)
Q Consensus 165 i~ 166 (174)
+.
T Consensus 155 i~ 156 (463)
T KOG0036|consen 155 IY 156 (463)
T ss_pred HH
Confidence 53
No 32
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.72 E-value=1e-07 Score=55.90 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMV 146 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l 146 (174)
+..+|..+|.+++|.|++.+|..++..... ..+.+.+..+|+.+|.+++|. |++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE-GLSEEEIDEMIREVDKDGDGK-IDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCe-EeHHHHHHHh
Confidence 356788888888888888888888877654 556677788888888888888 8888887654
No 33
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.69 E-value=1.5e-07 Score=60.42 Aligned_cols=67 Identities=22% Similarity=0.392 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcc--CCCCCCcccHHHHHHHHhc-cCCC-----chHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 030614 42 SEIEALYELFKKISS--AVIDDGLINKEEFQLALFK-TNKK-----ESLFADRVFDLFDTKHNGILGFEEFARALSV 110 (174)
Q Consensus 42 ~~i~~l~~~F~~~d~--~~~~~g~i~~~ef~~~l~~-~~~~-----~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~ 110 (174)
+++..+...|..+|. + ++|.|+.++|..++.. .+.. ....+..++..+|.+++|.|+|++|+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~~~--~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 5 KAIETIIDVFHKYSGKEG--DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHhhccC--CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 455666666777766 6 6777777777776643 1111 2345667777777777777777777766643
No 34
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.68 E-value=2.2e-07 Score=59.72 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=57.3
Q ss_pred HHHHHHHHHc-CCCCC-cccHHHHHHHHHh-----hCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 83 FADRVFDLFD-TKHNG-ILGFEEFARALSV-----FHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 83 ~~~~lf~~~d-~~~~g-~I~~~ef~~~l~~-----~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
.+..+|+.|| .+++| .|+..|+..++.. ... ..+++.+..+++..|.|++|. |+++||..++..+.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~-~~~~~~v~~~i~~~D~n~dG~-v~f~eF~~li~~~~ 81 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE-IKEQEVVDKVMETLDSDGDGE-CDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC-CCCHHHHHHHHHHhCCCCCCc-CcHHHHHHHHHHHH
Confidence 3678999998 79999 5999999999998 433 456778999999999999999 99999999988764
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.67 E-value=1.7e-07 Score=56.68 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 86 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 86 ~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
.+|..+|.+++|.|+.+|+..++... +.+.+.++.+|+.+|.+++|. |+++||..++..
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~---g~~~~~~~~i~~~~d~~~~g~-i~~~ef~~~~~~ 61 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKS---GLPRSVLAQIWDLADTDKDGK-LDKEEFAIAMHL 61 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCc-CCHHHHHHHHHH
Confidence 34555555555555555555444432 123344455555555555555 555555554443
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.67 E-value=2.3e-07 Score=56.02 Aligned_cols=60 Identities=32% Similarity=0.489 Sum_probs=52.1
Q ss_pred HHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 49 ELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 49 ~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
..|..+|.+ ++|.|+.+|+..++...+. +...++.++..+|.+++|.|+|.+|+.++...
T Consensus 3 ~~F~~~D~~--~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 3 QIFRSLDPD--GDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHhCCC--CCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 568888888 9999999999999876654 56678999999999999999999999988654
No 37
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.67 E-value=1e-07 Score=55.35 Aligned_cols=51 Identities=27% Similarity=0.425 Sum_probs=32.1
Q ss_pred CCcccHHHHHHHHHhhCCCC-ChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 96 NGILGFEEFARALSVFHPNA-PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 96 ~g~I~~~ef~~~l~~~~~~~-~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
+|.|+.++|..++..+.. . ..++.+..+|+.+|.|++|. |+++||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~-~~~s~~e~~~l~~~~D~~~~G~-I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGI-KDLSEEEVDRLFREFDTDGDGY-ISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTS-SSSCHHHHHHHHHHHTTSSSSS-EEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCC-CCCCHHHHHHHHHhcccCCCCC-CCHHHHHHHHHh
Confidence 466677777666644433 3 45555667777777777777 777777666543
No 38
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.64 E-value=4.8e-07 Score=72.63 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=89.7
Q ss_pred HHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCC-----CC---
Q 030614 45 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPN-----AP--- 116 (174)
Q Consensus 45 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~-----~~--- 116 (174)
.++.+.|...|++ ++|+++..++..++.......-|+...--+....+.+|++.|.+.+..+..-... ..
T Consensus 464 sdL~~eF~~~D~~--ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPK--KSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChh--hcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 4556788889998 9999999999999865433334443334445556678889988887766432210 00
Q ss_pred ---hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 117 ---IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 117 ---~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
-...++.+|+.+|.|++|. ||.+||..+++.+.++.+..++++++-++.+.|
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~-isldEF~~a~~l~~sh~~~~i~~~~i~~la~~m 596 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGE-ISLDEFRTAWKLLSSHMNGAISDDEILELARSM 596 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCc-eeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhh
Confidence 0124678999999999999 999999999998877788889999998887654
No 39
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.63 E-value=8.9e-07 Score=79.60 Aligned_cols=106 Identities=15% Similarity=0.318 Sum_probs=89.9
Q ss_pred hcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCC--------CchHHHHHHHHHHcCCCCCcccHHHHHHH
Q 030614 36 ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK--------KESLFADRVFDLFDTKHNGILGFEEFARA 107 (174)
Q Consensus 36 ~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~--------~~~~~~~~lf~~~d~~~~g~I~~~ef~~~ 107 (174)
.++.|.+++.++.-.|+.+|.+ .+|.++..+|..||++.+. .|.|..++++...|++.+|+|+..+|+.+
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDke--k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~af 2321 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKE--KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAF 2321 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchh--hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHH
Confidence 3688999999999999999999 9999999999999976442 26778999999999999999999999998
Q ss_pred HHhhCC-CCChHHHHHHHHHHhcCCCCCccccHHHHHHH
Q 030614 108 LSVFHP-NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQM 145 (174)
Q Consensus 108 l~~~~~-~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~ 145 (174)
|...-. +-...+.|..+|+..|. +.-+ |+++++.+-
T Consensus 2322 mi~~ETeNI~s~~eIE~AfraL~a-~~~y-vtke~~~~~ 2358 (2399)
T KOG0040|consen 2322 MISKETENILSSEEIEDAFRALDA-GKPY-VTKEELYQN 2358 (2399)
T ss_pred HHhcccccccchHHHHHHHHHhhc-CCcc-ccHHHHHhc
Confidence 865432 23455689999999998 8889 999988544
No 40
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.63 E-value=3.2e-07 Score=59.57 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=55.4
Q ss_pred HHHHHHHHc-CCCCC-cccHHHHHHHHHhhC----CCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 84 ADRVFDLFD-TKHNG-ILGFEEFARALSVFH----PNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 84 ~~~lf~~~d-~~~~g-~I~~~ef~~~l~~~~----~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
+.++|..|| .+++| +|+..|+..++.... ........+..+++.+|.|++|. |+++||..++..+.
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~-Idf~EF~~l~~~l~ 83 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNE-VDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHHHH
Confidence 667899999 68998 599999999996632 21345678999999999999999 99999999998864
No 41
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.63 E-value=4e-07 Score=58.93 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=38.7
Q ss_pred HHHHHHHHc-CCCCC-cccHHHHHHHHHh-hC---CCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 84 ADRVFDLFD-TKHNG-ILGFEEFARALSV-FH---PNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 84 ~~~lf~~~d-~~~~g-~I~~~ef~~~l~~-~~---~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
+.++|+.|| .+++| .|+..|+..++.. +. ....+++.++.+|+.+|.|++|. |+++||..++..+
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~-I~f~eF~~l~~~~ 81 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGE-VDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCc-CcHHHHHHHHHHH
Confidence 556666664 66666 3666666666643 21 11234456666666666666666 6666666666554
No 42
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.60 E-value=5.8e-07 Score=57.72 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc---cCCC-chHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFK---TNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~---~~~~-~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
.+..+...|+.++.+.+++|.|+.+||+.++.. .+.. ....+..+++.+|.+++|.|+|+||+..+..+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 345555666666652113667777777777641 2222 34456777777777777777777777666543
No 43
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.59 E-value=3.9e-07 Score=59.24 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=40.7
Q ss_pred HHHHHHHHcC-CC-CCcccHHHHHHHHHhhC----CCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 84 ADRVFDLFDT-KH-NGILGFEEFARALSVFH----PNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 84 ~~~lf~~~d~-~~-~g~I~~~ef~~~l~~~~----~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
+..+|..||. ++ +|.|+..|+..++.... ....+++.++.+++.+|.+++|. |+++||..++..
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~-I~f~eF~~l~~~ 79 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGK-VNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCc-CcHHHHHHHHHH
Confidence 4566777765 65 57777777776665411 11334566777777777777777 777777766654
No 44
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.57 E-value=8.4e-08 Score=48.47 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 121 IEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 121 ~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
++.+|+.||+|++|+ |+++||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~-I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGK-IDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSE-EEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCc-CCHHHHHHHHHh
Confidence 567888888888888 888888887765
No 45
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.56 E-value=4.5e-07 Score=58.67 Aligned_cols=66 Identities=23% Similarity=0.400 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhc-cCCCCCC-cccHHHHHHHHhc-cCC-----CchHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 44 IEALYELFKKIS-SAVIDDG-LINKEEFQLALFK-TNK-----KESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 44 i~~l~~~F~~~d-~~~~~~g-~i~~~ef~~~l~~-~~~-----~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
+..+.+.|+.+| .+ ++| .|+..|+..++.. .+. .+...++.+++.+|.+++|.|+|++|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~d--g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKE--GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhccc--CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 456777788886 77 999 4999999999854 221 234569999999999999999999999888655
No 46
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.56 E-value=2.9e-07 Score=53.46 Aligned_cols=50 Identities=40% Similarity=0.617 Sum_probs=42.2
Q ss_pred CCCcccHHHHHHHHhccCCC--chHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 030614 60 DDGLINKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILGFEEFARALS 109 (174)
Q Consensus 60 ~~g~i~~~ef~~~l~~~~~~--~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~ 109 (174)
++|.|+.++|..++...+.. ....+..+|..+|.+++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47899999999999554433 344599999999999999999999999875
No 47
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.55 E-value=4.8e-07 Score=57.98 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=55.3
Q ss_pred HHHHHHHHcC--CCCCcccHHHHHHHHHhhCCC----CChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 84 ADRVFDLFDT--KHNGILGFEEFARALSVFHPN----APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 84 ~~~lf~~~d~--~~~g~I~~~ef~~~l~~~~~~----~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
+..+|..+|. +++|.|+..++..++....+. ....+.++.+++.+|.+++|. |++++|..++..+
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~-I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGK-VDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCc-CcHHHHHHHHHHH
Confidence 6789999999 899999999999998753221 124778999999999999999 9999999998774
No 48
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.54 E-value=8e-07 Score=57.75 Aligned_cols=66 Identities=18% Similarity=0.420 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhcc-CCCC-CCcccHHHHHHHHhc-----cCCC-chHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 44 IEALYELFKKISS-AVID-DGLINKEEFQLALFK-----TNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 44 i~~l~~~F~~~d~-~~~~-~g~i~~~ef~~~l~~-----~~~~-~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
...+...|..+|. + + +|.|+..|+..++.. .+.. +...++.+++.+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~d--g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKD--GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccC--CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4567778888876 6 7 699999999998864 2222 45568999999999999999999999877644
No 49
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.53 E-value=9.2e-07 Score=56.90 Aligned_cols=68 Identities=26% Similarity=0.407 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHh-hccCCCCCC-cccHHHHHHHHhccC------CCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 42 SEIEALYELFKK-ISSAVIDDG-LINKEEFQLALFKTN------KKESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 42 ~~i~~l~~~F~~-~d~~~~~~g-~i~~~ef~~~l~~~~------~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
..+..+...|+. .+.+ ++| .|+.+||..++.... ......+..+++.+|.+++|.|+|+||+.++..+
T Consensus 6 ~~i~~l~~~F~~y~~~d--g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKD--GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccC--CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 345666677776 4444 444 788888887764321 1123457777777777777777777777766543
No 50
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.52 E-value=1.4e-06 Score=70.25 Aligned_cols=108 Identities=21% Similarity=0.378 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHH----cCCCCCcccHHHHHHHHHhhCC
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLF----DTKHNGILGFEEFARALSVFHP 113 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~----d~~~~g~I~~~ef~~~l~~~~~ 113 (174)
-|+.+....++..|-.+|.+ .+|.++++++...- -+.....+++++|... -...+|+++|++|+.++-..-.
T Consensus 271 ~FS~e~f~viy~kFweLD~D--hd~lidk~~L~ry~--d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~ 346 (493)
T KOG2562|consen 271 YFSYEHFYVIYCKFWELDTD--HDGLIDKEDLKRYG--DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED 346 (493)
T ss_pred heeHHHHHHHHHHHhhhccc--cccccCHHHHHHHh--ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc
Confidence 57778888889999999999 99999999998542 2223466799999933 3346899999999998877765
Q ss_pred CCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHH
Q 030614 114 NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLA 151 (174)
Q Consensus 114 ~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~ 151 (174)
....+-+++.|+..|.+++|. |+.+|+..+....++
T Consensus 347 -k~t~~SleYwFrclDld~~G~-Lt~~el~~fyeeq~~ 382 (493)
T KOG2562|consen 347 -KDTPASLEYWFRCLDLDGDGI-LTLNELRYFYEEQLQ 382 (493)
T ss_pred -CCCccchhhheeeeeccCCCc-ccHHHHHHHHHHHHH
Confidence 677788999999999999999 999999999888765
No 51
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.50 E-value=1e-06 Score=59.39 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMV 146 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l 146 (174)
+...|..+|.|++|.|+..|+..+. + ...+..+..+|+.+|.|+||. ||.+||...+
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~-IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGS-ISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCC-CCHHHHHHHH
Confidence 5566677777777777777766544 1 334555666677777777777 7777766666
No 52
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.49 E-value=1.1e-06 Score=56.46 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=55.8
Q ss_pred HHHHHHHHcC-CC-CCcccHHHHHHHHHhh--CCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 84 ADRVFDLFDT-KH-NGILGFEEFARALSVF--HPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 84 ~~~lf~~~d~-~~-~g~I~~~ef~~~l~~~--~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
+-.+|..|+. ++ +|.|+.+||..++... .....+++.+..+|+..|.|++|. |+++||..++..+.
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~-Idf~EFv~lm~~l~ 81 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQE-VNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCC-CcHHHHHHHHHHHH
Confidence 4578999998 66 7999999999999642 222567889999999999999999 99999999988764
No 53
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.44 E-value=1.3e-06 Score=58.97 Aligned_cols=64 Identities=13% Similarity=0.220 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 030614 40 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARAL 108 (174)
Q Consensus 40 ~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l 108 (174)
.+.....+.-.|..+|.| ++|.|+.+|+..+. .......+..+|..+|.+++|.||++||+.++
T Consensus 43 ~~~~~~~l~w~F~~lD~d--~DG~Ls~~EL~~~~---l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGN--YDGKLSHHELAPIR---LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCC--CCCcCCHHHHHHHH---ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 566778889999999999 99999999999766 22345568899999999999999999999988
No 54
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.39 E-value=2.7e-06 Score=54.61 Aligned_cols=68 Identities=26% Similarity=0.379 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc-cCC-Cc----hHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 030614 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFK-TNK-KE----SLFADRVFDLFDTKHNGILGFEEFARALSV 110 (174)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~-~~----~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~ 110 (174)
.+..+...|+..+.+.+++|.|+..||..++.. .+. .. ...++.+|+.+|.+++|.|+|++|+.++..
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 345566666666654223567777777776632 111 11 344666666666666667777776666543
No 55
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.39 E-value=1.9e-06 Score=50.31 Aligned_cols=60 Identities=27% Similarity=0.397 Sum_probs=49.6
Q ss_pred HHHHHHhhccCCCCCCcccHHHHHHHHhccCC-CchHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 030614 47 LYELFKKISSAVIDDGLINKEEFQLALFKTNK-KESLFADRVFDLFDTKHNGILGFEEFARAL 108 (174)
Q Consensus 47 l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l 108 (174)
+...|+..|.+ ++|.++.++|..++...+. .+.+.+..+|..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~--~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKD--GDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCC--CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 44567778888 9999999999999876543 355668899999999999999999998764
No 56
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.38 E-value=1.7e-06 Score=62.67 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=83.2
Q ss_pred hHHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHH-HHHHHHHHcCCCCCcccHHHHHHHH
Q 030614 30 PEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLF-ADRVFDLFDTKHNGILGFEEFARAL 108 (174)
Q Consensus 30 ~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~-~~~lf~~~d~~~~g~I~~~ef~~~l 108 (174)
..-+.+...||..+|++++..|+.+|.+ .+|+|+..|++..+..++..+... ++.+....|.|.+|+|+|.||+-++
T Consensus 84 ~n~yteF~eFsrkqIk~~~~~Fk~yDe~--rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 84 FNVYTEFSEFSRKQIKDAESMFKQYDED--RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhccc--ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 3345556689999999999999999999 999999999999887766655554 7889999999999999999999888
Q ss_pred HhhCCCCC-hHHHHHHHHHH--hcCCCCCccccHHHHHH
Q 030614 109 SVFHPNAP-IDDKIEFSFQL--YDLKQQGFFIERQEVKQ 144 (174)
Q Consensus 109 ~~~~~~~~-~~~~~~~~F~~--~D~~~~G~~I~~~el~~ 144 (174)
........ .+..+..+=+. .|...-|+ .-..-|-+
T Consensus 162 rkaaagEL~~ds~~~~LAr~~eVDVskeGV-~GAknFFe 199 (244)
T KOG0041|consen 162 RKAAAGELQEDSGLLRLARLSEVDVSKEGV-SGAKNFFE 199 (244)
T ss_pred HHHhccccccchHHHHHHHhcccchhhhhh-hhHHHHHH
Confidence 76654222 22233333344 67777777 55544443
No 57
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.37 E-value=3.3e-06 Score=54.31 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=54.5
Q ss_pred HHHHHHH-HcCCCCC-cccHHHHHHHHHhhCC----CCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 84 ADRVFDL-FDTKHNG-ILGFEEFARALSVFHP----NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 84 ~~~lf~~-~d~~~~g-~I~~~ef~~~l~~~~~----~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
+..+|.. +|.+++| .|+.+||..++....+ .......+..+++.+|.|+||. |+++||..++..+.
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~-I~f~EF~~l~~~l~ 82 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQ-LDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCc-CcHHHHHHHHHHHH
Confidence 5678888 6677765 9999999999987642 1334578999999999999999 99999999988764
No 58
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.32 E-value=3.7e-05 Score=53.60 Aligned_cols=131 Identities=17% Similarity=0.213 Sum_probs=101.6
Q ss_pred hhhhhHhhhhhhhccCCCCCCCCCchHHHHHhc--CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcc--CCCc
Q 030614 5 IEGFKHLFASLLQCCDTNPSRGLEDPEILARET--VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT--NKKE 80 (174)
Q Consensus 5 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~--~~~~ 80 (174)
|-.++..|+.+..+.++-+-. +.++.....- ..+.+++..+.. . .+|.|++.-|...+... +..|
T Consensus 31 IqEfKEAF~~mDqnrDG~Idk--eDL~d~~aSlGk~~~d~elDaM~~----E-----a~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDK--EDLRDMLASLGKIASDEELDAMMK----E-----APGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHHHHHHHHHHhccCCCcccH--HHHHHHHHHcCCCCCHHHHHHHHH----h-----CCCCeeHHHHHHHHHHHhcCCCH
Confidence 456777788777777777744 7777766542 456666555542 2 67889999999887442 3345
Q ss_pred hHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 81 SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 81 ~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
...+...|..||.+++|+|.-+.+...|..... .-.++++..+|+.+-.+..|. |.+..|..++..
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD-r~~~eEV~~m~r~~p~d~~G~-~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD-RFTDEEVDEMYREAPIDKKGN-FDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc-cCCHHHHHHHHHhCCcccCCc-eeHHHHHHHHHc
Confidence 556889999999999999999999999988765 667889999999999999999 999999999874
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.30 E-value=1.2e-06 Score=44.15 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHh
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSV 110 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~ 110 (174)
++.+|+.+|.|++|+|+++||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 578999999999999999999988864
No 60
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=4.1e-06 Score=64.87 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCC-CchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCC---------
Q 030614 44 IEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-KESLFADRVFDLFDTKHNGILGFEEFARALSVFHP--------- 113 (174)
Q Consensus 44 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~--------- 113 (174)
-..+...+..+|.+ ++|.|+.+|+...+..... .......+-+..+|.+.+|.|+|+|+....+....
T Consensus 76 ~~rl~~l~~~iD~~--~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 76 QERLGKLVPKIDSD--SDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred HHHHHHHHhhhcCC--CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 35677788888887 9999999999987643322 22334677888999999999999999988875321
Q ss_pred CCC----hHHHHHHHHHHhcCCCCCccccHHHHHHHH
Q 030614 114 NAP----IDDKIEFSFQLYDLKQQGFFIERQEVKQMV 146 (174)
Q Consensus 114 ~~~----~~~~~~~~F~~~D~~~~G~~I~~~el~~~l 146 (174)
... .-..-+.-|+.-|.|++|. ++.+||..+|
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~-lt~EEF~aFL 189 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGS-LTLEEFTAFL 189 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCc-ccHHHHHhcc
Confidence 000 1124466899999999999 9999999874
No 61
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.22 E-value=2e-05 Score=50.62 Aligned_cols=67 Identities=18% Similarity=0.452 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc--c---C-CCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 42 SEIEALYELFKKISSAVIDDGLINKEEFQLALFK--T---N-KKESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 42 ~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--~---~-~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
..+..+...|..... +.+.++..||+..+.. + . ......++.+++..|.++||.|+|.||+..+..+
T Consensus 5 ~ai~~lI~~FhkYaG---~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFAG---EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHcC---CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 346677788888875 4678999999998733 1 1 1123458899999999999999999999888655
No 62
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.22 E-value=1.7e-05 Score=64.72 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCC--CchHH-HHHHHHHHcCCCCCcccHHHHHHHHHhhCCC
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK--KESLF-ADRVFDLFDTKHNGILGFEEFARALSVFHPN 114 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~--~~~~~-~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~ 114 (174)
.-++++++.++-.|...+.+ +..+|++++|......... ..++. ++.+-...|..+||-|+|+||+.+-..++
T Consensus 29 ra~~~eLr~if~~~as~e~~--ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC-- 104 (694)
T KOG0751|consen 29 RADPKELRSIFLKYASIEKN--GESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC-- 104 (694)
T ss_pred cCChHHHHHHHHHHhHHhhc--cccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc--
Confidence 44778899999999988887 7888999999986533211 23443 44444555677899999999998877775
Q ss_pred CChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 115 APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 115 ~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
.++.....+|..||+.++|. +|.+++.++....
T Consensus 105 -~pDal~~~aFqlFDr~~~~~-vs~~~~~~if~~t 137 (694)
T KOG0751|consen 105 -APDALFEVAFQLFDRLGNGE-VSFEDVADIFGQT 137 (694)
T ss_pred -CchHHHHHHHHHhcccCCCc-eehHHHHHHHhcc
Confidence 45888999999999999999 9999999998874
No 63
>PF14658 EF-hand_9: EF-hand domain
Probab=98.21 E-value=8.4e-06 Score=48.96 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=33.1
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCC-CccccHHHHHHHHH
Q 030614 87 VFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQ-GFFIERQEVKQMVV 147 (174)
Q Consensus 87 lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~-G~~I~~~el~~~l~ 147 (174)
.|..||.++.|.|....++..|.......+.+..++.+.+.+|+++. |. |++++|..+++
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~-v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGS-VNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCce-EeHHHHHHHHH
Confidence 45555555555555555555555554434445555555555555555 55 55555555554
No 64
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.21 E-value=1.7e-05 Score=64.79 Aligned_cols=106 Identities=24% Similarity=0.340 Sum_probs=78.8
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCC
Q 030614 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP 116 (174)
Q Consensus 37 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~ 116 (174)
.+++++-++-+...-+ .. ++|.|+++||. ++......++.....+|..||+.++|.++++++...+....-+..
T Consensus 69 ~~~n~~~v~Lla~iaD---~t--KDglisf~eF~-afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~ 142 (694)
T KOG0751|consen 69 SNFNDKIVRLLASIAD---QT--KDGLISFQEFR-AFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHH 142 (694)
T ss_pred ccCChHHHHHHHhhhh---hc--ccccccHHHHH-HHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccC
Confidence 3555555444444333 33 89999999999 444444456777889999999999999999999988875432111
Q ss_pred ----------------------------------hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 117 ----------------------------------IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 117 ----------------------------------~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
..+..+.+|+..|+.++|. ||.=++.+++-.+
T Consensus 143 ~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~-is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 143 IPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGF-ISVLDFQDIMVTI 208 (694)
T ss_pred CCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCe-eeeechHhhhhhh
Confidence 2345788999999999999 9999999988774
No 65
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.20 E-value=5.7e-06 Score=54.69 Aligned_cols=70 Identities=24% Similarity=0.422 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
.++++|.......|...++ ++|.|+-.+...++...++ +...+..||+..|.+++|+++++||+.++...
T Consensus 3 ~ls~~e~~~y~~~F~~l~~---~~g~isg~~a~~~f~~S~L-~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP---QDGKISGDQAREFFMKSGL-PRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS---STTEEEHHHHHHHHHHTTS-SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC---CCCeEeHHHHHHHHHHcCC-CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 5677888999999998875 6899999999988765543 44668899999999999999999999887644
No 66
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.19 E-value=1.1e-05 Score=51.70 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=53.7
Q ss_pred HHHHHHHHcCC--CCCcccHHHHHHHHHhhCCCCCh----HHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 84 ADRVFDLFDTK--HNGILGFEEFARALSVFHPNAPI----DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 84 ~~~lf~~~d~~--~~g~I~~~ef~~~l~~~~~~~~~----~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
+-.+|..++.. .+|.|+..|+..++....+...+ ++.+..+|+.+|.|++|. |+++||..++..+.
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~-I~f~eF~~~~~~~~ 81 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQ-LSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCc-CcHHHHHHHHHHHH
Confidence 45688888865 47899999999999743321233 788999999999999999 99999999988764
No 67
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.17 E-value=3.4e-06 Score=43.20 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCCCccccHHHHHHHHH
Q 030614 120 KIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (174)
Q Consensus 120 ~~~~~F~~~D~~~~G~~I~~~el~~~l~ 147 (174)
+++.+|+.||.|++|+ |+.+||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~-I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGF-IDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSE-EEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCc-CcHHHHHHHHH
Confidence 3678999999999999 99999999987
No 68
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.08 E-value=5.1e-06 Score=40.36 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCCCccccHHHHHHHH
Q 030614 121 IEFSFQLYDLKQQGFFIERQEVKQMV 146 (174)
Q Consensus 121 ~~~~F~~~D~~~~G~~I~~~el~~~l 146 (174)
++.+|+.+|.|+||. |+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~-is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGK-ISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSE-EEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCc-CCHHHHHHHC
Confidence 356788888888888 8888887753
No 69
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.06 E-value=2.3e-05 Score=54.14 Aligned_cols=88 Identities=15% Similarity=0.262 Sum_probs=69.3
Q ss_pred CCCcccHHHHHHHHhcc-CCCchH-HHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHH----HHHHHHHhcCCCC
Q 030614 60 DDGLINKEEFQLALFKT-NKKESL-FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDK----IEFSFQLYDLKQQ 133 (174)
Q Consensus 60 ~~g~i~~~ef~~~l~~~-~~~~~~-~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~----~~~~F~~~D~~~~ 133 (174)
|.|.+++.+|..++.-. ...|.. -+.-.|+.+|.++++.|.-+++...+..+.++...+++ +..+..-.|.|||
T Consensus 84 G~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgD 163 (189)
T KOG0038|consen 84 GRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGD 163 (189)
T ss_pred CCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCC
Confidence 89999999999987432 112222 25668999999999999999999999988775555544 4556778899999
Q ss_pred CccccHHHHHHHHHH
Q 030614 134 GFFIERQEVKQMVVA 148 (174)
Q Consensus 134 G~~I~~~el~~~l~~ 148 (174)
|. |+..||.+++..
T Consensus 164 gk-l~~~eFe~~i~r 177 (189)
T KOG0038|consen 164 GK-LSFAEFEHVILR 177 (189)
T ss_pred Cc-ccHHHHHHHHHh
Confidence 99 999999998764
No 70
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.05 E-value=4.6e-05 Score=52.27 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=92.4
Q ss_pred hhhHhhhhhhhccCCCCCCCCCchHHHHHhcCC--CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCc----
Q 030614 7 GFKHLFASLLQCCDTNPSRGLEDPEILARETVF--SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE---- 80 (174)
Q Consensus 7 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~---- 80 (174)
.++.+|......++++++. .......+.... |..++.+....+.+.-- +-.++++++|.-++.......
T Consensus 12 e~ke~F~lfD~~gD~ki~~--~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~---~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 12 EFKEAFLLFDRTGDGKISG--SQVGDVLRALGQNPTNAEVLKVLGQPKRREM---NVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred HHHHHHHHHhccCcccccH--HHHHHHHHHhcCCCcHHHHHHHHcCcccchh---hhhhhhHHHHHHHHHHHHhccccCc
Confidence 4556666666667778865 667777776544 55555555544432211 236799999998886543221
Q ss_pred hHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHH
Q 030614 81 SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMV 146 (174)
Q Consensus 81 ~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l 146 (174)
-...-+-++.||++++|.|...|+.+.|..+.. ..+++++..+..-. .|.+|. |.+++|.+.+
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe-kl~eeEVe~Llag~-eD~nG~-i~YE~fVk~i 149 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE-KLTEEEVEELLAGQ-EDSNGC-INYEAFVKHI 149 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh-hccHHHHHHHHccc-cccCCc-CcHHHHHHHH
Confidence 112446788999999999999999999999987 66777777766655 477888 9999998765
No 71
>PLN02964 phosphatidylserine decarboxylase
Probab=98.00 E-value=9.3e-05 Score=63.28 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=71.3
Q ss_pred hhhhHhhhhhhhccCCCCCCCCCchHHHHHhcC---CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCC-Cch
Q 030614 6 EGFKHLFASLLQCCDTNPSRGLEDPEILARETV---FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-KES 81 (174)
Q Consensus 6 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~-~~~ 81 (174)
..++..|..+....++.+ +..+.+... .+..+...+.+.|..+|.+ ++|.|++.||..++...+. .+.
T Consensus 143 ~elkeaF~lfD~dgdG~i------Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D--gdG~IdfdEFl~lL~~lg~~~se 214 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV------VGSIFVSCSIEDPVETERSFARRILAIVDYD--EDGQLSFSEFSDLIKAFGNLVAA 214 (644)
T ss_pred HHHHHHHHHHCCCCCCcC------HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC--CCCeEcHHHHHHHHHHhccCCCH
Confidence 445556665544444332 666666555 3445544577888888888 9999999999998865432 244
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 82 LFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 82 ~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
..+..+|+.+|.+++|.|+++||..++...
T Consensus 215 EEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 215 NKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 468999999999999999999999998773
No 72
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.98 E-value=1.9e-05 Score=61.35 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=90.2
Q ss_pred CchHHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHH
Q 030614 28 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARA 107 (174)
Q Consensus 28 ~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~ 107 (174)
.+...+.+.-++...-+.+-...+....+.+ +++.|...||..-+ .......++.+|..||.+++|.++|.|....
T Consensus 209 ~eF~~~~r~lkL~~~gl~k~ld~y~~var~~-kg~~igi~efa~~l---~vpvsd~l~~~f~LFde~~tg~~D~re~v~~ 284 (412)
T KOG4666|consen 209 PEFVAKRRVLKLPLVGLIKKLDGYVYVAREA-KGPDIGIVEFAVNL---RVPVSDKLAPTFMLFDEGTTGNGDYRETVKT 284 (412)
T ss_pred HHHHHHHhccCCChHHHHHHHhhHHHHHHhc-cCCCcceeEeeeee---ecchhhhhhhhhheecCCCCCcccHHHHhhh
Confidence 4445555556677666555554444443321 56678878887544 2233455788999999999999999999999
Q ss_pred HHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 108 LSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 108 l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
++.+++...+..-++.+|++|+.+.||. +..++|--+++..+
T Consensus 285 lavlc~p~~t~~iiq~afk~f~v~eDg~-~ge~~ls~ilq~~l 326 (412)
T KOG4666|consen 285 LAVLCGPPVTPVIIQYAFKRFSVAEDGI-SGEHILSLILQVVL 326 (412)
T ss_pred heeeeCCCCcHHHHHHHHHhcccccccc-cchHHHHHHHHHhc
Confidence 9999987788899999999999999999 99999999998764
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.97 E-value=3e-05 Score=62.72 Aligned_cols=55 Identities=27% Similarity=0.443 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 81 SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 81 ~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
...+..+|+.+|.+++|.|+..||.. +..+|..+|.|++|. |+++||.+.+...+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~-Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGK-ITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCC-CcHHHHHHHHHHHH
Confidence 33478899999999999999999952 467899999999999 99999999988754
No 74
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.96 E-value=1.9e-05 Score=63.53 Aligned_cols=102 Identities=14% Similarity=0.338 Sum_probs=69.3
Q ss_pred HHHHHHHHhhcc-CCCCCC--cccHHHHHHHHhccCCCchHHHHHHHHHH-------------------cCCCCCcccHH
Q 030614 45 EALYELFKKISS-AVIDDG--LINKEEFQLALFKTNKKESLFADRVFDLF-------------------DTKHNGILGFE 102 (174)
Q Consensus 45 ~~l~~~F~~~d~-~~~~~g--~i~~~ef~~~l~~~~~~~~~~~~~lf~~~-------------------d~~~~g~I~~~ 102 (174)
+.++..|...-- +.++.| +|++++|...+......+.....+-++.+ +.+.+|-|+|.
T Consensus 140 ~kiFryFAtvk~~~~~~~~evyMTP~DFlrSi~p~~~qpe~~gld~~k~~~~~~~~~~~~~~~~~siF~~lg~~GLIsfS 219 (489)
T KOG2643|consen 140 DKIFRYFATVKYKNDSGKGEVYMTPEDFLRSITPGAKQPERLGLDKLKDIDEKLKKELPKFSDGDSIFYKLGESGLISFS 219 (489)
T ss_pred HHHHHHhheeeeeccCCCceEEeCHHHHHHhcCCCCCCchhhhhHHHhhhchhccccCccCCCCCeeEEEcCCCCeeeHH
Confidence 345666665431 111344 59999999887543333323322222333 33457899999
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 103 EFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 103 ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
|++-.+..+ ..++...+.+|++||.|++|. |+.+||..+.+-+.
T Consensus 220 dYiFLlTlL---S~p~~~F~IAFKMFD~dgnG~-IdkeEF~~v~~li~ 263 (489)
T KOG2643|consen 220 DYIFLLTLL---SIPERNFRIAFKMFDLDGNGE-IDKEEFETVQQLIR 263 (489)
T ss_pred HHHHHHHHH---ccCcccceeeeeeeecCCCCc-ccHHHHHHHHHHHH
Confidence 999888777 456677899999999999999 99999998876544
No 75
>PF14658 EF-hand_9: EF-hand domain
Probab=97.91 E-value=5e-05 Score=45.63 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=50.8
Q ss_pred HHHhhccCCCCCCcccHHHHHHHHhccCC-C-chHHHHHHHHHHcCCCC-CcccHHHHHHHHHhh
Q 030614 50 LFKKISSAVIDDGLINKEEFQLALFKTNK-K-ESLFADRVFDLFDTKHN-GILGFEEFARALSVF 111 (174)
Q Consensus 50 ~F~~~d~~~~~~g~i~~~ef~~~l~~~~~-~-~~~~~~~lf~~~d~~~~-g~I~~~ef~~~l~~~ 111 (174)
.|+.+|.+ +.|.+...++...|+.... . ....++.+.+.+|.++. |.|+|+.|+..|+..
T Consensus 3 ~F~~fD~~--~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 3 AFDAFDTQ--KTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred chhhcCCc--CCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 47777888 9999999999999987654 3 45569999999999987 999999999998753
No 76
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.84 E-value=4.8e-05 Score=61.42 Aligned_cols=64 Identities=23% Similarity=0.389 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCC---CChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPN---APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~---~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
+..+|+.+|.|++|.|+.+||..+|..+..+ ...++.+..+-+.+|.|+||. |+.+||......
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~-IDlNEfLeAFrl 615 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGK-IDLNEFLEAFRL 615 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCc-ccHHHHHHHHhh
Confidence 7789999999999999999999999877652 235567888889999999999 999999988765
No 77
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.00012 Score=59.10 Aligned_cols=101 Identities=18% Similarity=0.331 Sum_probs=70.5
Q ss_pred HHHHHHhhccCCCCCCcccHHHHHHHHhccCC----CchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCC------
Q 030614 47 LYELFKKISSAVIDDGLINKEEFQLALFKTNK----KESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP------ 116 (174)
Q Consensus 47 l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~----~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~------ 116 (174)
+.-.|.++++. .+|.|+..+|...+..... .....+++.-+.++.++. .|+++||..+...+..-..
T Consensus 320 l~lEF~~~~~~--~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~-gISl~Ef~~Ff~Fl~~l~dfd~Al~ 396 (489)
T KOG2643|consen 320 LELEFERFDKG--DSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGK-GISLQEFKAFFRFLNNLNDFDIALR 396 (489)
T ss_pred HHHHHHHhCcc--cccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCC-CcCHHHHHHHHHHHhhhhHHHHHHH
Confidence 34457778876 6799999999987643221 123356777777776643 4999998876654432010
Q ss_pred --------------------------hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHH
Q 030614 117 --------------------------IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLA 151 (174)
Q Consensus 117 --------------------------~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~ 151 (174)
.+..+..+|.+||.|+||. |+.+||..+++.-++
T Consensus 397 fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~-LS~~EFl~Vmk~Rmh 456 (489)
T KOG2643|consen 397 FYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGT-LSHKEFLAVMKRRMH 456 (489)
T ss_pred HHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCc-ccHHHHHHHHHHHhh
Confidence 1123466799999999999 999999999998654
No 78
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.71 E-value=0.00021 Score=40.60 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 99 I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
++|.|....+..+.- ...++.+..+|+..|+.++|. +..+||..+++.
T Consensus 2 msf~Evk~lLk~~NI-~~~~~yA~~LFq~~D~s~~g~-Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNI-EMDDEYARQLFQECDKSQSGR-LEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSE-BEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcc-CcCHHHHHHHHHHhcccCCCC-ccHHHHHHHHHH
Confidence 456666666655533 344556666677777777777 777776666654
No 79
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.69 E-value=0.00048 Score=50.21 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 83 ~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
.+..+|..+|.+.||+|++.|+..+|..+.. ..+.--++.+.+..|.|.+|. ||+.||.-+.....
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-pQTHL~lK~mikeVded~dgk-lSfreflLIfrkaa 165 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGA-PQTHLGLKNMIKEVDEDFDGK-LSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCC-chhhHHHHHHHHHhhcccccc-hhHHHHHHHHHHHh
Confidence 3678999999999999999999999988865 455667889999999999999 99999999988764
No 80
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.67 E-value=0.00012 Score=61.53 Aligned_cols=112 Identities=23% Similarity=0.388 Sum_probs=81.8
Q ss_pred CchHHHHHhcCCCHHHHHHHHHHHHhhcc-CCCCCC--cccH---------HHHHHHHhcc--CCCchHHHHHHHHHHcC
Q 030614 28 EDPEILARETVFSVSEIEALYELFKKISS-AVIDDG--LINK---------EEFQLALFKT--NKKESLFADRVFDLFDT 93 (174)
Q Consensus 28 ~~~~~~~~~~~~~~~~i~~l~~~F~~~d~-~~~~~g--~i~~---------~ef~~~l~~~--~~~~~~~~~~lf~~~d~ 93 (174)
..++.+.+.+.||.+++..+|+.|+..-. +..+-| ..++ ..|...+..+ .......+.++|+.+|.
T Consensus 487 t~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~ 566 (671)
T KOG4347|consen 487 TILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDD 566 (671)
T ss_pred HHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhccc
Confidence 45777788889999999999999985321 100111 1222 2222222111 11123358899999999
Q ss_pred CCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHH
Q 030614 94 KHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEV 142 (174)
Q Consensus 94 ~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el 142 (174)
+++|.++|.++++++..+.. +...+++..+|+++|.+++ . ...+|.
T Consensus 567 s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~-~d~e~~ 612 (671)
T KOG4347|consen 567 SMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-E-LDREEV 612 (671)
T ss_pred CCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-c-cccccc
Confidence 99999999999999999987 7778899999999999999 8 888877
No 81
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.58 E-value=0.00012 Score=35.42 Aligned_cols=23 Identities=43% Similarity=0.787 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCCCcccHHHHHHH
Q 030614 85 DRVFDLFDTKHNGILGFEEFARA 107 (174)
Q Consensus 85 ~~lf~~~d~~~~g~I~~~ef~~~ 107 (174)
+.+|+.+|.|++|.|+++||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 56788888888888888888764
No 82
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.53 E-value=0.00091 Score=42.96 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhh----CCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVF----HPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~----~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
+-.+|..+..+ .+.++-.||...+..- .........+..+|+..|.|+||. |+++||..++..+.
T Consensus 10 lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~-vdF~EF~~Lv~~l~ 78 (91)
T cd05024 10 MMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGK-VGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCc-CcHHHHHHHHHHHH
Confidence 44578888754 5689999999988543 333455678999999999999999 99999999998764
No 83
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.45 E-value=0.00061 Score=56.23 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=61.7
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC----chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhC
Q 030614 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK----ESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (174)
Q Consensus 37 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~----~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~ 112 (174)
+.||++|++.+...|.+.| + ++|+++..++..++...... ...+++.+....+.+.+|.|+|++|+..+-.+.
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~--~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-D--QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-C--CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 4789999999999999999 6 89999999999988553322 356789999999999999999999998665554
No 84
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.45 E-value=0.00025 Score=36.06 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALS 109 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~ 109 (174)
++.+|+.+|.+++|.|+++||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45677788888888888888777775
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.38 E-value=0.00094 Score=37.94 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=38.0
Q ss_pred cccHHHHHHHHhccCCC-chHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 63 LINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 63 ~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
+|++.|....|...... .+..+..+|+..|.+++|.++.+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47889999988777665 34468899999999999999999999887654
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.35 E-value=0.00062 Score=55.23 Aligned_cols=54 Identities=33% Similarity=0.501 Sum_probs=45.2
Q ss_pred HHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhC
Q 030614 45 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (174)
Q Consensus 45 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~ 112 (174)
..+...|..+|.+ ++|.|+.+||.. +..+|..+|.|++|.|+++||..+++...
T Consensus 334 ~~l~~aF~~~D~d--gdG~Is~~E~~~------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 334 HAAQEIFRLYDLD--GDGFITREEWLG------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred HHHHHHHHHhCCC--CCCcCcHHHHHH------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4456677788888 999999999952 46799999999999999999999886543
No 87
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.35 E-value=0.00015 Score=48.67 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHH
Q 030614 82 LFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVK 143 (174)
Q Consensus 82 ~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~ 143 (174)
..+.-.|...|.++||.++-.|+..+...+ ...+.-++..|+..|.|+||. ||..|+.
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~-Is~~EW~ 111 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGK-ISLDEWC 111 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSS-EEHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCC-CCHHHHc
Confidence 345566777777777777777766554433 233445566677777777777 7777654
No 88
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.14 E-value=0.0026 Score=42.00 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 83 ~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
....+|+..+. ++|.|+-.+...++..- +.+.+.+..+|.+.|.|++|+ ++.+||.-.+.-+.
T Consensus 11 ~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~-L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 11 KYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGK-LDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSE-EEHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCc-CCHHHHHHHHHHHH
Confidence 46788888875 57999999988766533 677899999999999999999 99999999887653
No 89
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.12 E-value=0.0013 Score=49.55 Aligned_cols=138 Identities=16% Similarity=0.213 Sum_probs=81.5
Q ss_pred hhhhhHhhhhhhhccCCCCCCCCCchHHHHHh-c-CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcc-CCCc-
Q 030614 5 IEGFKHLFASLLQCCDTNPSRGLEDPEILARE-T-VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT-NKKE- 80 (174)
Q Consensus 5 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~-~~~~- 80 (174)
.+-|..+|..+.=+.+.+++. -++++.... + .-=++...+-...|...|++ ++|.++..||.--+... +...
T Consensus 100 rrklmviFsKvDVNtDrkisA--kEmqrwImektaEHfqeameeSkthFraVDpd--gDGhvsWdEykvkFlaskghsek 175 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISA--KEMQRWIMEKTAEHFQEAMEESKTHFRAVDPD--GDGHVSWDEYKVKFLASKGHSEK 175 (362)
T ss_pred HHHHHHHHhhcccCccccccH--HHHHHHHHHHHHHHHHHHHhhhhhheeeeCCC--CCCceehhhhhhHHHhhcCcchH
Confidence 445556666666666666654 344433222 1 11111223334568888999 99999999887644110 1000
Q ss_pred --------------h------------------------------------H---------HHHHHHHHHcCCCCCcccH
Q 030614 81 --------------S------------------------------------L---------FADRVFDLFDTKHNGILGF 101 (174)
Q Consensus 81 --------------~------------------------------------~---------~~~~lf~~~d~~~~g~I~~ 101 (174)
+ | +++.+.+.+|.+++..++-
T Consensus 176 evadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSv 255 (362)
T KOG4251|consen 176 EVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSV 255 (362)
T ss_pred HHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecc
Confidence 0 0 1456777888888888888
Q ss_pred HHHHHHHHhhCCC---CC-----hHHHHHHHHHHhcCCCCCccccHHHHHHHHH
Q 030614 102 EEFARALSVFHPN---AP-----IDDKIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (174)
Q Consensus 102 ~ef~~~l~~~~~~---~~-----~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~ 147 (174)
.+|+..-.....+ .. .....+..=..+|.|+||. +|.+|+..++.
T Consensus 256 peFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGi-vTaeELe~y~d 308 (362)
T KOG4251|consen 256 PEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGI-VTAEELEDYVD 308 (362)
T ss_pred hhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccc-eeHHHHHhhcC
Confidence 8888754332211 11 1234455667889999999 99999987754
No 90
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.95 E-value=0.0013 Score=31.66 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 121 IEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 121 ~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
++.+|+.+|.+++|. |+.+||..+++.
T Consensus 2 ~~~~f~~~d~~~~g~-i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGK-IDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCc-EeHHHHHHHHHh
Confidence 456777888888888 888887777654
No 91
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.92 E-value=0.017 Score=49.98 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC-chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCCh
Q 030614 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPI 117 (174)
Q Consensus 39 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~ 117 (174)
........+...|+..|.+ .+|.++..+...++...... ....+..+|+..+..+++++...++..+...... .+
T Consensus 130 ~~~~~~~wi~~~~~~ad~~--~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~--rp 205 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKN--KNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK--RP 205 (746)
T ss_pred hcchHHHHHHHHHHHHccc--cccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc--Cc
Confidence 3444557778899999998 99999999999887654322 3334778888888888999999999988776653 33
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 030614 118 DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESG-MNLSDDVIETIIDKV 169 (174)
Q Consensus 118 ~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~-~~l~~~~i~~i~~~i 169 (174)
.+..+|..+-.+ .++ ++.+++..++... .| ...+.+.+++||+++
T Consensus 206 --ev~~~f~~~s~~-~~~-ls~~~L~~Fl~~~---q~e~~~~~~~ae~ii~~~ 251 (746)
T KOG0169|consen 206 --EVYFLFVQYSHG-KEY-LSTDDLLRFLEEE---QGEDGATLDEAEEIIERY 251 (746)
T ss_pred --hHHHHHHHHhCC-CCc-cCHHHHHHHHHHh---cccccccHHHHHHHHHHh
Confidence 788888888655 889 9999999999986 33 457888999999765
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.91 E-value=0.0043 Score=41.63 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHH
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFAR 106 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~ 106 (174)
.........+.=.|..+|.| ++|.++..|+..+...+ ..+.+=+...++..|.++||.|++.||..
T Consensus 47 ~~~~~~~~~~~W~F~~LD~n--~d~~L~~~El~~l~~~l-~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 47 SSYSECKRVVHWKFCQLDRN--KDGVLDRSELKPLRRPL-MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HTGGGGHHHHHHHHHHH--T---SSEE-TTTTGGGGSTT-STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred cchhhhhhhhhhhHhhhcCC--CCCccCHHHHHHHHHHH-hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34445556666779999999 99999999999654322 33343467899999999999999999975
No 93
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.89 E-value=0.0051 Score=56.66 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCC------CCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCC
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHP------NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNL 157 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~------~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l 157 (174)
..-+|+.||.+.+|.+++++|..+|..... ++.++..++.+..+.|++++|+ |+.+|...++-.= .+..-+
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~-Vsl~dY~afmi~~--ETeNI~ 2331 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGY-VSLQDYMAFMISK--ETENIL 2331 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCc-ccHHHHHHHHHhc--cccccc
Confidence 456999999999999999999999998764 2345568999999999999999 9999988776431 122224
Q ss_pred CHHHHHHHHHH
Q 030614 158 SDDVIETIIDK 168 (174)
Q Consensus 158 ~~~~i~~i~~~ 168 (174)
+.++|+.-++.
T Consensus 2332 s~~eIE~Afra 2342 (2399)
T KOG0040|consen 2332 SSEEIEDAFRA 2342 (2399)
T ss_pred chHHHHHHHHH
Confidence 55566665544
No 94
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.84 E-value=0.0042 Score=46.87 Aligned_cols=120 Identities=14% Similarity=0.214 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccC----CCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCC--
Q 030614 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTN----KKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP-- 116 (174)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~----~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~-- 116 (174)
-.+.+...|.+.|.| .+|+|+..|+...+.... .......+.-|+..|.+++|.|+++||..-+........
T Consensus 99 srrklmviFsKvDVN--tDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghseke 176 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVN--TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKE 176 (362)
T ss_pred HHHHHHHHHhhcccC--ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHH
Confidence 356788899999999 999999999998663210 011223566899999999999999999654433221010
Q ss_pred ----------------------------------------hH-----------------HHHHHHHHHhcCCCCCccccH
Q 030614 117 ----------------------------------------ID-----------------DKIEFSFQLYDLKQQGFFIER 139 (174)
Q Consensus 117 ----------------------------------------~~-----------------~~~~~~F~~~D~~~~G~~I~~ 139 (174)
++ .-++.+.+.+|+|+|.. ++.
T Consensus 177 vadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkq-lSv 255 (362)
T KOG4251|consen 177 VADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQ-LSV 255 (362)
T ss_pred HHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCee-ecc
Confidence 00 02356788899999999 999
Q ss_pred HHHHHHHHHHHH-hcCCCCCHHHHHHH
Q 030614 140 QEVKQMVVATLA-ESGMNLSDDVIETI 165 (174)
Q Consensus 140 ~el~~~l~~l~~-~~~~~l~~~~i~~i 165 (174)
.||....-.... ..|..+++-+++.-
T Consensus 256 peFislpvGTVenqqgqdiddnwvkdR 282 (362)
T KOG4251|consen 256 PEFISLPVGTVENQQGQDIDDNWVKDR 282 (362)
T ss_pred hhhhcCCCcchhhhhccchHHHHHHHH
Confidence 999874332111 13555665555443
No 95
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.66 E-value=0.0065 Score=49.63 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=66.7
Q ss_pred CCCcccHHHHHHHHhccCCC-chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCC--------CCChHHHHHHHHHHhcC
Q 030614 60 DDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHP--------NAPIDDKIEFSFQLYDL 130 (174)
Q Consensus 60 ~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~--------~~~~~~~~~~~F~~~D~ 130 (174)
.+|+|++++|...+.+...+ ..+-++-+|+.+|.+++|.++..|.-.++...+. ....+..+-.++.+.-+
T Consensus 328 ~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP 407 (493)
T KOG2562|consen 328 VEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKP 407 (493)
T ss_pred ecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCc
Confidence 78999999999988765444 3334788999999999999999998766654432 23466677888999988
Q ss_pred CCCCccccHHHHHH
Q 030614 131 KQQGFFIERQEVKQ 144 (174)
Q Consensus 131 ~~~G~~I~~~el~~ 144 (174)
...|+ ||.+||+.
T Consensus 408 ~~~~k-ItLqDlk~ 420 (493)
T KOG2562|consen 408 EDENK-ITLQDLKG 420 (493)
T ss_pred cCCCc-eeHHHHhh
Confidence 88999 99999986
No 96
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.59 E-value=0.004 Score=48.72 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=75.4
Q ss_pred HHHHHHHHhhccCCCCCCcccHHHHHHHHhcc-CCC-chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHH
Q 030614 45 EALYELFKKISSAVIDDGLINKEEFQLALFKT-NKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIE 122 (174)
Q Consensus 45 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~-~~~-~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~ 122 (174)
..+...|..+|.+ ++|.+++.+.-..+.-. +.. ....++-.|+.|+.+.||.++-.+|...+.... +..+-.+-
T Consensus 259 d~l~~~f~LFde~--~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEG--TTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLRVP 334 (412)
T ss_pred hhhhhhhheecCC--CCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc--Ccceeecc
Confidence 4556666677777 89999998887665221 112 233588999999999999999999888876665 34444567
Q ss_pred HHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 123 FSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 123 ~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
-.|+.++...+|+ |++++|+++...
T Consensus 335 ~lf~~i~q~d~~k-i~~~~f~~fa~~ 359 (412)
T KOG4666|consen 335 VLFPSIEQKDDPK-IYASNFRKFAAT 359 (412)
T ss_pred ccchhhhcccCcc-eeHHHHHHHHHh
Confidence 7999999999999 999999998653
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.44 E-value=0.0062 Score=29.04 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALS 109 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~ 109 (174)
++.+|..+|.+++|.|++.+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45678888888888888888877764
No 98
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.032 Score=37.28 Aligned_cols=32 Identities=9% Similarity=0.201 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHH
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL 73 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l 73 (174)
++|+++++- -.|+..|-+ ++|+++--|+..++
T Consensus 62 ~mtpeqlqf--HYF~MHDld--knn~lDGiEl~kAi 93 (144)
T KOG4065|consen 62 KMTPEQLQF--HYFSMHDLD--KNNFLDGIELLKAI 93 (144)
T ss_pred hCCHHHHhh--hhhhhhccC--cCCcchHHHHHHHH
Confidence 445544332 234445555 55555555555554
No 99
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.13 E-value=0.042 Score=48.64 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=85.2
Q ss_pred CchHHHHHh-cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchH---HHHHHHHHH---cCCCCCccc
Q 030614 28 EDPEILARE-TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL---FADRVFDLF---DTKHNGILG 100 (174)
Q Consensus 28 ~~~~~~~~~-~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~---~~~~lf~~~---d~~~~g~I~ 100 (174)
.+-+.+.+. ...++..+.++.+.|..++.. ..|.+++++|..++...+..... ....+|+.+ |....|.++
T Consensus 729 ~en~il~R~sk~~sQ~v~~ElrAle~~~~~~--d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~ 806 (890)
T KOG0035|consen 729 SENEILERDSKGTSQYVLDELRALENEQDKI--DGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQ 806 (890)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHhHHHHh--hcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCccccccee
Confidence 334444444 366777888888888888887 78889999999999766554322 245555555 444458899
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHH
Q 030614 101 FEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQM 145 (174)
Q Consensus 101 ~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~ 145 (174)
|.+|...+..-......+.++..+|+.+-++.. + |..+|+..-
T Consensus 807 ~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~-lL~eEL~~~ 849 (890)
T KOG0035|consen 807 LLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-Y-LLLEELVRE 849 (890)
T ss_pred HHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-H-HHHHHHHhh
Confidence 999999998877666778889999999977666 8 999998873
No 100
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.11 E-value=0.019 Score=35.99 Aligned_cols=63 Identities=14% Similarity=0.282 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCC-CChHHHHHHHHHHhcCC----CCCccccHHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPN-APIDDKIEFSFQLYDLK----QQGFFIERQEVKQMVVA 148 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~-~~~~~~~~~~F~~~D~~----~~G~~I~~~el~~~l~~ 148 (174)
+..+|..+.. +.+.+|.++|..+|...++. ..+.+.+..+++.|.++ ..+. ++.++|..+|.+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~-lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQ-LTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTE-EEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCC-cCHHHHHHHHCC
Confidence 4678888855 57788888888888877763 24567788888888655 3678 999999888754
No 101
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.037 Score=45.81 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=59.7
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 37 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
..+++++.++.-+.|....++ .+|+|+-+--++.+... ..+-.++..||.+.|.+.||.+++.||+.++-.+
T Consensus 223 w~IT~EQReYYvnQFrtvQpD--p~gfisGsaAknFFtKS-klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPD--PHGFISGSAAKNFFTKS-KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred cccCHHHHHHHHhhhhcccCC--cccccccHHHHhhhhhc-cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 478999999999999999999 99999888777665332 2345568899999999999999999999988654
No 102
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.02 E-value=0.13 Score=40.83 Aligned_cols=104 Identities=15% Similarity=0.068 Sum_probs=72.6
Q ss_pred cCCCHHHHHHH----HHHHHhhccCCCCCCcccHHHHHHHHhccCC----CchHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 030614 37 TVFSVSEIEAL----YELFKKISSAVIDDGLINKEEFQLALFKTNK----KESLFADRVFDLFDTKHNGILGFEEFARAL 108 (174)
Q Consensus 37 ~~~~~~~i~~l----~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~----~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l 108 (174)
++-+..++..+ .++|+.+-.+ .++......+...-.+... .....+-.+|+.+|.+.++.++..|+..+.
T Consensus 199 ~~Ct~qeL~~lg~RL~dWF~~lhe~--s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 199 YACTDQELRRLGNRLRDWFKALHED--SSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhh--hhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 45788887765 5777765544 4444444444443221111 122346789999999999999999987654
Q ss_pred HhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 109 SVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 109 ~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
. ..-+.-++-.|...|...||. |+-+|+..-...
T Consensus 277 l-----dknE~CikpFfnsCD~~kDg~-iS~~EWC~CF~k 310 (434)
T KOG3555|consen 277 L-----DKNEACIKPFFNSCDTYKDGS-ISTNEWCYCFQK 310 (434)
T ss_pred c-----cCchhHHHHHHhhhcccccCc-cccchhhhhhcc
Confidence 2 455677899999999999999 999999865543
No 103
>PLN02952 phosphoinositide phospholipase C
Probab=93.92 E-value=0.52 Score=40.58 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=20.6
Q ss_pred CcccHHHHHHHHHhhCC-CCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 97 GILGFEEFARALSVFHP-NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 97 g~I~~~ef~~~l~~~~~-~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
|.++|++|..+...+-. ...+...+..+|..+-. +.+. ++.++|..+|..
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~-mt~~~l~~FL~~ 65 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGH-MGADQLRRFLVL 65 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCc-cCHHHHHHHHHH
Confidence 44455554443333321 11123344444544432 2234 555555554444
No 104
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=0.23 Score=33.29 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=45.8
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhhCCC---------CCh----HHHHHHHHHHhcCCCCCccccHHHHHHH
Q 030614 86 RVFDLFDTKHNGILGFEEFARALSVFHPN---------API----DDKIEFSFQLYDLKQQGFFIERQEVKQM 145 (174)
Q Consensus 86 ~lf~~~d~~~~g~I~~~ef~~~l~~~~~~---------~~~----~~~~~~~F~~~D~~~~G~~I~~~el~~~ 145 (174)
..|...|.|+++.++=-|++.++..+... -.. +..+..+.+--|.|+||+ |.+.||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~-IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGV-IDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCce-eeHHHHHhh
Confidence 58889999999999999999998877530 012 234556677779999999 999999764
No 105
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.35 E-value=0.43 Score=34.31 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=54.9
Q ss_pred HHhhccCCCCCCcccHHHHHHHHhccCCCchH--HHHHHHHHHcC--CCCCcccHHHHHHHHHhhCC--C----------
Q 030614 51 FKKISSAVIDDGLINKEEFQLALFKTNKKESL--FADRVFDLFDT--KHNGILGFEEFARALSVFHP--N---------- 114 (174)
Q Consensus 51 F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~--~~~~lf~~~d~--~~~g~I~~~ef~~~l~~~~~--~---------- 114 (174)
..=+|+| ++|.|.+.|-...++..+...-- .+..+....-+ -..+.+.-.-|...+....+ +
T Consensus 13 vaFFDrd--~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~e 90 (174)
T PF05042_consen 13 VAFFDRD--KDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTE 90 (174)
T ss_pred hceeCCC--CCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccC
Confidence 3346788 99999999999888877654221 11111111100 01111111111111111111 0
Q ss_pred -CChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 115 -APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 115 -~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
.-..++.+.+|..+++.+.+. +|..|+..+++.
T Consensus 91 GrFvp~kFe~iF~kya~~~~d~-LT~~E~~~m~~~ 124 (174)
T PF05042_consen 91 GRFVPQKFEEIFSKYAKTGPDA-LTLRELWRMLKG 124 (174)
T ss_pred CcCCHHHHHHHHHHhCCCCCCC-cCHHHHHHHHHh
Confidence 113468999999999999999 999999999987
No 106
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.28 E-value=0.38 Score=30.01 Aligned_cols=45 Identities=22% Similarity=0.480 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH
Q 030614 120 KIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGM-NLSDDVIETIIDKV 169 (174)
Q Consensus 120 ~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~-~l~~~~i~~i~~~i 169 (174)
.++.+|+.|-. +.+. ||.++|...|..- .+. .++.++++.++.+.
T Consensus 1 ei~~if~~ys~-~~~~-mt~~~f~~FL~~e---Q~~~~~~~~~~~~li~~~ 46 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEY-MTAEEFRRFLREE---QGEPRLTDEQAKELIEKF 46 (83)
T ss_dssp HHHHHHHHHCT-TSSS-EEHHHHHHHHHHT---SS-TTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCc-CCHHHHHHHHHHH---hccccCcHHHHHHHHHHH
Confidence 36789999955 7889 9999999999874 454 57899999999874
No 107
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.17 E-value=0.65 Score=32.85 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=45.7
Q ss_pred HHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC----chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhC
Q 030614 45 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKK----ESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (174)
Q Consensus 45 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~----~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~ 112 (174)
+.++..|..+... +...|+...|..++...++. ....+..+|..+-..+...|+|++|..+|..+.
T Consensus 2 ~~~F~~f~~fG~~--~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKK--NGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTS--TSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--ccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4566667666543 55579999999998654432 233488899998776667899999999887653
No 108
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=92.97 E-value=1.4 Score=30.07 Aligned_cols=99 Identities=11% Similarity=0.270 Sum_probs=47.1
Q ss_pred hHHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHH-HHHH
Q 030614 30 PEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEF-ARAL 108 (174)
Q Consensus 30 ~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef-~~~l 108 (174)
++.+.+...+..-++..+.+.|..+.-+...+..++..++..++. .+|........+..+.... +.
T Consensus 26 LR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~-----------~iy~~l~~~~p~~~~i~~~~v~-- 92 (127)
T PF09068_consen 26 LRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLS-----------SIYEFLNKRLPTLHQIPSRPVD-- 92 (127)
T ss_dssp HHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHH-----------HHHHHHHHHSTTS--HH-------
T ss_pred HHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHH-----------HHHHHHHHHCCCCCCCCchhHH--
Confidence 455555566666666666666666544321234577777776652 2332222211121211100 00
Q ss_pred HhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 109 SVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 109 ~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
...+-.+.|++.+||++++|. |+.-.++-.+-.
T Consensus 93 ------~a~~L~ln~Ll~vyD~~rtG~-I~vls~KvaL~~ 125 (127)
T PF09068_consen 93 ------LAVDLLLNWLLNVYDSQRTGK-IRVLSFKVALIT 125 (127)
T ss_dssp ------HHHHHHHHHHHHHH-TT--SE-EEHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhCCCCCCe-eehhHHHHHHHH
Confidence 112234688888888888888 888888776643
No 109
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.66 E-value=0.67 Score=39.37 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=71.4
Q ss_pred hhHhhhhhhhccCCCCCCCCCchHHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccC-CCchHHHHH
Q 030614 8 FKHLFASLLQCCDTNPSRGLEDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADR 86 (174)
Q Consensus 8 ~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~ 86 (174)
-+.+++.-||-.....+.....+ .+++++++....+|..+|.+ +.|+.+..+....+.... ..+.....+
T Consensus 563 ar~fl~~~mg~~~~~~~~~~~~i-------~~~~~~~~~~~~rf~~lD~~--k~~~~~i~~v~~vlk~~~~~~d~~~~~~ 633 (680)
T KOG0042|consen 563 ARTFLNSEMGLSKESTSQMSIPI-------KLTPEDFLRRKTRFAFLDAD--KKAYQAIADVLKVLKSENVGWDEDRLHE 633 (680)
T ss_pred HHHhhhhhhhhhhhhcccccccc-------ccCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 34556666773333222212222 68999999999999999998 888888888888886654 345566788
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhhCC
Q 030614 87 VFDLFDTKHNGILGFEEFARALSVFHP 113 (174)
Q Consensus 87 lf~~~d~~~~g~I~~~ef~~~l~~~~~ 113 (174)
+.+..|..-+|.+...||...++....
T Consensus 634 ~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 634 ELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred HHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 888888888899999999988887765
No 110
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=92.58 E-value=1 Score=39.46 Aligned_cols=117 Identities=10% Similarity=0.170 Sum_probs=78.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc---------cCCC-----chHHHHHHHHHHcCCCC
Q 030614 31 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK---------TNKK-----ESLFADRVFDLFDTKHN 96 (174)
Q Consensus 31 ~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~---------~~~~-----~~~~~~~lf~~~d~~~~ 96 (174)
+.+.+...++.-.+.-+.++|+.+.... +...++.....++|.. .... .+--+..+++.||...+
T Consensus 406 r~LQK~l~ldlv~ltl~l~if~~h~l~~-~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~ 484 (966)
T KOG4286|consen 406 RRLQKALCLDLLSLSLALDALDQHNLKQ-NDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRT 484 (966)
T ss_pred HHHHHHHHhccccHHHHHHHHHHhcccc-cCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCC
Confidence 3344433444445555667777766531 3445777777776521 0111 11125678999999999
Q ss_pred CcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHH
Q 030614 97 GILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLA 151 (174)
Q Consensus 97 g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~ 151 (174)
|.|..-+|..++..+++ ...+++++.+|+.....+.-. + ...|...|..+++
T Consensus 485 g~irvls~ki~~i~lck-~~leek~~ylF~~vA~~~sq~-~-q~~l~lLL~dliq 536 (966)
T KOG4286|consen 485 GRIRVLSFKIGIISLCK-AHLEDKYRYLFKQVASSTSQC-D-QRRLGLLLHDLIQ 536 (966)
T ss_pred cceEEeeehhhHHHHhc-chhHHHHHHHHHHHcCchhhH-H-HHHHHHHHHHHHH
Confidence 99999999999999988 888999999999997666554 4 6666666665543
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=0.23 Score=43.43 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 030614 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSV 110 (174)
Q Consensus 39 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~ 110 (174)
.....-.+....|+.+|.. .+|+++-..=+.+|...++ +...+..|+.+-|.|+||+++-+||+-.+..
T Consensus 189 Vp~~~klKY~QlFNa~Dkt--rsG~Lsg~qaR~aL~qS~L-pq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKT--RSGYLSGQQARSALGQSGL-PQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred ccchhhhHHHHHhhhcccc--cccccccHHHHHHHHhcCC-chhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 3444455667888888887 8999988888888755443 3344778888889999999999999776643
No 112
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=92.17 E-value=0.71 Score=38.80 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCC--CCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHP--NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~--~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
+..-|...| +++|+|+..+....+..... .....+.++.+....+.|.+|. |+++||..+...+.
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~-v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGR-VEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCc-cCHHHHHHHHHhhh
Confidence 567888888 88999999999998877643 1235788999999999999999 99999999776653
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.05 E-value=0.76 Score=40.45 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSV 110 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~ 110 (174)
.+|.++..+-.+.|..+-+ +.|+|+-..-++++.+.+ .+.+.+..|+.+.|.|+||+++-.||..+|..
T Consensus 9 avT~~Er~K~~~qF~~Lkp---~~gfitg~qArnfflqS~-LP~~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 9 AVTDEERQKHDAQFGQLKP---GQGFITGDQARNFFLQSG-LPTPVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred ccchHHHHHHHHHHhccCC---CCCccchHhhhhhHHhcC-CChHHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 4678888888888988866 799999999998876554 46677889999999999999999999888764
No 114
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=91.87 E-value=0.54 Score=32.66 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=39.1
Q ss_pred CCcccHHHHHHHHhccCCCchHHHHHHHHHHcCC-------CCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCC
Q 030614 61 DGLINKEEFQLALFKTNKKESLFADRVFDLFDTK-------HNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQ 132 (174)
Q Consensus 61 ~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~-------~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~ 132 (174)
=+.+++.||...-.-... .+..++.++..|..+ ..+.|+|+.|..+|..+.....+++..+.+|..|-...
T Consensus 5 ~~~lsp~eF~qLq~y~ey-s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY-STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH-----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eeccCHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 345777777754211111 122355566666322 35689999999999999987788899999999996554
No 115
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.66 E-value=2 Score=36.77 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc-cCCCchH-H---HHHHHHHHcCC--CCCcccHHHHHHHHHh
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK-TNKKESL-F---ADRVFDLFDTK--HNGILGFEEFARALSV 110 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~~~~~-~---~~~lf~~~d~~--~~g~I~~~ef~~~l~~ 110 (174)
.+.+.-+..+.++|...|.+ .+|.++-.|+...=.. .+....+ . ++...+..-.+ .++.++...|+..-..
T Consensus 188 elkp~~v~al~RIFki~D~d--~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSD--NDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccHHHHHHHHHHHhhhccc--cccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 45677889999999999999 9999998888754322 1222222 1 22222222222 2456777777665444
Q ss_pred hCCCCC-----------------------------------------hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 111 FHPNAP-----------------------------------------IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 111 ~~~~~~-----------------------------------------~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
+...+. .-+.+..+|..||.|+||. ++.+|+......+
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~-L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGA-LSPEELKDLFSTA 344 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCC-cCHHHHHHHhhhC
Confidence 322110 1124677999999999999 9999999887763
No 116
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.11 E-value=4.3 Score=29.26 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCC------hHHHHHHHHHHhcCCCCCccccHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAP------IDDKIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~------~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~ 147 (174)
.+++|..++..+.+.+|+.|+..++..-..... ..-++..+|.+. .+.+|. +.+++++.+..
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~-l~Ke~iR~vYD 165 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGF-LSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCc-EeHHHHhhhcc
Confidence 678999999888889999999998876332111 123455567666 788999 99999988764
No 117
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.11 E-value=0.18 Score=39.77 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
+...|...|.+.++.|+-.||..+=..+.....+..-.+.+|+..|.|+|-+ ||..|+..-|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKk-ISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKK-ISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCce-ecHHHHhhhhcc
Confidence 5567888999999999888887766655554566677788999999999999 999999876654
No 118
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.91 E-value=0.15 Score=30.95 Aligned_cols=29 Identities=7% Similarity=0.329 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHhcCCCCCccccHHHHHHHH
Q 030614 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMV 146 (174)
Q Consensus 116 ~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l 146 (174)
.+.+++..+|+.+ .+++++ ||.+||.+.|
T Consensus 3 ~s~eqv~~aFr~l-A~~Kpy-VT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPY-VTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSC-EEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCc-ccHHHHHHHc
Confidence 4567899999999 788999 9999999874
No 119
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=90.73 E-value=1.9 Score=37.84 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 81 SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 81 ~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
..++..+|+.+|.+++|.+++.+-..++..+.. ...+.+++..|+..|.-++|. ++.+++......+
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k-~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGK-LEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccce-ehHHHHHHHHHhh
Confidence 346889999999999999999999998887765 566788999999999999999 9999998887654
No 120
>PLN02952 phosphoinositide phospholipase C
Probab=90.42 E-value=3.8 Score=35.46 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=59.6
Q ss_pred CCCcccHHHHHHHHhcc---CCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCC-ChHHHHHHHHHHh-------
Q 030614 60 DDGLINKEEFQLALFKT---NKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA-PIDDKIEFSFQLY------- 128 (174)
Q Consensus 60 ~~g~i~~~ef~~~l~~~---~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~-~~~~~~~~~F~~~------- 128 (174)
+.|.+++++|..+.... ...+.+.+..+|..+..++ +.++.++|..+|...+... .+.+.+..+|..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 46789999998665332 2235677999999997654 6899999999999988632 3344555554433
Q ss_pred cCCCCCccccHHHHHHHHH
Q 030614 129 DLKQQGFFIERQEVKQMVV 147 (174)
Q Consensus 129 D~~~~G~~I~~~el~~~l~ 147 (174)
...+.+. ++.+.|..+|.
T Consensus 92 ~~~~~~~-l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHG-LNLDDFFHFLL 109 (599)
T ss_pred ccccccC-cCHHHHHHHHc
Confidence 1223457 89999988874
No 121
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=88.97 E-value=1.2 Score=35.67 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 030614 44 IEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSV 110 (174)
Q Consensus 44 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~ 110 (174)
-..+-=.|.+.|.| .+|.++.+|+..+... ....=++..|+..|...+|.|+-.||+..+..
T Consensus 249 Kds~gWMFnklD~N--~Dl~Ld~sEl~~I~ld---knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTN--YDLLLDQSELRAIELD---KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccc--cccccCHHHhhhhhcc---CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 34455567888888 9999999999977521 22333678999999999999999999987643
No 122
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.18 E-value=1.3 Score=38.68 Aligned_cols=68 Identities=21% Similarity=0.500 Sum_probs=51.8
Q ss_pred CCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 96 NGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 96 ~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
++ ++++||. .. ....+.+++..|.++|. .+|. ++.+++..++..+..............++...++++
T Consensus 2 ~~-~~~~~~~-----~~-~~~~d~~l~~~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (646)
T KOG0039|consen 2 EG-ISFQELK-----IT-DCSYDDKLQTFFDMYDK-GDGK-LTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEE 69 (646)
T ss_pred CC-cchhhhc-----cc-CCChhHHHHHHHHHHhh-hcCC-ccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhh
Confidence 46 8999988 22 27889999999999998 9999 999999999998776544333455666666666654
No 123
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=87.79 E-value=0.31 Score=38.54 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCC--CchHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK--KESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
+.+-++=.|..+|.| .++.|+..|++..=.-+.. .+..=.+.+|+..|.++|.+|++.||+..+..-
T Consensus 331 eeRvv~w~F~qLdkN--~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 331 EERVVHWYFNQLDKN--SNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred hhheeeeeeeeeccc--ccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 334455568888988 8888999987754211111 233337789999999999999999999988644
No 124
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.63 E-value=3.1 Score=26.68 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHH
Q 030614 118 DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLA 151 (174)
Q Consensus 118 ~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~ 151 (174)
.++++++|+.+ .|.+|. ++..-|...|..+++
T Consensus 2 ~dKyRylFsli-sd~~g~-~~~~~l~~lL~d~lq 33 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGC-MDQRKLGLLLHDVLQ 33 (90)
T ss_dssp HHHHHHHHHHH-S-TTS--B-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCC-CcHHHHHHHHHHHHH
Confidence 46889999999 688999 999999999998875
No 125
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=85.18 E-value=4.6 Score=24.56 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=34.0
Q ss_pred CCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 96 NGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 96 ~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
+--+.|..++..+..... ......+...|+.=..+. |+.+||.+.++.+
T Consensus 6 sp~~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~k-IsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKK-ISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 345777877777776654 233444555555556788 9999999999887
No 126
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=83.65 E-value=2 Score=36.79 Aligned_cols=92 Identities=14% Similarity=0.197 Sum_probs=57.9
Q ss_pred hcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHH-HcCCCCCcccHHHHHHHHHhhCCC
Q 030614 36 ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDL-FDTKHNGILGFEEFARALSVFHPN 114 (174)
Q Consensus 36 ~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~-~d~~~~g~I~~~ef~~~l~~~~~~ 114 (174)
...+++.-++-+.+.|..+|.+ ++|.+++.|+...+......+ +....+.. --.+..|.+++..|+..|+...--
T Consensus 306 s~ELs~~~~~Fl~~~f~~~D~d--~Dg~L~p~El~~LF~~~P~~p--W~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tll 381 (625)
T KOG1707|consen 306 SVELSPKGYRFLVDVFEKFDRD--NDGALSPEELKDLFSTAPGSP--WTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLL 381 (625)
T ss_pred ceeccHHHHHHHHHHHHhccCC--CCCCcCHHHHHHHhhhCCCCC--CCCCcccccceecccceeehhhHHHHHHHHhhc
Confidence 3467888999999999999999 999999999997764321111 10000000 001256899999999998866432
Q ss_pred CChHHHHHHHHHHhcCC
Q 030614 115 APIDDKIEFSFQLYDLK 131 (174)
Q Consensus 115 ~~~~~~~~~~F~~~D~~ 131 (174)
.........+|--|..+
T Consensus 382 d~~~t~~~L~Ylgf~~~ 398 (625)
T KOG1707|consen 382 DPRRTLEYLAYLGFPTD 398 (625)
T ss_pred cHHHHHHHHHhcCCccc
Confidence 22222333455555554
No 127
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=83.28 E-value=5.2 Score=31.67 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=57.3
Q ss_pred HHHhhccCCCCCCcccHHHHHHHHhc----cC--CC-chH----------HHHHHHHHHcCCCCCcccHHHHHHHHHhhC
Q 030614 50 LFKKISSAVIDDGLINKEEFQLALFK----TN--KK-ESL----------FADRVFDLFDTKHNGILGFEEFARALSVFH 112 (174)
Q Consensus 50 ~F~~~d~~~~~~g~i~~~ef~~~l~~----~~--~~-~~~----------~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~ 112 (174)
.|..+|.| ++|.++-.|+.+.+.. +. .+ .+. +...+++.+|.+.+..||++||+..-...-
T Consensus 249 FF~LHD~N--sDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 249 FFALHDLN--SDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred heeeeccC--CcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 45556667 8999999999876522 10 01 111 144588889999999999999998665443
Q ss_pred CCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 113 PNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 113 ~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
. ..+.+.|.. .+..-. .|-+|+.++=+.+
T Consensus 327 f-~~p~e~WEt------l~q~~~-yTeEEL~~fE~e~ 355 (442)
T KOG3866|consen 327 F-NPPKEEWET------LGQKKV-YTEEELQQFEREY 355 (442)
T ss_pred c-CCcchhhhh------hccccc-ccHHHHHHHHHHH
Confidence 3 333344442 244455 7888887765554
No 128
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=83.06 E-value=14 Score=26.08 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=53.9
Q ss_pred HHHHHHH---cCCCCCcccHHHHHHHHHhh--CCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCH
Q 030614 85 DRVFDLF---DTKHNGILGFEEFARALSVF--HPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSD 159 (174)
Q Consensus 85 ~~lf~~~---d~~~~g~I~~~ef~~~l~~~--~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~ 159 (174)
+.+|..| .......++-..|..++.-- .....+...+..+|..+-..+... |++++|...|..+....+...+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~-I~f~~F~~aL~~lA~~~~~~~~- 79 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARK-ITFEQFLEALAELAEKKGKDKS- 79 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SE-EEHHHHHHHHHHHHHHHSCCCT-
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcc-cCHHHHHHHHHHHHHHhhcccc-
Confidence 4455555 23334567777777776643 222456778999999987777788 9999999999988664443222
Q ss_pred HHHHHHHHHHh
Q 030614 160 DVIETIIDKVL 170 (174)
Q Consensus 160 ~~i~~i~~~i~ 170 (174)
.+++++..|.
T Consensus 80 -~~~~~~~kl~ 89 (154)
T PF05517_consen 80 -SAEELKEKLT 89 (154)
T ss_dssp -HHHHHHHHHH
T ss_pred -cHHHHHHHHH
Confidence 6677777664
No 129
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=80.76 E-value=7.7 Score=31.09 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=79.6
Q ss_pred chHHHHHhcCCCHHHHHHHHHHHHhhccCC-CCCCcccHHHHHHHHhc----cC--CCch----------HHHHHHHHHH
Q 030614 29 DPEILARETVFSVSEIEALYELFKKISSAV-IDDGLINKEEFQLALFK----TN--KKES----------LFADRVFDLF 91 (174)
Q Consensus 29 ~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~-~~~g~i~~~ef~~~l~~----~~--~~~~----------~~~~~lf~~~ 91 (174)
.++-+.+..++---+|=.+.+.|....-|. +++-.|..+-+...+.. .. +... -.+..+...+
T Consensus 40 klrFiqkk~~~hlvdiwnmieafren~ln~l~~~tei~~srlea~lstif~qlnkrL~ss~~id~e~sislllaflLaA~ 119 (434)
T KOG4301|consen 40 KLRFIQKKCNLHLVDIWNMIEAFRENGLNNLDPNTEINVSRLEAVLSTIFYQLNKRLPSSHQIDVEQSISLLLAFLLAAE 119 (434)
T ss_pred CCcceeccCCchhHHHHHHHHHHHhccccCCCCcchhhhhHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHhhc
Confidence 344445556666666666667776544332 13444555555544311 11 1100 1255677888
Q ss_pred cCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHH
Q 030614 92 DTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLA 151 (174)
Q Consensus 92 d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~ 151 (174)
|+.+.|+++.-....++...+. +...++++++|.... |.+|. +..-.+.++++.+++
T Consensus 120 ds~~~g~~~vfavkialatlc~-gk~~dklryIfs~is-ds~gi-m~~i~~~~fl~evls 176 (434)
T KOG4301|consen 120 DSEGQGKQQVFAVKIALATLCG-GKIKDKLRYIFSLIS-DSRGI-MQEIQRDQFLHEVLS 176 (434)
T ss_pred CccCCCCceeecchhhhhhhcc-chHHHHHHHHHHHHc-cchHH-HHHHHHHHHHHHHHc
Confidence 9999999998888888988887 788899999999994 77788 888888888887654
No 130
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=80.30 E-value=7.6 Score=25.73 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 121 ~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
+-.+|-+++.-++.. .+..+++.+|.. +|.+++++.++.++..+
T Consensus 3 yvaAYLL~~lgGn~~-psa~DikkIl~s----VG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNAS-PSASDIKKILES----VGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCC-CCHHHHHHHHHH----hCcccCHHHHHHHHHHh
Confidence 345677777888888 999999999999 79999999988887664
No 131
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=80.26 E-value=7.7 Score=25.29 Aligned_cols=62 Identities=18% Similarity=0.363 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCC-CchHHHHHHHHHHcCC---CCCcccHHHHHHHHHhh
Q 030614 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-KESLFADRVFDLFDTK---HNGILGFEEFARALSVF 111 (174)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~lf~~~d~~---~~g~I~~~ef~~~l~~~ 111 (174)
....+...|+.+. .+|+++.+.|..++ +. ....++.++|+....- ..+.|+-+|+..+|..+
T Consensus 28 ~W~~VE~RFd~La----~dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLA----KDGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-----BTTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC----cCCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 4678888999887 68899999999887 33 3455677888777542 23567777777777544
No 132
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=78.65 E-value=4.7 Score=38.38 Aligned_cols=56 Identities=20% Similarity=0.395 Sum_probs=41.4
Q ss_pred HHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 030614 51 FKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARAL 108 (174)
Q Consensus 51 F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l 108 (174)
|+..|++ +.|.|+..+|..++.+.........+-+......|.+...+|.+|+.-+
T Consensus 4063 fkeydpd--gkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4063 FKEYDPD--GKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred chhcCCC--CCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4567788 8888999999998865433344456677777777888888999887654
No 133
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=76.44 E-value=6.6 Score=34.03 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH
Q 030614 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 99 I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
|+|..|...+..+.+-.....-+..+|+.+|.+++|. |++.++..-|..+.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~-Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGL-LTFKDLVSGLSILK 585 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcce-eEHHHHHHHHHHHH
Confidence 5566666666555443344556788999999999999 99999999887764
No 134
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.93 E-value=2.4 Score=38.31 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhC
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~ 112 (174)
..++.+...+.+.|...+.+ .+|.|+..+....+...+ ...+.+..++...|.++.|.+++.+|...+....
T Consensus 276 ~vsp~d~~~~~~if~q~d~~--~dG~I~s~~~~~~f~~~g-l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKD--NDGSISSNEARNIFLPFG-LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred ccChHHHHHHHHHHHhcccc--CCCcccccccccccccCC-CChhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 67888889999999999998 999999999998875533 3444578899999999999999999988776554
No 135
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=73.89 E-value=21 Score=22.91 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=43.1
Q ss_pred CCCcccHHHHHHHHh---c-cCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCc
Q 030614 60 DDGLINKEEFQLALF---K-TNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGF 135 (174)
Q Consensus 60 ~~g~i~~~ef~~~l~---~-~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~ 135 (174)
-||.++..|...+-. . .+. +......+...+........++.+|...+............+..+|++.-. ||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~ 88 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGL-DAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGE 88 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCC
Confidence 356666666554421 1 111 222345555555444444567888877776544223333455666666633 466
Q ss_pred cccHHHHHHH
Q 030614 136 FIERQEVKQM 145 (174)
Q Consensus 136 ~I~~~el~~~ 145 (174)
++..|-.-+
T Consensus 89 -~~~~E~~~l 97 (104)
T cd07313 89 -LDEYEEHLI 97 (104)
T ss_pred -CCHHHHHHH
Confidence 777665543
No 136
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=73.57 E-value=6.4 Score=17.95 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=12.3
Q ss_pred cCCCCCccccHHHHHHHHH
Q 030614 129 DLKQQGFFIERQEVKQMVV 147 (174)
Q Consensus 129 D~~~~G~~I~~~el~~~l~ 147 (174)
|.|+||. |+.-++..+-+
T Consensus 1 DvN~DG~-vna~D~~~lk~ 18 (21)
T PF00404_consen 1 DVNGDGK-VNAIDLALLKK 18 (21)
T ss_dssp -TTSSSS-SSHHHHHHHHH
T ss_pred CCCCCCc-CCHHHHHHHHH
Confidence 6788888 88877765543
No 137
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.35 E-value=6.8 Score=33.05 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHH-hcCCCCC
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLA-ESGMNLS 158 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~-~~~~~l~ 158 (174)
+-.-|+.+..|-+|.|+=.--..++. +...+-+++..+|++.|.++||- ++..||...+..+.. ..|..+.
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFt---KSklpi~ELshIWeLsD~d~DGA-LtL~EFcAAfHLVVaRkNgypLP 304 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFT---KSKLPIEELSHIWELSDVDRDGA-LTLSEFCAAFHLVVARKNGYPLP 304 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhh---hccCchHHHHHHHhhcccCcccc-ccHHHHHhhHhheeecccCCCCC
Confidence 44566777777788876554333332 22566788999999999999999 999999998876532 3454443
No 138
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=72.44 E-value=20 Score=23.64 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=38.9
Q ss_pred HHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q 030614 123 FSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPNL 173 (174)
Q Consensus 123 ~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~~ 173 (174)
.+-+.+...++|. -.+++-.+.+...+...|..+|+++++.++..-..++
T Consensus 55 aveq~~~~~~~G~-~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m 104 (108)
T PF09682_consen 55 AVEQVAKEGGKGE-EKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEM 104 (108)
T ss_pred HHHHHHhccCCcH-HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3445555555888 8888888888888777899999999999998776553
No 139
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=72.33 E-value=4.1 Score=24.22 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=16.5
Q ss_pred HHhcCCCCCccccHHHHHHHHHH
Q 030614 126 QLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 126 ~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
++||+..+.+ |+.+++.+++..
T Consensus 10 RLYDT~~s~Y-iTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSY-ITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCcee-EeHHHHHHHHHC
Confidence 4677777888 888888877764
No 140
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=72.07 E-value=18 Score=24.19 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 121 ~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
+..+|-+.-.-++.. +|.+++..+++. .|.+.++..+..+++.+
T Consensus 5 yvaAYlL~~lgG~~~-pTaddI~kIL~A----aGveVd~~~~~l~~~~L 48 (112)
T PTZ00373 5 YVAAYLMCVLGGNEN-PTKKEVKNVLSA----VNADVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHHHHcCCCC-CCHHHHHHHHHH----cCCCccHHHHHHHHHHH
Confidence 345566666777888 999999999999 79899998888887654
No 141
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=71.33 E-value=1.7 Score=32.03 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCCCCccccHHHH
Q 030614 121 IEFSFQLYDLKQQGFFIERQEV 142 (174)
Q Consensus 121 ~~~~F~~~D~~~~G~~I~~~el 142 (174)
+...|.-.|.|+||+ |+..|+
T Consensus 224 ~~~f~e~cd~~nd~~-ial~ew 244 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKY-IALDEW 244 (259)
T ss_pred chhhhhcccCCCCCc-eeHHHh
Confidence 344444555555555 554444
No 142
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=71.28 E-value=55 Score=26.72 Aligned_cols=65 Identities=22% Similarity=0.460 Sum_probs=50.1
Q ss_pred HHHHHHHcC-CCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHH
Q 030614 85 DRVFDLFDT-KHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLA 151 (174)
Q Consensus 85 ~~lf~~~d~-~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~ 151 (174)
+.+|..... .++..++++.+....+.... +..++..+.++...|.+++|. .....+.+++..++.
T Consensus 60 q~~f~~vk~~~q~~~~~l~k~~~~~~~~~~-gt~dq~a~mL~~~~~~sgn~~-~~~~q~eQ~~~~vlk 125 (427)
T KOG2557|consen 60 QRMFDMVKQRRQDDKMTLEKLVIAKATYEK-GTDDQIAEMLYQTLDVNGNGV-LSRSQLEQFLVVVLK 125 (427)
T ss_pred ceEeeeccCccCCccchHHHHhhHHhhhcc-CcccHHHHHHHHHHhhccccc-cchhHHHHHHHHHhh
Confidence 344444432 23457888888777666655 778888999999999999999 999999999988775
No 143
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=70.47 E-value=25 Score=22.82 Aligned_cols=66 Identities=9% Similarity=0.139 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 99 I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
+.-.++.-.+..+.+ ..+++++..+-..+-.++... .+..|+...+..+ +++.-++++++.+..++
T Consensus 20 vP~~Dy~PLlALL~r-~Ltd~ev~~Va~~L~~~~~~~-~~~~dI~~~I~~v---t~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLALLRR-RLTDDEVAEVAAELAARGDPP-VDRIDIGVAITRV---TDELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHHHHTT-TS-HHHHHHHHHHHHHHTSS--BSCCHHHHHHHHH---CSS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcc-cCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHH---HcCCcCHHHHHHHHHHH
Confidence 667777777777777 678888888777777777777 8888888888886 66777888888877665
No 144
>PLN02228 Phosphoinositide phospholipase C
Probab=69.48 E-value=29 Score=30.03 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhhC
Q 030614 83 FADRVFDLFDTKHNGILGFEEFARALSVFH 112 (174)
Q Consensus 83 ~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~ 112 (174)
.+..+|..+..+ +.++.++|..++...+
T Consensus 25 ei~~if~~~s~~--~~~t~~~~~~FL~~~Q 52 (567)
T PLN02228 25 SIKRLFEAYSRN--GKMSFDELLRFVSEVQ 52 (567)
T ss_pred HHHHHHHHhcCC--CccCHHHHHHHHHHhc
Confidence 344444444321 2344444444444443
No 145
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=68.09 E-value=23 Score=25.36 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 116 ~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
.+..++..+++.+-.++... ++.++|.+... +|..+|+++++..+..+|.+
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~-~d~~~Fe~~cG-----VGV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEP-IDVAEFEKACG-----VGVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G---HHHHHHTTT-----TT----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCC-CCHHHHHHHcC-----CCeEECHHHHHHHHHHHHHH
Confidence 45678888999887777778 99999987643 68899999999999888864
No 146
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=67.06 E-value=26 Score=23.26 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 122 EFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 122 ~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
..+|-+.-..++.. +|.+++..+++. .|.+.++..+..+++.+
T Consensus 4 vaAylL~~l~g~~~-pTa~dI~~IL~A----aGveVe~~~~~lf~~~L 46 (109)
T cd05833 4 VAAYLLAVLGGNAS-PSAADVKKILGS----VGVEVDDEKLNKVISEL 46 (109)
T ss_pred HHHHHHHHHcCCCC-CCHHHHHHHHHH----cCCCccHHHHHHHHHHH
Confidence 44566666677778 999999999998 78888888887776643
No 147
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=66.49 E-value=19 Score=19.59 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhccCCCCCCcccHHHHHHHHh
Q 030614 43 EIEALYELFKKISSAVIDDGLINKEEFQLALF 74 (174)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~ 74 (174)
.+..+...|+......+....++..||+..+.
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 35566677777765433566799999998774
No 148
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=66.38 E-value=8.2 Score=26.83 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=40.5
Q ss_pred CCCchHHHHHhcCCCHHHHHHHHHHHHhhcc----CCCCCCcccHHHHHHHHhc-cCC-CchHHHHHHHHHHcCCC
Q 030614 26 GLEDPEILARETVFSVSEIEALYELFKKISS----AVIDDGLINKEEFQLALFK-TNK-KESLFADRVFDLFDTKH 95 (174)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~----~~~~~g~i~~~ef~~~l~~-~~~-~~~~~~~~lf~~~d~~~ 95 (174)
++.+..++.+-...+...++.+.+.|+.-.. + +.+.|+++-|+..|.. ... -|.+.++.+|..|-...
T Consensus 9 sp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~--~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 9 SPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYN--PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGE--ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 3488888888777788899999999962111 1 4557999999987743 221 47778999999997654
No 149
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.99 E-value=8.9 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 117 ~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
+.++++.+|..+|+.+.|+ |+-+-+..++..+
T Consensus 307 ~s~q~rR~f~a~d~~d~nf-is~s~~~~vm~~~ 338 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNF-ISCSGLQIVMTAL 338 (449)
T ss_pred CCHHHHhhhhccCccCCCe-eecHHHHHHHHHh
Confidence 5678999999999999999 9999999998873
No 150
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=64.85 E-value=53 Score=30.09 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=53.8
Q ss_pred CCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCC---------CChHHHHHHHHHHhcCCC----CCccccHHHHHH
Q 030614 78 KKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPN---------APIDDKIEFSFQLYDLKQ----QGFFIERQEVKQ 144 (174)
Q Consensus 78 ~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~---------~~~~~~~~~~F~~~D~~~----~G~~I~~~el~~ 144 (174)
+++.+.+++||..+..++..++|.+++..++...++. .....+++.+.+.|..|. +|. ++.+-|..
T Consensus 217 lcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gq-ms~dgf~r 295 (1189)
T KOG1265|consen 217 LCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQ-MSTDGFVR 295 (1189)
T ss_pred cCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccc-cchhhhHH
Confidence 3567789999999999888899999999999877651 124467888899987765 477 88888877
Q ss_pred HH
Q 030614 145 MV 146 (174)
Q Consensus 145 ~l 146 (174)
.+
T Consensus 296 yl 297 (1189)
T KOG1265|consen 296 YL 297 (1189)
T ss_pred Hh
Confidence 66
No 151
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=64.52 E-value=35 Score=31.05 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCCh-HHHHHHHH---HHhcCCCCCccccHHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPI-DDKIEFSF---QLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~-~~~~~~~F---~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
++.+|+.++....|.+++++|+..+......... ++-+..+| ..-|.+.-|. +++.++.+.|..
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~q-v~~~e~~ddl~R 816 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQ-VQLLEFEDDLER 816 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccc-eeHHHHHhHhhh
Confidence 7789999999888999999999999888764443 22333444 4456677799 999999998876
No 152
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=64.47 E-value=18 Score=22.89 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
||.+||.++-+. .|..+|+.+++.++.-
T Consensus 15 iT~~eLlkyskq----y~i~it~~QA~~I~~~ 42 (85)
T PF11116_consen 15 ITAKELLKYSKQ----YNISITKKQAEQIANI 42 (85)
T ss_pred CCHHHHHHHHHH----hCCCCCHHHHHHHHHH
Confidence 666666666555 4666666666655543
No 153
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=64.32 E-value=13 Score=23.16 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=17.0
Q ss_pred CCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 132 QQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 132 ~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
..|+ ||++|+...|.. ..+++++++.++..+
T Consensus 18 ~~G~-lT~~eI~~~L~~------~~~~~e~id~i~~~L 48 (82)
T PF03979_consen 18 KKGY-LTYDEINDALPE------DDLDPEQIDEIYDTL 48 (82)
T ss_dssp HHSS--BHHHHHHH-S-------S---HHHHHHHHHHH
T ss_pred hcCc-CCHHHHHHHcCc------cCCCHHHHHHHHHHH
Confidence 4677 777777777643 346777777776654
No 154
>PLN02859 glutamine-tRNA ligase
Probab=62.55 E-value=1.2e+02 Score=27.47 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 115 APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 115 ~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
-.+..++..+++..-.++... ++..+|.+.-. +|..+|+++++..+..++++
T Consensus 83 IkT~~Ql~AA~kYl~~~~~~~-~d~~~Fek~CG-----VGV~VT~EqI~~~V~~~i~~ 134 (788)
T PLN02859 83 IKTPAQLEAAFSFFSSTGPES-FDLNKFEEACG-----VGVVVSPEDIEAAVNEVFEE 134 (788)
T ss_pred CCCHHHHHHHHHHHHhCCCCc-cCHHHHHHhCC-----CCEEECHHHHHHHHHHHHHh
Confidence 355678999999997776668 88888886632 68889999999998888764
No 155
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=62.00 E-value=19 Score=21.29 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=13.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETI 165 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i 165 (174)
++.+|...++..++ ...+++.++-.+
T Consensus 15 Ls~~e~~~~~~~i~---~g~~s~~qiaAf 40 (66)
T PF02885_consen 15 LSREEAKAAFDAIL---DGEVSDAQIAAF 40 (66)
T ss_dssp --HHHHHHHHHHHH---TTSS-HHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHH
Confidence 77777777777764 224555554433
No 156
>PLN02222 phosphoinositide phospholipase C 2
Probab=59.05 E-value=50 Score=28.72 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC---chHHHHHHHHHHcC-CCCCcccHHHHHHHHH
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK---ESLFADRVFDLFDT-KHNGILGFEEFARALS 109 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~---~~~~~~~lf~~~d~-~~~g~I~~~ef~~~l~ 109 (174)
...+.++..++..|. +++.|+.++|...|...+.. ....++.+++.+.. ...+.++++.|..+|.
T Consensus 21 ~~~~~ei~~if~~~~-------~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 21 SEAPREIKTIFEKYS-------ENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CCCcHHHHHHHHHhc-------CCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 346666666665543 23467777777766443221 22235566665532 2245577777776663
No 157
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=58.38 E-value=8.8 Score=25.32 Aligned_cols=65 Identities=25% Similarity=0.348 Sum_probs=37.6
Q ss_pred HHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHH
Q 030614 90 LFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESG-MNLSDDVIETIID 167 (174)
Q Consensus 90 ~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~-~~l~~~~i~~i~~ 167 (174)
.+|...+.+||+++...+... -.-|++.|.....- ||..=+.+++-.--. .| .-++..-+.++|+
T Consensus 11 LYDT~tS~YITLedi~~lV~~-----------g~~f~V~DakTgeD-iT~~iL~QII~E~E~-~g~~~lp~~~L~qlIr 76 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVRE-----------GREFQVVDSKSGDD-LTRSILLQIIAEEES-GGEPVLSTDFLTQIIR 76 (107)
T ss_pred ccCCCccceeeHHHHHHHHHC-----------CCeEEEEECCCCch-hHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHH
Confidence 456666777777776655421 12366777665556 777777776655322 23 2355555555554
No 158
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=57.82 E-value=32 Score=25.57 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=23.8
Q ss_pred CCCCCccccHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHHh
Q 030614 130 LKQQGFFIERQEVKQMVVATLAE--------SGMNLSDDVIETIIDKVL 170 (174)
Q Consensus 130 ~~~~G~~I~~~el~~~l~~l~~~--------~~~~l~~~~i~~i~~~i~ 170 (174)
.-..|. |..++|+.++..++.+ -.+.++.++++++++.+|
T Consensus 36 dak~G~-Id~~e~kkav~~liEAde~lYksaP~H~L~~E~AkeFck~l~ 83 (215)
T PF09873_consen 36 DAKPGK-IDVEEFKKAVYSLIEADEYLYKSAPSHELNGEEAKEFCKLLF 83 (215)
T ss_pred CCCCCc-ccHHHHHHHHHHHHHHHHHHHhcCCcccccHhHHHHHHHHHH
Confidence 345566 6666666666655531 345566677777666665
No 159
>PLN02230 phosphoinositide phospholipase C 4
Probab=57.19 E-value=66 Score=28.12 Aligned_cols=67 Identities=4% Similarity=-0.005 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCC--CChHHHHHHHHHHh-------cCCCCCccccHHHHHHHHHH
Q 030614 80 ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPN--APIDDKIEFSFQLY-------DLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 80 ~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~--~~~~~~~~~~F~~~-------D~~~~G~~I~~~el~~~l~~ 148 (174)
+.+.+..+|..+..++ +.++.++|..+|...++. ....+.+..++..+ ..-..+. ++.+.|..+|..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRN-LTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccc-cCHHHHHHHHcC
Confidence 4456777777775443 678888888888777641 12334444444332 2223456 788888777643
No 160
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=56.96 E-value=50 Score=22.11 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=31.2
Q ss_pred HHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 123 FSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 123 ~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
.+|-+.-..++.. +|.+++..+|.. .|.+.++..+..+++.+
T Consensus 5 aAyll~~l~g~~~-pta~dI~~IL~A----aGvevd~~~~~~f~~~L 46 (113)
T PLN00138 5 AAYLLAVLGGNTC-PSAEDLKDILGS----VGADADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHHhcCCCC-CCHHHHHHHHHH----cCCcccHHHHHHHHHHH
Confidence 3444444566667 999999999998 78888888887776543
No 161
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.74 E-value=26 Score=19.33 Aligned_cols=33 Identities=30% Similarity=0.607 Sum_probs=23.9
Q ss_pred CCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 132 QQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 132 ~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
+.|. |+ +++..+..+ ...|.+++++.++.+.+.
T Consensus 14 ~~Gl-I~--~~~~~l~~l-~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGL-IS--EVKPLLDRL-QQAGFRISPKLIEEILRR 46 (48)
T ss_pred HcCC-hh--hHHHHHHHH-HHcCcccCHHHHHHHHHH
Confidence 4577 77 666666665 337899999988887764
No 162
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=53.74 E-value=1.2e+02 Score=25.08 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=59.2
Q ss_pred CCcccHHHHHHHHhccC-CCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCcc--c
Q 030614 61 DGLINKEEFQLALFKTN-KKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFF--I 137 (174)
Q Consensus 61 ~g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~--I 137 (174)
.-.+....|..+|.... ....-++..+=..+|...++.|+--||=.+-..++. ... +-.-++.....+-|++ +
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqP---w~t-llkNWq~LavtHPGYmAFL 263 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQP---WKT-LLKNWQTLAVTHPGYMAFL 263 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhcc---HHH-HHHhhhhhhccCCceeEEe
Confidence 34577778888775432 223334556667778888999988888766655543 222 2233456667788874 8
Q ss_pred cHHHHHHHHHHHHHhcC
Q 030614 138 ERQEVKQMVVATLAESG 154 (174)
Q Consensus 138 ~~~el~~~l~~l~~~~~ 154 (174)
|++|++.-|+.+..+-|
T Consensus 264 TYDEVk~RLqk~~~KpG 280 (563)
T KOG1785|consen 264 TYDEVKARLQKYIKKPG 280 (563)
T ss_pred eHHHHHHHHHHHhcCCC
Confidence 99999999998765433
No 163
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=53.39 E-value=69 Score=21.77 Aligned_cols=76 Identities=11% Similarity=0.222 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIE 163 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~ 163 (174)
+..+++.|-. ++|+-+..+..+...-+...+..++..++..+= .=..+..+++.+. .+.+++++++.
T Consensus 39 l~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~--------~n~~I~~Il~~~v--d~~~l~dddi~ 105 (122)
T PF06648_consen 39 LIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVY--------NNRYIINILQKFV--DGQHLTDDDIS 105 (122)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHH--------ccHHHHHHHHHHh--cCccCCcccHH
Confidence 4556666643 467777777777655322455666666666652 1123445555544 35668888877
Q ss_pred HHHHHHhhh
Q 030614 164 TIIDKVLPN 172 (174)
Q Consensus 164 ~i~~~i~~~ 172 (174)
.+..-++.|
T Consensus 106 ~ls~FLV~e 114 (122)
T PF06648_consen 106 YLSEFLVHE 114 (122)
T ss_pred HHHHHHHHH
Confidence 777666544
No 164
>TIGR01673 holin_LLH phage holin, LL-H family. This model represents a putative phage holin from a number of phage and prophage regions of Gram-positive bacteria. Like other holins, it is small (about 100 amino acids) with stretches of hydrophobic sequence and is encoded adjacent to lytic enzymes.
Probab=51.70 E-value=69 Score=21.24 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhhhc
Q 030614 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGM-NLSDDVIETIIDKVLPNL 173 (174)
Q Consensus 121 ~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~-~l~~~~i~~i~~~i~~~~ 173 (174)
...+.+..+..++|. -..+.-.+.+...+...|. .+|+.+++..+..-..+|
T Consensus 52 v~aVeq~~~~~~~G~-~K~~~A~~~v~~~L~~~~i~~~t~~~i~~~IE~aV~~M 104 (108)
T TIGR01673 52 VSAVQQNFNESGGGA-EKLEQAFNYITEELKKAHIPKPSDAQIEGAIEAAVAEM 104 (108)
T ss_pred HHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 355667777677888 8888888888888887887 899999999998766543
No 165
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=51.58 E-value=58 Score=20.32 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 030614 139 RQEVKQMVVATLAESGMNLSDDVIETIIDKVLP 171 (174)
Q Consensus 139 ~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~ 171 (174)
...++++++.+....|.+++++..++++.-|..
T Consensus 30 E~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~ 62 (79)
T PF14069_consen 30 EKKVRQLIKQVSQIANKPVSKEQEDQIVQAIIN 62 (79)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 334445555544446777777777777776654
No 166
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=48.94 E-value=19 Score=24.43 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=42.9
Q ss_pred CCCcccHHHHHHHHhcc---CCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCcc
Q 030614 60 DDGLINKEEFQLALFKT---NKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFF 136 (174)
Q Consensus 60 ~~g~i~~~ef~~~l~~~---~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~ 136 (174)
-||.++.+|...+..-. ...+......+...++.......++.+++..+............++.++.+.-.| |.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~- 112 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GE- 112 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CC-
Confidence 58889999888654221 1112333455565555443446788888776654322122334567778887665 45
Q ss_pred ccHHHHH
Q 030614 137 IERQEVK 143 (174)
Q Consensus 137 I~~~el~ 143 (174)
++..|-.
T Consensus 113 ~~~~E~~ 119 (140)
T PF05099_consen 113 ISPEEQE 119 (140)
T ss_dssp -SCCHHH
T ss_pred CCHHHHH
Confidence 5555543
No 167
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=48.56 E-value=83 Score=21.25 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 030614 118 DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLP 171 (174)
Q Consensus 118 ~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~ 171 (174)
..++.+.|..+...+.++ |+.+-+...+.-+- .|.....+.+..++.+++.
T Consensus 20 q~ka~Q~f~~~s~~~k~f-I~~~vliE~V~vL~--~~y~~~rE~i~~VIetll~ 70 (130)
T COG5611 20 QTKAEQFFEELSQKGKLF-IPEEVLIELVYVLE--HGYKWEREDIYEVIETLLN 70 (130)
T ss_pred HHHHHHHHHhcCcCCCcc-chHHHHHHHHHHHH--hcchhhHHHHHHHHHHHhc
Confidence 345777888888888888 88877777666553 3445666667777766554
No 168
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=48.48 E-value=56 Score=20.60 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhcCCCCCcccc
Q 030614 117 IDDKIEFSFQLYDLKQQGFFIE 138 (174)
Q Consensus 117 ~~~~~~~~F~~~D~~~~G~~I~ 138 (174)
.+.++..||+++-.|++.. +.
T Consensus 57 S~~EL~EA~rl~~~n~~~~-l~ 77 (83)
T cd06404 57 SQMELEEAFRLYELNKDSE-LN 77 (83)
T ss_pred CHHHHHHHHHHHHhcCccc-EE
Confidence 4567888888888888776 54
No 169
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=47.74 E-value=68 Score=20.02 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=34.2
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCC
Q 030614 35 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTK 94 (174)
Q Consensus 35 ~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~ 94 (174)
+..+|+.+++..+.+.|..+-. +..+.++-...+... ...++.++.+.+-+...
T Consensus 24 rR~Gfs~~~i~~l~~ayr~l~~-----~~~~~~~a~~~l~~~-~~~~~~v~~~~~Fi~~S 77 (83)
T PF13720_consen 24 RRRGFSKEEISALRRAYRILFR-----SGLTLEEALEELEEE-YPDSPEVREIVDFIRNS 77 (83)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHT-----SSS-HHHHHHHHHHH-TTSCHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHh-ccCCHHHHHHHHHHHhC
Confidence 4668999999999999998853 224666666555431 23466666666665433
No 170
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=46.65 E-value=42 Score=24.39 Aligned_cols=33 Identities=9% Similarity=0.406 Sum_probs=21.9
Q ss_pred CCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 030614 130 LKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIID 167 (174)
Q Consensus 130 ~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~ 167 (174)
.|.+|+ +..+++...++. .+.++|.+.+.+++.
T Consensus 28 ld~~G~-v~v~~Ll~~~~~----~~~~~t~~~l~~vV~ 60 (179)
T PRK00819 28 LDEEGW-VDIDALIEALAK----AYKWVTRELLEAVVE 60 (179)
T ss_pred cCCCCC-EEHHHHHHHHHH----ccCCCCHHHHHHHHH
Confidence 467777 777777776654 345577777776664
No 171
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=46.64 E-value=74 Score=20.15 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 98 ILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 98 ~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
.||..|++.......- .-+.+.++.+....=.++=.. ...++-.+++..+.. +|+.+...-+.++|.+
T Consensus 14 ~iT~~eLlkyskqy~i-~it~~QA~~I~~~lr~k~inI-fn~~~r~~llkeia~-----iT~p~ta~~vn~Lf~q 81 (85)
T PF11116_consen 14 NITAKELLKYSKQYNI-SITKKQAEQIANILRGKNINI-FNEQERKKLLKEIAK-----ITSPQTAKQVNELFEQ 81 (85)
T ss_pred cCCHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHH
Confidence 4888898887766654 566778888888887777777 888888888888643 4444445555555544
No 172
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=45.34 E-value=3.3e+02 Score=27.25 Aligned_cols=59 Identities=14% Similarity=0.320 Sum_probs=45.6
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHH
Q 030614 86 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (174)
Q Consensus 86 ~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~ 147 (174)
.-|+.+|.|+.|.|+-.+|-.++..-- .-+..++.++......|.+.. +.++||..-..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k--~ytqse~dfllscae~dend~-~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK--HYTQSEIDFLLSCAEADENDM-FDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc--cchhHHHHHHHHhhccCcccc-ccHHHHHHHhc
Confidence 357777899999999999988775432 245567888888888888888 99999887654
No 173
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=45.17 E-value=41 Score=24.54 Aligned_cols=35 Identities=9% Similarity=0.375 Sum_probs=20.8
Q ss_pred cCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 129 DLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 129 D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
..+.+|+ +..+|+.+.+.. .+.++|.+++++++.+
T Consensus 26 ~~d~~G~-v~v~dLL~~~~~----~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 26 VMDPDGW-VSVDDLLRALRF----KGLWVTEEDIREVVET 60 (186)
T ss_dssp ---TT---EEHHHHHHHHHH----T-TT--HHHHHHHHHH
T ss_pred ccCCCCC-EeHHHHHHHHHH----cCCCCCHHHHHHHHhh
Confidence 3678888 888888887766 5666788888887764
No 174
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=44.89 E-value=64 Score=21.24 Aligned_cols=33 Identities=12% Similarity=0.337 Sum_probs=26.0
Q ss_pred CCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 131 KQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 131 ~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
++... +|.+++..+|.. .|.+++++.+..+++.
T Consensus 12 ~~g~~-~ta~~I~~IL~a----aGveVe~~~~~~~~~a 44 (105)
T cd04411 12 KGGKE-LTEDKIKELLSA----AGAEIEPERVKLFLSA 44 (105)
T ss_pred hcCCC-CCHHHHHHHHHH----cCCCcCHHHHHHHHHH
Confidence 34445 899999999988 7888888888877765
No 175
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=44.82 E-value=36 Score=23.22 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 83 FADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 83 ~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
.+..+++.||++++|.|..-.|..++..+
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 36679999999999999999999888654
No 176
>PLN02230 phosphoinositide phospholipase C 4
Probab=44.18 E-value=91 Score=27.30 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHh
Q 030614 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGM--NLSDDVIETIIDKVL 170 (174)
Q Consensus 116 ~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~--~l~~~~i~~i~~~i~ 170 (174)
.+...++.+|..|-.++ +. ++.++|..+|... .+. ..+.+.++.++.++.
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~-mt~~~l~~FL~~~---Q~~~~~~~~~~~~~i~~~~~ 77 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AH-MSPEQLQKLMAEE---GGGEGETSLEEAERIVDEVL 77 (598)
T ss_pred CCcHHHHHHHHHHhCCC-Cc-cCHHHHHHHHHHh---CCCcccCCHHHHHHHHHHHH
Confidence 35578999999996444 79 9999999999984 322 356778888887654
No 177
>PLN02228 Phosphoinositide phospholipase C
Probab=43.91 E-value=1.1e+02 Score=26.58 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCC---chHHHHHHHHHHcCC----CCCcccHHHHHHHHHh
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK---ESLFADRVFDLFDTK----HNGILGFEEFARALSV 110 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~---~~~~~~~lf~~~d~~----~~g~I~~~ef~~~l~~ 110 (174)
.-.+.++..++..+. +++.|+.++|...|...+.. ....+..++..+... ..|.++++.|..+|..
T Consensus 20 ~~~~~ei~~if~~~s-------~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYS-------RNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhc-------CCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 346778888876654 23579999999888554321 233477888887543 3467999999888754
No 178
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=42.13 E-value=82 Score=19.64 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
+|.+|+.......+...+. ++++++..++...++.
T Consensus 42 ~t~eemie~~~~~~~~~~~-~~~~~a~~~~~~~lp~ 76 (81)
T PF12674_consen 42 ITMEEMIEFCVPFMDEFNG-MTPEEARKMMPRYLPT 76 (81)
T ss_pred CCHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHccC
Confidence 6778887776666543332 7888888888777764
No 179
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=41.63 E-value=1.2e+02 Score=23.17 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=36.0
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCC
Q 030614 35 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNG 97 (174)
Q Consensus 35 ~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g 97 (174)
+...|+++++..+.+.|+.+-. +| ++.++-...+.. ....++.++.+.+-+...+.|
T Consensus 196 ~r~g~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~s~rg 252 (255)
T PRK12461 196 RRRGFSSRAIRALKRAYKIIYR----SG-LSVQQAVAELEL-QQFESPEVEELIDFIKASKRG 252 (255)
T ss_pred hhcCCCHHHHHHHHHHHHHHHh----cC-CCHHHHHHHHHH-hccCCHHHHHHHHHHHccCCC
Confidence 4568999999999999998742 33 455655544432 223456666666666444434
No 180
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.57 E-value=56 Score=22.28 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=14.9
Q ss_pred CccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 030614 134 GFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVL 170 (174)
Q Consensus 134 G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~ 170 (174)
|. ||.+|=.++|. +...++.++|+.-...+|
T Consensus 54 ~~-iTlqEa~qILn-----V~~~ln~eei~k~yehLF 84 (132)
T KOG3442|consen 54 GK-ITLQEAQQILN-----VKEPLNREEIEKRYEHLF 84 (132)
T ss_pred cc-ccHHHHhhHhC-----CCCCCCHHHHHHHHHHHH
Confidence 44 55555555543 233445555555444444
No 181
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.23 E-value=71 Score=28.18 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=58.6
Q ss_pred CCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCC-------CCChHHHHHHHHHHhcCCCC
Q 030614 61 DGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHP-------NAPIDDKIEFSFQLYDLKQQ 133 (174)
Q Consensus 61 ~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~-------~~~~~~~~~~~F~~~D~~~~ 133 (174)
+| ++.+++. ......++-.+.+|...|. .+|.++-+++...+..... .....+....++...|.++.
T Consensus 2 ~~-~~~~~~~----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (646)
T KOG0039|consen 2 EG-ISFQELK----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHK 75 (646)
T ss_pred CC-cchhhhc----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccc
Confidence 45 7788888 2233566678889999988 6888888888766554332 12344556778999999999
Q ss_pred CccccHHHHHHHHHH
Q 030614 134 GFFIERQEVKQMVVA 148 (174)
Q Consensus 134 G~~I~~~el~~~l~~ 148 (174)
|+ +..+++.-++..
T Consensus 76 ~y-~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 76 GY-ITNEDLEILLLQ 89 (646)
T ss_pred ce-eeecchhHHHHh
Confidence 99 999999888764
No 182
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=40.16 E-value=71 Score=27.76 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
.+.-|..+|.++.|.++....+..+..... +-+++.+.+..+..|.+-+|. +...|+.+++..+
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~-~~d~~~~~~~l~ea~~~~~g~-v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENV-GWDEDRLHEELQEADENLNGF-VELREFLQLMSAI 658 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcce-eeHHHHHHHHHHH
Confidence 556888999988999999999999988764 566778888888899888999 9999999998875
No 183
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=39.99 E-value=97 Score=19.62 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcc-CCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCC
Q 030614 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT-NKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHP 113 (174)
Q Consensus 39 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~ 113 (174)
++..+-.++.... .+ ..-.++-.+|..+|... +.....+...+=..+|...+|.|+--||-.+.+-+++
T Consensus 4 ITK~eA~~FW~~~---Fg---~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqP 73 (85)
T PF02761_consen 4 ITKAEAAEFWKTS---FG---KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQP 73 (85)
T ss_dssp -SSHHHHHHHHHH---HT---T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT--
T ss_pred eccHHHHHHHHHH---CC---CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHhh
Confidence 4445555554322 22 24468889999888653 3344455667777888888899998888887776654
No 184
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=39.93 E-value=51 Score=23.20 Aligned_cols=32 Identities=9% Similarity=0.350 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc
Q 030614 42 SEIEALYELFKKISSAVIDDGLINKEEFQLALFK 75 (174)
Q Consensus 42 ~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~ 75 (174)
..++.+.+.....|.+ +.++|+.++++++++.
T Consensus 66 ~~Lq~L~~rL~~le~~--rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQ--RGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHh--cCCceeHHHHHHHHHH
Confidence 4666777777777766 6666777777777643
No 185
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.65 E-value=1.1e+02 Score=25.63 Aligned_cols=84 Identities=17% Similarity=0.102 Sum_probs=53.5
Q ss_pred CCCcccHHHHHHHHhccCC-CchH----HHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCC
Q 030614 60 DDGLINKEEFQLALFKTNK-KESL----FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQG 134 (174)
Q Consensus 60 ~~g~i~~~ef~~~l~~~~~-~~~~----~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G 134 (174)
|+...+..||..+...... ..+. -++.|-+.+|-|.+|.|+.+|=-.++..-........+-...|-. .|.
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~ 116 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDK 116 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Ccc
Confidence 5556667777655422111 1122 267788889999999999988777776655433444444445543 344
Q ss_pred ccccHHHHHHHHHH
Q 030614 135 FFIERQEVKQMVVA 148 (174)
Q Consensus 135 ~~I~~~el~~~l~~ 148 (174)
. ||.+|+-..+..
T Consensus 117 ~-ItVedLWeaW~~ 129 (575)
T KOG4403|consen 117 H-ITVEDLWEAWKE 129 (575)
T ss_pred c-eeHHHHHHHHHh
Confidence 5 999999998876
No 186
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=39.06 E-value=15 Score=27.31 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=38.9
Q ss_pred HHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHhhC
Q 030614 51 FKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (174)
Q Consensus 51 F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~ 112 (174)
|..+|+. +-+|+++-.|+.- ++.+.+.-..-..+.|...|.+++|.|..+||...+....
T Consensus 193 f~qld~~-p~d~~~sh~el~p-l~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gikq 252 (259)
T KOG4004|consen 193 FGQLDQH-PIDGYLSHTELAP-LRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQ 252 (259)
T ss_pred eccccCC-Ccccccccccccc-ccCCcccHHhhchhhhhcccCCCCCceeHHHhhcccCcch
Confidence 3344443 2467777776652 2333222222367899999999999999999988775443
No 187
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=38.29 E-value=1.2e+02 Score=20.10 Aligned_cols=29 Identities=14% Similarity=0.422 Sum_probs=25.1
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 135 FFIERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 135 ~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
. ||.+.+..+|+. .|.+.++..+..+++.
T Consensus 16 ~-it~e~I~~IL~A----AGveVee~~~k~~v~a 44 (106)
T PRK06402 16 E-INEDNLKKVLEA----AGVEVDEARVKALVAA 44 (106)
T ss_pred C-CCHHHHHHHHHH----cCCCccHHHHHHHHHH
Confidence 7 999999999998 7888998888887765
No 188
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=37.93 E-value=72 Score=28.49 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLA 151 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~ 151 (174)
+..+|+.....+.-.+..+.+...+ .++.++.+|..++...++. |+++.|+..+..++.
T Consensus 406 A~~iF~nv~~p~~~~i~ld~~~~f~--------~~E~a~~~~slfe~~~~~~-Itrs~~~~~iv~~~~ 464 (714)
T KOG4629|consen 406 ARKIFKNVAKPGVILIDLDDLLRFM--------GDEEAERAFSLFEGASDEN-ITRSSFKEWIVNIYR 464 (714)
T ss_pred HHHHHhccCCCCccchhhhhhhhcC--------CHHHHHHHHHhhhhhcccC-ccHHHHHHHHHHHHH
Confidence 6678888887776677777666543 3577899999999999999 999999998887754
No 189
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=37.84 E-value=75 Score=20.07 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 138 ERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 138 ~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
+..||...+.. ....++..+++.+++.+++.
T Consensus 2 tk~eli~~ia~----~~~~~s~~~~~~vv~~~~~~ 32 (94)
T PRK00199 2 TKSELIERLAA----RNPHLSAKDVENAVKEILEE 32 (94)
T ss_pred CHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHH
Confidence 45555555543 12346666666666666554
No 190
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=37.75 E-value=44 Score=23.49 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=27.0
Q ss_pred CCCchHHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCc
Q 030614 26 GLEDPEILARETVFSVSEIEALYELFKKISSAVIDDGL 63 (174)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~ 63 (174)
+.+.++.+.+..+++..++..+...|..+... +.|+
T Consensus 39 p~~~~~~iA~~l~v~~~~v~~v~tFY~~f~~~--p~gk 74 (154)
T PRK07539 39 PDEAIEAVADYLGMPAIDVEEVATFYSMIFRQ--PVGR 74 (154)
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHHHHhhhCcC--CCCC
Confidence 34888888888899998888887777776554 5554
No 191
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=36.65 E-value=67 Score=25.68 Aligned_cols=29 Identities=31% Similarity=0.580 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCCCccccHHHHHHHHHHHHH
Q 030614 122 EFSFQLYDLKQQGFFIERQEVKQMVVATLA 151 (174)
Q Consensus 122 ~~~F~~~D~~~~G~~I~~~el~~~l~~l~~ 151 (174)
+..|.+.|.|+||+ +.-.|+......=+.
T Consensus 247 KTFF~LHD~NsDGf-ldeqELEaLFtkELE 275 (442)
T KOG3866|consen 247 KTFFALHDLNSDGF-LDEQELEALFTKELE 275 (442)
T ss_pred chheeeeccCCccc-ccHHHHHHHHHHHHH
Confidence 55799999999999 999999887765443
No 192
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=35.99 E-value=84 Score=19.80 Aligned_cols=31 Identities=13% Similarity=0.287 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 138 ERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 138 ~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
+..||...+.. ....++..+++.+++.++.+
T Consensus 2 ~k~eli~~i~~----~~~~~s~~~v~~vv~~~~~~ 32 (94)
T TIGR00988 2 TKSELIERIAT----QQSHLPAKDVEDAVKTMLEH 32 (94)
T ss_pred CHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHH
Confidence 45566555543 12236777777776666654
No 193
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=35.94 E-value=25 Score=18.67 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=18.7
Q ss_pred CCCCCCchHHHHHhcCCCHHHHHHHH
Q 030614 23 PSRGLEDPEILARETVFSVSEIEALY 48 (174)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~i~~l~ 48 (174)
+.++.++...+.+.++++..++...+
T Consensus 9 PYPs~~ek~~L~~~tgls~~Qi~~WF 34 (40)
T PF05920_consen 9 PYPSKEEKEELAKQTGLSRKQISNWF 34 (40)
T ss_dssp GS--HHHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44566888889999999999887765
No 194
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=35.88 E-value=83 Score=18.92 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 030614 120 KIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLP 171 (174)
Q Consensus 120 ~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~ 171 (174)
.+..+....+.+..-. +-..++...+..+...+|...+ ++++++||+
T Consensus 24 ~l~~a~~~l~~~~~~d-l~a~~L~~A~~~L~~ItG~~~~----ediLd~IFs 70 (73)
T PF12631_consen 24 HLEDALEALENGLPLD-LVAEDLREALESLGEITGEVVT----EDILDNIFS 70 (73)
T ss_dssp HHHHHHHHHHTT--HH-HHHHHHHHHHHHHHHHCTSS------HHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHhCCCCh----HHHHHHHHH
Confidence 4555666666555555 8888899888887766776544 445555554
No 195
>PLN02223 phosphoinositide phospholipase C
Probab=34.86 E-value=1.7e+02 Score=25.26 Aligned_cols=53 Identities=11% Similarity=-0.117 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHhh
Q 030614 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESG-MNLSDDVIETIIDKVLP 171 (174)
Q Consensus 117 ~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~-~~l~~~~i~~i~~~i~~ 171 (174)
+.+.++.+|..|- .+.|. ++.+.+.+++.-+....| ...+.++++.++++++.
T Consensus 14 ~p~~v~~~f~~~~-~~~~~-m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~ 67 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDD-DMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKR 67 (537)
T ss_pred CcHHHHHHHHHhh-cCCCC-CCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHh
Confidence 4567788888883 66777 888888888744333244 34677788888887764
No 196
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=34.15 E-value=1e+02 Score=18.03 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHh--cCCCCCccccHHHHHHHHHHHH
Q 030614 116 PIDDKIEFSFQLY--DLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 116 ~~~~~~~~~F~~~--D~~~~G~~I~~~el~~~l~~l~ 150 (174)
.+-+++....+++ +. +... ++.+|++.+|..+.
T Consensus 12 l~l~RIh~mLkmf~~~~-~~~~-~s~~eL~~fL~~lv 46 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDP-GGYD-ISLEELQEFLDRLV 46 (60)
T ss_dssp EEHHHHHHHHHHH-GGG---TT---HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCC-CCCC-CCHHHHHHHHHHHH
Confidence 4456666777777 33 3333 67777777776653
No 197
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=33.78 E-value=82 Score=16.96 Aligned_cols=15 Identities=40% Similarity=0.406 Sum_probs=8.6
Q ss_pred CccccHHHHHHHHHHH
Q 030614 134 GFFIERQEVKQMVVAT 149 (174)
Q Consensus 134 G~~I~~~el~~~l~~l 149 (174)
|. ++..++...+..+
T Consensus 17 ~~-~~~~~v~~~v~~L 31 (47)
T PF02671_consen 17 GR-ISRSEVIEEVSEL 31 (47)
T ss_dssp TC-SCHHHHHHHHHHH
T ss_pred cC-CCHHHHHHHHHHH
Confidence 44 6666666555555
No 198
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=33.77 E-value=82 Score=17.37 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=11.4
Q ss_pred CCchHHHHHhcCCCHHHHHHHH
Q 030614 27 LEDPEILARETVFSVSEIEALY 48 (174)
Q Consensus 27 ~~~~~~~~~~~~~~~~~i~~l~ 48 (174)
..++..+....+++..+|...+
T Consensus 27 ~~~~~~la~~~~l~~~qV~~WF 48 (59)
T cd00086 27 REEREELAKELGLTERQVKIWF 48 (59)
T ss_pred HHHHHHHHHHHCcCHHHHHHHH
Confidence 3555555555555555555444
No 199
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=33.40 E-value=94 Score=20.62 Aligned_cols=16 Identities=6% Similarity=0.250 Sum_probs=8.9
Q ss_pred cCCCHHHHHHHHHHHH
Q 030614 37 TVFSVSEIEALYELFK 52 (174)
Q Consensus 37 ~~~~~~~i~~l~~~F~ 52 (174)
..+|-.++..+.....
T Consensus 10 ~~lt~sEa~~iL~~~~ 25 (112)
T PRK14981 10 EYITIAEAKEILSEIE 25 (112)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3456666666665443
No 200
>COG4463 CtsR Transcriptional repressor of class III stress genes [Transcription]
Probab=33.22 E-value=43 Score=23.32 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=6.6
Q ss_pred ccHHHHHHHHHHH
Q 030614 137 IERQEVKQMVVAT 149 (174)
Q Consensus 137 I~~~el~~~l~~l 149 (174)
||.+-...++..+
T Consensus 93 iSq~~~~dII~~L 105 (153)
T COG4463 93 ISQQAAEDIIQLL 105 (153)
T ss_pred hhHHHHHHHHHHH
Confidence 5555555555444
No 201
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=33.12 E-value=2e+02 Score=21.21 Aligned_cols=43 Identities=7% Similarity=0.191 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 030614 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIID 167 (174)
Q Consensus 117 ~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~ 167 (174)
..+....+-+.|.+|..|. |+...+....+. +++++.+.+-++
T Consensus 117 ~~~l~~lV~~af~~dk~G~-l~~~rIl~Lrrl-------~i~D~~w~~am~ 159 (195)
T PF11363_consen 117 DPELRALVNRAFQVDKEGN-LNTSRILGLRRL-------EIDDERWQEAMD 159 (195)
T ss_pred ChHHHHHHHHHHhcCCCCC-cCHHHHHHHHhc-------cCCCHHHHHHHH
Confidence 3444555778888999999 999988877543 466656555444
No 202
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.09 E-value=47 Score=23.81 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=26.3
Q ss_pred HcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 91 FDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 91 ~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
++...+-+||++++..+...- .=|++.|.....- ||..=+.+++-.
T Consensus 21 YnT~TSTYVTL~dla~mVk~g-----------edF~V~DAKsgeD-iT~sVLtQIIfE 66 (193)
T COG5394 21 YNTGTSTYVTLEDLAQMVKEG-----------EDFRVQDAKSGED-ITHSVLTQIIFE 66 (193)
T ss_pred cccCCceeeeHHHHHHHHhcC-----------CceEEeeccccch-hhHHHHHHHHHH
Confidence 344445667777766554211 1266677666666 777766666544
No 203
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=32.98 E-value=1.1e+02 Score=19.38 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
|+.+++.++-+. ....+++++++.+...
T Consensus 1 i~~~~v~~lA~L----a~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKL----ARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHH----hCCCCCHHHHHHHHHH
Confidence 355666655444 4556777777666544
No 204
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=32.47 E-value=1.3e+02 Score=18.99 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=22.6
Q ss_pred CCcccHHHHHHHHHhhCCC-CChHHHHHHHHHHhcCCCCCccccHHHHHHHHH
Q 030614 96 NGILGFEEFARALSVFHPN-APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (174)
Q Consensus 96 ~g~I~~~ef~~~l~~~~~~-~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~ 147 (174)
||.++-.|--.+-..+... +.+.+....++..+....... .+..++.+.+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEA-PDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHH
Confidence 4566666654433322210 223344444545554444444 44444444443
No 205
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=32.26 E-value=2.5e+02 Score=22.15 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=9.1
Q ss_pred ccHHHHHHHHHhh
Q 030614 99 LGFEEFARALSVF 111 (174)
Q Consensus 99 I~~~ef~~~l~~~ 111 (174)
-++.+|...+...
T Consensus 211 ~s~re~~d~Wi~~ 223 (293)
T PF09712_consen 211 KSWREFYDIWIDA 223 (293)
T ss_pred cCHHHHHHHHHHH
Confidence 3788887777644
No 206
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=32.01 E-value=52 Score=23.27 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=25.0
Q ss_pred CCchHHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCc
Q 030614 27 LEDPEILARETVFSVSEIEALYELFKKISSAVIDDGL 63 (174)
Q Consensus 27 ~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~ 63 (174)
.+.++.+.+..++++.++..+...|..+... +.|+
T Consensus 41 ~e~~~~iA~~l~v~~~~V~~vatFY~~f~~~--p~Gk 75 (156)
T PRK05988 41 EDAVPVIAEALNLSRAEVHGVITFYHDFRTH--PPGR 75 (156)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhccCCC--CCCC
Confidence 3778888888888888887777777666544 4554
No 207
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=31.88 E-value=1.2e+02 Score=23.04 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 138 ERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 138 ~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
+.+|+..++.......+.++++++++.++.-+
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~ 204 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLM 204 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66777777777776677777887777776544
No 208
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=31.37 E-value=1.9e+02 Score=20.46 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhc-CCCCCHHHH
Q 030614 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAES-GMNLSDDVI 162 (174)
Q Consensus 84 ~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~-~~~l~~~~i 162 (174)
+..+...=+.+.+|.|++..|...+-..+. .|+=.-| ..+.+. +|.+.++..+..+.... .+..+.++-
T Consensus 85 Lehllg~~~~~~n~~i~~~~ff~~lQ~~lG--------dWIT~~~-Lkh~n~-MSk~Qik~L~~~Ii~~akae~~dtE~Y 154 (175)
T PF04876_consen 85 LEHLLGGEDDSTNGLIDIGKFFDILQPKLG--------DWITKNF-LKHPNR-MSKDQIKTLCEQIIEMAKAESSDTEHY 154 (175)
T ss_pred HHHHhcCCcCCcccceeHHHHHHHHHHHhh--------hHHHHHH-Hhccch-hhHHHHHHHHHHHHHHHhccCCchHHH
Confidence 344443333344678999999888865543 3333333 344556 88888887777766532 344555555
Q ss_pred HHHHHHH
Q 030614 163 ETIIDKV 169 (174)
Q Consensus 163 ~~i~~~i 169 (174)
+.+..+|
T Consensus 155 e~vwkKm 161 (175)
T PF04876_consen 155 EKVWKKM 161 (175)
T ss_pred HHHHHHh
Confidence 6555543
No 209
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=31.37 E-value=3.5e+02 Score=24.62 Aligned_cols=86 Identities=14% Similarity=0.155 Sum_probs=54.3
Q ss_pred cccHHHHHHHHh--------ccCCCchHHHHHHHHHHcCCCC-CcccHHHHHHHHHhhCC------------CCChHHHH
Q 030614 63 LINKEEFQLALF--------KTNKKESLFADRVFDLFDTKHN-GILGFEEFARALSVFHP------------NAPIDDKI 121 (174)
Q Consensus 63 ~i~~~ef~~~l~--------~~~~~~~~~~~~lf~~~d~~~~-g~I~~~ef~~~l~~~~~------------~~~~~~~~ 121 (174)
.+.+.-++.++. ...+-+-..+..+|+..+..++ .-.+..+.++.+..... +-..+--+
T Consensus 393 nvKfsaYRtAmKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~l 472 (966)
T KOG4286|consen 393 NVKFSAYRTAMKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCL 472 (966)
T ss_pred CeeehhHHHHHHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHH
Confidence 355555665541 1222344457788888876543 44566665555544321 01134467
Q ss_pred HHHHHHhcCCCCCccccHHHHHHHHHHH
Q 030614 122 EFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (174)
Q Consensus 122 ~~~F~~~D~~~~G~~I~~~el~~~l~~l 149 (174)
+|++++||..++|. |..-+|+-.+-.+
T Consensus 473 N~llNvyD~~R~g~-irvls~ki~~i~l 499 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGR-IRVLSFKIGIISL 499 (966)
T ss_pred HHHHHhcccCCCcc-eEEeeehhhHHHH
Confidence 99999999999999 9998888776664
No 210
>PLN02222 phosphoinositide phospholipase C 2
Probab=31.14 E-value=1.7e+02 Score=25.58 Aligned_cols=64 Identities=8% Similarity=0.128 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCC---hHHHHHHHHHHhcC-CCCCccccHHHHHHHHHH
Q 030614 80 ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP---IDDKIEFSFQLYDL-KQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 80 ~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~---~~~~~~~~F~~~D~-~~~G~~I~~~el~~~l~~ 148 (174)
+.+.+..+|..+.. ++.++.++|..+|... ++. ..+.+..+|..+.. .+.+. ++.+.|..+|..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~--Q~~~~~~~~~~~~ii~~~~~~~~~~~-~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDV--QKQDKATREDAQSIINSASSLLHRNG-LHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHh--cCCccCCHHHHHHHHHhhhhhhhccC-cCHHHHHHHhcC
Confidence 45578899999864 4689999999888533 232 34466777776632 35778 999999988743
No 211
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=30.94 E-value=79 Score=20.73 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=23.7
Q ss_pred CCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCc
Q 030614 96 NGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGF 135 (174)
Q Consensus 96 ~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~ 135 (174)
.|.|.|+=|..-.+.... ....+....++.+-|..+.|.
T Consensus 23 kG~VH~~C~~~~~~~k~~-~~~~~~~~aL~~l~~~l~~~i 61 (101)
T PF09943_consen 23 KGPVHYECFREKASKKLY-GDVPEDLAALLSLEDYLHEGI 61 (101)
T ss_pred CCcEeHHHHHHHHhhhcc-cChhhHHHHHHHHHHHHHHHH
Confidence 377777777666655544 444455666666666655555
No 212
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=30.41 E-value=2e+02 Score=26.50 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=60.7
Q ss_pred CCCHHHHHHH-HHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCCC
Q 030614 38 VFSVSEIEAL-YELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFD--TKHNGILGFEEFARALSVFHPN 114 (174)
Q Consensus 38 ~~~~~~i~~l-~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d--~~~~g~I~~~ef~~~l~~~~~~ 114 (174)
++++.+|..+ ++.+...+++ .-..++..++..++.+....... .+.+-+.+. .-.++.++|..|-.....+.-+
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~--~~~~isard~k~~l~qvn~k~~~-~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs 212 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQT--RENSISARDLKTILPQVNFKVSS-AKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFS 212 (1267)
T ss_pred CCChHHHHHHHHhhheeccch--hhhheeHHhhhcccccceEEech-HHHHHHHHhHhhhccccccHHHHHHHHHHHhhc
Confidence 5666666655 4666677765 56679999999888554332211 222223332 2245789999998877765432
Q ss_pred CChHHHHHH--HHH--HhcCCCCCccccHHHHHHHHHH
Q 030614 115 APIDDKIEF--SFQ--LYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 115 ~~~~~~~~~--~F~--~~D~~~~G~~I~~~el~~~l~~ 148 (174)
......+.. .|- .=+...--. ++..||.++|..
T Consensus 213 ~~~a~l~e~~~~~~~~~~~~~d~~v-V~~~ef~rFL~~ 249 (1267)
T KOG1264|consen 213 QQKAILLEFKKDFILGNTDRPDASV-VYLQEFQRFLIH 249 (1267)
T ss_pred cchhhhhcccchhhhcCCCCccceE-eeHHHHHHHHHh
Confidence 222211211 111 112122245 999999998865
No 213
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=30.00 E-value=94 Score=22.12 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 115 APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 115 ~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
..++..++..|..+-.|= . .+.+|+..++... -++++++++++++|.++
T Consensus 68 ~kPeKEYhtsYs~vqaNF--q-cs~~DLsdii~i~------f~~deel~~~~e~i~~~ 116 (160)
T PF09824_consen 68 EKPEKEYHTSYSKVQANF--Q-CSMEDLSDIIYIA------FMSDEELRDYVEKIEKE 116 (160)
T ss_pred CCchHHHHhhHhheeeee--E-eeHHHHHHHHhee------ecCHHHHHHHHHHHHHH
Confidence 456666777777665542 2 6677777776553 26677777777777654
No 214
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.95 E-value=67 Score=29.36 Aligned_cols=70 Identities=23% Similarity=0.414 Sum_probs=54.8
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 030614 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSV 110 (174)
Q Consensus 37 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~ 110 (174)
..++..+.......|..+.+ ..|.++-..-+-++.... .+...+-+++...|.+.+|.+++.||...+..
T Consensus 121 p~~~~qe~aky~q~f~s~~p---~~g~~sg~~~~pil~~s~-Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l 190 (847)
T KOG0998|consen 121 PAITPQEQAKYDQIFRSLSP---SNGLLSGDKAKPILLNSK-LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHL 190 (847)
T ss_pred CCCCHHHHHHHHHHHhccCC---CCCccccchhhhhhhcCC-CChhhhccccccccccccCCCChhhhhhhhhH
Confidence 35788888888888999987 588888887777764332 34445778999999999999999999877654
No 215
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=29.73 E-value=1.5e+02 Score=20.96 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=30.3
Q ss_pred cCCCCCccccHHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHhhh
Q 030614 129 DLKQQGFFIERQEVKQMVVATLA--------ESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 129 D~~~~G~~I~~~el~~~l~~l~~--------~~~~~l~~~~i~~i~~~i~~~ 172 (174)
|.+.+|. |+...|..+++.-+. .....++.+++..++..|++-
T Consensus 93 ~~~~n~~-i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~ 143 (175)
T PF04876_consen 93 DDSTNGL-IDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEM 143 (175)
T ss_pred cCCcccc-eeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 3445777 888888887775322 123568889999999998864
No 216
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=29.68 E-value=86 Score=18.85 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 030614 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVL 170 (174)
Q Consensus 116 ~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~ 170 (174)
..++.+..+|++-|. . +|.+|+..+++.=-+..-.+.++..+..+.+-++
T Consensus 14 l~d~~m~~if~l~~~----~-vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GLi 63 (68)
T PF07308_consen 14 LKDDDMIEIFALAGF----E-VSKAELSAWLRKEDEKGYKECSDQLLRNFLNGLI 63 (68)
T ss_pred CChHHHHHHHHHcCC----c-cCHHHHHHHHCCCCCccccccChHHHHHHHHHHH
Confidence 445677778888764 3 8999988888762111123456777777665543
No 217
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=29.41 E-value=1.1e+02 Score=16.96 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=26.8
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHH
Q 030614 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFD 89 (174)
Q Consensus 37 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~ 89 (174)
..||+.++..|...|.. +.+.+..+...+....++... .+...|.
T Consensus 5 ~~~t~~q~~~L~~~f~~-------~~~p~~~~~~~la~~l~l~~~-~V~~WF~ 49 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-------NPYPSKEEREELAKELGLTER-QVKNWFQ 49 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-------SSSCHHHHHHHHHHHHTSSHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-------hcccccccccccccccccccc-ccccCHH
Confidence 47899999999999985 234555655554433443332 2444443
No 218
>COG5562 Phage envelope protein [General function prediction only]
Probab=29.37 E-value=50 Score=22.82 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=19.0
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 87 VFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 87 lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
+-.....+..|..||+||+..+..-
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~A 101 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAEA 101 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHhC
Confidence 4445556778999999999988653
No 219
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=29.35 E-value=1.6e+02 Score=19.31 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=23.6
Q ss_pred CccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 134 GFFIERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 134 G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
-. +|.+++..+++. .|.+.++..+..+++.
T Consensus 16 ~~-~Tae~I~~ilkA----aGveve~~~~~~f~~~ 45 (103)
T cd05831 16 IE-ITADNINALLKA----AGVNVEPYWPGLFAKA 45 (103)
T ss_pred CC-CCHHHHHHHHHH----cCCcccHHHHHHHHHH
Confidence 35 999999999998 7888888777766543
No 220
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=29.24 E-value=94 Score=18.00 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=16.7
Q ss_pred CCCchHHHHHhcCCCHHHHHHHHH
Q 030614 26 GLEDPEILARETVFSVSEIEALYE 49 (174)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~i~~l~~ 49 (174)
....+..+...+++|.++++..+.
T Consensus 24 ~E~DL~~L~~kS~ms~qqVr~WFa 47 (56)
T PF11569_consen 24 QEEDLDELCDKSRMSYQQVRDWFA 47 (56)
T ss_dssp -TTHHHHHHHHTT--HHHHHHHHH
T ss_pred cHhhHHHHHHHHCCCHHHHHHHHH
Confidence 447788888888888888877765
No 221
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=29.15 E-value=1.4e+02 Score=18.29 Aligned_cols=30 Identities=17% Similarity=0.420 Sum_probs=14.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
+++.|+...+-..+ .|..+++++++.++++
T Consensus 48 ~sy~elA~~il~~f--~~~di~~~~L~~ii~~ 77 (79)
T PF14821_consen 48 LSYAELAFEILSPF--LGDDIPEEELKEIIEK 77 (79)
T ss_dssp S-HHHHHHHHHHHH--CCCCS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--HccCCCHHHHHHHHHH
Confidence 55555555333332 4556666666666654
No 222
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=29.04 E-value=82 Score=18.47 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=17.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETII 166 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~ 166 (174)
|+.++|...|+. ...-++.++++...
T Consensus 30 it~~DF~~Al~~----~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 30 ITMEDFEEALKK----VKPSVSQEDLKKYE 55 (62)
T ss_dssp BCHHHHHHHHHT----CGGSS-HHHHHHHH
T ss_pred CCHHHHHHHHHH----cCCCCCHHHHHHHH
Confidence 788888888877 45557777776543
No 223
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=29.02 E-value=1.4e+02 Score=18.82 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
|+.++++++-+. ....+++++++.+...
T Consensus 3 i~~e~i~~la~L----a~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 3 ITREEVKHLAKL----ARLELSEEELEKFAGQ 30 (95)
T ss_pred CCHHHHHHHHHH----hCCCCCHHHHHHHHHH
Confidence 667777776655 4666788777666554
No 224
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=27.50 E-value=62 Score=28.60 Aligned_cols=64 Identities=23% Similarity=0.379 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChH---------HHHHHHHHHhcCCCC--------------------
Q 030614 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPID---------DKIEFSFQLYDLKQQ-------------------- 133 (174)
Q Consensus 83 ~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~---------~~~~~~F~~~D~~~~-------------------- 133 (174)
...+++..+|.+.+++.+|.+|......+.. .-.. ......|...|.+++
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~-vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~ 516 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFAFGN-VVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLK 516 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHHHHH-HHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccc
Confidence 3667888899999999999998776555532 1111 124557899999999
Q ss_pred ---CccccHHHHHHHHHH
Q 030614 134 ---GFFIERQEVKQMVVA 148 (174)
Q Consensus 134 ---G~~I~~~el~~~l~~ 148 (174)
|. ++.+|+...+..
T Consensus 517 ~s~~~-vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 517 KSFGV-VTVDELVALLAL 533 (975)
T ss_pred cccCe-eEHHHHHHHHHH
Confidence 99 999999887763
No 225
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=27.43 E-value=1.6e+02 Score=19.43 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhhhc
Q 030614 115 APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDV-IETIIDKVLPNL 173 (174)
Q Consensus 115 ~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~-i~~i~~~i~~~~ 173 (174)
..+...+. ++..--...... .|.+|+...+..+. +++. ++.+++.++.++
T Consensus 48 ~d~~al~d-~i~~a~~~~~~~-~s~~eIe~~ie~~~-------e~~~~~~~l~~~vl~el 98 (113)
T PF12363_consen 48 GDPVALAD-IIYAATAHEKKR-PSREEIEDYIEDII-------EDEDDIEELFDEVLKEL 98 (113)
T ss_pred CCHHHHHH-HHHHHhcccCCC-CCHHHHHHHHHHHH-------hcchhHHHHHHHHHHHH
Confidence 34443333 334444455667 89999999998752 2223 677777776653
No 226
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=27.12 E-value=75 Score=15.94 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=5.5
Q ss_pred CcccHHHHHHHH
Q 030614 97 GILGFEEFARAL 108 (174)
Q Consensus 97 g~I~~~ef~~~l 108 (174)
|+|++++++.+.
T Consensus 3 ~~i~~~~~~d~a 14 (33)
T PF09373_consen 3 GTISKEEYLDMA 14 (33)
T ss_pred ceecHHHHHHHH
Confidence 444444444443
No 227
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=26.66 E-value=1.5e+02 Score=21.03 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhccCCCCCC-cccHHHHHHHHhccCCCc-----hHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 030614 43 EIEALYELFKKISSAVIDDG-LINKEEFQLALFKTNKKE-----SLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (174)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g-~i~~~ef~~~l~~~~~~~-----~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~ 111 (174)
.+.+-++.|..+...+ .+| .|+-.+|...+.....-. .......|..+-...-+.++|++|..+|..+
T Consensus 13 ~~~~~f~~Fa~fGd~~-asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSK-ASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEEL 86 (180)
T ss_pred hHHHHHHHHHHcCCcc-ccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHH
Confidence 4455566666553110 233 255566665553322111 1123445555555555667777776665443
No 228
>PRK05445 hypothetical protein; Validated
Probab=26.33 E-value=1e+02 Score=22.17 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCCCCccccHHHHHHHHH
Q 030614 119 DKIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (174)
Q Consensus 119 ~~~~~~F~~~D~~~~G~~I~~~el~~~l~ 147 (174)
++.+.....|+.-++++++|.+|+.+++.
T Consensus 135 ~kY~RML~~w~~~~~~y~LS~eei~~Il~ 163 (164)
T PRK05445 135 DKYQRMLTVWRACPRQYHLSANEILQILN 163 (164)
T ss_pred HHHHHHHHHHHhCCCcCCCCHHHHHHHHh
Confidence 45555555555444454566666666653
No 229
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=26.05 E-value=86 Score=23.28 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=20.9
Q ss_pred HHHhcCCCCCccccHHHHHHHHHHHHH
Q 030614 125 FQLYDLKQQGFFIERQEVKQMVVATLA 151 (174)
Q Consensus 125 F~~~D~~~~G~~I~~~el~~~l~~l~~ 151 (174)
..-+|.|++|. ++.+|+..+...++.
T Consensus 56 l~~~D~~~dg~-~~~~el~~l~~~~~~ 81 (212)
T PF06226_consen 56 LEGLDKDGDGK-LDPEELAALAKEIFD 81 (212)
T ss_pred HHhhhhcccCC-CCHHHHHHHHHHHHh
Confidence 34678999999 999999988877654
No 230
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=25.84 E-value=1.6e+02 Score=17.88 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=32.8
Q ss_pred HhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 030614 109 SVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIID 167 (174)
Q Consensus 109 ~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~ 167 (174)
..+.. +...+.++.-|...= +. |+..|+..+=+.++. +.++.++++.+++
T Consensus 7 ~~Lh~-G~~~e~vk~~F~~~~----~~-Vs~~EI~~~Eq~Li~---eG~~~eeiq~LCd 56 (71)
T PF04282_consen 7 KRLHE-GEDPEEVKEEFKKLF----SD-VSASEISAAEQELIQ---EGMPVEEIQKLCD 56 (71)
T ss_pred HHHhC-CCCHHHHHHHHHHHH----CC-CCHHHHHHHHHHHHH---cCCCHHHHHHHhH
Confidence 33444 444455665554432 24 899999998888864 3488888888775
No 231
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=25.79 E-value=1.6e+02 Score=21.40 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=33.1
Q ss_pred HhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 127 LYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 127 ~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
++..+-... +|.++|.+.++..- .|..++++.++.+-++|-.+
T Consensus 143 lhn~~~k~k-mt~~~Fi~~~~~~~--~~~~~~~~~L~~iY~~I~~~ 185 (187)
T smart00222 143 LHNPNVKKK-MTLEDFIKNVRGSN--DGEDLPREFLEELYDSIKNN 185 (187)
T ss_pred hcCCccCCC-CCHHHHHHHHhccC--CCCCCCHHHHHHHHHHHHhC
Confidence 344555668 99999999988742 36789999999999888655
No 232
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=25.61 E-value=2e+02 Score=20.19 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=11.9
Q ss_pred HHhcCCCCCccccHHHHHHHHHHHH
Q 030614 126 QLYDLKQQGFFIERQEVKQMVVATL 150 (174)
Q Consensus 126 ~~~D~~~~G~~I~~~el~~~l~~l~ 150 (174)
...|.++.++ +|..|++.++-.+.
T Consensus 76 ~~le~~rg~Y-~TiSeLKT~vy~i~ 99 (148)
T PF12486_consen 76 NQLEEQRGKY-MTISELKTAVYQIQ 99 (148)
T ss_pred HHHHHhcCCc-eeHHHHHHHHHHHH
Confidence 3344555555 55555555544443
No 233
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.52 E-value=1.5e+02 Score=20.83 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDKVLP 171 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~ 171 (174)
.|.+|+..++...+ ++++++++..+++..
T Consensus 94 ~Sl~dL~dii~~~f------~sdeev~ey~~ei~~ 122 (170)
T COG4860 94 GSLSDLADIIYAAF------LSDEEVKEYEDEIKA 122 (170)
T ss_pred EeHHHHHHHHHHHh------CCHHHHHHHHHHHHH
Confidence 67788888776643 777787777776654
No 234
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=25.39 E-value=88 Score=21.77 Aligned_cols=36 Identities=8% Similarity=-0.013 Sum_probs=28.1
Q ss_pred CCCchHHHHHhcCCCHHHHHHHHHHHHhhccCCCCCCc
Q 030614 26 GLEDPEILARETVFSVSEIEALYELFKKISSAVIDDGL 63 (174)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~ 63 (174)
+++.++.+.+..++++.++..+...|..+... +.|+
T Consensus 33 ~~~~~~~iA~~l~~~~~~v~~v~tFY~~f~~~--p~gk 68 (148)
T TIGR01958 33 TPEAIAAVAEMLGIPPVWVYEVATFYSMFDTE--PVGR 68 (148)
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHhHHhhcCcC--CCCC
Confidence 34888899999999999988888877777655 5553
No 235
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=25.21 E-value=2e+02 Score=18.60 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHH
Q 030614 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL 73 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l 73 (174)
-+|++|...+..++.....- -.|.++..|+...+
T Consensus 32 lLTp~E~~~l~~R~~i~~~L--l~~~~tQrEIa~~l 65 (94)
T TIGR01321 32 ILTRSEREDLGDRIRIVNEL--LNGNMSQREIASKL 65 (94)
T ss_pred hCCHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHh
Confidence 47899988888887766210 15668888888765
No 236
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.12 E-value=1.6e+02 Score=24.51 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHH
Q 030614 80 ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQM 145 (174)
Q Consensus 80 ~~~~~~~lf~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~ 145 (174)
..+.++++|-....- +|+|+=..-..-+. ....+...+-.++++.|.|.||- +.-+||.-.
T Consensus 442 dk~~yde~fy~l~p~-~gk~sg~~ak~~mv---~sklpnsvlgkiwklad~d~dg~-ld~eefala 502 (532)
T KOG1954|consen 442 DKPTYDEIFYTLSPV-NGKLSGRNAKKEMV---KSKLPNSVLGKIWKLADIDKDGM-LDDEEFALA 502 (532)
T ss_pred CCcchHhhhhccccc-CceeccchhHHHHH---hccCchhHHHhhhhhhcCCcccC-cCHHHHHHH
Confidence 344466676665443 45665443332221 12455566777778888888888 888887654
No 237
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=24.48 E-value=1.3e+02 Score=16.35 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHHhh
Q 030614 38 VFSVSEIEALYELFKKI 54 (174)
Q Consensus 38 ~~~~~~i~~l~~~F~~~ 54 (174)
.+++.++..|...|...
T Consensus 6 ~~~~~~~~~L~~~f~~~ 22 (56)
T smart00389 6 SFTPEQLEELEKEFQKN 22 (56)
T ss_pred cCCHHHHHHHHHHHHhC
Confidence 35566666666666543
No 238
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=24.43 E-value=27 Score=21.07 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=6.0
Q ss_pred ccHHHHHHHHHHH
Q 030614 137 IERQEVKQMVVAT 149 (174)
Q Consensus 137 I~~~el~~~l~~l 149 (174)
++..++.++.+.+
T Consensus 31 l~~~~l~~~~~~l 43 (76)
T PF08479_consen 31 LTLADLQQLADAL 43 (76)
T ss_dssp B-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 5555555554443
No 239
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=24.40 E-value=1.5e+02 Score=16.82 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=19.4
Q ss_pred CCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 030614 132 QQGFFIERQEVKQMVVATLAESGMNLSDDVIETII 166 (174)
Q Consensus 132 ~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~ 166 (174)
.+|. |+.+||..-+..++.. -+..++..++
T Consensus 20 a~Gr-L~~~Ef~~R~~~a~~A----~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGR-LSLDEFDERLDAAYAA----RTRGELDALF 49 (53)
T ss_pred HCCC-CCHHHHHHHHHHHHhc----CcHHHHHHHH
Confidence 4677 8888888877776543 4555555544
No 240
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=23.97 E-value=74 Score=22.91 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=21.2
Q ss_pred CCchHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 030614 27 LEDPEILARETVFSVSEIEALYELFKKISSA 57 (174)
Q Consensus 27 ~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~ 57 (174)
.+.++.+.+..+++..++..+...|..+...
T Consensus 54 ~e~~~~iA~~l~v~~a~V~gVatFY~~f~~~ 84 (169)
T PRK07571 54 RDLLLYVARQLKLPLSRVYGVATFYHLFSLK 84 (169)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHccccCcC
Confidence 3677777777777777777776666666544
No 241
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=23.60 E-value=1.8e+02 Score=18.79 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPNL 173 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~~ 173 (174)
++..||...+..- .+ ++..+++.+++.+|+.+
T Consensus 2 mtKseli~~ia~~---~~--l~k~~a~~~v~~~~~~i 33 (94)
T COG0776 2 MTKSELIDAIAEK---AG--LSKKDAEEAVDAFLEEI 33 (94)
T ss_pred CCHHHHHHHHHHH---cC--CCHHHHHHHHHHHHHHH
Confidence 5677777776652 33 88888888888887653
No 242
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=23.36 E-value=2e+02 Score=19.29 Aligned_cols=34 Identities=15% Similarity=0.369 Sum_probs=18.8
Q ss_pred CCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 030614 133 QGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLP 171 (174)
Q Consensus 133 ~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~ 171 (174)
.|. ++.+++..-+.. .+..++..++..++..+..
T Consensus 26 ~~~-~tl~~Ia~~i~~----~~s~~t~~di~~vl~~~~~ 59 (124)
T PF14848_consen 26 SGT-LTLEDIAEEIAK----EGSTLTRADIEAVLNALKD 59 (124)
T ss_pred cCc-cCHHHHHHHHHH----hCCCCCHHHHHHHHHHHHH
Confidence 455 666666554443 3455666666665554443
No 243
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=23.11 E-value=2.3e+02 Score=18.63 Aligned_cols=30 Identities=13% Similarity=0.418 Sum_probs=23.4
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 135 FFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 135 ~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
. ||.+.+..+|.. .|...++.++..+++.+
T Consensus 16 ~-iT~e~I~~IL~A----AGv~ve~~~~~~la~~L 45 (105)
T TIGR03685 16 E-INEENLKAVLEA----AGVEVDEARVKALVAAL 45 (105)
T ss_pred C-CCHHHHHHHHHH----hCCcccHHHHHHHHHHH
Confidence 7 999999999988 67777777777766543
No 244
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.95 E-value=1.8e+02 Score=17.45 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=19.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
..++++..+..-+. ..+++++.+.+.+.+.+
T Consensus 36 ~~~edLtdiy~mvk--kkenfSpsEmqaiA~eL 66 (71)
T COG4840 36 ANYEDLTDIYDMVK--KKENFSPSEMQAIADEL 66 (71)
T ss_pred ccHHHHHHHHHHHH--HhccCCHHHHHHHHHHH
Confidence 45555555554432 35678888888877654
No 245
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=22.93 E-value=1.5e+02 Score=18.73 Aligned_cols=31 Identities=10% Similarity=0.277 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
++..||...+..- . .++..+++.+++.++..
T Consensus 2 mtk~eli~~ia~~---~--~~s~~~v~~vv~~~~~~ 32 (96)
T TIGR00987 2 LTKAEMSEYLFDE---L--GLSKREAKELVELFFEE 32 (96)
T ss_pred CCHHHHHHHHHHH---h--CcCHHHHHHHHHHHHHH
Confidence 5667776666542 2 36777777777777654
No 246
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.88 E-value=1.5e+02 Score=24.61 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=31.3
Q ss_pred HHHHhhccCCCCCCcccHHHHHHHHhccCCCchHHHHHHHHHHcCCCCCcccHHHHHH
Q 030614 49 ELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFAR 106 (174)
Q Consensus 49 ~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~~~ef~~ 106 (174)
+.|..+.+ -+|+++-..-+..+.. ...++..+-++++..|.|.+|.++-+||.-
T Consensus 448 e~fy~l~p---~~gk~sg~~ak~~mv~-sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 448 EIFYTLSP---VNGKLSGRNAKKEMVK-SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hhhhcccc---cCceeccchhHHHHHh-ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 34444443 3455544444333321 123555677788888888888888888863
No 247
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=22.20 E-value=2e+02 Score=17.56 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=15.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
..++|++.+..-+. ....+++.|++.|+.+
T Consensus 36 ~~yedl~diy~~V~--~K~~fS~sEm~aI~~E 65 (71)
T PF06569_consen 36 EKYEDLKDIYEMVM--SKDSFSPSEMQAIAEE 65 (71)
T ss_pred hhHHHHHHHHHHHH--hccCCCHHHHHHHHHH
Confidence 44455555544443 2345666666666654
No 248
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=21.97 E-value=1.3e+02 Score=21.12 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=27.7
Q ss_pred hHhhhhhhhccCCCCCCCCCchHHHHHhcCCCHHHHHHHH
Q 030614 9 KHLFASLLQCCDTNPSRGLEDPEILARETVFSVSEIEALY 48 (174)
Q Consensus 9 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 48 (174)
+.|.+++++|..+++-..++++.++... .|.++|+.|.
T Consensus 5 kRLAA~vL~~G~~rVW~DP~~~~eI~~A--~tR~dIR~LI 42 (145)
T cd00481 5 KRLAADILKCGKNRVWIDPNELEEIANA--NTREDIRKLI 42 (145)
T ss_pred HHHHHHHHCCCCCceeeCHHHHHHHHHh--hhHHHHHHHH
Confidence 5788999999999876555766666544 4667777665
No 249
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=21.91 E-value=1.3e+02 Score=21.20 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=30.4
Q ss_pred hhhhhHhhhhhhhccCCCCCCCCCchHHHHHhcCCCHHHHHHHH
Q 030614 5 IEGFKHLFASLLQCCDTNPSRGLEDPEILARETVFSVSEIEALY 48 (174)
Q Consensus 5 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 48 (174)
+..-+.|.+.+.||..+++-..++++.++... .|.++|+.|.
T Consensus 4 l~~qkRLAA~iL~~G~~rVw~DP~~~~eI~~A--~tR~dIR~LI 45 (150)
T PRK08570 4 LSAQKRLAADILGVGVSRVWIDPEALEDVAEA--ITREDIRELI 45 (150)
T ss_pred hHHHHHHHHHHHCCCccceeeCHHHHHHHHHH--hhHHHHHHHH
Confidence 44557899999999999876555777666554 4667777665
No 250
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=2.8e+02 Score=19.19 Aligned_cols=60 Identities=8% Similarity=0.033 Sum_probs=41.2
Q ss_pred HHHHHHH-H-cCCCCCcccHHHHHHHHHhhCC---CCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHH
Q 030614 84 ADRVFDL-F-DTKHNGILGFEEFARALSVFHP---NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (174)
Q Consensus 84 ~~~lf~~-~-d~~~~g~I~~~ef~~~l~~~~~---~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~ 148 (174)
++.+|.. . ........+.++|+.-...-.+ +..++..+...|++.+. +|+..|+.++...
T Consensus 59 ir~~~~~~p~~~~~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~r-----~Is~gei~~v~s~ 123 (135)
T COG5502 59 IRDILVDGPDLGPPKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLKR-----HISPGEIDKVRSR 123 (135)
T ss_pred HHHHHhcCCcCCCCCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHH-----hCCHHHHHHHHHH
Confidence 4444444 2 2345678899999877665443 23455666689999975 3999999999877
No 251
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=21.75 E-value=1.4e+02 Score=20.99 Aligned_cols=38 Identities=24% Similarity=0.171 Sum_probs=27.9
Q ss_pred hHhhhhhhhccCCCCCCCCCchHHHHHhcCCCHHHHHHHH
Q 030614 9 KHLFASLLQCCDTNPSRGLEDPEILARETVFSVSEIEALY 48 (174)
Q Consensus 9 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 48 (174)
+.|.+.+++|..+++-..++++.++... .|.++++.|.
T Consensus 5 kRLAA~iL~~G~~rVw~DP~~~~eI~~A--~tR~dIR~LI 42 (145)
T cd01418 5 RRLAADILGVGINRVWIDPERLEEVAEA--ITRDDIRALI 42 (145)
T ss_pred HHHHHHHHCCCCCeeeeChHHHHHHHHh--hhHHHHHHHH
Confidence 5788999999999876555777666654 4667777765
No 252
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=21.61 E-value=1.7e+02 Score=19.53 Aligned_cols=28 Identities=11% Similarity=0.369 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 138 ERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 138 ~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
+.+|+.-++.. .+..+++++++.+++.+
T Consensus 84 s~~E~~~lI~s----l~~r~~ee~l~~iL~~i 111 (118)
T smart00657 84 TAEEAQLLIPS----LEERIDEEELEELLDDL 111 (118)
T ss_pred CHHHHHHHhhh----hhccCCHHHHHHHHHHH
Confidence 34444444444 34457777777777654
No 253
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=21.59 E-value=2.6e+02 Score=18.61 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=28.3
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030614 124 SFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDK 168 (174)
Q Consensus 124 ~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~ 168 (174)
++-++..-+. . |+.+.++.+++. .|.++++..++.++..
T Consensus 6 a~llL~~agk-e-i~e~~l~~vl~a----aGveve~~r~k~lvaa 44 (109)
T COG2058 6 AYLLLHLAGK-E-ITEDNLKSVLEA----AGVEVEEARAKALVAA 44 (109)
T ss_pred HHHHHHHccC-c-CCHHHHHHHHHH----cCCCccHHHHHHHHHH
Confidence 3334443333 7 999999999988 7888888888877654
No 254
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=21.33 E-value=1.9e+02 Score=16.98 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHHHh
Q 030614 154 GMNLSDDVIETIIDKVL 170 (174)
Q Consensus 154 ~~~l~~~~i~~i~~~i~ 170 (174)
..+|++.|++.+++.+.
T Consensus 50 ~~PL~~~Ev~~i~kSi~ 66 (71)
T PF08708_consen 50 SPPLPESEVKAIAKSIA 66 (71)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 44556666666655553
No 255
>PF08339 RTX_C: RTX C-terminal domain; InterPro: IPR013550 This domain describes the C-terminal region of various bacterial haemolysins and leukotoxins, which belong to the RTX family of toxins. These are produced by various Gram negative bacteria, such as Escherichia coli (P09983 from SWISSPROT) and Actinobacillus pleuropneumoniae (P15377 from SWISSPROT). RTX toxins may interact with lipopolysaccharide (LPS) to functionally impair and eventually kill leukocytes []. This region is found in association with the RTX N-terminal domain (IPR003995 from INTERPRO) and multiple hemolysin-type calcium-binding repeats (IPR001343 from INTERPRO).
Probab=21.25 E-value=2.2e+02 Score=20.01 Aligned_cols=13 Identities=0% Similarity=0.258 Sum_probs=8.0
Q ss_pred CCCCcccHHHHHH
Q 030614 94 KHNGILGFEEFAR 106 (174)
Q Consensus 94 ~~~g~I~~~ef~~ 106 (174)
++.|.||+.+|..
T Consensus 27 ~~~~~itiknWFk 39 (145)
T PF08339_consen 27 DNSNSITIKNWFK 39 (145)
T ss_pred CCCCcEEehhhhh
Confidence 3456677777654
No 256
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.97 E-value=2e+02 Score=17.15 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 030614 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDKVL 170 (174)
Q Consensus 137 I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~ 170 (174)
|+.+-++.++.. .|...|+.+++++.+.+-
T Consensus 32 ine~mir~M~~Q----MG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 32 INEKMIRAMMMQ----MGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCHHHHHHHHHH----hCCCccHHHHHHHHHHHH
Confidence 888888888877 798999999999887764
No 257
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=20.45 E-value=2e+02 Score=17.67 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 138 ERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 138 ~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
+..||...+..- . .++..++..+++.++..
T Consensus 2 tk~eli~~ia~~---~--~~~~~~v~~vl~~l~~~ 31 (90)
T smart00411 2 TKSELIDAIAEK---A--GLSKKDAKAAVDAFLEI 31 (90)
T ss_pred CHHHHHHHHHHH---h--CCCHHHHHHHHHHHHHH
Confidence 445555554431 2 25666666666665543
No 258
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.40 E-value=1.3e+02 Score=14.80 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=10.0
Q ss_pred CCccccHHHHHHHHHHH
Q 030614 133 QGFFIERQEVKQMVVAT 149 (174)
Q Consensus 133 ~G~~I~~~el~~~l~~l 149 (174)
.|. ||.+||.+.-..+
T Consensus 14 ~G~-IseeEy~~~k~~l 29 (31)
T PF09851_consen 14 KGE-ISEEEYEQKKARL 29 (31)
T ss_pred cCC-CCHHHHHHHHHHH
Confidence 466 7777777665443
No 259
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=20.38 E-value=2e+02 Score=18.04 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 138 ERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 138 ~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
+..||...+.. ...++..+++.+++.+++.
T Consensus 2 ~K~eli~~ia~-----~~~~s~~~~~~~v~~~~~~ 31 (90)
T PRK10753 2 NKTQLIDVIAD-----KAELSKTQAKAALESTLAA 31 (90)
T ss_pred CHHHHHHHHHH-----HhCCCHHHHHHHHHHHHHH
Confidence 44555555543 1236777777777766654
No 260
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=20.30 E-value=1.1e+02 Score=18.05 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCCCCccccHHHHHHHHH
Q 030614 121 IEFSFQLYDLKQQGFFIERQEVKQMVV 147 (174)
Q Consensus 121 ~~~~F~~~D~~~~G~~I~~~el~~~l~ 147 (174)
-..||++| .+..|. |+.-|+...|.
T Consensus 9 rdkA~e~y-~~~~g~-i~lkdIA~~Lg 33 (60)
T PF10668_consen 9 RDKAFEIY-KESNGK-IKLKDIAEKLG 33 (60)
T ss_pred HHHHHHHH-HHhCCC-ccHHHHHHHHC
Confidence 35677777 678888 99888887763
No 261
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=20.29 E-value=2.6e+02 Score=18.14 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=37.3
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 030614 105 ARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKVLPN 172 (174)
Q Consensus 105 ~~~l~~~~~~~~~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i~~~ 172 (174)
+..+..=+.++.+....--++-+.-. . +|-+|+.++...+........+..+|...|.++-.+
T Consensus 9 v~WLRaGYP~GvP~~Dy~PLlALL~r----~-Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~ 71 (96)
T PF11829_consen 9 VDWLRAGYPEGVPPTDYVPLLALLRR----R-LTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDE 71 (96)
T ss_dssp HHHHHHH-TT-B-HHHHHHHHHHHTT----T-S-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS
T ss_pred HHHHHccCCCCCCCCccHHHHHHhcc----c-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcC
Confidence 33444444445566666666666643 3 888888888888766444445777788887777544
No 262
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=20.03 E-value=4.2e+02 Score=22.13 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030614 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKV 169 (174)
Q Consensus 117 ~~~~~~~~F~~~D~~~~G~~I~~~el~~~l~~l~~~~~~~l~~~~i~~i~~~i 169 (174)
.++.++..++.++.+.=-. -+..-+..-+..+....|..+++.++.+++..-
T Consensus 302 ~~~eyQr~~r~~~~~kl~~-PS~~~v~~k~~~l~d~~~~~LSdkeis~~V~~k 353 (521)
T COG5296 302 LREEYQRVWRSFKVGKLSM-PSIAKVKEKYDKLVDTMGRRLSDKEISKMVACK 353 (521)
T ss_pred cHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHHhCCcCchhHHHHHHHHH
Confidence 3456666777776554444 455555555556655578899999999988753
Done!